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Started by timer Running as SYSTEM Building remotely on Ubuntu_18.04_bioeng49 (buildslave Testing) in workspace /home/cmiss/Jenkins/workspace/Plot test [WS-CLEANUP] Deleting project workspace... [WS-CLEANUP] Deferred wipeout is used... [WS-CLEANUP] Done The recommended git tool is: NONE No credentials specified Cloning the remote Git repository Cloning repository https://github.com/ABI-Software/scicrunch-knowledge-testing.git > git init /home/cmiss/Jenkins/workspace/Plot test # timeout=10 Fetching upstream changes from https://github.com/ABI-Software/scicrunch-knowledge-testing.git > git --version # timeout=10 > git --version # 'git version 2.25.1' > git fetch --tags --force --progress -- https://github.com/ABI-Software/scicrunch-knowledge-testing.git +refs/heads/*:refs/remotes/origin/* # timeout=10 > git config remote.origin.url https://github.com/ABI-Software/scicrunch-knowledge-testing.git # timeout=10 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10 Avoid second fetch > git rev-parse refs/remotes/origin/main^{commit} # timeout=10 Checking out Revision befe2fbcd317e2d12b258757fdf0a280e339600b (refs/remotes/origin/main) > git config core.sparsecheckout # timeout=10 > git checkout -f befe2fbcd317e2d12b258757fdf0a280e339600b # timeout=10 Commit message: "Update biolucida_tests.py with updated API endpoint" > git rev-list --no-walk befe2fbcd317e2d12b258757fdf0a280e339600b # timeout=10 [Plot test] $ /bin/sh -xe /tmp/shiningpanda11947272215621561236.sh + export PENNSIEVE_API_HOST=https://api.pennsieve.io/discover + export SCICRUNCH_API_HOST=https://scicrunch.org/api/1/elastic/SPARC_PortalDatasets_pr + pip install -r requirements.txt Collecting mapknowledge@ https://github.com/AnatomicMaps/map-knowledge/releases/download/v0.13.1/mapknowledge-0.13.1-py3-none-any.whl (from -r requirements.txt (line 5)) Downloading https://github.com/AnatomicMaps/map-knowledge/releases/download/v0.13.1/mapknowledge-0.13.1-py3-none-any.whl (18 kB) Requirement already satisfied: requests==2.28.1 in /home/cmiss/Jenkins/shiningpanda/jobs/ac8a43b5/virtualenvs/d41d8cd9/lib/python3.8/site-packages (from -r requirements.txt (line 1)) (2.28.1) Requirement already satisfied: algoliasearch==2.6.2 in /home/cmiss/Jenkins/shiningpanda/jobs/ac8a43b5/virtualenvs/d41d8cd9/lib/python3.8/site-packages (from -r requirements.txt (line 2)) (2.6.2) Requirement already satisfied: boto3==1.17.67 in /home/cmiss/Jenkins/shiningpanda/jobs/ac8a43b5/virtualenvs/d41d8cd9/lib/python3.8/site-packages (from -r requirements.txt (line 3)) (1.17.67) Requirement already satisfied: ftfy==6.1.1 in /home/cmiss/Jenkins/shiningpanda/jobs/ac8a43b5/virtualenvs/d41d8cd9/lib/python3.8/site-packages (from -r requirements.txt (line 4)) (6.1.1) Requirement already satisfied: charset-normalizer<3,>=2 in /home/cmiss/Jenkins/shiningpanda/jobs/ac8a43b5/virtualenvs/d41d8cd9/lib/python3.8/site-packages (from requests==2.28.1->-r requirements.txt (line 1)) (2.1.1) Requirement already satisfied: idna<4,>=2.5 in /home/cmiss/Jenkins/shiningpanda/jobs/ac8a43b5/virtualenvs/d41d8cd9/lib/python3.8/site-packages (from requests==2.28.1->-r requirements.txt (line 1)) (3.7) Requirement already satisfied: urllib3<1.27,>=1.21.1 in /home/cmiss/Jenkins/shiningpanda/jobs/ac8a43b5/virtualenvs/d41d8cd9/lib/python3.8/site-packages (from requests==2.28.1->-r requirements.txt (line 1)) (1.26.19) Requirement already satisfied: certifi>=2017.4.17 in /home/cmiss/Jenkins/shiningpanda/jobs/ac8a43b5/virtualenvs/d41d8cd9/lib/python3.8/site-packages (from requests==2.28.1->-r requirements.txt (line 1)) (2024.7.4) Requirement already satisfied: botocore<1.21.0,>=1.20.67 in /home/cmiss/Jenkins/shiningpanda/jobs/ac8a43b5/virtualenvs/d41d8cd9/lib/python3.8/site-packages (from boto3==1.17.67->-r requirements.txt (line 3)) (1.20.112) Requirement already satisfied: jmespath<1.0.0,>=0.7.1 in /home/cmiss/Jenkins/shiningpanda/jobs/ac8a43b5/virtualenvs/d41d8cd9/lib/python3.8/site-packages (from boto3==1.17.67->-r requirements.txt (line 3)) (0.10.0) Requirement already satisfied: s3transfer<0.5.0,>=0.4.0 in /home/cmiss/Jenkins/shiningpanda/jobs/ac8a43b5/virtualenvs/d41d8cd9/lib/python3.8/site-packages (from boto3==1.17.67->-r requirements.txt (line 3)) (0.4.2) Requirement already satisfied: wcwidth>=0.2.5 in /home/cmiss/Jenkins/shiningpanda/jobs/ac8a43b5/virtualenvs/d41d8cd9/lib/python3.8/site-packages (from ftfy==6.1.1->-r requirements.txt (line 4)) (0.2.13) Requirement already satisfied: networkx<3.0.0,>=2.8.8 in /home/cmiss/Jenkins/shiningpanda/jobs/ac8a43b5/virtualenvs/d41d8cd9/lib/python3.8/site-packages (from mapknowledge@ https://github.com/AnatomicMaps/map-knowledge/releases/download/v0.13.1/mapknowledge-0.13.1-py3-none-any.whl->-r requirements.txt (line 5)) (2.8.8) Requirement already satisfied: rdflib<7.0.0,>=6.2.0 in /home/cmiss/Jenkins/shiningpanda/jobs/ac8a43b5/virtualenvs/d41d8cd9/lib/python3.8/site-packages (from mapknowledge@ https://github.com/AnatomicMaps/map-knowledge/releases/download/v0.13.1/mapknowledge-0.13.1-py3-none-any.whl->-r requirements.txt (line 5)) (6.3.2) Requirement already satisfied: python-dateutil<3.0.0,>=2.1 in /home/cmiss/Jenkins/shiningpanda/jobs/ac8a43b5/virtualenvs/d41d8cd9/lib/python3.8/site-packages (from botocore<1.21.0,>=1.20.67->boto3==1.17.67->-r requirements.txt (line 3)) (2.9.0.post0) Requirement already satisfied: isodate<0.7.0,>=0.6.0 in /home/cmiss/Jenkins/shiningpanda/jobs/ac8a43b5/virtualenvs/d41d8cd9/lib/python3.8/site-packages (from rdflib<7.0.0,>=6.2.0->mapknowledge@ https://github.com/AnatomicMaps/map-knowledge/releases/download/v0.13.1/mapknowledge-0.13.1-py3-none-any.whl->-r requirements.txt (line 5)) (0.6.1) Requirement already satisfied: pyparsing<4,>=2.1.0 in /home/cmiss/Jenkins/shiningpanda/jobs/ac8a43b5/virtualenvs/d41d8cd9/lib/python3.8/site-packages (from rdflib<7.0.0,>=6.2.0->mapknowledge@ https://github.com/AnatomicMaps/map-knowledge/releases/download/v0.13.1/mapknowledge-0.13.1-py3-none-any.whl->-r requirements.txt (line 5)) (3.1.2) Requirement already satisfied: six in /home/cmiss/Jenkins/shiningpanda/jobs/ac8a43b5/virtualenvs/d41d8cd9/lib/python3.8/site-packages (from isodate<0.7.0,>=0.6.0->rdflib<7.0.0,>=6.2.0->mapknowledge@ https://github.com/AnatomicMaps/map-knowledge/releases/download/v0.13.1/mapknowledge-0.13.1-py3-none-any.whl->-r requirements.txt (line 5)) (1.16.0) [notice] A new release of pip is available: 24.1.2 -> 25.0.1 [notice] To update, run: pip install --upgrade pip + python -m unittest tests/slow_tests/plot_tests.py E ====================================================================== ERROR: test_files_information (tests.slow_tests.plot_tests.PlotDatasetFilesTest) ---------------------------------------------------------------------- Traceback (most recent call last): File "/home/cmiss/Jenkins/shiningpanda/jobs/ac8a43b5/virtualenvs/d41d8cd9/lib/python3.8/site-packages/urllib3/connection.py", line 174, in _new_conn conn = connection.create_connection( File "/home/cmiss/Jenkins/shiningpanda/jobs/ac8a43b5/virtualenvs/d41d8cd9/lib/python3.8/site-packages/urllib3/util/connection.py", line 72, in create_connection for res in socket.getaddrinfo(host, port, family, socket.SOCK_STREAM): File "/usr/lib/python3.8/socket.py", line 918, in getaddrinfo for res in _socket.getaddrinfo(host, port, family, type, proto, flags): socket.gaierror: [Errno -2] Name or service not known During handling of the above exception, another exception occurred: Traceback (most recent call last): File "/home/cmiss/Jenkins/shiningpanda/jobs/ac8a43b5/virtualenvs/d41d8cd9/lib/python3.8/site-packages/urllib3/connectionpool.py", line 715, in urlopen httplib_response = self._make_request( File "/home/cmiss/Jenkins/shiningpanda/jobs/ac8a43b5/virtualenvs/d41d8cd9/lib/python3.8/site-packages/urllib3/connectionpool.py", line 404, in _make_request self._validate_conn(conn) File "/home/cmiss/Jenkins/shiningpanda/jobs/ac8a43b5/virtualenvs/d41d8cd9/lib/python3.8/site-packages/urllib3/connectionpool.py", line 1060, in _validate_conn conn.connect() File "/home/cmiss/Jenkins/shiningpanda/jobs/ac8a43b5/virtualenvs/d41d8cd9/lib/python3.8/site-packages/urllib3/connection.py", line 363, in connect self.sock = conn = self._new_conn() File "/home/cmiss/Jenkins/shiningpanda/jobs/ac8a43b5/virtualenvs/d41d8cd9/lib/python3.8/site-packages/urllib3/connection.py", line 186, in _new_conn raise NewConnectionError( urllib3.exceptions.NewConnectionError: <urllib3.connection.HTTPSConnection object at 0x7ffa63b72c40>: Failed to establish a new connection: [Errno -2] Name or service not known During handling of the above exception, another exception occurred: Traceback (most recent call last): File "/home/cmiss/Jenkins/shiningpanda/jobs/ac8a43b5/virtualenvs/d41d8cd9/lib/python3.8/site-packages/requests/adapters.py", line 489, in send resp = conn.urlopen( File "/home/cmiss/Jenkins/shiningpanda/jobs/ac8a43b5/virtualenvs/d41d8cd9/lib/python3.8/site-packages/urllib3/connectionpool.py", line 801, in urlopen retries = retries.increment( File "/home/cmiss/Jenkins/shiningpanda/jobs/ac8a43b5/virtualenvs/d41d8cd9/lib/python3.8/site-packages/urllib3/util/retry.py", line 594, in increment raise MaxRetryError(_pool, url, error or ResponseError(cause)) urllib3.exceptions.MaxRetryError: HTTPSConnectionPool(host='scicrunch.org', port=443): Max retries exceeded with url: /api/1/elastic/SPARC_PortalDatasets_pr/_search?preference=abiknowledgetesting&api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7ffa63b72c40>: Failed to establish a new connection: [Errno -2] Name or service not known')) During handling of the above exception, another exception occurred: Traceback (most recent call last): File "/home/cmiss/Jenkins/workspace/Plot test/tests/slow_tests/plot_tests.py", line 272, in test_files_information scicrunch_response = get_datasets(start, size) File "/home/cmiss/Jenkins/workspace/Plot test/tests/slow_tests/plot_tests.py", line 62, in get_datasets return requests.post(urljoin(scicrunch_host, '_search?preference=abiknowledgetesting'), json=scicrunch_request, params=params, headers=headers) File "/home/cmiss/Jenkins/shiningpanda/jobs/ac8a43b5/virtualenvs/d41d8cd9/lib/python3.8/site-packages/requests/api.py", line 115, in post return request("post", url, data=data, json=json, **kwargs) File "/home/cmiss/Jenkins/shiningpanda/jobs/ac8a43b5/virtualenvs/d41d8cd9/lib/python3.8/site-packages/requests/api.py", line 59, in request return session.request(method=method, url=url, **kwargs) File "/home/cmiss/Jenkins/shiningpanda/jobs/ac8a43b5/virtualenvs/d41d8cd9/lib/python3.8/site-packages/requests/sessions.py", line 587, in request resp = self.send(prep, **send_kwargs) File "/home/cmiss/Jenkins/shiningpanda/jobs/ac8a43b5/virtualenvs/d41d8cd9/lib/python3.8/site-packages/requests/sessions.py", line 701, in send r = adapter.send(request, **kwargs) File "/home/cmiss/Jenkins/shiningpanda/jobs/ac8a43b5/virtualenvs/d41d8cd9/lib/python3.8/site-packages/requests/adapters.py", line 565, in send raise ConnectionError(e, request=request) requests.exceptions.ConnectionError: HTTPSConnectionPool(host='scicrunch.org', port=443): Max retries exceeded with url: /api/1/elastic/SPARC_PortalDatasets_pr/_search?preference=abiknowledgetesting&api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7ffa63b72c40>: Failed to establish a new connection: [Errno -2] Name or service not known')) ---------------------------------------------------------------------- Ran 1 test in 58.897s FAILED (errors=1) Reports generated for 17 Reports generated for 30 Reports generated for 78 Reports generated for 7 Reports generated 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