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Started by timer Running as SYSTEM Building remotely on Ubuntu_18.04_bioeng49 (buildslave Testing) in workspace /home/cmiss/Jenkins/workspace/Weekly SciCrunch Knowledge Test [WS-CLEANUP] Deleting project workspace... [WS-CLEANUP] Deferred wipeout is used... [WS-CLEANUP] Done The recommended git tool is: NONE No credentials specified Cloning the remote Git repository Cloning repository https://github.com/ABI-Software/scicrunch-knowledge-testing.git > git init /home/cmiss/Jenkins/workspace/Weekly SciCrunch Knowledge Test # timeout=10 Fetching upstream changes from https://github.com/ABI-Software/scicrunch-knowledge-testing.git > git --version # timeout=10 > git --version # 'git version 2.25.1' > git fetch --tags --force --progress -- https://github.com/ABI-Software/scicrunch-knowledge-testing.git +refs/heads/*:refs/remotes/origin/* # timeout=10 > git config remote.origin.url https://github.com/ABI-Software/scicrunch-knowledge-testing.git # timeout=10 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10 Avoid second fetch > git rev-parse refs/remotes/origin/main^{commit} # timeout=10 Checking out Revision befe2fbcd317e2d12b258757fdf0a280e339600b (refs/remotes/origin/main) > git config core.sparsecheckout # timeout=10 > git checkout -f befe2fbcd317e2d12b258757fdf0a280e339600b # timeout=10 Commit message: "Update biolucida_tests.py with updated API endpoint" > git rev-list --no-walk befe2fbcd317e2d12b258757fdf0a280e339600b # timeout=10 [Weekly SciCrunch Knowledge Test] $ /bin/sh -xe /tmp/shiningpanda13908263708174678459.sh + export PENNSIEVE_API_HOST=https://api.pennsieve.io/discover + export SCICRUNCH_API_HOST=https://scicrunch.org/api/1/elastic/SPARC_PortalDatasets_pr + pip install -r requirements.txt Collecting mapknowledge@ https://github.com/AnatomicMaps/map-knowledge/releases/download/v0.13.1/mapknowledge-0.13.1-py3-none-any.whl Downloading https://github.com/AnatomicMaps/map-knowledge/releases/download/v0.13.1/mapknowledge-0.13.1-py3-none-any.whl (18 kB) Requirement already satisfied: requests==2.28.1 in /home/cmiss/Jenkins/shiningpanda/jobs/816b5b0a/virtualenvs/d41d8cd9/lib/python3.8/site-packages (from -r requirements.txt (line 1)) (2.28.1) Requirement already satisfied: algoliasearch==2.6.2 in /home/cmiss/Jenkins/shiningpanda/jobs/816b5b0a/virtualenvs/d41d8cd9/lib/python3.8/site-packages (from -r requirements.txt (line 2)) (2.6.2) Requirement already satisfied: boto3==1.17.67 in /home/cmiss/Jenkins/shiningpanda/jobs/816b5b0a/virtualenvs/d41d8cd9/lib/python3.8/site-packages (from -r requirements.txt (line 3)) (1.17.67) Requirement already satisfied: ftfy==6.1.1 in /home/cmiss/Jenkins/shiningpanda/jobs/816b5b0a/virtualenvs/d41d8cd9/lib/python3.8/site-packages (from -r requirements.txt (line 4)) (6.1.1) Requirement already satisfied: urllib3<1.27,>=1.21.1 in /home/cmiss/Jenkins/shiningpanda/jobs/816b5b0a/virtualenvs/d41d8cd9/lib/python3.8/site-packages (from requests==2.28.1->-r requirements.txt (line 1)) (1.26.12) Requirement already satisfied: idna<4,>=2.5 in /home/cmiss/Jenkins/shiningpanda/jobs/816b5b0a/virtualenvs/d41d8cd9/lib/python3.8/site-packages (from requests==2.28.1->-r requirements.txt (line 1)) (3.4) Requirement already satisfied: certifi>=2017.4.17 in /home/cmiss/Jenkins/shiningpanda/jobs/816b5b0a/virtualenvs/d41d8cd9/lib/python3.8/site-packages (from requests==2.28.1->-r requirements.txt (line 1)) (2022.9.24) Requirement already satisfied: charset-normalizer<3,>=2 in /home/cmiss/Jenkins/shiningpanda/jobs/816b5b0a/virtualenvs/d41d8cd9/lib/python3.8/site-packages (from requests==2.28.1->-r requirements.txt (line 1)) (2.0.12) Requirement already satisfied: s3transfer<0.5.0,>=0.4.0 in /home/cmiss/Jenkins/shiningpanda/jobs/816b5b0a/virtualenvs/d41d8cd9/lib/python3.8/site-packages (from boto3==1.17.67->-r requirements.txt (line 3)) (0.4.2) Requirement already satisfied: botocore<1.21.0,>=1.20.67 in /home/cmiss/Jenkins/shiningpanda/jobs/816b5b0a/virtualenvs/d41d8cd9/lib/python3.8/site-packages (from boto3==1.17.67->-r requirements.txt (line 3)) (1.20.112) Requirement already satisfied: jmespath<1.0.0,>=0.7.1 in /home/cmiss/Jenkins/shiningpanda/jobs/816b5b0a/virtualenvs/d41d8cd9/lib/python3.8/site-packages (from boto3==1.17.67->-r requirements.txt (line 3)) (0.10.0) Requirement already satisfied: wcwidth>=0.2.5 in /home/cmiss/Jenkins/shiningpanda/jobs/816b5b0a/virtualenvs/d41d8cd9/lib/python3.8/site-packages (from ftfy==6.1.1->-r requirements.txt (line 4)) (0.2.6) Requirement already satisfied: rdflib<7.0.0,>=6.2.0 in /home/cmiss/Jenkins/shiningpanda/jobs/816b5b0a/virtualenvs/d41d8cd9/lib/python3.8/site-packages (from mapknowledge@ https://github.com/AnatomicMaps/map-knowledge/releases/download/v0.13.1/mapknowledge-0.13.1-py3-none-any.whl->-r requirements.txt (line 5)) (6.2.0) Requirement already satisfied: networkx<3.0.0,>=2.8.8 in /home/cmiss/Jenkins/shiningpanda/jobs/816b5b0a/virtualenvs/d41d8cd9/lib/python3.8/site-packages (from mapknowledge@ https://github.com/AnatomicMaps/map-knowledge/releases/download/v0.13.1/mapknowledge-0.13.1-py3-none-any.whl->-r requirements.txt (line 5)) (2.8.8) Requirement already satisfied: python-dateutil<3.0.0,>=2.1 in /home/cmiss/Jenkins/shiningpanda/jobs/816b5b0a/virtualenvs/d41d8cd9/lib/python3.8/site-packages (from botocore<1.21.0,>=1.20.67->boto3==1.17.67->-r requirements.txt (line 3)) (2.8.2) Requirement already satisfied: pyparsing in /home/cmiss/Jenkins/shiningpanda/jobs/816b5b0a/virtualenvs/d41d8cd9/lib/python3.8/site-packages (from rdflib<7.0.0,>=6.2.0->mapknowledge@ https://github.com/AnatomicMaps/map-knowledge/releases/download/v0.13.1/mapknowledge-0.13.1-py3-none-any.whl->-r requirements.txt (line 5)) (3.0.9) Requirement already satisfied: isodate in /home/cmiss/Jenkins/shiningpanda/jobs/816b5b0a/virtualenvs/d41d8cd9/lib/python3.8/site-packages (from rdflib<7.0.0,>=6.2.0->mapknowledge@ https://github.com/AnatomicMaps/map-knowledge/releases/download/v0.13.1/mapknowledge-0.13.1-py3-none-any.whl->-r requirements.txt (line 5)) (0.6.1) Requirement already satisfied: setuptools in /home/cmiss/Jenkins/shiningpanda/jobs/816b5b0a/virtualenvs/d41d8cd9/lib/python3.8/site-packages (from rdflib<7.0.0,>=6.2.0->mapknowledge@ https://github.com/AnatomicMaps/map-knowledge/releases/download/v0.13.1/mapknowledge-0.13.1-py3-none-any.whl->-r requirements.txt (line 5)) (65.5.0) Requirement already satisfied: six>=1.5 in /home/cmiss/Jenkins/shiningpanda/jobs/816b5b0a/virtualenvs/d41d8cd9/lib/python3.8/site-packages (from python-dateutil<3.0.0,>=2.1->botocore<1.21.0,>=1.20.67->boto3==1.17.67->-r requirements.txt (line 3)) (1.16.0) [notice] A new release of pip available: 22.3 -> 25.0.1 [notice] To update, run: pip install --upgrade pip + python -m unittest tests/slow_tests/test_datasets_tests.py F ====================================================================== FAIL: test_files_information (tests.slow_tests.test_datasets_tests.SciCrunchDatasetFilesTest) ---------------------------------------------------------------------- Traceback (most recent call last): File "/home/cmiss/Jenkins/workspace/Weekly SciCrunch Knowledge Test/tests/slow_tests/test_datasets_tests.py", line 342, in test_files_information self.assertEqual(200, scicrunch_response.status_code) AssertionError: 200 != 504 ---------------------------------------------------------------------- Ran 1 test in 128.398s FAILED (failures=1) Reports generated for 17 Reports generated for 30 Reports generated for 78 Reports generated for 7 Reports generated for 8 Reports generated for 171 Reports generated for 261 Reports generated for 303 Reports generated for 305 Reports generated for 229 Reports generated for 257 Reports generated for 270 Reports generated for 294 Reports generated for 211 Reports generated for 22 Reports generated for 210 Reports generated for 296 Reports generated for 143 Reports generated for 20 Reports generated for 259 Reports generated for 334 Reports generated for 31 Reports generated for 291 Reports generated for 184 Reports generated for 64 Reports generated for 159 Reports generated for 335 Reports generated for 206 Reports generated for 351 Reports generated for 169 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for 241 Reports generated for 252 Reports generated for 63 Reports generated for 343 Reports generated for 114 Reports generated for 175 Reports generated for 227 Reports generated for 246 Reports generated for 149 Reports generated for 124 Reports generated for 145 Reports generated for 274 Build step 'Virtualenv Builder' marked build as failure Archiving artifacts [Slack Notifications] found #180 as previous completed, non-aborted build [Slack Notifications] will send OnEveryFailureNotification because build matches and user preferences allow it Finished: FAILURE