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Started by timer Running as SYSTEM Building remotely on Ubuntu_18.04_bioeng49 (buildslave Testing) in workspace /home/cmiss/Jenkins/workspace/Weekly SciCrunch Knowledge Test [WS-CLEANUP] Deleting project workspace... [WS-CLEANUP] Deferred wipeout is used... [WS-CLEANUP] Done The recommended git tool is: NONE No credentials specified Cloning the remote Git repository Cloning repository https://github.com/ABI-Software/scicrunch-knowledge-testing.git > git init /home/cmiss/Jenkins/workspace/Weekly SciCrunch Knowledge Test # timeout=10 Fetching upstream changes from https://github.com/ABI-Software/scicrunch-knowledge-testing.git > git --version # timeout=10 > git --version # 'git version 2.25.1' > git fetch --tags --force --progress -- https://github.com/ABI-Software/scicrunch-knowledge-testing.git +refs/heads/*:refs/remotes/origin/* # timeout=10 > git config remote.origin.url https://github.com/ABI-Software/scicrunch-knowledge-testing.git # timeout=10 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10 Avoid second fetch > git rev-parse refs/remotes/origin/main^{commit} # timeout=10 Checking out Revision 13336d4712de1b48b29f12bf3e0cbc5751506fdd (refs/remotes/origin/main) > git config core.sparsecheckout # timeout=10 > git checkout -f 13336d4712de1b48b29f12bf3e0cbc5751506fdd # timeout=10 Commit message: "Improve scicrunch testing." > git rev-list --no-walk 13336d4712de1b48b29f12bf3e0cbc5751506fdd # timeout=10 [Weekly SciCrunch Knowledge Test] $ /bin/sh -xe /tmp/shiningpanda15259775190002519579.sh + export PENNSIEVE_API_HOST=https://api.pennsieve.io/discover + export SCICRUNCH_API_HOST=https://scicrunch.org/api/1/elastic/SPARC_PortalDatasets_pr + pip install -r requirements.txt Collecting mapknowledge@ https://github.com/AnatomicMaps/map-knowledge/releases/download/v0.13.1/mapknowledge-0.13.1-py3-none-any.whl Downloading https://github.com/AnatomicMaps/map-knowledge/releases/download/v0.13.1/mapknowledge-0.13.1-py3-none-any.whl (18 kB) Requirement already satisfied: requests==2.28.1 in /home/cmiss/Jenkins/shiningpanda/jobs/816b5b0a/virtualenvs/d41d8cd9/lib/python3.8/site-packages (from -r requirements.txt (line 1)) (2.28.1) Requirement already satisfied: algoliasearch==2.6.2 in /home/cmiss/Jenkins/shiningpanda/jobs/816b5b0a/virtualenvs/d41d8cd9/lib/python3.8/site-packages (from -r requirements.txt (line 2)) (2.6.2) Requirement already satisfied: boto3==1.17.67 in /home/cmiss/Jenkins/shiningpanda/jobs/816b5b0a/virtualenvs/d41d8cd9/lib/python3.8/site-packages (from -r requirements.txt (line 3)) (1.17.67) Requirement already satisfied: ftfy==6.1.1 in /home/cmiss/Jenkins/shiningpanda/jobs/816b5b0a/virtualenvs/d41d8cd9/lib/python3.8/site-packages (from -r requirements.txt (line 4)) (6.1.1) Requirement already satisfied: charset-normalizer<3,>=2 in /home/cmiss/Jenkins/shiningpanda/jobs/816b5b0a/virtualenvs/d41d8cd9/lib/python3.8/site-packages (from requests==2.28.1->-r requirements.txt (line 1)) (2.0.12) Requirement already satisfied: certifi>=2017.4.17 in /home/cmiss/Jenkins/shiningpanda/jobs/816b5b0a/virtualenvs/d41d8cd9/lib/python3.8/site-packages (from requests==2.28.1->-r requirements.txt (line 1)) (2022.9.24) Requirement already satisfied: idna<4,>=2.5 in /home/cmiss/Jenkins/shiningpanda/jobs/816b5b0a/virtualenvs/d41d8cd9/lib/python3.8/site-packages (from requests==2.28.1->-r requirements.txt (line 1)) (3.4) Requirement already satisfied: urllib3<1.27,>=1.21.1 in /home/cmiss/Jenkins/shiningpanda/jobs/816b5b0a/virtualenvs/d41d8cd9/lib/python3.8/site-packages (from requests==2.28.1->-r requirements.txt (line 1)) (1.26.12) Requirement already satisfied: s3transfer<0.5.0,>=0.4.0 in /home/cmiss/Jenkins/shiningpanda/jobs/816b5b0a/virtualenvs/d41d8cd9/lib/python3.8/site-packages (from boto3==1.17.67->-r requirements.txt (line 3)) (0.4.2) Requirement already satisfied: botocore<1.21.0,>=1.20.67 in /home/cmiss/Jenkins/shiningpanda/jobs/816b5b0a/virtualenvs/d41d8cd9/lib/python3.8/site-packages (from boto3==1.17.67->-r requirements.txt (line 3)) (1.20.112) Requirement already satisfied: jmespath<1.0.0,>=0.7.1 in /home/cmiss/Jenkins/shiningpanda/jobs/816b5b0a/virtualenvs/d41d8cd9/lib/python3.8/site-packages (from boto3==1.17.67->-r requirements.txt (line 3)) (0.10.0) Requirement already satisfied: wcwidth>=0.2.5 in /home/cmiss/Jenkins/shiningpanda/jobs/816b5b0a/virtualenvs/d41d8cd9/lib/python3.8/site-packages (from ftfy==6.1.1->-r requirements.txt (line 4)) (0.2.6) Requirement already satisfied: networkx<3.0.0,>=2.8.8 in /home/cmiss/Jenkins/shiningpanda/jobs/816b5b0a/virtualenvs/d41d8cd9/lib/python3.8/site-packages (from mapknowledge@ https://github.com/AnatomicMaps/map-knowledge/releases/download/v0.13.1/mapknowledge-0.13.1-py3-none-any.whl->-r requirements.txt (line 5)) (2.8.8) Requirement already satisfied: rdflib<7.0.0,>=6.2.0 in /home/cmiss/Jenkins/shiningpanda/jobs/816b5b0a/virtualenvs/d41d8cd9/lib/python3.8/site-packages (from mapknowledge@ https://github.com/AnatomicMaps/map-knowledge/releases/download/v0.13.1/mapknowledge-0.13.1-py3-none-any.whl->-r requirements.txt (line 5)) (6.2.0) Requirement already satisfied: python-dateutil<3.0.0,>=2.1 in /home/cmiss/Jenkins/shiningpanda/jobs/816b5b0a/virtualenvs/d41d8cd9/lib/python3.8/site-packages (from botocore<1.21.0,>=1.20.67->boto3==1.17.67->-r requirements.txt (line 3)) (2.8.2) Requirement already satisfied: setuptools in /home/cmiss/Jenkins/shiningpanda/jobs/816b5b0a/virtualenvs/d41d8cd9/lib/python3.8/site-packages (from rdflib<7.0.0,>=6.2.0->mapknowledge@ https://github.com/AnatomicMaps/map-knowledge/releases/download/v0.13.1/mapknowledge-0.13.1-py3-none-any.whl->-r requirements.txt (line 5)) (65.5.0) Requirement already satisfied: isodate in /home/cmiss/Jenkins/shiningpanda/jobs/816b5b0a/virtualenvs/d41d8cd9/lib/python3.8/site-packages (from rdflib<7.0.0,>=6.2.0->mapknowledge@ https://github.com/AnatomicMaps/map-knowledge/releases/download/v0.13.1/mapknowledge-0.13.1-py3-none-any.whl->-r requirements.txt (line 5)) (0.6.1) Requirement already satisfied: pyparsing in /home/cmiss/Jenkins/shiningpanda/jobs/816b5b0a/virtualenvs/d41d8cd9/lib/python3.8/site-packages (from rdflib<7.0.0,>=6.2.0->mapknowledge@ https://github.com/AnatomicMaps/map-knowledge/releases/download/v0.13.1/mapknowledge-0.13.1-py3-none-any.whl->-r requirements.txt (line 5)) (3.0.9) Requirement already satisfied: six>=1.5 in /home/cmiss/Jenkins/shiningpanda/jobs/816b5b0a/virtualenvs/d41d8cd9/lib/python3.8/site-packages (from python-dateutil<3.0.0,>=2.1->botocore<1.21.0,>=1.20.67->boto3==1.17.67->-r requirements.txt (line 3)) (1.16.0) [notice] A new release of pip available: 22.3 -> 24.0 [notice] To update, run: pip install --upgrade pip + python -m unittest tests/slow_tests/test_datasets_tests.py Reports generated for 17 Reports generated for 30 Reports generated for 78 Reports generated for 7 Reports generated for 8 Reports generated for 171 Reports generated for 261 Reports generated for 303 Reports generated for 305 Reports generated for 229 Reports generated for 146 Reports generated for 257 Reports generated for 136 Reports generated for 270 Reports generated for 294 Reports 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for 57 Reports generated for 205 Reports generated for 21 Reports generated for 153 Reports generated for 242 Reports generated for 24 Reports generated for 320 Reports generated for 154 Reports generated for 97 Reports generated for 32 Reports generated for 271 Reports generated for 28 Reports generated for 173 Reports generated for 85 Reports generated for 162 Reports generated for 89 Reports generated for 239 Reports generated for 376 Reports generated for 369 Reports generated for 375 Reports generated for 354 Reports generated for 29 Reports generated for 357 Reports generated for 132 Reports generated for 292 Reports generated for 182 Reports generated for 367 Reports generated for 373 Reports generated for 65 Reports generated for 225 Reports generated for 316 Reports generated for 161 Reports generated for 226 Reports generated for 55 Reports generated for 165 Reports generated for 204 Reports generated for 59 Reports generated for 138 Reports generated for 108 Reports generated for 106 Reports generated for 283 Reports generated for 317 Reports generated for 48 Reports generated for 293 Reports generated for 178 Reports generated for 41 Reports generated for 324 Reports generated for 88 Reports generated for 333 Reports generated for 287 Reports generated for 386 Reports generated for 385 Reports generated for 388 Reports generated for 208 Reports generated for 380 Reports generated for 382 Reports generated for 378 Reports generated for 118 Reports generated for 372 Reports generated for 307 Number of datasets tested: 0 Number of dataset with erros: 28 Failed Datasets: ['136', '26', '148', '114', '149', '125', '126', '77', '150', '139', '34', '120', '230', '224', '142', '286', '167', '147', '33', '117', '119', '328', '186', '32', '132', '292', '118', '307'] F ====================================================================== FAIL: test_files_information (tests.slow_tests.test_datasets_tests.SciCrunchDatasetFilesTest) ---------------------------------------------------------------------- Traceback (most recent call last): File "/home/cmiss/Jenkins/workspace/Weekly SciCrunch Knowledge Test/tests/slow_tests/test_datasets_tests.py", line 376, in test_files_information self.assertEqual(0, len(reports['FailedIds'])) AssertionError: 0 != 28 ---------------------------------------------------------------------- Ran 1 test in 295.612s FAILED (failures=1) Full report has been generated at reports/error_reports.json Build step 'Virtualenv Builder' marked build as failure Archiving artifacts [Slack Notifications] found #104 as previous completed, non-aborted build [Slack Notifications] will send OnEveryFailureNotification because build matches and user preferences allow it Finished: FAILURE