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Started by timer Started by timer Started by timer Started by timer Started by timer Started by timer Started by timer Started by timer Started by timer Started by timer Started by timer Started by timer Started by timer Started by timer Started by timer Started by timer Started by timer Running as SYSTEM Building remotely on Ubuntu_18.04_bioeng49 (buildslave Testing) in workspace /home/cmiss/Jenkins/workspace/SPARC-API-DEV [WS-CLEANUP] Deleting project workspace... [WS-CLEANUP] Deferred wipeout is used... [WS-CLEANUP] Done The recommended git tool is: NONE No credentials specified Cloning the remote Git repository Cloning repository https://github.com/nih-sparc/sparc-api.git > git init /home/cmiss/Jenkins/workspace/SPARC-API-DEV # timeout=10 Fetching upstream changes from https://github.com/nih-sparc/sparc-api.git > git --version # timeout=10 > git --version # 'git version 2.25.1' > git fetch --tags --force --progress -- https://github.com/nih-sparc/sparc-api.git +refs/heads/*:refs/remotes/origin/* # timeout=10 > git config remote.origin.url https://github.com/nih-sparc/sparc-api.git # timeout=10 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10 Avoid second fetch > git rev-parse refs/remotes/origin/master^{commit} # timeout=10 Checking out Revision 0fd3c9499be845c4494ef7554d10ac2361d5f4f8 (refs/remotes/origin/master) > git config core.sparsecheckout # timeout=10 > git checkout -f 0fd3c9499be845c4494ef7554d10ac2361d5f4f8 # timeout=10 Commit message: "Merge pull request #214 from Tehsurfer/syntax-hotfix" > git rev-list --no-walk 0fd3c9499be845c4494ef7554d10ac2361d5f4f8 # timeout=10 [SPARC-API-DEV] $ /bin/sh -xe /tmp/shiningpanda15775257560778278936.sh + pwd + export PYTHONPATH=/home/cmiss/Jenkins/workspace/SPARC-API-DEV + export SCICRUNCH_HOST=https://scicrunch.org/api/1/elastic/SPARC_PortalDatasets_dev + export PROTOCOL_BUFFERS_PYTHON_IMPLEMENTATION=python + pip install -r requirements.txt Requirement already satisfied: api==0.0.7 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 1)) (0.0.7) Requirement already satisfied: pennsieve==6.1.1 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 2)) (6.1.1) Requirement already satisfied: boto3==1.17.67 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 3)) (1.17.67) Requirement already satisfied: botocore==1.20.67 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 4)) (1.20.67) Requirement already satisfied: certifi==2019.11.28 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 5)) (2019.11.28) Requirement already satisfied: chardet==3.0.4 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 6)) (3.0.4) Collecting Click==7.1.2 (from -r requirements.txt (line 7)) Using cached click-7.1.2-py2.py3-none-any.whl.metadata (2.9 kB) Requirement already satisfied: docutils==0.15.2 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 8)) (0.15.2) Requirement already satisfied: Flask==1.1.1 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 9)) (1.1.1) Requirement already satisfied: flask-marshmallow==0.10.1 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 10)) (0.10.1) Requirement already satisfied: flask-cors==3.0.8 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 11)) (3.0.8) Requirement already satisfied: gunicorn==20.0.4 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 12)) (20.0.4) Requirement already satisfied: idna==2.8 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 13)) (2.8) Requirement already satisfied: itsdangerous==1.1.0 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 14)) (1.1.0) Requirement already satisfied: Jinja2==2.11.3 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 15)) (2.11.3) Requirement already satisfied: jmespath==0.9.4 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 16)) (0.9.4) Requirement already satisfied: MarkupSafe==1.1.1 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 17)) (1.1.1) Requirement already satisfied: marshmallow==3.2.2 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 18)) (3.2.2) Requirement already satisfied: nose==1.3.7 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 19)) (1.3.7) Requirement already satisfied: osparc==0.4.3 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 20)) (0.4.3) Requirement already satisfied: pillow in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 21)) (10.3.0) Requirement already satisfied: public==2019.4.13 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 22)) (2019.4.13) Requirement already satisfied: pytest in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 23)) (5.4.3) Requirement already satisfied: pymongo==3.8.0 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 24)) (3.8.0) Requirement already satisfied: python-dateutil==2.8.0 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 25)) (2.8.0) Requirement already satisfied: python-dotenv==0.10.3 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 26)) (0.10.3) Requirement already satisfied: query-string==2019.4.13 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 27)) (2019.4.13) Requirement already satisfied: requests==2.25.1 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 28)) (2.25.1) Requirement already satisfied: s3transfer==0.4.2 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 29)) (0.4.2) Requirement already satisfied: sendgrid==6.9.7 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 30)) (6.9.7) Requirement already satisfied: six==1.13.0 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 31)) (1.13.0) Requirement already satisfied: SQLAlchemy==1.3.20 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 32)) (1.3.20) Requirement already satisfied: urllib3==1.26.4 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 33)) (1.26.4) Requirement already satisfied: Werkzeug==0.16.0 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 34)) (0.16.0) Requirement already satisfied: psycopg2-binary==2.9.5 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 35)) (2.9.5) Requirement already satisfied: APScheduler==3.7.0 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 36)) (3.7.0) Requirement already satisfied: google-api-python-client==2.52.0 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 37)) (2.52.0) Requirement already satisfied: oauth2client==4.1.3 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 38)) (4.1.3) Requirement already satisfied: algoliasearch==2.6.2 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 39)) (2.6.2) Requirement already satisfied: contentful==1.13.1 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 40)) (1.13.1) Requirement already satisfied: contentful_management==2.11.0 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 41)) (2.11.0) Requirement already satisfied: configparser>=3.5 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from pennsieve==6.1.1->-r requirements.txt (line 2)) (6.0.1) Requirement already satisfied: deprecated>=1.2.0 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from pennsieve==6.1.1->-r requirements.txt (line 2)) (1.2.14) Requirement already satisfied: future>=0.15.0 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from pennsieve==6.1.1->-r requirements.txt (line 2)) (1.0.0) Requirement already satisfied: futures in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from pennsieve==6.1.1->-r requirements.txt (line 2)) (3.0.5) Requirement already satisfied: protobuf>=3.2.0 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from pennsieve==6.1.1->-r requirements.txt (line 2)) (4.25.3) Requirement already satisfied: python-jose==3.2.0 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from pennsieve==6.1.1->-r requirements.txt (line 2)) (3.2.0) Requirement already satisfied: pytz>=2016 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from pennsieve==6.1.1->-r requirements.txt (line 2)) (2024.1) Requirement already satisfied: rsa==4.0 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from pennsieve==6.1.1->-r requirements.txt (line 2)) (4.0) Requirement already satisfied: semver>=2.8.0 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from pennsieve==6.1.1->-r requirements.txt (line 2)) (3.0.2) Requirement already satisfied: websocket-client>=0.57.0 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from pennsieve==6.1.1->-r requirements.txt (line 2)) (1.7.0) Requirement already satisfied: docopt>=0.6 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from pennsieve==6.1.1->-r requirements.txt (line 2)) (0.6.2) Requirement already satisfied: psutil>=5.4 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from pennsieve==6.1.1->-r requirements.txt (line 2)) (5.9.8) Requirement already satisfied: setuptools>=3.0 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from gunicorn==20.0.4->-r requirements.txt (line 12)) (69.2.0) Requirement already satisfied: python-http-client>=3.2.1 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from sendgrid==6.9.7->-r requirements.txt (line 30)) (3.3.7) Requirement already satisfied: starkbank-ecdsa>=2.0.1 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from sendgrid==6.9.7->-r requirements.txt (line 30)) (2.2.0) Requirement already satisfied: tzlocal~=2.0 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from APScheduler==3.7.0->-r requirements.txt (line 36)) (2.1) Requirement already satisfied: httplib2<1dev,>=0.15.0 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from google-api-python-client==2.52.0->-r requirements.txt (line 37)) (0.22.0) Requirement already satisfied: google-auth<3.0.0dev,>=1.19.0 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from google-api-python-client==2.52.0->-r requirements.txt (line 37)) (2.29.0) Requirement already satisfied: google-auth-httplib2>=0.1.0 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from google-api-python-client==2.52.0->-r requirements.txt (line 37)) (0.2.0) Requirement already satisfied: google-api-core!=2.0.*,!=2.1.*,!=2.2.*,!=2.3.0,<3.0.0dev,>=1.31.5 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from google-api-python-client==2.52.0->-r requirements.txt (line 37)) (2.18.0) Requirement already satisfied: uritemplate<5,>=3.0.1 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from google-api-python-client==2.52.0->-r requirements.txt (line 37)) (4.1.1) Requirement already satisfied: pyasn1>=0.1.7 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from oauth2client==4.1.3->-r requirements.txt (line 38)) (0.6.0) Requirement already satisfied: pyasn1-modules>=0.0.5 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from oauth2client==4.1.3->-r requirements.txt (line 38)) (0.4.0) Requirement already satisfied: ecdsa<0.15 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from python-jose==3.2.0->pennsieve==6.1.1->-r requirements.txt (line 2)) (0.14.1) Requirement already satisfied: py>=1.5.0 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from pytest->-r requirements.txt (line 23)) (1.11.0) Requirement already satisfied: packaging in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from pytest->-r requirements.txt (line 23)) (24.0) Requirement already satisfied: attrs>=17.4.0 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from pytest->-r requirements.txt (line 23)) (23.2.0) Requirement already satisfied: more-itertools>=4.0.0 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from pytest->-r requirements.txt (line 23)) (10.2.0) Requirement already satisfied: pluggy<1.0,>=0.12 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from pytest->-r requirements.txt (line 23)) (0.13.1) Requirement already satisfied: wcwidth in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from pytest->-r requirements.txt (line 23)) (0.2.13) Requirement already satisfied: wrapt<2,>=1.10 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from deprecated>=1.2.0->pennsieve==6.1.1->-r requirements.txt (line 2)) (1.16.0) Requirement already satisfied: googleapis-common-protos<2.0.dev0,>=1.56.2 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from google-api-core!=2.0.*,!=2.1.*,!=2.2.*,!=2.3.0,<3.0.0dev,>=1.31.5->google-api-python-client==2.52.0->-r requirements.txt (line 37)) (1.63.0) Requirement already satisfied: proto-plus<2.0.0dev,>=1.22.3 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from google-api-core!=2.0.*,!=2.1.*,!=2.2.*,!=2.3.0,<3.0.0dev,>=1.31.5->google-api-python-client==2.52.0->-r requirements.txt (line 37)) (1.23.0) Requirement already satisfied: cachetools<6.0,>=2.0.0 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from google-auth<3.0.0dev,>=1.19.0->google-api-python-client==2.52.0->-r requirements.txt (line 37)) (5.3.3) Requirement already satisfied: pyparsing!=3.0.0,!=3.0.1,!=3.0.2,!=3.0.3,<4,>=2.4.2 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from httplib2<1dev,>=0.15.0->google-api-python-client==2.52.0->-r requirements.txt (line 37)) (3.1.2) Using cached click-7.1.2-py2.py3-none-any.whl (82 kB) Installing collected packages: Click Attempting uninstall: Click Found existing installation: click 8.1.7 Uninstalling click-8.1.7: Successfully uninstalled click-8.1.7 ERROR: pip's dependency resolver does not currently take into account all the packages that are installed. This behaviour is the source of the following dependency conflicts. black 24.3.0 requires click>=8.0.0, but you have click 7.1.2 which is incompatible. Successfully installed Click-7.1.2 + pip install -r requirements-dev.txt Requirement already satisfied: pytest==5.4.3 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements-dev.txt (line 1)) (5.4.3) Requirement already satisfied: pennsieve==6.1.1 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements-dev.txt (line 2)) (6.1.1) Requirement already satisfied: black in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements-dev.txt (line 3)) (24.3.0) Requirement already satisfied: isort in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements-dev.txt (line 4)) (5.13.2) Requirement already satisfied: nose in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements-dev.txt (line 5)) (1.3.7) Requirement already satisfied: packaging in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements-dev.txt (line 6)) (24.0) Requirement already satisfied: py>=1.5.0 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from pytest==5.4.3->-r requirements-dev.txt (line 1)) (1.11.0) Requirement already satisfied: attrs>=17.4.0 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from pytest==5.4.3->-r requirements-dev.txt (line 1)) (23.2.0) Requirement already satisfied: more-itertools>=4.0.0 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from pytest==5.4.3->-r requirements-dev.txt (line 1)) (10.2.0) Requirement already satisfied: pluggy<1.0,>=0.12 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from pytest==5.4.3->-r requirements-dev.txt (line 1)) (0.13.1) Requirement already satisfied: wcwidth in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from pytest==5.4.3->-r requirements-dev.txt (line 1)) (0.2.13) Requirement already satisfied: boto3 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from pennsieve==6.1.1->-r requirements-dev.txt (line 2)) (1.17.67) Requirement already satisfied: configparser>=3.5 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from pennsieve==6.1.1->-r requirements-dev.txt (line 2)) (6.0.1) Requirement already satisfied: deprecated>=1.2.0 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from pennsieve==6.1.1->-r requirements-dev.txt (line 2)) (1.2.14) Requirement already satisfied: future>=0.15.0 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from pennsieve==6.1.1->-r requirements-dev.txt (line 2)) (1.0.0) Requirement already satisfied: futures in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from pennsieve==6.1.1->-r requirements-dev.txt (line 2)) (3.0.5) Requirement already satisfied: protobuf>=3.2.0 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from pennsieve==6.1.1->-r requirements-dev.txt (line 2)) (4.25.3) Requirement already satisfied: python-jose==3.2.0 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from pennsieve==6.1.1->-r requirements-dev.txt (line 2)) (3.2.0) Requirement already satisfied: pytz>=2016 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from pennsieve==6.1.1->-r requirements-dev.txt (line 2)) (2024.1) Requirement already satisfied: requests>=2.18 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from pennsieve==6.1.1->-r requirements-dev.txt (line 2)) (2.25.1) Requirement already satisfied: rsa==4.0 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from pennsieve==6.1.1->-r requirements-dev.txt (line 2)) (4.0) Requirement already satisfied: semver>=2.8.0 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from pennsieve==6.1.1->-r requirements-dev.txt (line 2)) (3.0.2) Requirement already satisfied: websocket-client>=0.57.0 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from pennsieve==6.1.1->-r requirements-dev.txt (line 2)) (1.7.0) Requirement already satisfied: docopt>=0.6 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from pennsieve==6.1.1->-r requirements-dev.txt (line 2)) (0.6.2) Requirement already satisfied: psutil>=5.4 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from pennsieve==6.1.1->-r requirements-dev.txt (line 2)) (5.9.8) Requirement already satisfied: python-dateutil>=2.8.0 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from pennsieve==6.1.1->-r requirements-dev.txt (line 2)) (2.8.0) Requirement already satisfied: six<2.0 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from python-jose==3.2.0->pennsieve==6.1.1->-r requirements-dev.txt (line 2)) (1.13.0) Requirement already satisfied: ecdsa<0.15 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from python-jose==3.2.0->pennsieve==6.1.1->-r requirements-dev.txt (line 2)) (0.14.1) Requirement already satisfied: pyasn1 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from python-jose==3.2.0->pennsieve==6.1.1->-r requirements-dev.txt (line 2)) (0.6.0) Collecting click>=8.0.0 (from black->-r requirements-dev.txt (line 3)) Using cached click-8.1.7-py3-none-any.whl.metadata (3.0 kB) Requirement already satisfied: mypy-extensions>=0.4.3 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from black->-r requirements-dev.txt (line 3)) (1.0.0) Requirement already satisfied: pathspec>=0.9.0 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from black->-r requirements-dev.txt (line 3)) (0.12.1) Requirement already satisfied: platformdirs>=2 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from black->-r requirements-dev.txt (line 3)) (4.2.0) Requirement already satisfied: tomli>=1.1.0 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from black->-r requirements-dev.txt (line 3)) (2.0.1) Requirement already satisfied: typing-extensions>=4.0.1 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from black->-r requirements-dev.txt (line 3)) (4.11.0) Requirement already satisfied: wrapt<2,>=1.10 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from deprecated>=1.2.0->pennsieve==6.1.1->-r requirements-dev.txt (line 2)) (1.16.0) Requirement already satisfied: chardet<5,>=3.0.2 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from requests>=2.18->pennsieve==6.1.1->-r requirements-dev.txt (line 2)) (3.0.4) Requirement already satisfied: idna<3,>=2.5 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from requests>=2.18->pennsieve==6.1.1->-r requirements-dev.txt (line 2)) (2.8) Requirement already satisfied: urllib3<1.27,>=1.21.1 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from requests>=2.18->pennsieve==6.1.1->-r requirements-dev.txt (line 2)) (1.26.4) Requirement already satisfied: certifi>=2017.4.17 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from requests>=2.18->pennsieve==6.1.1->-r requirements-dev.txt (line 2)) (2019.11.28) Requirement already satisfied: botocore<1.21.0,>=1.20.67 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from boto3->pennsieve==6.1.1->-r requirements-dev.txt (line 2)) (1.20.67) Requirement already satisfied: jmespath<1.0.0,>=0.7.1 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from boto3->pennsieve==6.1.1->-r requirements-dev.txt (line 2)) (0.9.4) Requirement already satisfied: s3transfer<0.5.0,>=0.4.0 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from boto3->pennsieve==6.1.1->-r requirements-dev.txt (line 2)) (0.4.2) Using cached click-8.1.7-py3-none-any.whl (97 kB) Installing collected packages: click Attempting uninstall: click Found existing installation: click 7.1.2 Uninstalling click-7.1.2: Successfully uninstalled click-7.1.2 Successfully installed click-8.1.7 + pytest ============================= test session starts ============================== platform linux -- Python 3.9.19, pytest-5.4.3, py-1.11.0, pluggy-0.13.1 rootdir: /home/cmiss/Jenkins/workspace/SPARC-API-DEV collected 101 items tests/test_api.py ................... [ 18%] tests/test_biolucida.py ............. [ 31%] tests/test_dataset_info.py .s..ss..... [ 42%] tests/test_health.py . [ 43%] tests/test_monthly_stats.py ...... [ 49%] tests/test_osparc.py .............. [ 63%] tests/test_pmr.py ..... [ 68%] tests/test_scicrunch.py ................s......... [ 94%] tests/test_segmentation_info.py .. [ 96%] tests/test_thumbnails.py ... [ 99%] tests/test_update_contentful_entries.py . [100%] =============================== warnings summary =============================== /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/apscheduler/__init__.py:1 /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/apscheduler/__init__.py:1: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html from pkg_resources import get_distribution, DistributionNotFound /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/marshmallow/__init__.py:17 /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/marshmallow/__init__.py:17: DeprecationWarning: distutils Version classes are deprecated. Use packaging.version instead. __version_info__ = tuple(LooseVersion(__version__).version) /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask_marshmallow/__init__.py:34 /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask_marshmallow/__init__.py:34: DeprecationWarning: distutils Version classes are deprecated. Use packaging.version instead. __version_info__ = tuple(LooseVersion(__version__).version) /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pennsieve/cache/cache_segment_pb2.py:19 /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pennsieve/cache/cache_segment_pb2.py:19: DeprecationWarning: Call to deprecated create function FileDescriptor(). Note: Create unlinked descriptors is going to go away. Please use get/find descriptors from generated code or query the descriptor_pool. DESCRIPTOR = _descriptor.FileDescriptor( /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pennsieve/cache/cache_segment_pb2.py:36 /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pennsieve/cache/cache_segment_pb2.py:36: DeprecationWarning: Call to deprecated create function FieldDescriptor(). Note: Create unlinked descriptors is going to go away. Please use get/find descriptors from generated code or query the descriptor_pool. _descriptor.FieldDescriptor( /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pennsieve/cache/cache_segment_pb2.py:53 /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pennsieve/cache/cache_segment_pb2.py:53: DeprecationWarning: Call to deprecated create function FieldDescriptor(). Note: Create unlinked descriptors is going to go away. Please use get/find descriptors from generated code or query the descriptor_pool. _descriptor.FieldDescriptor( /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pennsieve/cache/cache_segment_pb2.py:70 /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pennsieve/cache/cache_segment_pb2.py:70: DeprecationWarning: Call to deprecated create function FieldDescriptor(). Note: Create unlinked descriptors is going to go away. Please use get/find descriptors from generated code or query the descriptor_pool. _descriptor.FieldDescriptor( /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pennsieve/cache/cache_segment_pb2.py:29 /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pennsieve/cache/cache_segment_pb2.py:29: DeprecationWarning: Call to deprecated create function Descriptor(). Note: Create unlinked descriptors is going to go away. Please use get/find descriptors from generated code or query the descriptor_pool. _CACHESEGMENT = _descriptor.Descriptor( app/manifest_name_to_discover_name.py:5075 /home/cmiss/Jenkins/workspace/SPARC-API-DEV/app/manifest_name_to_discover_name.py:5075: DeprecationWarning: invalid escape sequence \s 'files/derivative/sub-4\sam-3\sub-4_sam-3_ChAT_P4-3p1_20x.jp2': 'files/derivative/sub-4/sam-3/sub-4_sam-3_ChAT_P4-3p1_20x.jp2', app/manifest_name_to_discover_name.py:5076 /home/cmiss/Jenkins/workspace/SPARC-API-DEV/app/manifest_name_to_discover_name.py:5076: DeprecationWarning: invalid escape sequence \s 'files/derivative/sub-4\sam-3\sub-4_sam-3_TH_P4-3p1_20x.jp2': 'files/derivative/sub-4/sam-3/sub-4_sam-3_TH_P4-3p1_20x.jp2', app/manifest_name_to_discover_name.py:5077 /home/cmiss/Jenkins/workspace/SPARC-API-DEV/app/manifest_name_to_discover_name.py:5077: DeprecationWarning: invalid escape sequence \s 'files/derivative/sub-5\sam-1\sub-5_sam-1_ChAT_P5-1p1_20x.jp2': 'files/derivative/sub-5/sam-1/sub-5_sam-1_ChAT_P5-1p1_20x.jp2', app/manifest_name_to_discover_name.py:5078 /home/cmiss/Jenkins/workspace/SPARC-API-DEV/app/manifest_name_to_discover_name.py:5078: DeprecationWarning: invalid escape sequence \s 'files/derivative/sub-5\sam-1\sub-5_sam-1_TH_P5-1p4_20x.jp2': 'files/derivative/sub-5/sam-1/sub-5_sam-1_TH_P5-1p4_20x.jp2', app/manifest_name_to_discover_name.py:5079 /home/cmiss/Jenkins/workspace/SPARC-API-DEV/app/manifest_name_to_discover_name.py:5079: DeprecationWarning: invalid escape sequence \s 'files/derivative/sub-5\sam-3\sub-5_sam-3_ChAT_P5-3p1_20x.jp2': 'files/derivative/sub-5/sam-3/sub-5_sam-3_ChAT_P5-3p1_20x.jp2', app/manifest_name_to_discover_name.py:5080 /home/cmiss/Jenkins/workspace/SPARC-API-DEV/app/manifest_name_to_discover_name.py:5080: DeprecationWarning: invalid escape sequence \s 'files/derivative/sub-5\sam-3\sub-5_sam-3_TH_P5-3p1_20x.jp2': 'files/derivative/sub-5/sam-3/sub-5_sam-3_TH_P5-3p1_20x.jp2', app/manifest_name_to_discover_name.py:5081 /home/cmiss/Jenkins/workspace/SPARC-API-DEV/app/manifest_name_to_discover_name.py:5081: DeprecationWarning: invalid escape sequence \s 'files/derivative/sub-6\sam-1\sub-6_sam-1_ChAT_NPcontrol_P6-1p1_20x.jp2': 'files/derivative/sub-6/sam-1/sub-6_sam-1_ChAT_NPcontrol_P6-1p1_20x.jp2', app/manifest_name_to_discover_name.py:5082 /home/cmiss/Jenkins/workspace/SPARC-API-DEV/app/manifest_name_to_discover_name.py:5082: DeprecationWarning: invalid escape sequence \s 'files/derivative/sub-6\sam-1\sub-6_sam-1_TH_NPcontrol_P6-1p1_20x.jp2': 'files/derivative/sub-6/sam-1/sub-6_sam-1_TH_NPcontrol_P6-1p1_20x.jp2', app/manifest_name_to_discover_name.py:5083 /home/cmiss/Jenkins/workspace/SPARC-API-DEV/app/manifest_name_to_discover_name.py:5083: DeprecationWarning: invalid escape sequence \s 'files/derivative/sub-6\sam-7\sub-6_sam-7_ChAT_P6-7p1_20x.jp2': 'files/derivative/sub-6/sam-7/sub-6_sam-7_ChAT_P6-7p1_20x.jp2', app/manifest_name_to_discover_name.py:5084 /home/cmiss/Jenkins/workspace/SPARC-API-DEV/app/manifest_name_to_discover_name.py:5084: DeprecationWarning: invalid escape sequence \s 'files/derivative/sub-6\sam-7\sub-6_sam-7_TH_P6-7p1_20x.jp2': 'files/derivative/sub-6/sam-7/sub-6_sam-7_TH_P6-7p1_20x.jp2', app/manifest_name_to_discover_name.py:5085 /home/cmiss/Jenkins/workspace/SPARC-API-DEV/app/manifest_name_to_discover_name.py:5085: DeprecationWarning: invalid escape sequence \s 'files/derivative/sub-7\sam-7\sub-7_sam-7_ChAT_NPcontrol_P7-7p4_20x.jp2': 'files/derivative/sub-7/sam-7/sub-7_sam-7_ChAT_NPcontrol_P7-7p4_20x.jp2', app/manifest_name_to_discover_name.py:5086 /home/cmiss/Jenkins/workspace/SPARC-API-DEV/app/manifest_name_to_discover_name.py:5086: DeprecationWarning: invalid escape sequence \s 'files/derivative/sub-7\sam-7\sub-7_sam-7_TH_NPcontrol_P7-7p1_20x.jp2': 'files/derivative/sub-7/sam-7/sub-7_sam-7_TH_NPcontrol_P7-7p1_20x.jp2', app/manifest_name_to_discover_name.py:5087 /home/cmiss/Jenkins/workspace/SPARC-API-DEV/app/manifest_name_to_discover_name.py:5087: DeprecationWarning: invalid escape sequence \s 'files/derivative/sub-8\sam-7\sub-8\sam-1\sub-8_sam-1_ChAT_P8-1p1_20x.jp2': 'files/derivative/sub-8/sam-1/sub-8_sam-1_ChAT_P8-1p1_20x (1).jp2', app/manifest_name_to_discover_name.py:5088 /home/cmiss/Jenkins/workspace/SPARC-API-DEV/app/manifest_name_to_discover_name.py:5088: DeprecationWarning: invalid escape sequence \s 'files/derivative/sub-8\sam-7\sub-8\sam-1\sub-8_sam-1_TH_P8-1p1_20x.jp2': 'files/derivative/sub-8/sam-1/sub-8_sam-1_TH_P8-1p1_20x.jp2', app/manifest_name_to_discover_name.py:5089 /home/cmiss/Jenkins/workspace/SPARC-API-DEV/app/manifest_name_to_discover_name.py:5089: DeprecationWarning: invalid escape sequence \s 'files/derivative/sub-8\sam-7\sub-8\sam-7\sub-8_sam-7_ChAT_P8-7p1_20x.jp2': 'files/derivative/sub-8/sam-7/sub-8_sam-7_ChAT_P8-7p1_20x.jp2', app/manifest_name_to_discover_name.py:5090 /home/cmiss/Jenkins/workspace/SPARC-API-DEV/app/manifest_name_to_discover_name.py:5090: DeprecationWarning: invalid escape sequence \s 'files/derivative/sub-8\sam-7\sub-8_sam-7_TH_P8-7p1_20x.jp2': 'files/derivative/sub-8/sam-7/sub-8_sam-7_TH_P8-7p1_20x.jp2', app/manifest_name_to_discover_name.py:5091 /home/cmiss/Jenkins/workspace/SPARC-API-DEV/app/manifest_name_to_discover_name.py:5091: DeprecationWarning: invalid escape sequence \s 'files/derivative/sub-9\sam-3\sub-9_sam-3_ChAT_P9-3p1_20x.jp2': 'files/derivative/sub-9/sam-3/sub-9_sam-3_ChAT_P9-3p1_20x.jp2', app/manifest_name_to_discover_name.py:5092 /home/cmiss/Jenkins/workspace/SPARC-API-DEV/app/manifest_name_to_discover_name.py:5092: DeprecationWarning: invalid escape sequence \s 'files/derivative/sub-9\sam-3\sub-9_sam-3_TH_P9-3p3_20x.jp2': 'files/derivative/sub-9/sam-3/sub-9_sam-3_TH_P9-3p3_20x.jp2', app/manifest_name_to_discover_name.py:5093 /home/cmiss/Jenkins/workspace/SPARC-API-DEV/app/manifest_name_to_discover_name.py:5093: DeprecationWarning: invalid escape sequence \s 'files/derivative/sub-10\sam-1\sub-10_sam-1_ChAT_P10-1p1_20x.jp2': 'files/derivative/sub-10/sam-1/sub-10_sam-1_ChAT_P10-1p1_20x (1).jp2', app/manifest_name_to_discover_name.py:5094 /home/cmiss/Jenkins/workspace/SPARC-API-DEV/app/manifest_name_to_discover_name.py:5094: DeprecationWarning: invalid escape sequence \s 'files/derivative/sub-10\sam-1\sub-10_sam-1_TH_P10-1p1_20x.jp2': 'files/derivative/sub-10/sam-1/sub-10_sam-1_TH_P10-1p1_20x.jp2', app/manifest_name_to_discover_name.py:5095 /home/cmiss/Jenkins/workspace/SPARC-API-DEV/app/manifest_name_to_discover_name.py:5095: DeprecationWarning: invalid escape sequence \s 'files/derivative/sub-11\sam-1\sub-11_sam-1_ChAT_P11-1p2_20x.jp2': 'files/derivative/sub-11/sam-1/sub-11_sam-1_ChAT_P11-1p2_20x.jp2', app/manifest_name_to_discover_name.py:5096 /home/cmiss/Jenkins/workspace/SPARC-API-DEV/app/manifest_name_to_discover_name.py:5096: DeprecationWarning: invalid escape sequence \s 'files/derivative/sub-11\sam-1\sub-11_sam-1_TH_P11-1p1_20x.jp2': 'files/derivative/sub-11/sam-1/sub-11_sam-1_TH_P11-1p1_20x.jp2', app/manifest_name_to_discover_name.py:5097 /home/cmiss/Jenkins/workspace/SPARC-API-DEV/app/manifest_name_to_discover_name.py:5097: DeprecationWarning: invalid escape sequence \s 'files/derivative/sub-11\sam-3\sub-11_sam-3_ChAT_P11-3p3_20x.jp2': 'files/derivative/sub-11/sam-3/sub-11_sam-3_ChAT_P11-3p3_20x.jp2', app/manifest_name_to_discover_name.py:5098 /home/cmiss/Jenkins/workspace/SPARC-API-DEV/app/manifest_name_to_discover_name.py:5098: DeprecationWarning: invalid escape sequence \s 'files/derivative/sub-11\sam-3\sub-11_sam-3_TH_P11-3p1_20x.jp2': 'files/derivative/sub-11/sam-3/sub-11_sam-3_TH_P11-3p1_20x (1).jp2', app/manifest_name_to_discover_name.py:5099 /home/cmiss/Jenkins/workspace/SPARC-API-DEV/app/manifest_name_to_discover_name.py:5099: DeprecationWarning: invalid escape sequence \s 'files/derivative/sub-12\sam-1\sub-12_sam-1_ChAT_P12-1p1_20x.jp2': 'files/derivative/sub-12/sam-1/sub-12_sam-1_ChAT_P12-1p1_20x.jp2', app/manifest_name_to_discover_name.py:5100 /home/cmiss/Jenkins/workspace/SPARC-API-DEV/app/manifest_name_to_discover_name.py:5100: DeprecationWarning: invalid escape sequence \s 'files/derivative/sub-12\sam-1\sub-12_sam-1_TH_P12-1p1_20x.jp2': 'files/derivative/sub-12/sam-1/sub-12_sam-1_TH_P12-1p1_20x.jp2', app/manifest_name_to_discover_name.py:5101 /home/cmiss/Jenkins/workspace/SPARC-API-DEV/app/manifest_name_to_discover_name.py:5101: DeprecationWarning: invalid escape sequence \s 'files/derivative/sub-12\sam-3\sub-12_sam-3_ChAT_P12-3p3_20x.jp2': 'files/derivative/sub-12/sam-3/sub-12_sam-3_ChAT_P12-3p3_20x.jp2', app/manifest_name_to_discover_name.py:5102 /home/cmiss/Jenkins/workspace/SPARC-API-DEV/app/manifest_name_to_discover_name.py:5102: DeprecationWarning: invalid escape sequence \s 'files/derivative/sub-12\sam-3\sub-12_sam-3_TH_P12-3p1_20x.jp2': 'files/derivative/sub-12/sam-3/sub-12_sam-3_TH_P12-3p1_20x.jp2', app/manifest_name_to_discover_name.py:5103 /home/cmiss/Jenkins/workspace/SPARC-API-DEV/app/manifest_name_to_discover_name.py:5103: DeprecationWarning: invalid escape sequence \s 'files/derivative/sub-13\sam-1\sub-13_sam-1_ChAT_P13-1p1_20x.jp2': 'files/derivative/sub-13/sam-1/sub-13_sam-1_ChAT_P13-1p1_20x.jp2', app/manifest_name_to_discover_name.py:5104 /home/cmiss/Jenkins/workspace/SPARC-API-DEV/app/manifest_name_to_discover_name.py:5104: DeprecationWarning: invalid escape sequence \s 'files/derivative/sub-13\sam-1\sub-13_sam-1_TH_P13-1p1_20x.jp2': 'files/derivative/sub-13/sam-1/sub-13_sam-1_TH_P13-1p1_20x.jp2', app/manifest_name_to_discover_name.py:5105 /home/cmiss/Jenkins/workspace/SPARC-API-DEV/app/manifest_name_to_discover_name.py:5105: DeprecationWarning: invalid escape sequence \s 'files/derivative/sub-13\sam-3\sub-13_sam-3_ChAT_P13-3p3_20x.jp2': 'files/derivative/sub-13/sam-3/sub-13_sam-3_ChAT_P13-3p3_20x.jp2', app/manifest_name_to_discover_name.py:5106 /home/cmiss/Jenkins/workspace/SPARC-API-DEV/app/manifest_name_to_discover_name.py:5106: DeprecationWarning: invalid escape sequence \s 'files/derivative/sub-13\sam-3\sub-13_sam-3_TH_P13-3p1_20x.jp2': 'files/derivative/sub-13/sam-3/sub-13_sam-3_TH_P13-3p1_20x.jp2', app/manifest_name_to_discover_name.py:5107 /home/cmiss/Jenkins/workspace/SPARC-API-DEV/app/manifest_name_to_discover_name.py:5107: DeprecationWarning: invalid escape sequence \s 'files/derivative/sub-14\sam-2\sub-14_sam-2_ChAT_P14-2p1_20x.jp2': 'files/derivative/sub-14/sam-2/sub-14_sam-2_ChAT_P14-2p1_20x.jp2', app/manifest_name_to_discover_name.py:5108 /home/cmiss/Jenkins/workspace/SPARC-API-DEV/app/manifest_name_to_discover_name.py:5108: DeprecationWarning: invalid escape sequence \s 'files/derivative/sub-14\sam-2\sub-14_sam-2_TH_P14-2p1_20x.jp2': 'files/derivative/sub-14/sam-2/sub-14_sam-2_TH_P14-2p1_20x.jp2', app/manifest_name_to_discover_name.py:5109 /home/cmiss/Jenkins/workspace/SPARC-API-DEV/app/manifest_name_to_discover_name.py:5109: DeprecationWarning: invalid escape sequence \s 'files/derivative/sub-14\sam-3\sub-14_sam-3_ChAT_P14-3p3_20x.jp2': 'files/derivative/sub-14/sam-3/sub-14_sam-3_ChAT_P14-3p3_20x (1).jp2', app/manifest_name_to_discover_name.py:5110 /home/cmiss/Jenkins/workspace/SPARC-API-DEV/app/manifest_name_to_discover_name.py:5110: DeprecationWarning: invalid escape sequence \s 'files/derivative/sub-14\sam-3\sub-14_sam-3_TH_P14-3p1_20x.jp2': 'files/derivative/sub-14/sam-3/sub-14_sam-3_TH_P14-3p1_20x.jp2', app/manifest_name_to_discover_name.py:5111 /home/cmiss/Jenkins/workspace/SPARC-API-DEV/app/manifest_name_to_discover_name.py:5111: DeprecationWarning: invalid escape sequence \s 'files/derivative/sub-15\sam-2\sub-15_sam-2_ChAT_P15-2p2_20x.jp2': 'files/derivative/sub-15/sam-2/sub-15_sam-2_ChAT_P15-2p2_20x.jp2', app/manifest_name_to_discover_name.py:5112 /home/cmiss/Jenkins/workspace/SPARC-API-DEV/app/manifest_name_to_discover_name.py:5112: DeprecationWarning: invalid escape sequence \s 'files/derivative/sub-15\sam-2\sub-15_sam-2_TH_P15-2p1_20x.jp2': 'files/derivative/sub-15/sam-2/sub-15_sam-2_TH_P15-2p1_20x.jp2', app/manifest_name_to_discover_name.py:5113 /home/cmiss/Jenkins/workspace/SPARC-API-DEV/app/manifest_name_to_discover_name.py:5113: DeprecationWarning: invalid escape sequence \s 'files/derivative/sub-15\sam-3\sub-15_sam-3_ChAT_P15-3p3_20x.jp2': 'files/derivative/sub-15/sam-3/sub-15_sam-3_ChAT_P15-3p3_20x.jp2', app/manifest_name_to_discover_name.py:5114 /home/cmiss/Jenkins/workspace/SPARC-API-DEV/app/manifest_name_to_discover_name.py:5114: DeprecationWarning: invalid escape sequence \s 'files/derivative/sub-15\sam-3\sub-15_sam-3_TH_P15-3p1_20x.jp2': 'files/derivative/sub-15/sam-3/sub-15_sam-3_TH_P15-3p1_20x.jp2', /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/nose/importer.py:12 /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/nose/importer.py:12: DeprecationWarning: the imp module is deprecated in favour of importlib; see the module's documentation for alternative uses from imp import find_module, load_module, acquire_lock, release_lock tests/test_health.py::test_request_response /home/cmiss/Jenkins/workspace/SPARC-API-DEV/tests/test_health.py:13: DeprecationWarning: Please use assertEqual instead. assert_equals("healthy", json_response.get("status")) -- Docs: https://docs.pytest.org/en/latest/warnings.html ============ 97 passed, 4 skipped, 50 warnings in 252.49s (0:04:12) ============ [Slack Notifications] found #887 as previous completed, non-aborted build Finished: SUCCESS