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Started by timer Started by timer Started by timer Started by timer Running as SYSTEM Building remotely on Ubuntu_18.04_bioeng49 (buildslave Testing) in workspace /home/cmiss/Jenkins/workspace/SPARC-API-DEV [WS-CLEANUP] Deleting project workspace... [WS-CLEANUP] Deferred wipeout is used... [WS-CLEANUP] Done The recommended git tool is: NONE No credentials specified Cloning the remote Git repository Cloning repository https://github.com/nih-sparc/sparc-api.git > git init /home/cmiss/Jenkins/workspace/SPARC-API-DEV # timeout=10 Fetching upstream changes from https://github.com/nih-sparc/sparc-api.git > git --version # timeout=10 > git --version # 'git version 2.25.1' > git fetch --tags --force --progress -- https://github.com/nih-sparc/sparc-api.git +refs/heads/*:refs/remotes/origin/* # timeout=10 > git config remote.origin.url https://github.com/nih-sparc/sparc-api.git # timeout=10 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10 Avoid second fetch > git rev-parse refs/remotes/origin/master^{commit} # timeout=10 Checking out Revision 7887c65bc51ec6d73f1ae6958338ddf77d98303e (refs/remotes/origin/master) > git config core.sparsecheckout # timeout=10 > git checkout -f 7887c65bc51ec6d73f1ae6958338ddf77d98303e # timeout=10 Commit message: "Merge pull request #204 from ddjnw1yu/broken-image-link" > git rev-list --no-walk 44e28f2f0c3b9474cef7c1d33f7e79e77e1a763e # timeout=10 [SPARC-API-DEV] $ /bin/sh -xe /tmp/shiningpanda3070580861381529446.sh + pwd + export PYTHONPATH=/home/cmiss/Jenkins/workspace/SPARC-API-DEV + export SCICRUNCH_HOST=https://scicrunch.org/api/1/elastic/SPARC_PortalDatasets_dev + export PROTOCOL_BUFFERS_PYTHON_IMPLEMENTATION=python + pip install -r requirements.txt Requirement already satisfied: api==0.0.7 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 1)) (0.0.7) Requirement already satisfied: pennsieve==6.1.1 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 2)) (6.1.1) Requirement already satisfied: boto3==1.17.67 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 3)) (1.17.67) Requirement already satisfied: botocore==1.20.67 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 4)) (1.20.67) Requirement already satisfied: certifi==2019.11.28 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 5)) (2019.11.28) Requirement already satisfied: chardet==3.0.4 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 6)) (3.0.4) Collecting Click==7.1.2 (from -r requirements.txt (line 7)) Using cached click-7.1.2-py2.py3-none-any.whl.metadata (2.9 kB) Requirement already satisfied: docutils==0.15.2 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 8)) (0.15.2) Requirement already satisfied: Flask==1.1.1 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 9)) (1.1.1) Requirement already satisfied: flask-marshmallow==0.10.1 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 10)) (0.10.1) Requirement already satisfied: flask-cors==3.0.8 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 11)) (3.0.8) Requirement already satisfied: gunicorn==20.0.4 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 12)) (20.0.4) Requirement already satisfied: idna==2.8 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 13)) (2.8) Requirement already satisfied: itsdangerous==1.1.0 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 14)) (1.1.0) Requirement already satisfied: Jinja2==2.11.3 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 15)) (2.11.3) Requirement already satisfied: jmespath==0.9.4 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 16)) (0.9.4) Requirement already satisfied: MarkupSafe==1.1.1 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 17)) (1.1.1) Requirement already satisfied: marshmallow==3.2.2 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 18)) (3.2.2) Requirement already satisfied: nose==1.3.7 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 19)) (1.3.7) Requirement already satisfied: osparc==0.4.3 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 20)) (0.4.3) Requirement already satisfied: pillow in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 21)) (10.3.0) Requirement already satisfied: public==2019.4.13 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 22)) (2019.4.13) Requirement already satisfied: pytest in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 23)) (5.4.3) Requirement already satisfied: pymongo==3.8.0 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 24)) (3.8.0) Requirement already satisfied: python-dateutil==2.8.0 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 25)) (2.8.0) Requirement already satisfied: python-dotenv==0.10.3 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 26)) (0.10.3) Requirement already satisfied: query-string==2019.4.13 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 27)) (2019.4.13) Requirement already satisfied: requests==2.25.1 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 28)) (2.25.1) Requirement already satisfied: s3transfer==0.4.2 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 29)) (0.4.2) Requirement already satisfied: sendgrid==6.9.7 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 30)) (6.9.7) Requirement already satisfied: six==1.13.0 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 31)) (1.13.0) Requirement already satisfied: SQLAlchemy==1.3.20 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 32)) (1.3.20) Requirement already satisfied: urllib3==1.26.4 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 33)) (1.26.4) Requirement already satisfied: Werkzeug==0.16.0 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 34)) (0.16.0) Requirement already satisfied: psycopg2-binary==2.9.5 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 35)) (2.9.5) Requirement already satisfied: APScheduler==3.7.0 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 36)) (3.7.0) Requirement already satisfied: google-api-python-client==2.52.0 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 37)) (2.52.0) Requirement already satisfied: oauth2client==4.1.3 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 38)) (4.1.3) Requirement already satisfied: algoliasearch==2.6.2 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 39)) (2.6.2) Requirement already satisfied: contentful==1.13.1 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 40)) (1.13.1) Requirement already satisfied: contentful_management==2.11.0 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 41)) (2.11.0) Requirement already satisfied: configparser>=3.5 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from pennsieve==6.1.1->-r requirements.txt (line 2)) (6.0.1) Requirement already satisfied: deprecated>=1.2.0 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from pennsieve==6.1.1->-r requirements.txt (line 2)) (1.2.14) Requirement already satisfied: future>=0.15.0 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from pennsieve==6.1.1->-r requirements.txt (line 2)) (1.0.0) Requirement already satisfied: futures in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from pennsieve==6.1.1->-r requirements.txt (line 2)) (3.0.5) Requirement already satisfied: protobuf>=3.2.0 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from pennsieve==6.1.1->-r requirements.txt (line 2)) (4.25.3) Requirement already satisfied: python-jose==3.2.0 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from pennsieve==6.1.1->-r requirements.txt (line 2)) (3.2.0) Requirement already satisfied: pytz>=2016 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from pennsieve==6.1.1->-r requirements.txt (line 2)) (2024.1) Requirement already satisfied: rsa==4.0 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from pennsieve==6.1.1->-r requirements.txt (line 2)) (4.0) Requirement already satisfied: semver>=2.8.0 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from pennsieve==6.1.1->-r requirements.txt (line 2)) (3.0.2) Requirement already satisfied: websocket-client>=0.57.0 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from pennsieve==6.1.1->-r requirements.txt (line 2)) (1.7.0) Requirement already satisfied: docopt>=0.6 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from pennsieve==6.1.1->-r requirements.txt (line 2)) (0.6.2) Requirement already satisfied: psutil>=5.4 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from pennsieve==6.1.1->-r requirements.txt (line 2)) (5.9.8) Requirement already satisfied: setuptools>=3.0 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from gunicorn==20.0.4->-r requirements.txt (line 12)) (69.2.0) Requirement already satisfied: python-http-client>=3.2.1 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from sendgrid==6.9.7->-r requirements.txt (line 30)) (3.3.7) Requirement already satisfied: starkbank-ecdsa>=2.0.1 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from sendgrid==6.9.7->-r requirements.txt (line 30)) (2.2.0) Requirement already satisfied: tzlocal~=2.0 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from APScheduler==3.7.0->-r requirements.txt (line 36)) (2.1) Requirement already satisfied: httplib2<1dev,>=0.15.0 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from google-api-python-client==2.52.0->-r requirements.txt (line 37)) (0.22.0) Requirement already satisfied: google-auth<3.0.0dev,>=1.19.0 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from google-api-python-client==2.52.0->-r requirements.txt (line 37)) (2.29.0) Requirement already satisfied: google-auth-httplib2>=0.1.0 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from google-api-python-client==2.52.0->-r requirements.txt (line 37)) (0.2.0) Requirement already satisfied: google-api-core!=2.0.*,!=2.1.*,!=2.2.*,!=2.3.0,<3.0.0dev,>=1.31.5 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from google-api-python-client==2.52.0->-r requirements.txt (line 37)) (2.18.0) Requirement already satisfied: uritemplate<5,>=3.0.1 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from google-api-python-client==2.52.0->-r requirements.txt (line 37)) (4.1.1) Requirement already satisfied: pyasn1>=0.1.7 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from oauth2client==4.1.3->-r requirements.txt (line 38)) (0.6.0) Requirement already satisfied: pyasn1-modules>=0.0.5 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from oauth2client==4.1.3->-r requirements.txt (line 38)) (0.4.0) Requirement already satisfied: ecdsa<0.15 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from python-jose==3.2.0->pennsieve==6.1.1->-r requirements.txt (line 2)) (0.14.1) Requirement already satisfied: py>=1.5.0 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from pytest->-r requirements.txt (line 23)) (1.11.0) Requirement already satisfied: packaging in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from pytest->-r requirements.txt (line 23)) (24.0) Requirement already satisfied: attrs>=17.4.0 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from pytest->-r requirements.txt (line 23)) (23.2.0) Requirement already satisfied: more-itertools>=4.0.0 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from pytest->-r requirements.txt (line 23)) (10.2.0) Requirement already satisfied: pluggy<1.0,>=0.12 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from pytest->-r requirements.txt (line 23)) (0.13.1) Requirement already satisfied: wcwidth in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from pytest->-r requirements.txt (line 23)) (0.2.13) Requirement already satisfied: wrapt<2,>=1.10 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from deprecated>=1.2.0->pennsieve==6.1.1->-r requirements.txt (line 2)) (1.16.0) Requirement already satisfied: googleapis-common-protos<2.0.dev0,>=1.56.2 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from google-api-core!=2.0.*,!=2.1.*,!=2.2.*,!=2.3.0,<3.0.0dev,>=1.31.5->google-api-python-client==2.52.0->-r requirements.txt (line 37)) (1.63.0) Requirement already satisfied: proto-plus<2.0.0dev,>=1.22.3 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from google-api-core!=2.0.*,!=2.1.*,!=2.2.*,!=2.3.0,<3.0.0dev,>=1.31.5->google-api-python-client==2.52.0->-r requirements.txt (line 37)) (1.23.0) Requirement already satisfied: cachetools<6.0,>=2.0.0 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from google-auth<3.0.0dev,>=1.19.0->google-api-python-client==2.52.0->-r requirements.txt (line 37)) (5.3.3) Requirement already satisfied: pyparsing!=3.0.0,!=3.0.1,!=3.0.2,!=3.0.3,<4,>=2.4.2 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from httplib2<1dev,>=0.15.0->google-api-python-client==2.52.0->-r requirements.txt (line 37)) (3.1.2) Using cached click-7.1.2-py2.py3-none-any.whl (82 kB) Installing collected packages: Click Attempting uninstall: Click Found existing installation: click 8.1.7 Uninstalling click-8.1.7: Successfully uninstalled click-8.1.7 ERROR: pip's dependency resolver does not currently take into account all the packages that are installed. This behaviour is the source of the following dependency conflicts. black 24.3.0 requires click>=8.0.0, but you have click 7.1.2 which is incompatible. Successfully installed Click-7.1.2 + pip install -r requirements-dev.txt Requirement already satisfied: pytest==5.4.3 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements-dev.txt (line 1)) (5.4.3) Requirement already satisfied: pennsieve==6.1.1 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements-dev.txt (line 2)) (6.1.1) Requirement already satisfied: black in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements-dev.txt (line 3)) (24.3.0) Requirement already satisfied: isort in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements-dev.txt (line 4)) (5.13.2) Requirement already satisfied: nose in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements-dev.txt (line 5)) (1.3.7) Requirement already satisfied: packaging in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements-dev.txt (line 6)) (24.0) Requirement already satisfied: py>=1.5.0 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from pytest==5.4.3->-r requirements-dev.txt (line 1)) (1.11.0) Requirement already satisfied: attrs>=17.4.0 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from pytest==5.4.3->-r requirements-dev.txt (line 1)) (23.2.0) Requirement already satisfied: more-itertools>=4.0.0 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from pytest==5.4.3->-r requirements-dev.txt (line 1)) (10.2.0) Requirement already satisfied: pluggy<1.0,>=0.12 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from pytest==5.4.3->-r requirements-dev.txt (line 1)) (0.13.1) Requirement already satisfied: wcwidth in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from pytest==5.4.3->-r requirements-dev.txt (line 1)) (0.2.13) Requirement already satisfied: boto3 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from pennsieve==6.1.1->-r requirements-dev.txt (line 2)) (1.17.67) Requirement already satisfied: configparser>=3.5 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from pennsieve==6.1.1->-r requirements-dev.txt (line 2)) (6.0.1) Requirement already satisfied: deprecated>=1.2.0 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from pennsieve==6.1.1->-r requirements-dev.txt (line 2)) (1.2.14) Requirement already satisfied: future>=0.15.0 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from pennsieve==6.1.1->-r requirements-dev.txt (line 2)) (1.0.0) Requirement already satisfied: futures in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from pennsieve==6.1.1->-r requirements-dev.txt (line 2)) (3.0.5) Requirement already satisfied: protobuf>=3.2.0 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from pennsieve==6.1.1->-r requirements-dev.txt (line 2)) (4.25.3) Requirement already satisfied: python-jose==3.2.0 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from pennsieve==6.1.1->-r requirements-dev.txt (line 2)) (3.2.0) Requirement already satisfied: pytz>=2016 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from pennsieve==6.1.1->-r requirements-dev.txt (line 2)) (2024.1) Requirement already satisfied: requests>=2.18 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from pennsieve==6.1.1->-r requirements-dev.txt (line 2)) (2.25.1) Requirement already satisfied: rsa==4.0 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from pennsieve==6.1.1->-r requirements-dev.txt (line 2)) (4.0) Requirement already satisfied: semver>=2.8.0 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from pennsieve==6.1.1->-r requirements-dev.txt (line 2)) (3.0.2) Requirement already satisfied: websocket-client>=0.57.0 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from pennsieve==6.1.1->-r requirements-dev.txt (line 2)) (1.7.0) Requirement already satisfied: docopt>=0.6 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from pennsieve==6.1.1->-r requirements-dev.txt (line 2)) (0.6.2) Requirement already satisfied: psutil>=5.4 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from pennsieve==6.1.1->-r requirements-dev.txt (line 2)) (5.9.8) Requirement already satisfied: python-dateutil>=2.8.0 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from pennsieve==6.1.1->-r requirements-dev.txt (line 2)) (2.8.0) Requirement already satisfied: six<2.0 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from python-jose==3.2.0->pennsieve==6.1.1->-r requirements-dev.txt (line 2)) (1.13.0) Requirement already satisfied: ecdsa<0.15 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from python-jose==3.2.0->pennsieve==6.1.1->-r requirements-dev.txt (line 2)) (0.14.1) Requirement already satisfied: pyasn1 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from python-jose==3.2.0->pennsieve==6.1.1->-r requirements-dev.txt (line 2)) (0.6.0) Collecting click>=8.0.0 (from black->-r requirements-dev.txt (line 3)) Using cached click-8.1.7-py3-none-any.whl.metadata (3.0 kB) Requirement already satisfied: mypy-extensions>=0.4.3 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from black->-r requirements-dev.txt (line 3)) (1.0.0) Requirement already satisfied: pathspec>=0.9.0 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from black->-r requirements-dev.txt (line 3)) (0.12.1) Requirement already satisfied: platformdirs>=2 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from black->-r requirements-dev.txt (line 3)) (4.2.0) Requirement already satisfied: tomli>=1.1.0 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from black->-r requirements-dev.txt (line 3)) (2.0.1) Requirement already satisfied: typing-extensions>=4.0.1 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from black->-r requirements-dev.txt (line 3)) (4.11.0) Requirement already satisfied: wrapt<2,>=1.10 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from deprecated>=1.2.0->pennsieve==6.1.1->-r requirements-dev.txt (line 2)) (1.16.0) Requirement already satisfied: chardet<5,>=3.0.2 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from requests>=2.18->pennsieve==6.1.1->-r requirements-dev.txt (line 2)) (3.0.4) Requirement already satisfied: idna<3,>=2.5 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from requests>=2.18->pennsieve==6.1.1->-r requirements-dev.txt (line 2)) (2.8) Requirement already satisfied: urllib3<1.27,>=1.21.1 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from requests>=2.18->pennsieve==6.1.1->-r requirements-dev.txt (line 2)) (1.26.4) Requirement already satisfied: certifi>=2017.4.17 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from requests>=2.18->pennsieve==6.1.1->-r requirements-dev.txt (line 2)) (2019.11.28) Requirement already satisfied: botocore<1.21.0,>=1.20.67 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from boto3->pennsieve==6.1.1->-r requirements-dev.txt (line 2)) (1.20.67) Requirement already satisfied: jmespath<1.0.0,>=0.7.1 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from boto3->pennsieve==6.1.1->-r requirements-dev.txt (line 2)) (0.9.4) Requirement already satisfied: s3transfer<0.5.0,>=0.4.0 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from boto3->pennsieve==6.1.1->-r requirements-dev.txt (line 2)) (0.4.2) Using cached click-8.1.7-py3-none-any.whl (97 kB) Installing collected packages: click Attempting uninstall: click Found existing installation: click 7.1.2 Uninstalling click-7.1.2: Successfully uninstalled click-7.1.2 Successfully installed click-8.1.7 + pytest ============================= test session starts ============================== platform linux -- Python 3.9.19, pytest-5.4.3, py-1.11.0, pluggy-0.13.1 rootdir: /home/cmiss/Jenkins/workspace/SPARC-API-DEV collected 101 items tests/test_api.py ................... [ 18%] tests/test_biolucida.py ............. [ 31%] tests/test_dataset_info.py .s..ss..... [ 42%] tests/test_health.py . [ 43%] tests/test_monthly_stats.py ...... [ 49%] tests/test_osparc.py .............. [ 63%] tests/test_pmr.py ..... [ 68%] tests/test_scicrunch.py ................s......... [ 94%] tests/test_segmentation_info.py .. [ 96%] tests/test_thumbnails.py ... [ 99%] tests/test_update_contentful_entries.py . [100%] =============================== warnings summary =============================== /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/apscheduler/__init__.py:1 /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/apscheduler/__init__.py:1: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html from pkg_resources import get_distribution, DistributionNotFound /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/marshmallow/__init__.py:17 /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/marshmallow/__init__.py:17: DeprecationWarning: distutils Version classes are deprecated. Use packaging.version instead. __version_info__ = tuple(LooseVersion(__version__).version) /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask_marshmallow/__init__.py:34 /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask_marshmallow/__init__.py:34: DeprecationWarning: distutils Version classes are deprecated. Use packaging.version instead. __version_info__ = tuple(LooseVersion(__version__).version) /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pennsieve/cache/cache_segment_pb2.py:19 /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pennsieve/cache/cache_segment_pb2.py:19: DeprecationWarning: Call to deprecated create function FileDescriptor(). Note: Create unlinked descriptors is going to go away. Please use get/find descriptors from generated code or query the descriptor_pool. DESCRIPTOR = _descriptor.FileDescriptor( /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pennsieve/cache/cache_segment_pb2.py:36 /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pennsieve/cache/cache_segment_pb2.py:36: DeprecationWarning: Call to deprecated create function FieldDescriptor(). Note: Create unlinked descriptors is going to go away. Please use get/find descriptors from generated code or query the descriptor_pool. _descriptor.FieldDescriptor( /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pennsieve/cache/cache_segment_pb2.py:53 /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pennsieve/cache/cache_segment_pb2.py:53: DeprecationWarning: Call to deprecated create function FieldDescriptor(). Note: Create unlinked descriptors is going to go away. Please use get/find descriptors from generated code or query the descriptor_pool. _descriptor.FieldDescriptor( /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pennsieve/cache/cache_segment_pb2.py:70 /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pennsieve/cache/cache_segment_pb2.py:70: DeprecationWarning: Call to deprecated create function FieldDescriptor(). Note: Create unlinked descriptors is going to go away. Please use get/find descriptors from generated code or query the descriptor_pool. _descriptor.FieldDescriptor( /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pennsieve/cache/cache_segment_pb2.py:29 /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pennsieve/cache/cache_segment_pb2.py:29: DeprecationWarning: Call to deprecated create function Descriptor(). Note: Create unlinked descriptors is going to go away. Please use get/find descriptors from generated code or query the descriptor_pool. _CACHESEGMENT = _descriptor.Descriptor( app/manifest_name_to_discover_name.py:5075 /home/cmiss/Jenkins/workspace/SPARC-API-DEV/app/manifest_name_to_discover_name.py:5075: DeprecationWarning: invalid escape sequence \s 'files/derivative/sub-4\sam-3\sub-4_sam-3_ChAT_P4-3p1_20x.jp2': 'files/derivative/sub-4/sam-3/sub-4_sam-3_ChAT_P4-3p1_20x.jp2', app/manifest_name_to_discover_name.py:5076 /home/cmiss/Jenkins/workspace/SPARC-API-DEV/app/manifest_name_to_discover_name.py:5076: DeprecationWarning: invalid escape sequence \s 'files/derivative/sub-4\sam-3\sub-4_sam-3_TH_P4-3p1_20x.jp2': 'files/derivative/sub-4/sam-3/sub-4_sam-3_TH_P4-3p1_20x.jp2', app/manifest_name_to_discover_name.py:5077 /home/cmiss/Jenkins/workspace/SPARC-API-DEV/app/manifest_name_to_discover_name.py:5077: DeprecationWarning: invalid escape sequence \s 'files/derivative/sub-5\sam-1\sub-5_sam-1_ChAT_P5-1p1_20x.jp2': 'files/derivative/sub-5/sam-1/sub-5_sam-1_ChAT_P5-1p1_20x.jp2', app/manifest_name_to_discover_name.py:5078 /home/cmiss/Jenkins/workspace/SPARC-API-DEV/app/manifest_name_to_discover_name.py:5078: DeprecationWarning: invalid escape sequence \s 'files/derivative/sub-5\sam-1\sub-5_sam-1_TH_P5-1p4_20x.jp2': 'files/derivative/sub-5/sam-1/sub-5_sam-1_TH_P5-1p4_20x.jp2', app/manifest_name_to_discover_name.py:5079 /home/cmiss/Jenkins/workspace/SPARC-API-DEV/app/manifest_name_to_discover_name.py:5079: DeprecationWarning: invalid escape sequence \s 'files/derivative/sub-5\sam-3\sub-5_sam-3_ChAT_P5-3p1_20x.jp2': 'files/derivative/sub-5/sam-3/sub-5_sam-3_ChAT_P5-3p1_20x.jp2', app/manifest_name_to_discover_name.py:5080 /home/cmiss/Jenkins/workspace/SPARC-API-DEV/app/manifest_name_to_discover_name.py:5080: DeprecationWarning: invalid escape sequence \s 'files/derivative/sub-5\sam-3\sub-5_sam-3_TH_P5-3p1_20x.jp2': 'files/derivative/sub-5/sam-3/sub-5_sam-3_TH_P5-3p1_20x.jp2', app/manifest_name_to_discover_name.py:5081 /home/cmiss/Jenkins/workspace/SPARC-API-DEV/app/manifest_name_to_discover_name.py:5081: DeprecationWarning: invalid escape sequence \s 'files/derivative/sub-6\sam-1\sub-6_sam-1_ChAT_NPcontrol_P6-1p1_20x.jp2': 'files/derivative/sub-6/sam-1/sub-6_sam-1_ChAT_NPcontrol_P6-1p1_20x.jp2', app/manifest_name_to_discover_name.py:5082 /home/cmiss/Jenkins/workspace/SPARC-API-DEV/app/manifest_name_to_discover_name.py:5082: DeprecationWarning: invalid escape sequence \s 'files/derivative/sub-6\sam-1\sub-6_sam-1_TH_NPcontrol_P6-1p1_20x.jp2': 'files/derivative/sub-6/sam-1/sub-6_sam-1_TH_NPcontrol_P6-1p1_20x.jp2', app/manifest_name_to_discover_name.py:5083 /home/cmiss/Jenkins/workspace/SPARC-API-DEV/app/manifest_name_to_discover_name.py:5083: DeprecationWarning: invalid escape sequence \s 'files/derivative/sub-6\sam-7\sub-6_sam-7_ChAT_P6-7p1_20x.jp2': 'files/derivative/sub-6/sam-7/sub-6_sam-7_ChAT_P6-7p1_20x.jp2', app/manifest_name_to_discover_name.py:5084 /home/cmiss/Jenkins/workspace/SPARC-API-DEV/app/manifest_name_to_discover_name.py:5084: DeprecationWarning: invalid escape sequence \s 'files/derivative/sub-6\sam-7\sub-6_sam-7_TH_P6-7p1_20x.jp2': 'files/derivative/sub-6/sam-7/sub-6_sam-7_TH_P6-7p1_20x.jp2', app/manifest_name_to_discover_name.py:5085 /home/cmiss/Jenkins/workspace/SPARC-API-DEV/app/manifest_name_to_discover_name.py:5085: DeprecationWarning: invalid escape sequence \s 'files/derivative/sub-7\sam-7\sub-7_sam-7_ChAT_NPcontrol_P7-7p4_20x.jp2': 'files/derivative/sub-7/sam-7/sub-7_sam-7_ChAT_NPcontrol_P7-7p4_20x.jp2', app/manifest_name_to_discover_name.py:5086 /home/cmiss/Jenkins/workspace/SPARC-API-DEV/app/manifest_name_to_discover_name.py:5086: DeprecationWarning: invalid escape sequence \s 'files/derivative/sub-7\sam-7\sub-7_sam-7_TH_NPcontrol_P7-7p1_20x.jp2': 'files/derivative/sub-7/sam-7/sub-7_sam-7_TH_NPcontrol_P7-7p1_20x.jp2', app/manifest_name_to_discover_name.py:5087 /home/cmiss/Jenkins/workspace/SPARC-API-DEV/app/manifest_name_to_discover_name.py:5087: DeprecationWarning: invalid escape sequence \s 'files/derivative/sub-8\sam-7\sub-8\sam-1\sub-8_sam-1_ChAT_P8-1p1_20x.jp2': 'files/derivative/sub-8/sam-7/sub-8/sam-1/sub-8_sam-1_ChAT_P8-1p1_20x.jp2', app/manifest_name_to_discover_name.py:5088 /home/cmiss/Jenkins/workspace/SPARC-API-DEV/app/manifest_name_to_discover_name.py:5088: DeprecationWarning: invalid escape sequence \s 'files/derivative/sub-8\sam-7\sub-8\sam-1\sub-8_sam-1_TH_P8-1p1_20x.jp2': 'files/derivative/sub-8/sam-7/sub-8/sam-1/sub-8_sam-1_TH_P8-1p1_20x.jp2', app/manifest_name_to_discover_name.py:5089 /home/cmiss/Jenkins/workspace/SPARC-API-DEV/app/manifest_name_to_discover_name.py:5089: DeprecationWarning: invalid escape sequence \s 'files/derivative/sub-8\sam-7\sub-8\sam-7\sub-8_sam-7_ChAT_P8-7p1_20x.jp2': 'files/derivative/sub-8/sam-7/sub-8/sam-7/sub-8_sam-7_ChAT_P8-7p1_20x.jp2', app/manifest_name_to_discover_name.py:5090 /home/cmiss/Jenkins/workspace/SPARC-API-DEV/app/manifest_name_to_discover_name.py:5090: DeprecationWarning: invalid escape sequence \s 'files/derivative/sub-8\sam-7\sub-8_sam-7_TH_P8-7p1_20x.jp2': 'files/derivative/sub-8/sam-7/sub-8_sam-7_TH_P8-7p1_20x.jp2', app/manifest_name_to_discover_name.py:5091 /home/cmiss/Jenkins/workspace/SPARC-API-DEV/app/manifest_name_to_discover_name.py:5091: DeprecationWarning: invalid escape sequence \s 'files/derivative/sub-9\sam-3\sub-9_sam-3_ChAT_P9-3p1_20x.jp2': 'files/derivative/sub-9/sam-3/sub-9_sam-3_ChAT_P9-3p1_20x.jp2', app/manifest_name_to_discover_name.py:5092 /home/cmiss/Jenkins/workspace/SPARC-API-DEV/app/manifest_name_to_discover_name.py:5092: DeprecationWarning: invalid escape sequence \s 'files/derivative/sub-9\sam-3\sub-9_sam-3_TH_P9-3p3_20x.jp2': 'files/derivative/sub-9/sam-3/sub-9_sam-3_TH_P9-3p3_20x.jp2', app/manifest_name_to_discover_name.py:5093 /home/cmiss/Jenkins/workspace/SPARC-API-DEV/app/manifest_name_to_discover_name.py:5093: DeprecationWarning: invalid escape sequence \s 'files/derivative/sub-10\sam-1\sub-10_sam-1_ChAT_P10-1p1_20x.jp2': 'files/derivative/sub-10/sam-1/sub-10_sam-1_ChAT_P10-1p1_20x.jp2', app/manifest_name_to_discover_name.py:5094 /home/cmiss/Jenkins/workspace/SPARC-API-DEV/app/manifest_name_to_discover_name.py:5094: DeprecationWarning: invalid escape sequence \s 'files/derivative/sub-10\sam-1\sub-10_sam-1_TH_P10-1p1_20x.jp2': 'files/derivative/sub-10/sam-1/sub-10_sam-1_TH_P10-1p1_20x.jp2', app/manifest_name_to_discover_name.py:5095 /home/cmiss/Jenkins/workspace/SPARC-API-DEV/app/manifest_name_to_discover_name.py:5095: DeprecationWarning: invalid escape sequence \s 'files/derivative/sub-11\sam-1\sub-11_sam-1_ChAT_P11-1p2_20x.jp2': 'files/derivative/sub-11/sam-1/sub-11_sam-1_ChAT_P11-1p2_20x.jp2', app/manifest_name_to_discover_name.py:5096 /home/cmiss/Jenkins/workspace/SPARC-API-DEV/app/manifest_name_to_discover_name.py:5096: DeprecationWarning: invalid escape sequence \s 'files/derivative/sub-11\sam-1\sub-11_sam-1_TH_P11-1p1_20x.jp2': 'files/derivative/sub-11/sam-1/sub-11_sam-1_TH_P11-1p1_20x.jp2', app/manifest_name_to_discover_name.py:5097 /home/cmiss/Jenkins/workspace/SPARC-API-DEV/app/manifest_name_to_discover_name.py:5097: DeprecationWarning: invalid escape sequence \s 'files/derivative/sub-11\sam-3\sub-11_sam-3_ChAT_P11-3p3_20x.jp2': 'files/derivative/sub-11/sam-3/sub-11_sam-3_ChAT_P11-3p3_20x.jp2', app/manifest_name_to_discover_name.py:5098 /home/cmiss/Jenkins/workspace/SPARC-API-DEV/app/manifest_name_to_discover_name.py:5098: DeprecationWarning: invalid escape sequence \s 'files/derivative/sub-11\sam-3\sub-11_sam-3_TH_P11-3p1_20x.jp2': 'files/derivative/sub-11/sam-3/sub-11_sam-3_TH_P11-3p1_20x.jp2', app/manifest_name_to_discover_name.py:5099 /home/cmiss/Jenkins/workspace/SPARC-API-DEV/app/manifest_name_to_discover_name.py:5099: DeprecationWarning: invalid escape sequence \s 'files/derivative/sub-12\sam-1\sub-12_sam-1_ChAT_P12-1p1_20x.jp2': 'files/derivative/sub-12/sam-1/sub-12_sam-1_ChAT_P12-1p1_20x.jp2', app/manifest_name_to_discover_name.py:5100 /home/cmiss/Jenkins/workspace/SPARC-API-DEV/app/manifest_name_to_discover_name.py:5100: DeprecationWarning: invalid escape sequence \s 'files/derivative/sub-12\sam-1\sub-12_sam-1_TH_P12-1p1_20x.jp2': 'files/derivative/sub-12/sam-1/sub-12_sam-1_TH_P12-1p1_20x.jp2', app/manifest_name_to_discover_name.py:5101 /home/cmiss/Jenkins/workspace/SPARC-API-DEV/app/manifest_name_to_discover_name.py:5101: DeprecationWarning: invalid escape sequence \s 'files/derivative/sub-12\sam-3\sub-12_sam-3_ChAT_P12-3p3_20x.jp2': 'files/derivative/sub-12/sam-3/sub-12_sam-3_ChAT_P12-3p3_20x.jp2', app/manifest_name_to_discover_name.py:5102 /home/cmiss/Jenkins/workspace/SPARC-API-DEV/app/manifest_name_to_discover_name.py:5102: DeprecationWarning: invalid escape sequence \s 'files/derivative/sub-12\sam-3\sub-12_sam-3_TH_P12-3p1_20x.jp2': 'files/derivative/sub-12/sam-3/sub-12_sam-3_TH_P12-3p1_20x.jp2', app/manifest_name_to_discover_name.py:5103 /home/cmiss/Jenkins/workspace/SPARC-API-DEV/app/manifest_name_to_discover_name.py:5103: DeprecationWarning: invalid escape sequence \s 'files/derivative/sub-13\sam-1\sub-13_sam-1_ChAT_P13-1p1_20x.jp2': 'files/derivative/sub-13/sam-1/sub-13_sam-1_ChAT_P13-1p1_20x.jp2', app/manifest_name_to_discover_name.py:5104 /home/cmiss/Jenkins/workspace/SPARC-API-DEV/app/manifest_name_to_discover_name.py:5104: DeprecationWarning: invalid escape sequence \s 'files/derivative/sub-13\sam-1\sub-13_sam-1_TH_P13-1p1_20x.jp2': 'files/derivative/sub-13/sam-1/sub-13_sam-1_TH_P13-1p1_20x.jp2', app/manifest_name_to_discover_name.py:5105 /home/cmiss/Jenkins/workspace/SPARC-API-DEV/app/manifest_name_to_discover_name.py:5105: DeprecationWarning: invalid escape sequence \s 'files/derivative/sub-13\sam-3\sub-13_sam-3_ChAT_P13-3p3_20x.jp2': 'files/derivative/sub-13/sam-3/sub-13_sam-3_ChAT_P13-3p3_20x.jp2', app/manifest_name_to_discover_name.py:5106 /home/cmiss/Jenkins/workspace/SPARC-API-DEV/app/manifest_name_to_discover_name.py:5106: DeprecationWarning: invalid escape sequence \s 'files/derivative/sub-13\sam-3\sub-13_sam-3_TH_P13-3p1_20x.jp2': 'files/derivative/sub-13/sam-3/sub-13_sam-3_TH_P13-3p1_20x.jp2', app/manifest_name_to_discover_name.py:5107 /home/cmiss/Jenkins/workspace/SPARC-API-DEV/app/manifest_name_to_discover_name.py:5107: DeprecationWarning: invalid escape sequence \s 'files/derivative/sub-14\sam-2\sub-14_sam-2_ChAT_P14-2p1_20x.jp2': 'files/derivative/sub-14/sam-2/sub-14_sam-2_ChAT_P14-2p1_20x.jp2', app/manifest_name_to_discover_name.py:5108 /home/cmiss/Jenkins/workspace/SPARC-API-DEV/app/manifest_name_to_discover_name.py:5108: DeprecationWarning: invalid escape sequence \s 'files/derivative/sub-14\sam-2\sub-14_sam-2_TH_P14-2p1_20x.jp2': 'files/derivative/sub-14/sam-2/sub-14_sam-2_TH_P14-2p1_20x.jp2', app/manifest_name_to_discover_name.py:5109 /home/cmiss/Jenkins/workspace/SPARC-API-DEV/app/manifest_name_to_discover_name.py:5109: DeprecationWarning: invalid escape sequence \s 'files/derivative/sub-14\sam-3\sub-14_sam-3_ChAT_P14-3p3_20x.jp2': 'files/derivative/sub-14/sam-3/sub-14_sam-3_ChAT_P14-3p3_20x.jp2', app/manifest_name_to_discover_name.py:5110 /home/cmiss/Jenkins/workspace/SPARC-API-DEV/app/manifest_name_to_discover_name.py:5110: DeprecationWarning: invalid escape sequence \s 'files/derivative/sub-14\sam-3\sub-14_sam-3_TH_P14-3p1_20x.jp2': 'files/derivative/sub-14/sam-3/sub-14_sam-3_TH_P14-3p1_20x.jp2', app/manifest_name_to_discover_name.py:5111 /home/cmiss/Jenkins/workspace/SPARC-API-DEV/app/manifest_name_to_discover_name.py:5111: DeprecationWarning: invalid escape sequence \s 'files/derivative/sub-15\sam-2\sub-15_sam-2_ChAT_P15-2p2_20x.jp2': 'files/derivative/sub-15/sam-2/sub-15_sam-2_ChAT_P15-2p2_20x.jp2', app/manifest_name_to_discover_name.py:5112 /home/cmiss/Jenkins/workspace/SPARC-API-DEV/app/manifest_name_to_discover_name.py:5112: DeprecationWarning: invalid escape sequence \s 'files/derivative/sub-15\sam-2\sub-15_sam-2_TH_P15-2p1_20x.jp2': 'files/derivative/sub-15/sam-2/sub-15_sam-2_TH_P15-2p1_20x.jp2', app/manifest_name_to_discover_name.py:5113 /home/cmiss/Jenkins/workspace/SPARC-API-DEV/app/manifest_name_to_discover_name.py:5113: DeprecationWarning: invalid escape sequence \s 'files/derivative/sub-15\sam-3\sub-15_sam-3_ChAT_P15-3p3_20x.jp2': 'files/derivative/sub-15/sam-3/sub-15_sam-3_ChAT_P15-3p3_20x.jp2', app/manifest_name_to_discover_name.py:5114 /home/cmiss/Jenkins/workspace/SPARC-API-DEV/app/manifest_name_to_discover_name.py:5114: DeprecationWarning: invalid escape sequence \s 'files/derivative/sub-15\sam-3\sub-15_sam-3_TH_P15-3p1_20x.jp2': 'files/derivative/sub-15/sam-3/sub-15_sam-3_TH_P15-3p1_20x.jp2' /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/nose/importer.py:12 /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/nose/importer.py:12: DeprecationWarning: the imp module is deprecated in favour of importlib; see the module's documentation for alternative uses from imp import find_module, load_module, acquire_lock, release_lock tests/test_health.py::test_request_response /home/cmiss/Jenkins/workspace/SPARC-API-DEV/tests/test_health.py:13: DeprecationWarning: Please use assertEqual instead. assert_equals("healthy", json_response.get("status")) -- Docs: https://docs.pytest.org/en/latest/warnings.html ============ 97 passed, 4 skipped, 50 warnings in 347.70s (0:05:47) ============ [Slack Notifications] found #868 as previous completed, non-aborted build Finished: SUCCESS