Console Output
Started by timer
Running as SYSTEM
Building remotely on Ubuntu_18.04_bioeng49 (buildslave Testing) in workspace /home/cmiss/Jenkins/workspace/SPARC-API
[WS-CLEANUP] Deleting project workspace...
[WS-CLEANUP] Deferred wipeout is used...
[WS-CLEANUP] Done
The recommended git tool is: NONE
No credentials specified
Cloning the remote Git repository
Cloning repository https://github.com/nih-sparc/sparc-api.git
> git init /home/cmiss/Jenkins/workspace/SPARC-API # timeout=10
Fetching upstream changes from https://github.com/nih-sparc/sparc-api.git
> git --version # timeout=10
> git --version # 'git version 2.25.1'
> git fetch --tags --force --progress -- https://github.com/nih-sparc/sparc-api.git +refs/heads/*:refs/remotes/origin/* # timeout=10
> git config remote.origin.url https://github.com/nih-sparc/sparc-api.git # timeout=10
> git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10
Avoid second fetch
> git rev-parse refs/remotes/origin/master^{commit} # timeout=10
Checking out Revision 44e28f2f0c3b9474cef7c1d33f7e79e77e1a763e (refs/remotes/origin/master)
> git config core.sparsecheckout # timeout=10
> git checkout -f 44e28f2f0c3b9474cef7c1d33f7e79e77e1a763e # timeout=10
Commit message: "Merge pull request #203 from nih-sparc/update-osparc-services-default-limit"
> git rev-list --no-walk 8a628a1a088723fb80f32e4728544ca0d3abb9fd # timeout=10
[SPARC-API] $ /usr/bin/python3.9 /home/cmiss/Jenkins/shiningpanda/jobs/c6a9534b/virtualenv.py /home/cmiss/Jenkins/shiningpanda/jobs/c6a9534b/virtualenvs/d41d8cd9
/home/cmiss/Jenkins/shiningpanda/jobs/c6a9534b/virtualenv.py:1041: DeprecationWarning: the imp module is deprecated in favour of importlib; see the module's documentation for alternative uses
import imp
Using base prefix '/usr'
New python executable in /home/cmiss/Jenkins/shiningpanda/jobs/c6a9534b/virtualenvs/d41d8cd9/bin/python3.9
Also creating executable in /home/cmiss/Jenkins/shiningpanda/jobs/c6a9534b/virtualenvs/d41d8cd9/bin/python
Installing setuptools, pip, wheel...done.
[SPARC-API] $ /bin/sh -xe /tmp/shiningpanda6326486504338222967.sh
+ pwd
+ export PYTHONPATH=/home/cmiss/Jenkins/workspace/SPARC-API
+ export PROTOCOL_BUFFERS_PYTHON_IMPLEMENTATION=python
+ pip install -r requirements.txt
Collecting api==0.0.7 (from -r requirements.txt (line 1))
Using cached api-0.0.7-py3-none-any.whl
Collecting pennsieve==6.1.1 (from -r requirements.txt (line 2))
Using cached pennsieve-6.1.1-py2.py3-none-any.whl.metadata (3.6 kB)
Collecting boto3==1.17.67 (from -r requirements.txt (line 3))
Using cached boto3-1.17.67-py2.py3-none-any.whl.metadata (6.2 kB)
Collecting botocore==1.20.67 (from -r requirements.txt (line 4))
Using cached botocore-1.20.67-py2.py3-none-any.whl.metadata (5.6 kB)
Collecting certifi==2019.11.28 (from -r requirements.txt (line 5))
Using cached certifi-2019.11.28-py2.py3-none-any.whl.metadata (2.5 kB)
Collecting chardet==3.0.4 (from -r requirements.txt (line 6))
Using cached chardet-3.0.4-py2.py3-none-any.whl.metadata (3.2 kB)
Collecting Click==7.1.2 (from -r requirements.txt (line 7))
Using cached click-7.1.2-py2.py3-none-any.whl.metadata (2.9 kB)
Collecting docutils==0.15.2 (from -r requirements.txt (line 8))
Using cached docutils-0.15.2-py3-none-any.whl.metadata (2.6 kB)
Collecting Flask==1.1.1 (from -r requirements.txt (line 9))
Using cached Flask-1.1.1-py2.py3-none-any.whl.metadata (4.4 kB)
Collecting flask-marshmallow==0.10.1 (from -r requirements.txt (line 10))
Using cached flask_marshmallow-0.10.1-py2.py3-none-any.whl.metadata (5.8 kB)
Collecting flask-cors==3.0.8 (from -r requirements.txt (line 11))
Using cached Flask_Cors-3.0.8-py2.py3-none-any.whl.metadata (5.4 kB)
Collecting gunicorn==20.0.4 (from -r requirements.txt (line 12))
Using cached gunicorn-20.0.4-py2.py3-none-any.whl.metadata (3.5 kB)
Collecting idna==2.8 (from -r requirements.txt (line 13))
Using cached idna-2.8-py2.py3-none-any.whl.metadata (8.9 kB)
Collecting itsdangerous==1.1.0 (from -r requirements.txt (line 14))
Using cached itsdangerous-1.1.0-py2.py3-none-any.whl.metadata (3.1 kB)
Collecting Jinja2==2.11.3 (from -r requirements.txt (line 15))
Using cached Jinja2-2.11.3-py2.py3-none-any.whl.metadata (3.5 kB)
Collecting jmespath==0.9.4 (from -r requirements.txt (line 16))
Using cached jmespath-0.9.4-py2.py3-none-any.whl.metadata (7.9 kB)
Collecting MarkupSafe==1.1.1 (from -r requirements.txt (line 17))
Using cached MarkupSafe-1.1.1-cp39-cp39-manylinux2010_x86_64.whl.metadata (3.2 kB)
Collecting marshmallow==3.2.2 (from -r requirements.txt (line 18))
Using cached marshmallow-3.2.2-py2.py3-none-any.whl.metadata (7.6 kB)
Collecting nose==1.3.7 (from -r requirements.txt (line 19))
Using cached nose-1.3.7-py3-none-any.whl.metadata (1.7 kB)
Collecting osparc==0.4.3 (from -r requirements.txt (line 20))
Using cached osparc-0.4.3-py3-none-any.whl.metadata (7.0 kB)
Collecting pillow (from -r requirements.txt (line 21))
Using cached pillow-10.3.0-cp39-cp39-manylinux_2_28_x86_64.whl.metadata (9.2 kB)
Collecting public==2019.4.13 (from -r requirements.txt (line 22))
Using cached public-2019.4.13-py3-none-any.whl
Collecting pytest (from -r requirements.txt (line 23))
Using cached pytest-8.1.1-py3-none-any.whl.metadata (7.6 kB)
Collecting pymongo==3.8.0 (from -r requirements.txt (line 24))
Using cached pymongo-3.8.0-cp39-cp39-linux_x86_64.whl
Collecting python-dateutil==2.8.0 (from -r requirements.txt (line 25))
Using cached python_dateutil-2.8.0-py2.py3-none-any.whl.metadata (7.6 kB)
Collecting python-dotenv==0.10.3 (from -r requirements.txt (line 26))
Using cached python_dotenv-0.10.3-py2.py3-none-any.whl.metadata (15 kB)
Collecting query-string==2019.4.13 (from -r requirements.txt (line 27))
Using cached query_string-2019.4.13-py3-none-any.whl
Collecting requests==2.25.1 (from -r requirements.txt (line 28))
Using cached requests-2.25.1-py2.py3-none-any.whl.metadata (4.2 kB)
Collecting s3transfer==0.4.2 (from -r requirements.txt (line 29))
Using cached s3transfer-0.4.2-py2.py3-none-any.whl.metadata (1.5 kB)
Collecting sendgrid==6.9.7 (from -r requirements.txt (line 30))
Using cached sendgrid-6.9.7-py3-none-any.whl.metadata (12 kB)
Collecting six==1.13.0 (from -r requirements.txt (line 31))
Using cached six-1.13.0-py2.py3-none-any.whl.metadata (1.9 kB)
Collecting SQLAlchemy==1.3.20 (from -r requirements.txt (line 32))
Using cached SQLAlchemy-1.3.20-cp39-cp39-manylinux2010_x86_64.whl.metadata (7.8 kB)
Collecting urllib3==1.26.4 (from -r requirements.txt (line 33))
Using cached urllib3-1.26.4-py2.py3-none-any.whl.metadata (43 kB)
Collecting Werkzeug==0.16.0 (from -r requirements.txt (line 34))
Using cached Werkzeug-0.16.0-py2.py3-none-any.whl.metadata (4.7 kB)
Collecting psycopg2-binary==2.9.5 (from -r requirements.txt (line 35))
Using cached psycopg2_binary-2.9.5-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (4.4 kB)
Collecting APScheduler==3.7.0 (from -r requirements.txt (line 36))
Using cached APScheduler-3.7.0-py2.py3-none-any.whl.metadata (5.7 kB)
Collecting google-api-python-client==2.52.0 (from -r requirements.txt (line 37))
Using cached google_api_python_client-2.52.0-py2.py3-none-any.whl.metadata (6.6 kB)
Collecting oauth2client==4.1.3 (from -r requirements.txt (line 38))
Using cached oauth2client-4.1.3-py2.py3-none-any.whl.metadata (1.2 kB)
Collecting algoliasearch==2.6.2 (from -r requirements.txt (line 39))
Using cached algoliasearch-2.6.2-py2.py3-none-any.whl.metadata (4.4 kB)
Collecting contentful==1.13.1 (from -r requirements.txt (line 40))
Using cached contentful-1.13.1-py3-none-any.whl
Collecting contentful_management==2.11.0 (from -r requirements.txt (line 41))
Using cached contentful_management-2.11.0-py3-none-any.whl
Collecting configparser>=3.5 (from pennsieve==6.1.1->-r requirements.txt (line 2))
Using cached configparser-6.0.1-py3-none-any.whl.metadata (10 kB)
Collecting deprecated>=1.2.0 (from pennsieve==6.1.1->-r requirements.txt (line 2))
Using cached Deprecated-1.2.14-py2.py3-none-any.whl.metadata (5.4 kB)
Collecting future>=0.15.0 (from pennsieve==6.1.1->-r requirements.txt (line 2))
Using cached future-1.0.0-py3-none-any.whl.metadata (4.0 kB)
Collecting futures (from pennsieve==6.1.1->-r requirements.txt (line 2))
Using cached futures-3.0.5-py3-none-any.whl
Collecting protobuf>=3.2.0 (from pennsieve==6.1.1->-r requirements.txt (line 2))
Using cached protobuf-5.26.1-cp37-abi3-manylinux2014_x86_64.whl.metadata (592 bytes)
Collecting python-jose==3.2.0 (from pennsieve==6.1.1->-r requirements.txt (line 2))
Using cached python_jose-3.2.0-py2.py3-none-any.whl.metadata (5.1 kB)
Collecting pytz>=2016 (from pennsieve==6.1.1->-r requirements.txt (line 2))
Using cached pytz-2024.1-py2.py3-none-any.whl.metadata (22 kB)
Collecting rsa==4.0 (from pennsieve==6.1.1->-r requirements.txt (line 2))
Using cached rsa-4.0-py2.py3-none-any.whl.metadata (3.0 kB)
Collecting semver>=2.8.0 (from pennsieve==6.1.1->-r requirements.txt (line 2))
Using cached semver-3.0.2-py3-none-any.whl.metadata (5.0 kB)
Collecting websocket-client>=0.57.0 (from pennsieve==6.1.1->-r requirements.txt (line 2))
Using cached websocket_client-1.7.0-py3-none-any.whl.metadata (7.9 kB)
Collecting docopt>=0.6 (from pennsieve==6.1.1->-r requirements.txt (line 2))
Using cached docopt-0.6.2-py2.py3-none-any.whl
Collecting psutil>=5.4 (from pennsieve==6.1.1->-r requirements.txt (line 2))
Using cached psutil-5.9.8-cp36-abi3-manylinux_2_12_x86_64.manylinux2010_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (21 kB)
Requirement already satisfied: setuptools>=3.0 in /home/cmiss/Jenkins/shiningpanda/jobs/c6a9534b/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from gunicorn==20.0.4->-r requirements.txt (line 12)) (69.2.0)
Collecting python-http-client>=3.2.1 (from sendgrid==6.9.7->-r requirements.txt (line 30))
Using cached python_http_client-3.3.7-py3-none-any.whl.metadata (6.9 kB)
Collecting starkbank-ecdsa>=2.0.1 (from sendgrid==6.9.7->-r requirements.txt (line 30))
Using cached starkbank_ecdsa-2.2.0-py3-none-any.whl
Collecting tzlocal~=2.0 (from APScheduler==3.7.0->-r requirements.txt (line 36))
Using cached tzlocal-2.1-py2.py3-none-any.whl.metadata (8.2 kB)
Collecting httplib2<1dev,>=0.15.0 (from google-api-python-client==2.52.0->-r requirements.txt (line 37))
Using cached httplib2-0.22.0-py3-none-any.whl.metadata (2.6 kB)
Collecting google-auth<3.0.0dev,>=1.19.0 (from google-api-python-client==2.52.0->-r requirements.txt (line 37))
Using cached google_auth-2.29.0-py2.py3-none-any.whl.metadata (4.7 kB)
Collecting google-auth-httplib2>=0.1.0 (from google-api-python-client==2.52.0->-r requirements.txt (line 37))
Using cached google_auth_httplib2-0.2.0-py2.py3-none-any.whl.metadata (2.2 kB)
Collecting google-api-core!=2.0.*,!=2.1.*,!=2.2.*,!=2.3.0,<3.0.0dev,>=1.31.5 (from google-api-python-client==2.52.0->-r requirements.txt (line 37))
Using cached google_api_core-2.18.0-py3-none-any.whl.metadata (2.7 kB)
Collecting uritemplate<5,>=3.0.1 (from google-api-python-client==2.52.0->-r requirements.txt (line 37))
Using cached uritemplate-4.1.1-py2.py3-none-any.whl.metadata (2.9 kB)
Collecting pyasn1>=0.1.7 (from oauth2client==4.1.3->-r requirements.txt (line 38))
Using cached pyasn1-0.6.0-py2.py3-none-any.whl.metadata (8.3 kB)
Collecting pyasn1-modules>=0.0.5 (from oauth2client==4.1.3->-r requirements.txt (line 38))
Using cached pyasn1_modules-0.4.0-py3-none-any.whl.metadata (3.4 kB)
Collecting ecdsa<0.15 (from python-jose==3.2.0->pennsieve==6.1.1->-r requirements.txt (line 2))
Using cached ecdsa-0.14.1-py2.py3-none-any.whl.metadata (19 kB)
Collecting iniconfig (from pytest->-r requirements.txt (line 23))
Using cached iniconfig-2.0.0-py3-none-any.whl.metadata (2.6 kB)
Collecting packaging (from pytest->-r requirements.txt (line 23))
Using cached packaging-24.0-py3-none-any.whl.metadata (3.2 kB)
Collecting pluggy<2.0,>=1.4 (from pytest->-r requirements.txt (line 23))
Using cached pluggy-1.4.0-py3-none-any.whl.metadata (4.3 kB)
Collecting exceptiongroup>=1.0.0rc8 (from pytest->-r requirements.txt (line 23))
Using cached exceptiongroup-1.2.0-py3-none-any.whl.metadata (6.6 kB)
Collecting tomli>=1 (from pytest->-r requirements.txt (line 23))
Using cached tomli-2.0.1-py3-none-any.whl.metadata (8.9 kB)
Collecting wrapt<2,>=1.10 (from deprecated>=1.2.0->pennsieve==6.1.1->-r requirements.txt (line 2))
Using cached wrapt-1.16.0-cp39-cp39-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (6.6 kB)
Collecting googleapis-common-protos<2.0.dev0,>=1.56.2 (from google-api-core!=2.0.*,!=2.1.*,!=2.2.*,!=2.3.0,<3.0.0dev,>=1.31.5->google-api-python-client==2.52.0->-r requirements.txt (line 37))
Using cached googleapis_common_protos-1.63.0-py2.py3-none-any.whl.metadata (1.5 kB)
Collecting protobuf>=3.2.0 (from pennsieve==6.1.1->-r requirements.txt (line 2))
Using cached protobuf-4.25.3-cp37-abi3-manylinux2014_x86_64.whl.metadata (541 bytes)
Collecting proto-plus<2.0.0dev,>=1.22.3 (from google-api-core!=2.0.*,!=2.1.*,!=2.2.*,!=2.3.0,<3.0.0dev,>=1.31.5->google-api-python-client==2.52.0->-r requirements.txt (line 37))
Using cached proto_plus-1.23.0-py3-none-any.whl.metadata (2.2 kB)
Collecting cachetools<6.0,>=2.0.0 (from google-auth<3.0.0dev,>=1.19.0->google-api-python-client==2.52.0->-r requirements.txt (line 37))
Using cached cachetools-5.3.3-py3-none-any.whl.metadata (5.3 kB)
Collecting pyparsing!=3.0.0,!=3.0.1,!=3.0.2,!=3.0.3,<4,>=2.4.2 (from httplib2<1dev,>=0.15.0->google-api-python-client==2.52.0->-r requirements.txt (line 37))
Using cached pyparsing-3.1.2-py3-none-any.whl.metadata (5.1 kB)
Using cached pennsieve-6.1.1-py2.py3-none-any.whl (93 kB)
Using cached boto3-1.17.67-py2.py3-none-any.whl (131 kB)
Using cached botocore-1.20.67-py2.py3-none-any.whl (7.5 MB)
Using cached certifi-2019.11.28-py2.py3-none-any.whl (156 kB)
Using cached chardet-3.0.4-py2.py3-none-any.whl (133 kB)
Using cached click-7.1.2-py2.py3-none-any.whl (82 kB)
Using cached docutils-0.15.2-py3-none-any.whl (547 kB)
Using cached Flask-1.1.1-py2.py3-none-any.whl (94 kB)
Using cached flask_marshmallow-0.10.1-py2.py3-none-any.whl (9.7 kB)
Using cached Flask_Cors-3.0.8-py2.py3-none-any.whl (14 kB)
Using cached gunicorn-20.0.4-py2.py3-none-any.whl (77 kB)
Using cached idna-2.8-py2.py3-none-any.whl (58 kB)
Using cached itsdangerous-1.1.0-py2.py3-none-any.whl (16 kB)
Using cached Jinja2-2.11.3-py2.py3-none-any.whl (125 kB)
Using cached jmespath-0.9.4-py2.py3-none-any.whl (24 kB)
Using cached MarkupSafe-1.1.1-cp39-cp39-manylinux2010_x86_64.whl (32 kB)
Using cached marshmallow-3.2.2-py2.py3-none-any.whl (45 kB)
Using cached nose-1.3.7-py3-none-any.whl (154 kB)
Using cached osparc-0.4.3-py3-none-any.whl (52 kB)
Using cached python_dateutil-2.8.0-py2.py3-none-any.whl (226 kB)
Using cached python_dotenv-0.10.3-py2.py3-none-any.whl (16 kB)
Using cached requests-2.25.1-py2.py3-none-any.whl (61 kB)
Using cached s3transfer-0.4.2-py2.py3-none-any.whl (79 kB)
Using cached sendgrid-6.9.7-py3-none-any.whl (101 kB)
Using cached six-1.13.0-py2.py3-none-any.whl (10 kB)
Using cached SQLAlchemy-1.3.20-cp39-cp39-manylinux2010_x86_64.whl (1.3 MB)
Using cached urllib3-1.26.4-py2.py3-none-any.whl (153 kB)
Using cached Werkzeug-0.16.0-py2.py3-none-any.whl (327 kB)
Using cached psycopg2_binary-2.9.5-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (3.0 MB)
Using cached APScheduler-3.7.0-py2.py3-none-any.whl (59 kB)
Using cached google_api_python_client-2.52.0-py2.py3-none-any.whl (8.7 MB)
Using cached oauth2client-4.1.3-py2.py3-none-any.whl (98 kB)
Using cached algoliasearch-2.6.2-py2.py3-none-any.whl (35 kB)
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Using cached pillow-10.3.0-cp39-cp39-manylinux_2_28_x86_64.whl (4.5 MB)
Using cached pytest-8.1.1-py3-none-any.whl (337 kB)
Using cached configparser-6.0.1-py3-none-any.whl (19 kB)
Using cached Deprecated-1.2.14-py2.py3-none-any.whl (9.6 kB)
Using cached exceptiongroup-1.2.0-py3-none-any.whl (16 kB)
Using cached future-1.0.0-py3-none-any.whl (491 kB)
Using cached google_api_core-2.18.0-py3-none-any.whl (138 kB)
Using cached google_auth-2.29.0-py2.py3-none-any.whl (189 kB)
Using cached google_auth_httplib2-0.2.0-py2.py3-none-any.whl (9.3 kB)
Using cached httplib2-0.22.0-py3-none-any.whl (96 kB)
Using cached pluggy-1.4.0-py3-none-any.whl (20 kB)
Using cached protobuf-4.25.3-cp37-abi3-manylinux2014_x86_64.whl (294 kB)
Using cached psutil-5.9.8-cp36-abi3-manylinux_2_12_x86_64.manylinux2010_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl (288 kB)
Using cached pyasn1-0.6.0-py2.py3-none-any.whl (85 kB)
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Using cached cachetools-5.3.3-py3-none-any.whl (9.3 kB)
Using cached ecdsa-0.14.1-py2.py3-none-any.whl (79 kB)
Using cached googleapis_common_protos-1.63.0-py2.py3-none-any.whl (229 kB)
Using cached proto_plus-1.23.0-py3-none-any.whl (48 kB)
Using cached pyparsing-3.1.2-py3-none-any.whl (103 kB)
Using cached wrapt-1.16.0-cp39-cp39-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl (80 kB)
Installing collected packages: starkbank-ecdsa, pytz, python-dotenv, nose, jmespath, futures, docopt, chardet, certifi, wrapt, Werkzeug, websocket-client, urllib3, uritemplate, tzlocal, tomli, SQLAlchemy, six, semver, python-http-client, pyparsing, pymongo, pyasn1, public, psycopg2-binary, psutil, protobuf, pluggy, pillow, packaging, marshmallow, MarkupSafe, itsdangerous, iniconfig, idna, gunicorn, future, exceptiongroup, docutils, configparser, Click, cachetools, sendgrid, rsa, requests, query-string, python-dateutil, pytest, pyasn1-modules, proto-plus, Jinja2, httplib2, googleapis-common-protos, ecdsa, deprecated, APScheduler, python-jose, osparc, oauth2client, google-auth, Flask, contentful_management, contentful, botocore, api, algoliasearch, s3transfer, google-auth-httplib2, google-api-core, flask-marshmallow, flask-cors, google-api-python-client, boto3, pennsieve
Successfully installed APScheduler-3.7.0 Click-7.1.2 Flask-1.1.1 Jinja2-2.11.3 MarkupSafe-1.1.1 SQLAlchemy-1.3.20 Werkzeug-0.16.0 algoliasearch-2.6.2 api-0.0.7 boto3-1.17.67 botocore-1.20.67 cachetools-5.3.3 certifi-2019.11.28 chardet-3.0.4 configparser-6.0.1 contentful-1.13.1 contentful_management-2.11.0 deprecated-1.2.14 docopt-0.6.2 docutils-0.15.2 ecdsa-0.14.1 exceptiongroup-1.2.0 flask-cors-3.0.8 flask-marshmallow-0.10.1 future-1.0.0 futures-3.0.5 google-api-core-2.18.0 google-api-python-client-2.52.0 google-auth-2.29.0 google-auth-httplib2-0.2.0 googleapis-common-protos-1.63.0 gunicorn-20.0.4 httplib2-0.22.0 idna-2.8 iniconfig-2.0.0 itsdangerous-1.1.0 jmespath-0.9.4 marshmallow-3.2.2 nose-1.3.7 oauth2client-4.1.3 osparc-0.4.3 packaging-24.0 pennsieve-6.1.1 pillow-10.3.0 pluggy-1.4.0 proto-plus-1.23.0 protobuf-4.25.3 psutil-5.9.8 psycopg2-binary-2.9.5 public-2019.4.13 pyasn1-0.6.0 pyasn1-modules-0.4.0 pymongo-3.8.0 pyparsing-3.1.2 pytest-8.1.1 python-dateutil-2.8.0 python-dotenv-0.10.3 python-http-client-3.3.7 python-jose-3.2.0 pytz-2024.1 query-string-2019.4.13 requests-2.25.1 rsa-4.0 s3transfer-0.4.2 semver-3.0.2 sendgrid-6.9.7 six-1.13.0 starkbank-ecdsa-2.2.0 tomli-2.0.1 tzlocal-2.1 uritemplate-4.1.1 urllib3-1.26.4 websocket-client-1.7.0 wrapt-1.16.0
+ pip install -r requirements-dev.txt
Collecting pytest==5.4.3 (from -r requirements-dev.txt (line 1))
Using cached pytest-5.4.3-py3-none-any.whl.metadata (7.3 kB)
Requirement already satisfied: pennsieve==6.1.1 in /home/cmiss/Jenkins/shiningpanda/jobs/c6a9534b/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements-dev.txt (line 2)) (6.1.1)
Collecting black (from -r requirements-dev.txt (line 3))
Using cached black-24.3.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (75 kB)
Collecting isort (from -r requirements-dev.txt (line 4))
Using cached isort-5.13.2-py3-none-any.whl.metadata (12 kB)
Requirement already satisfied: nose in /home/cmiss/Jenkins/shiningpanda/jobs/c6a9534b/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements-dev.txt (line 5)) (1.3.7)
Requirement already satisfied: packaging in /home/cmiss/Jenkins/shiningpanda/jobs/c6a9534b/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements-dev.txt (line 6)) (24.0)
Collecting py>=1.5.0 (from pytest==5.4.3->-r requirements-dev.txt (line 1))
Using cached py-1.11.0-py2.py3-none-any.whl.metadata (2.8 kB)
Collecting attrs>=17.4.0 (from pytest==5.4.3->-r requirements-dev.txt (line 1))
Using cached attrs-23.2.0-py3-none-any.whl.metadata (9.5 kB)
Collecting more-itertools>=4.0.0 (from pytest==5.4.3->-r requirements-dev.txt (line 1))
Using cached more_itertools-10.2.0-py3-none-any.whl.metadata (34 kB)
Collecting pluggy<1.0,>=0.12 (from pytest==5.4.3->-r requirements-dev.txt (line 1))
Using cached pluggy-0.13.1-py2.py3-none-any.whl.metadata (15 kB)
Collecting wcwidth (from pytest==5.4.3->-r requirements-dev.txt (line 1))
Using cached wcwidth-0.2.13-py2.py3-none-any.whl.metadata (14 kB)
Requirement already satisfied: boto3 in /home/cmiss/Jenkins/shiningpanda/jobs/c6a9534b/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from pennsieve==6.1.1->-r requirements-dev.txt (line 2)) (1.17.67)
Requirement already satisfied: configparser>=3.5 in /home/cmiss/Jenkins/shiningpanda/jobs/c6a9534b/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from pennsieve==6.1.1->-r requirements-dev.txt (line 2)) (6.0.1)
Requirement already satisfied: deprecated>=1.2.0 in /home/cmiss/Jenkins/shiningpanda/jobs/c6a9534b/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from pennsieve==6.1.1->-r requirements-dev.txt (line 2)) (1.2.14)
Requirement already satisfied: future>=0.15.0 in /home/cmiss/Jenkins/shiningpanda/jobs/c6a9534b/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from pennsieve==6.1.1->-r requirements-dev.txt (line 2)) (1.0.0)
Requirement already satisfied: futures in /home/cmiss/Jenkins/shiningpanda/jobs/c6a9534b/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from pennsieve==6.1.1->-r requirements-dev.txt (line 2)) (3.0.5)
Requirement already satisfied: protobuf>=3.2.0 in /home/cmiss/Jenkins/shiningpanda/jobs/c6a9534b/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from pennsieve==6.1.1->-r requirements-dev.txt (line 2)) (4.25.3)
Requirement already satisfied: python-jose==3.2.0 in /home/cmiss/Jenkins/shiningpanda/jobs/c6a9534b/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from pennsieve==6.1.1->-r requirements-dev.txt (line 2)) (3.2.0)
Requirement already satisfied: pytz>=2016 in /home/cmiss/Jenkins/shiningpanda/jobs/c6a9534b/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from pennsieve==6.1.1->-r requirements-dev.txt (line 2)) (2024.1)
Requirement already satisfied: requests>=2.18 in /home/cmiss/Jenkins/shiningpanda/jobs/c6a9534b/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from pennsieve==6.1.1->-r requirements-dev.txt (line 2)) (2.25.1)
Requirement already satisfied: rsa==4.0 in /home/cmiss/Jenkins/shiningpanda/jobs/c6a9534b/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from pennsieve==6.1.1->-r requirements-dev.txt (line 2)) (4.0)
Requirement already satisfied: semver>=2.8.0 in /home/cmiss/Jenkins/shiningpanda/jobs/c6a9534b/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from pennsieve==6.1.1->-r requirements-dev.txt (line 2)) (3.0.2)
Requirement already satisfied: websocket-client>=0.57.0 in /home/cmiss/Jenkins/shiningpanda/jobs/c6a9534b/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from pennsieve==6.1.1->-r requirements-dev.txt (line 2)) (1.7.0)
Requirement already satisfied: docopt>=0.6 in /home/cmiss/Jenkins/shiningpanda/jobs/c6a9534b/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from pennsieve==6.1.1->-r requirements-dev.txt (line 2)) (0.6.2)
Requirement already satisfied: psutil>=5.4 in /home/cmiss/Jenkins/shiningpanda/jobs/c6a9534b/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from pennsieve==6.1.1->-r requirements-dev.txt (line 2)) (5.9.8)
Requirement already satisfied: python-dateutil>=2.8.0 in /home/cmiss/Jenkins/shiningpanda/jobs/c6a9534b/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from pennsieve==6.1.1->-r requirements-dev.txt (line 2)) (2.8.0)
Requirement already satisfied: six<2.0 in /home/cmiss/Jenkins/shiningpanda/jobs/c6a9534b/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from python-jose==3.2.0->pennsieve==6.1.1->-r requirements-dev.txt (line 2)) (1.13.0)
Requirement already satisfied: ecdsa<0.15 in /home/cmiss/Jenkins/shiningpanda/jobs/c6a9534b/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from python-jose==3.2.0->pennsieve==6.1.1->-r requirements-dev.txt (line 2)) (0.14.1)
Requirement already satisfied: pyasn1 in /home/cmiss/Jenkins/shiningpanda/jobs/c6a9534b/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from python-jose==3.2.0->pennsieve==6.1.1->-r requirements-dev.txt (line 2)) (0.6.0)
Collecting click>=8.0.0 (from black->-r requirements-dev.txt (line 3))
Using cached click-8.1.7-py3-none-any.whl.metadata (3.0 kB)
Collecting mypy-extensions>=0.4.3 (from black->-r requirements-dev.txt (line 3))
Using cached mypy_extensions-1.0.0-py3-none-any.whl.metadata (1.1 kB)
Collecting pathspec>=0.9.0 (from black->-r requirements-dev.txt (line 3))
Using cached pathspec-0.12.1-py3-none-any.whl.metadata (21 kB)
Collecting platformdirs>=2 (from black->-r requirements-dev.txt (line 3))
Using cached platformdirs-4.2.0-py3-none-any.whl.metadata (11 kB)
Requirement already satisfied: tomli>=1.1.0 in /home/cmiss/Jenkins/shiningpanda/jobs/c6a9534b/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from black->-r requirements-dev.txt (line 3)) (2.0.1)
Collecting typing-extensions>=4.0.1 (from black->-r requirements-dev.txt (line 3))
Using cached typing_extensions-4.11.0-py3-none-any.whl.metadata (3.0 kB)
Requirement already satisfied: wrapt<2,>=1.10 in /home/cmiss/Jenkins/shiningpanda/jobs/c6a9534b/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from deprecated>=1.2.0->pennsieve==6.1.1->-r requirements-dev.txt (line 2)) (1.16.0)
Requirement already satisfied: chardet<5,>=3.0.2 in /home/cmiss/Jenkins/shiningpanda/jobs/c6a9534b/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from requests>=2.18->pennsieve==6.1.1->-r requirements-dev.txt (line 2)) (3.0.4)
Requirement already satisfied: idna<3,>=2.5 in /home/cmiss/Jenkins/shiningpanda/jobs/c6a9534b/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from requests>=2.18->pennsieve==6.1.1->-r requirements-dev.txt (line 2)) (2.8)
Requirement already satisfied: urllib3<1.27,>=1.21.1 in /home/cmiss/Jenkins/shiningpanda/jobs/c6a9534b/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from requests>=2.18->pennsieve==6.1.1->-r requirements-dev.txt (line 2)) (1.26.4)
Requirement already satisfied: certifi>=2017.4.17 in /home/cmiss/Jenkins/shiningpanda/jobs/c6a9534b/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from requests>=2.18->pennsieve==6.1.1->-r requirements-dev.txt (line 2)) (2019.11.28)
Requirement already satisfied: botocore<1.21.0,>=1.20.67 in /home/cmiss/Jenkins/shiningpanda/jobs/c6a9534b/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from boto3->pennsieve==6.1.1->-r requirements-dev.txt (line 2)) (1.20.67)
Requirement already satisfied: jmespath<1.0.0,>=0.7.1 in /home/cmiss/Jenkins/shiningpanda/jobs/c6a9534b/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from boto3->pennsieve==6.1.1->-r requirements-dev.txt (line 2)) (0.9.4)
Requirement already satisfied: s3transfer<0.5.0,>=0.4.0 in /home/cmiss/Jenkins/shiningpanda/jobs/c6a9534b/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from boto3->pennsieve==6.1.1->-r requirements-dev.txt (line 2)) (0.4.2)
Using cached pytest-5.4.3-py3-none-any.whl (248 kB)
Using cached black-24.3.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (1.7 MB)
Using cached isort-5.13.2-py3-none-any.whl (92 kB)
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Using cached typing_extensions-4.11.0-py3-none-any.whl (34 kB)
Using cached wcwidth-0.2.13-py2.py3-none-any.whl (34 kB)
Installing collected packages: wcwidth, typing-extensions, py, pluggy, platformdirs, pathspec, mypy-extensions, more-itertools, isort, click, attrs, pytest, black
Attempting uninstall: pluggy
Found existing installation: pluggy 1.4.0
Uninstalling pluggy-1.4.0:
Successfully uninstalled pluggy-1.4.0
Attempting uninstall: click
Found existing installation: click 7.1.2
Uninstalling click-7.1.2:
Successfully uninstalled click-7.1.2
Attempting uninstall: pytest
Found existing installation: pytest 8.1.1
Uninstalling pytest-8.1.1:
Successfully uninstalled pytest-8.1.1
Successfully installed attrs-23.2.0 black-24.3.0 click-8.1.7 isort-5.13.2 more-itertools-10.2.0 mypy-extensions-1.0.0 pathspec-0.12.1 platformdirs-4.2.0 pluggy-0.13.1 py-1.11.0 pytest-5.4.3 typing-extensions-4.11.0 wcwidth-0.2.13
+ pytest
============================= test session starts ==============================
platform linux -- Python 3.9.19, pytest-5.4.3, py-1.11.0, pluggy-0.13.1
rootdir: /home/cmiss/Jenkins/workspace/SPARC-API
collected 101 items
tests/test_api.py ................... [ 18%]
tests/test_biolucida.py ............. [ 31%]
tests/test_dataset_info.py .s..ss..... [ 42%]
tests/test_health.py . [ 43%]
tests/test_monthly_stats.py ...... [ 49%]
tests/test_osparc.py .............. [ 63%]
tests/test_pmr.py ..... [ 68%]
tests/test_scicrunch.py ................s......... [ 94%]
tests/test_segmentation_info.py .. [ 96%]
tests/test_thumbnails.py ... [ 99%]
tests/test_update_contentful_entries.py . [100%]
=============================== warnings summary ===============================
/home/cmiss/Jenkins/shiningpanda/jobs/c6a9534b/virtualenvs/d41d8cd9/lib/python3.9/site-packages/apscheduler/__init__.py:1
/home/cmiss/Jenkins/shiningpanda/jobs/c6a9534b/virtualenvs/d41d8cd9/lib/python3.9/site-packages/apscheduler/__init__.py:1: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html
from pkg_resources import get_distribution, DistributionNotFound
/home/cmiss/Jenkins/shiningpanda/jobs/c6a9534b/virtualenvs/d41d8cd9/lib/python3.9/site-packages/marshmallow/__init__.py:17
/home/cmiss/Jenkins/shiningpanda/jobs/c6a9534b/virtualenvs/d41d8cd9/lib/python3.9/site-packages/marshmallow/__init__.py:17: DeprecationWarning: distutils Version classes are deprecated. Use packaging.version instead.
__version_info__ = tuple(LooseVersion(__version__).version)
/home/cmiss/Jenkins/shiningpanda/jobs/c6a9534b/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask_marshmallow/__init__.py:34
/home/cmiss/Jenkins/shiningpanda/jobs/c6a9534b/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask_marshmallow/__init__.py:34: DeprecationWarning: distutils Version classes are deprecated. Use packaging.version instead.
__version_info__ = tuple(LooseVersion(__version__).version)
/home/cmiss/Jenkins/shiningpanda/jobs/c6a9534b/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pennsieve/cache/cache_segment_pb2.py:19
/home/cmiss/Jenkins/shiningpanda/jobs/c6a9534b/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pennsieve/cache/cache_segment_pb2.py:19: DeprecationWarning: Call to deprecated create function FileDescriptor(). Note: Create unlinked descriptors is going to go away. Please use get/find descriptors from generated code or query the descriptor_pool.
DESCRIPTOR = _descriptor.FileDescriptor(
/home/cmiss/Jenkins/shiningpanda/jobs/c6a9534b/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pennsieve/cache/cache_segment_pb2.py:36
/home/cmiss/Jenkins/shiningpanda/jobs/c6a9534b/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pennsieve/cache/cache_segment_pb2.py:36: DeprecationWarning: Call to deprecated create function FieldDescriptor(). Note: Create unlinked descriptors is going to go away. Please use get/find descriptors from generated code or query the descriptor_pool.
_descriptor.FieldDescriptor(
/home/cmiss/Jenkins/shiningpanda/jobs/c6a9534b/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pennsieve/cache/cache_segment_pb2.py:53
/home/cmiss/Jenkins/shiningpanda/jobs/c6a9534b/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pennsieve/cache/cache_segment_pb2.py:53: DeprecationWarning: Call to deprecated create function FieldDescriptor(). Note: Create unlinked descriptors is going to go away. Please use get/find descriptors from generated code or query the descriptor_pool.
_descriptor.FieldDescriptor(
/home/cmiss/Jenkins/shiningpanda/jobs/c6a9534b/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pennsieve/cache/cache_segment_pb2.py:70
/home/cmiss/Jenkins/shiningpanda/jobs/c6a9534b/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pennsieve/cache/cache_segment_pb2.py:70: DeprecationWarning: Call to deprecated create function FieldDescriptor(). Note: Create unlinked descriptors is going to go away. Please use get/find descriptors from generated code or query the descriptor_pool.
_descriptor.FieldDescriptor(
/home/cmiss/Jenkins/shiningpanda/jobs/c6a9534b/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pennsieve/cache/cache_segment_pb2.py:29
/home/cmiss/Jenkins/shiningpanda/jobs/c6a9534b/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pennsieve/cache/cache_segment_pb2.py:29: DeprecationWarning: Call to deprecated create function Descriptor(). Note: Create unlinked descriptors is going to go away. Please use get/find descriptors from generated code or query the descriptor_pool.
_CACHESEGMENT = _descriptor.Descriptor(
/home/cmiss/Jenkins/shiningpanda/jobs/c6a9534b/virtualenvs/d41d8cd9/lib/python3.9/site-packages/nose/importer.py:12
/home/cmiss/Jenkins/shiningpanda/jobs/c6a9534b/virtualenvs/d41d8cd9/lib/python3.9/site-packages/nose/importer.py:12: DeprecationWarning: the imp module is deprecated in favour of importlib; see the module's documentation for alternative uses
from imp import find_module, load_module, acquire_lock, release_lock
tests/test_health.py::test_request_response
/home/cmiss/Jenkins/workspace/SPARC-API/tests/test_health.py:13: DeprecationWarning: Please use assertEqual instead.
assert_equals("healthy", json_response.get("status"))
-- Docs: https://docs.pytest.org/en/latest/warnings.html
============ 97 passed, 4 skipped, 10 warnings in 301.80s (0:05:01) ============
[Slack Notifications] found #1057 as previous completed, non-aborted build
[Slack Notifications] will send OnBackToNormalNotification because build matches and user preferences allow it
Finished: SUCCESS
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