Console Output

Started by timer
Running as SYSTEM
Building remotely on Ubuntu_18.04_bioeng49 (buildslave Testing) in workspace /home/cmiss/Jenkins/workspace/12-Labours-API
[WS-CLEANUP] Deleting project workspace...
[WS-CLEANUP] Deferred wipeout is used...
[WS-CLEANUP] Done
The recommended git tool is: NONE
No credentials specified
Cloning the remote Git repository
Cloning repository https://github.com/ABI-Software/12-labours-api.git
 > git init /home/cmiss/Jenkins/workspace/12-Labours-API # timeout=10
Fetching upstream changes from https://github.com/ABI-Software/12-labours-api.git
 > git --version # timeout=10
 > git --version # 'git version 2.25.1'
 > git fetch --tags --force --progress -- https://github.com/ABI-Software/12-labours-api.git +refs/heads/*:refs/remotes/origin/* # timeout=10
 > git config remote.origin.url https://github.com/ABI-Software/12-labours-api.git # timeout=10
 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10
Avoid second fetch
 > git rev-parse refs/remotes/origin/dev^{commit} # timeout=10
Checking out Revision a60644391d113696edba764f522c5b42ad254547 (refs/remotes/origin/dev)
 > git config core.sparsecheckout # timeout=10
 > git checkout -f a60644391d113696edba764f522c5b42ad254547 # timeout=10
Commit message: "Merge pull request #14 from david-jianwei-yu/fix-testing"
 > git rev-list --no-walk a60644391d113696edba764f522c5b42ad254547 # timeout=10
[12-Labours-API] $ /bin/sh -xe /tmp/shiningpanda16651747224396371233.sh
+ pwd
+ export PYTHONPATH=/home/cmiss/Jenkins/workspace/12-Labours-API
+ pip install -r requirements.txt
Requirement already satisfied: autopep8==1.6.0 in /home/cmiss/Jenkins/shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 1)) (1.6.0)
Requirement already satisfied: fastapi==0.80.0 in /home/cmiss/Jenkins/shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 2)) (0.80.0)
Requirement already satisfied: gen3==4.15.0 in /home/cmiss/Jenkins/shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 3)) (4.15.0)
Requirement already satisfied: gunicorn==20.1.0 in /home/cmiss/Jenkins/shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 4)) (20.1.0)
Requirement already satisfied: python-dotenv==0.20.0 in /home/cmiss/Jenkins/shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 5)) (0.20.0)
Requirement already satisfied: python-irodsclient==1.1.4 in /home/cmiss/Jenkins/shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 6)) (1.1.4)
Requirement already satisfied: sgqlc==16.0 in /home/cmiss/Jenkins/shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 7)) (16.0)
Requirement already satisfied: uvicorn==0.18.2 in /home/cmiss/Jenkins/shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 8)) (0.18.2)
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Requirement already satisfied: pycodestyle>=2.8.0 in /home/cmiss/Jenkins/shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from autopep8==1.6.0->-r requirements.txt (line 1)) (2.10.0)
Requirement already satisfied: starlette==0.19.1 in /home/cmiss/Jenkins/shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from fastapi==0.80.0->-r requirements.txt (line 2)) (0.19.1)
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Requirement already satisfied: pandas<2.0.0,>=1.4.2 in /home/cmiss/Jenkins/shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from gen3==4.15.0->-r requirements.txt (line 3)) (1.5.3)
Requirement already satisfied: dataclasses-json in /home/cmiss/Jenkins/shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from gen3==4.15.0->-r requirements.txt (line 3)) (0.5.7)
Requirement already satisfied: click in /home/cmiss/Jenkins/shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from gen3==4.15.0->-r requirements.txt (line 3)) (7.1.2)
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Requirement already satisfied: typing-extensions>=3.10.0 in /home/cmiss/Jenkins/shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from starlette==0.19.1->fastapi==0.80.0->-r requirements.txt (line 2)) (4.4.0)
Requirement already satisfied: anyio<5,>=3.4.0 in /home/cmiss/Jenkins/shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from starlette==0.19.1->fastapi==0.80.0->-r requirements.txt (line 2)) (3.6.2)
Requirement already satisfied: asyncio<4.0.0,>=3.4.3 in /home/cmiss/Jenkins/shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from drsclient<0.3.0,>=0.2.2->gen3==4.15.0->-r requirements.txt (line 3)) (3.4.3)
Requirement already satisfied: certifi in /home/cmiss/Jenkins/shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from httpx->gen3==4.15.0->-r requirements.txt (line 3)) (2022.12.7)
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Requirement already satisfied: rfc3986[idna2008]<2,>=1.3 in /home/cmiss/Jenkins/shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from httpx->gen3==4.15.0->-r requirements.txt (line 3)) (1.5.0)
Requirement already satisfied: sniffio in /home/cmiss/Jenkins/shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from httpx->gen3==4.15.0->-r requirements.txt (line 3)) (1.3.0)
Requirement already satisfied: pytz>=2020.1 in /home/cmiss/Jenkins/shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from pandas<2.0.0,>=1.4.2->gen3==4.15.0->-r requirements.txt (line 3)) (2022.7.1)
Requirement already satisfied: numpy>=1.20.3 in /home/cmiss/Jenkins/shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from pandas<2.0.0,>=1.4.2->gen3==4.15.0->-r requirements.txt (line 3)) (1.24.1)
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Requirement already satisfied: dictionaryutils<4.0.0,>=3.4.3 in /home/cmiss/Jenkins/shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from pypfb<1.0.0->gen3==4.15.0->-r requirements.txt (line 3)) (3.4.4)
Requirement already satisfied: importlib_metadata<2.0.0,>=1.3.0 in /home/cmiss/Jenkins/shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from pypfb<1.0.0->gen3==4.15.0->-r requirements.txt (line 3)) (1.7.0)
Requirement already satisfied: python-json-logger<0.2.0,>=0.1.11 in /home/cmiss/Jenkins/shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from pypfb<1.0.0->gen3==4.15.0->-r requirements.txt (line 3)) (0.1.11)
Requirement already satisfied: PyYAML<6.0.0,>=5.3.1 in /home/cmiss/Jenkins/shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from pypfb<1.0.0->gen3==4.15.0->-r requirements.txt (line 3)) (5.4.1)
Requirement already satisfied: gdcdictionary<2.0.0,>=1.2.0 in /home/cmiss/Jenkins/shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from pypfb<1.0.0->gen3==4.15.0->-r requirements.txt (line 3)) (1.2.0)
Requirement already satisfied: fastavro<=1.4.1 in /home/cmiss/Jenkins/shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from pypfb<1.0.0->gen3==4.15.0->-r requirements.txt (line 3)) (1.4.1)
Requirement already satisfied: async-timeout<5.0,>=4.0.0a3 in /home/cmiss/Jenkins/shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from aiohttp->gen3==4.15.0->-r requirements.txt (line 3)) (4.0.2)
Requirement already satisfied: multidict<7.0,>=4.5 in /home/cmiss/Jenkins/shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from aiohttp->gen3==4.15.0->-r requirements.txt (line 3)) (6.0.4)
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Requirement already satisfied: attrs>=17.3.0 in /home/cmiss/Jenkins/shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from aiohttp->gen3==4.15.0->-r requirements.txt (line 3)) (22.2.0)
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Requirement already satisfied: urllib3<1.27,>=1.21.1 in /home/cmiss/Jenkins/shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from requests->gen3==4.15.0->-r requirements.txt (line 3)) (1.26.14)
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Requirement already satisfied: pyrsistent>=0.14.0 in /home/cmiss/Jenkins/shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from jsonschema->gen3==4.15.0->-r requirements.txt (line 3)) (0.19.3)
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Requirement already satisfied: packaging>=17.0 in /home/cmiss/Jenkins/shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from marshmallow<4.0.0,>=3.3.0->dataclasses-json->gen3==4.15.0->-r requirements.txt (line 3)) (23.0)
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[notice] A new release of pip available: 22.3.1 -> 23.0
[notice] To update, run: pip install --upgrade pip
+ pip install -r requirements-dev.txt
Requirement already satisfied: pytest==7.1.2 in /home/cmiss/Jenkins/shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements-dev.txt (line 1)) (7.1.2)
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Requirement already satisfied: packaging in /home/cmiss/Jenkins/shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from pytest==7.1.2->-r requirements-dev.txt (line 1)) (23.0)
Requirement already satisfied: py>=1.8.2 in /home/cmiss/Jenkins/shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from pytest==7.1.2->-r requirements-dev.txt (line 1)) (1.11.0)
Requirement already satisfied: pluggy<2.0,>=0.12 in /home/cmiss/Jenkins/shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from pytest==7.1.2->-r requirements-dev.txt (line 1)) (1.0.0)
Requirement already satisfied: iniconfig in /home/cmiss/Jenkins/shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from pytest==7.1.2->-r requirements-dev.txt (line 1)) (2.0.0)

[notice] A new release of pip available: 22.3.1 -> 23.0
[notice] To update, run: pip install --upgrade pip
+ pytest
============================= test session starts ==============================
platform linux -- Python 3.9.16, pytest-7.1.2, pluggy-1.0.0
rootdir: /home/cmiss/Jenkins/workspace/12-Labours-API
plugins: anyio-3.6.2
collected 12 items

tests/test_api.py FFFFFFF.F..F                                           [100%]

=================================== FAILURES ===================================
____________________________ test_get_gen3_program _____________________________

client = <starlette.testclient.TestClient object at 0x7f822a278c70>

    def test_get_gen3_program(client):
        response = client.get("/program")
        result = response.json()
>       assert response.status_code == 200
E       assert 404 == 200
E        +  where 404 = <Response [404]>.status_code

tests/test_api.py:15: AssertionError
____________________________ test_get_gen3_project _____________________________

client = <starlette.testclient.TestClient object at 0x7f822a278f40>

    def test_get_gen3_project(client):
        response = client.get("/project/demo1")
        result = response.json()
>       assert response.status_code == 200
E       assert 404 == 200
E        +  where 404 = <Response [404]>.status_code

tests/test_api.py:23: AssertionError
___________________________ test_get_gen3_dictionary ___________________________

client = <starlette.testclient.TestClient object at 0x7f8229a0eeb0>

    def test_get_gen3_dictionary(client):
        pass_case = {
            "program": "demo1",
            "project": "12L",
        }
        response = client.post("/dictionary", json=pass_case)
>       assert response.status_code == 200
E       assert 404 == 200
E        +  where 404 = <Response [404]>.status_code

tests/test_api.py:37: AssertionError
__________________________ test_get_gen3_node_records __________________________

self = <urllib3.connection.HTTPSConnection object at 0x7f82298d9d00>

    def _new_conn(self):
        """Establish a socket connection and set nodelay settings on it.
    
        :return: New socket connection.
        """
        extra_kw = {}
        if self.source_address:
            extra_kw["source_address"] = self.source_address
    
        if self.socket_options:
            extra_kw["socket_options"] = self.socket_options
    
        try:
>           conn = connection.create_connection(
                (self._dns_host, self.port), self.timeout, **extra_kw
            )

../../shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connection.py:174: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

address = ('gen3.abi-ctt-ctp.cloud.edu.au', 443), timeout = None
source_address = None, socket_options = [(6, 1, 1)]

    def create_connection(
        address,
        timeout=socket._GLOBAL_DEFAULT_TIMEOUT,
        source_address=None,
        socket_options=None,
    ):
        """Connect to *address* and return the socket object.
    
        Convenience function.  Connect to *address* (a 2-tuple ``(host,
        port)``) and return the socket object.  Passing the optional
        *timeout* parameter will set the timeout on the socket instance
        before attempting to connect.  If no *timeout* is supplied, the
        global default timeout setting returned by :func:`socket.getdefaulttimeout`
        is used.  If *source_address* is set it must be a tuple of (host, port)
        for the socket to bind as a source address before making the connection.
        An host of '' or port 0 tells the OS to use the default.
        """
    
        host, port = address
        if host.startswith("["):
            host = host.strip("[]")
        err = None
    
        # Using the value from allowed_gai_family() in the context of getaddrinfo lets
        # us select whether to work with IPv4 DNS records, IPv6 records, or both.
        # The original create_connection function always returns all records.
        family = allowed_gai_family()
    
        try:
            host.encode("idna")
        except UnicodeError:
            return six.raise_from(
                LocationParseError(u"'%s', label empty or too long" % host), None
            )
    
        for res in socket.getaddrinfo(host, port, family, socket.SOCK_STREAM):
            af, socktype, proto, canonname, sa = res
            sock = None
            try:
                sock = socket.socket(af, socktype, proto)
    
                # If provided, set socket level options before connecting.
                _set_socket_options(sock, socket_options)
    
                if timeout is not socket._GLOBAL_DEFAULT_TIMEOUT:
                    sock.settimeout(timeout)
                if source_address:
                    sock.bind(source_address)
                sock.connect(sa)
                return sock
    
            except socket.error as e:
                err = e
                if sock is not None:
                    sock.close()
                    sock = None
    
        if err is not None:
>           raise err

../../shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/util/connection.py:95: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

address = ('gen3.abi-ctt-ctp.cloud.edu.au', 443), timeout = None
source_address = None, socket_options = [(6, 1, 1)]

    def create_connection(
        address,
        timeout=socket._GLOBAL_DEFAULT_TIMEOUT,
        source_address=None,
        socket_options=None,
    ):
        """Connect to *address* and return the socket object.
    
        Convenience function.  Connect to *address* (a 2-tuple ``(host,
        port)``) and return the socket object.  Passing the optional
        *timeout* parameter will set the timeout on the socket instance
        before attempting to connect.  If no *timeout* is supplied, the
        global default timeout setting returned by :func:`socket.getdefaulttimeout`
        is used.  If *source_address* is set it must be a tuple of (host, port)
        for the socket to bind as a source address before making the connection.
        An host of '' or port 0 tells the OS to use the default.
        """
    
        host, port = address
        if host.startswith("["):
            host = host.strip("[]")
        err = None
    
        # Using the value from allowed_gai_family() in the context of getaddrinfo lets
        # us select whether to work with IPv4 DNS records, IPv6 records, or both.
        # The original create_connection function always returns all records.
        family = allowed_gai_family()
    
        try:
            host.encode("idna")
        except UnicodeError:
            return six.raise_from(
                LocationParseError(u"'%s', label empty or too long" % host), None
            )
    
        for res in socket.getaddrinfo(host, port, family, socket.SOCK_STREAM):
            af, socktype, proto, canonname, sa = res
            sock = None
            try:
                sock = socket.socket(af, socktype, proto)
    
                # If provided, set socket level options before connecting.
                _set_socket_options(sock, socket_options)
    
                if timeout is not socket._GLOBAL_DEFAULT_TIMEOUT:
                    sock.settimeout(timeout)
                if source_address:
                    sock.bind(source_address)
>               sock.connect(sa)
E               ConnectionRefusedError: [Errno 111] Connection refused

../../shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/util/connection.py:85: ConnectionRefusedError

During handling of the above exception, another exception occurred:

self = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f82298d9fd0>
method = 'POST', url = '/user/credentials/cdis/access_token'
body = b'{"api_key": "eyJ0eXAiOiJKV1QiLCJhbGciOiJSUzI1NiIsImtpZCI6ImZlbmNlX2tleV8yMDIyLTA4LTIzVDE5OjI4OjM0WiJ9.eyJwdXIiOiJhcG...bXvYZ7reB-oMx0x-Eb_8HtmKNjNHiySNbJkPZrKUvvqvgBMNOCgAdKunVN-FKnrhPw", "key_id": "e86f9777-e754-4ba7-b845-42383403e5a2"}'
headers = {'User-Agent': 'python-requests/2.28.2', 'Accept-Encoding': 'gzip, deflate', 'Accept': '*/*', 'Connection': 'keep-alive', 'Content-Length': '771', 'Content-Type': 'application/json'}
retries = Retry(total=0, connect=None, read=False, redirect=None, status=None)
redirect = False, assert_same_host = False
timeout = Timeout(connect=None, read=None, total=None), pool_timeout = None
release_conn = False, chunked = False, body_pos = None
response_kw = {'decode_content': False, 'preload_content': False}
parsed_url = Url(scheme=None, auth=None, host=None, port=None, path='/user/credentials/cdis/access_token', query=None, fragment=None)
destination_scheme = None, conn = None, release_this_conn = True
http_tunnel_required = False, err = None, clean_exit = False

    def urlopen(
        self,
        method,
        url,
        body=None,
        headers=None,
        retries=None,
        redirect=True,
        assert_same_host=True,
        timeout=_Default,
        pool_timeout=None,
        release_conn=None,
        chunked=False,
        body_pos=None,
        **response_kw
    ):
        """
        Get a connection from the pool and perform an HTTP request. This is the
        lowest level call for making a request, so you'll need to specify all
        the raw details.
    
        .. note::
    
           More commonly, it's appropriate to use a convenience method provided
           by :class:`.RequestMethods`, such as :meth:`request`.
    
        .. note::
    
           `release_conn` will only behave as expected if
           `preload_content=False` because we want to make
           `preload_content=False` the default behaviour someday soon without
           breaking backwards compatibility.
    
        :param method:
            HTTP request method (such as GET, POST, PUT, etc.)
    
        :param url:
            The URL to perform the request on.
    
        :param body:
            Data to send in the request body, either :class:`str`, :class:`bytes`,
            an iterable of :class:`str`/:class:`bytes`, or a file-like object.
    
        :param headers:
            Dictionary of custom headers to send, such as User-Agent,
            If-None-Match, etc. If None, pool headers are used. If provided,
            these headers completely replace any pool-specific headers.
    
        :param retries:
            Configure the number of retries to allow before raising a
            :class:`~urllib3.exceptions.MaxRetryError` exception.
    
            Pass ``None`` to retry until you receive a response. Pass a
            :class:`~urllib3.util.retry.Retry` object for fine-grained control
            over different types of retries.
            Pass an integer number to retry connection errors that many times,
            but no other types of errors. Pass zero to never retry.
    
            If ``False``, then retries are disabled and any exception is raised
            immediately. Also, instead of raising a MaxRetryError on redirects,
            the redirect response will be returned.
    
        :type retries: :class:`~urllib3.util.retry.Retry`, False, or an int.
    
        :param redirect:
            If True, automatically handle redirects (status codes 301, 302,
            303, 307, 308). Each redirect counts as a retry. Disabling retries
            will disable redirect, too.
    
        :param assert_same_host:
            If ``True``, will make sure that the host of the pool requests is
            consistent else will raise HostChangedError. When ``False``, you can
            use the pool on an HTTP proxy and request foreign hosts.
    
        :param timeout:
            If specified, overrides the default timeout for this one
            request. It may be a float (in seconds) or an instance of
            :class:`urllib3.util.Timeout`.
    
        :param pool_timeout:
            If set and the pool is set to block=True, then this method will
            block for ``pool_timeout`` seconds and raise EmptyPoolError if no
            connection is available within the time period.
    
        :param release_conn:
            If False, then the urlopen call will not release the connection
            back into the pool once a response is received (but will release if
            you read the entire contents of the response such as when
            `preload_content=True`). This is useful if you're not preloading
            the response's content immediately. You will need to call
            ``r.release_conn()`` on the response ``r`` to return the connection
            back into the pool. If None, it takes the value of
            ``response_kw.get('preload_content', True)``.
    
        :param chunked:
            If True, urllib3 will send the body using chunked transfer
            encoding. Otherwise, urllib3 will send the body using the standard
            content-length form. Defaults to False.
    
        :param int body_pos:
            Position to seek to in file-like body in the event of a retry or
            redirect. Typically this won't need to be set because urllib3 will
            auto-populate the value when needed.
    
        :param \\**response_kw:
            Additional parameters are passed to
            :meth:`urllib3.response.HTTPResponse.from_httplib`
        """
    
        parsed_url = parse_url(url)
        destination_scheme = parsed_url.scheme
    
        if headers is None:
            headers = self.headers
    
        if not isinstance(retries, Retry):
            retries = Retry.from_int(retries, redirect=redirect, default=self.retries)
    
        if release_conn is None:
            release_conn = response_kw.get("preload_content", True)
    
        # Check host
        if assert_same_host and not self.is_same_host(url):
            raise HostChangedError(self, url, retries)
    
        # Ensure that the URL we're connecting to is properly encoded
        if url.startswith("/"):
            url = six.ensure_str(_encode_target(url))
        else:
            url = six.ensure_str(parsed_url.url)
    
        conn = None
    
        # Track whether `conn` needs to be released before
        # returning/raising/recursing. Update this variable if necessary, and
        # leave `release_conn` constant throughout the function. That way, if
        # the function recurses, the original value of `release_conn` will be
        # passed down into the recursive call, and its value will be respected.
        #
        # See issue #651 [1] for details.
        #
        # [1] <https://github.com/urllib3/urllib3/issues/651>
        release_this_conn = release_conn
    
        http_tunnel_required = connection_requires_http_tunnel(
            self.proxy, self.proxy_config, destination_scheme
        )
    
        # Merge the proxy headers. Only done when not using HTTP CONNECT. We
        # have to copy the headers dict so we can safely change it without those
        # changes being reflected in anyone else's copy.
        if not http_tunnel_required:
            headers = headers.copy()
            headers.update(self.proxy_headers)
    
        # Must keep the exception bound to a separate variable or else Python 3
        # complains about UnboundLocalError.
        err = None
    
        # Keep track of whether we cleanly exited the except block. This
        # ensures we do proper cleanup in finally.
        clean_exit = False
    
        # Rewind body position, if needed. Record current position
        # for future rewinds in the event of a redirect/retry.
        body_pos = set_file_position(body, body_pos)
    
        try:
            # Request a connection from the queue.
            timeout_obj = self._get_timeout(timeout)
            conn = self._get_conn(timeout=pool_timeout)
    
            conn.timeout = timeout_obj.connect_timeout
    
            is_new_proxy_conn = self.proxy is not None and not getattr(
                conn, "sock", None
            )
            if is_new_proxy_conn and http_tunnel_required:
                self._prepare_proxy(conn)
    
            # Make the request on the httplib connection object.
>           httplib_response = self._make_request(
                conn,
                method,
                url,
                timeout=timeout_obj,
                body=body,
                headers=headers,
                chunked=chunked,
            )

../../shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py:703: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f82298d9fd0>
conn = <urllib3.connection.HTTPSConnection object at 0x7f82298d9d00>
method = 'POST', url = '/user/credentials/cdis/access_token'
timeout = Timeout(connect=None, read=None, total=None), chunked = False
httplib_request_kw = {'body': b'{"api_key": "eyJ0eXAiOiJKV1QiLCJhbGciOiJSUzI1NiIsImtpZCI6ImZlbmNlX2tleV8yMDIyLTA4LTIzVDE5OjI4OjM0WiJ9.eyJwd...p, deflate', 'Accept': '*/*', 'Connection': 'keep-alive', 'Content-Length': '771', 'Content-Type': 'application/json'}}
timeout_obj = Timeout(connect=None, read=None, total=None)

    def _make_request(
        self, conn, method, url, timeout=_Default, chunked=False, **httplib_request_kw
    ):
        """
        Perform a request on a given urllib connection object taken from our
        pool.
    
        :param conn:
            a connection from one of our connection pools
    
        :param timeout:
            Socket timeout in seconds for the request. This can be a
            float or integer, which will set the same timeout value for
            the socket connect and the socket read, or an instance of
            :class:`urllib3.util.Timeout`, which gives you more fine-grained
            control over your timeouts.
        """
        self.num_requests += 1
    
        timeout_obj = self._get_timeout(timeout)
        timeout_obj.start_connect()
        conn.timeout = timeout_obj.connect_timeout
    
        # Trigger any extra validation we need to do.
        try:
>           self._validate_conn(conn)

../../shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py:386: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f82298d9fd0>
conn = <urllib3.connection.HTTPSConnection object at 0x7f82298d9d00>

    def _validate_conn(self, conn):
        """
        Called right before a request is made, after the socket is created.
        """
        super(HTTPSConnectionPool, self)._validate_conn(conn)
    
        # Force connect early to allow us to validate the connection.
        if not getattr(conn, "sock", None):  # AppEngine might not have  `.sock`
>           conn.connect()

../../shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py:1042: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connection.HTTPSConnection object at 0x7f82298d9d00>

    def connect(self):
        # Add certificate verification
>       self.sock = conn = self._new_conn()

../../shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connection.py:358: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connection.HTTPSConnection object at 0x7f82298d9d00>

    def _new_conn(self):
        """Establish a socket connection and set nodelay settings on it.
    
        :return: New socket connection.
        """
        extra_kw = {}
        if self.source_address:
            extra_kw["source_address"] = self.source_address
    
        if self.socket_options:
            extra_kw["socket_options"] = self.socket_options
    
        try:
            conn = connection.create_connection(
                (self._dns_host, self.port), self.timeout, **extra_kw
            )
    
        except SocketTimeout:
            raise ConnectTimeoutError(
                self,
                "Connection to %s timed out. (connect timeout=%s)"
                % (self.host, self.timeout),
            )
    
        except SocketError as e:
>           raise NewConnectionError(
                self, "Failed to establish a new connection: %s" % e
            )
E           urllib3.exceptions.NewConnectionError: <urllib3.connection.HTTPSConnection object at 0x7f82298d9d00>: Failed to establish a new connection: [Errno 111] Connection refused

../../shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connection.py:186: NewConnectionError

During handling of the above exception, another exception occurred:

self = <requests.adapters.HTTPAdapter object at 0x7f82298d96d0>
request = <PreparedRequest [POST]>, stream = False
timeout = Timeout(connect=None, read=None, total=None), verify = True
cert = None, proxies = OrderedDict()

    def send(
        self, request, stream=False, timeout=None, verify=True, cert=None, proxies=None
    ):
        """Sends PreparedRequest object. Returns Response object.
    
        :param request: The :class:`PreparedRequest <PreparedRequest>` being sent.
        :param stream: (optional) Whether to stream the request content.
        :param timeout: (optional) How long to wait for the server to send
            data before giving up, as a float, or a :ref:`(connect timeout,
            read timeout) <timeouts>` tuple.
        :type timeout: float or tuple or urllib3 Timeout object
        :param verify: (optional) Either a boolean, in which case it controls whether
            we verify the server's TLS certificate, or a string, in which case it
            must be a path to a CA bundle to use
        :param cert: (optional) Any user-provided SSL certificate to be trusted.
        :param proxies: (optional) The proxies dictionary to apply to the request.
        :rtype: requests.Response
        """
    
        try:
            conn = self.get_connection(request.url, proxies)
        except LocationValueError as e:
            raise InvalidURL(e, request=request)
    
        self.cert_verify(conn, request.url, verify, cert)
        url = self.request_url(request, proxies)
        self.add_headers(
            request,
            stream=stream,
            timeout=timeout,
            verify=verify,
            cert=cert,
            proxies=proxies,
        )
    
        chunked = not (request.body is None or "Content-Length" in request.headers)
    
        if isinstance(timeout, tuple):
            try:
                connect, read = timeout
                timeout = TimeoutSauce(connect=connect, read=read)
            except ValueError:
                raise ValueError(
                    f"Invalid timeout {timeout}. Pass a (connect, read) timeout tuple, "
                    f"or a single float to set both timeouts to the same value."
                )
        elif isinstance(timeout, TimeoutSauce):
            pass
        else:
            timeout = TimeoutSauce(connect=timeout, read=timeout)
    
        try:
            if not chunked:
>               resp = conn.urlopen(
                    method=request.method,
                    url=url,
                    body=request.body,
                    headers=request.headers,
                    redirect=False,
                    assert_same_host=False,
                    preload_content=False,
                    decode_content=False,
                    retries=self.max_retries,
                    timeout=timeout,
                )

../../shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/adapters.py:489: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f82298d9fd0>
method = 'POST', url = '/user/credentials/cdis/access_token'
body = b'{"api_key": "eyJ0eXAiOiJKV1QiLCJhbGciOiJSUzI1NiIsImtpZCI6ImZlbmNlX2tleV8yMDIyLTA4LTIzVDE5OjI4OjM0WiJ9.eyJwdXIiOiJhcG...bXvYZ7reB-oMx0x-Eb_8HtmKNjNHiySNbJkPZrKUvvqvgBMNOCgAdKunVN-FKnrhPw", "key_id": "e86f9777-e754-4ba7-b845-42383403e5a2"}'
headers = {'User-Agent': 'python-requests/2.28.2', 'Accept-Encoding': 'gzip, deflate', 'Accept': '*/*', 'Connection': 'keep-alive', 'Content-Length': '771', 'Content-Type': 'application/json'}
retries = Retry(total=0, connect=None, read=False, redirect=None, status=None)
redirect = False, assert_same_host = False
timeout = Timeout(connect=None, read=None, total=None), pool_timeout = None
release_conn = False, chunked = False, body_pos = None
response_kw = {'decode_content': False, 'preload_content': False}
parsed_url = Url(scheme=None, auth=None, host=None, port=None, path='/user/credentials/cdis/access_token', query=None, fragment=None)
destination_scheme = None, conn = None, release_this_conn = True
http_tunnel_required = False, err = None, clean_exit = False

    def urlopen(
        self,
        method,
        url,
        body=None,
        headers=None,
        retries=None,
        redirect=True,
        assert_same_host=True,
        timeout=_Default,
        pool_timeout=None,
        release_conn=None,
        chunked=False,
        body_pos=None,
        **response_kw
    ):
        """
        Get a connection from the pool and perform an HTTP request. This is the
        lowest level call for making a request, so you'll need to specify all
        the raw details.
    
        .. note::
    
           More commonly, it's appropriate to use a convenience method provided
           by :class:`.RequestMethods`, such as :meth:`request`.
    
        .. note::
    
           `release_conn` will only behave as expected if
           `preload_content=False` because we want to make
           `preload_content=False` the default behaviour someday soon without
           breaking backwards compatibility.
    
        :param method:
            HTTP request method (such as GET, POST, PUT, etc.)
    
        :param url:
            The URL to perform the request on.
    
        :param body:
            Data to send in the request body, either :class:`str`, :class:`bytes`,
            an iterable of :class:`str`/:class:`bytes`, or a file-like object.
    
        :param headers:
            Dictionary of custom headers to send, such as User-Agent,
            If-None-Match, etc. If None, pool headers are used. If provided,
            these headers completely replace any pool-specific headers.
    
        :param retries:
            Configure the number of retries to allow before raising a
            :class:`~urllib3.exceptions.MaxRetryError` exception.
    
            Pass ``None`` to retry until you receive a response. Pass a
            :class:`~urllib3.util.retry.Retry` object for fine-grained control
            over different types of retries.
            Pass an integer number to retry connection errors that many times,
            but no other types of errors. Pass zero to never retry.
    
            If ``False``, then retries are disabled and any exception is raised
            immediately. Also, instead of raising a MaxRetryError on redirects,
            the redirect response will be returned.
    
        :type retries: :class:`~urllib3.util.retry.Retry`, False, or an int.
    
        :param redirect:
            If True, automatically handle redirects (status codes 301, 302,
            303, 307, 308). Each redirect counts as a retry. Disabling retries
            will disable redirect, too.
    
        :param assert_same_host:
            If ``True``, will make sure that the host of the pool requests is
            consistent else will raise HostChangedError. When ``False``, you can
            use the pool on an HTTP proxy and request foreign hosts.
    
        :param timeout:
            If specified, overrides the default timeout for this one
            request. It may be a float (in seconds) or an instance of
            :class:`urllib3.util.Timeout`.
    
        :param pool_timeout:
            If set and the pool is set to block=True, then this method will
            block for ``pool_timeout`` seconds and raise EmptyPoolError if no
            connection is available within the time period.
    
        :param release_conn:
            If False, then the urlopen call will not release the connection
            back into the pool once a response is received (but will release if
            you read the entire contents of the response such as when
            `preload_content=True`). This is useful if you're not preloading
            the response's content immediately. You will need to call
            ``r.release_conn()`` on the response ``r`` to return the connection
            back into the pool. If None, it takes the value of
            ``response_kw.get('preload_content', True)``.
    
        :param chunked:
            If True, urllib3 will send the body using chunked transfer
            encoding. Otherwise, urllib3 will send the body using the standard
            content-length form. Defaults to False.
    
        :param int body_pos:
            Position to seek to in file-like body in the event of a retry or
            redirect. Typically this won't need to be set because urllib3 will
            auto-populate the value when needed.
    
        :param \\**response_kw:
            Additional parameters are passed to
            :meth:`urllib3.response.HTTPResponse.from_httplib`
        """
    
        parsed_url = parse_url(url)
        destination_scheme = parsed_url.scheme
    
        if headers is None:
            headers = self.headers
    
        if not isinstance(retries, Retry):
            retries = Retry.from_int(retries, redirect=redirect, default=self.retries)
    
        if release_conn is None:
            release_conn = response_kw.get("preload_content", True)
    
        # Check host
        if assert_same_host and not self.is_same_host(url):
            raise HostChangedError(self, url, retries)
    
        # Ensure that the URL we're connecting to is properly encoded
        if url.startswith("/"):
            url = six.ensure_str(_encode_target(url))
        else:
            url = six.ensure_str(parsed_url.url)
    
        conn = None
    
        # Track whether `conn` needs to be released before
        # returning/raising/recursing. Update this variable if necessary, and
        # leave `release_conn` constant throughout the function. That way, if
        # the function recurses, the original value of `release_conn` will be
        # passed down into the recursive call, and its value will be respected.
        #
        # See issue #651 [1] for details.
        #
        # [1] <https://github.com/urllib3/urllib3/issues/651>
        release_this_conn = release_conn
    
        http_tunnel_required = connection_requires_http_tunnel(
            self.proxy, self.proxy_config, destination_scheme
        )
    
        # Merge the proxy headers. Only done when not using HTTP CONNECT. We
        # have to copy the headers dict so we can safely change it without those
        # changes being reflected in anyone else's copy.
        if not http_tunnel_required:
            headers = headers.copy()
            headers.update(self.proxy_headers)
    
        # Must keep the exception bound to a separate variable or else Python 3
        # complains about UnboundLocalError.
        err = None
    
        # Keep track of whether we cleanly exited the except block. This
        # ensures we do proper cleanup in finally.
        clean_exit = False
    
        # Rewind body position, if needed. Record current position
        # for future rewinds in the event of a redirect/retry.
        body_pos = set_file_position(body, body_pos)
    
        try:
            # Request a connection from the queue.
            timeout_obj = self._get_timeout(timeout)
            conn = self._get_conn(timeout=pool_timeout)
    
            conn.timeout = timeout_obj.connect_timeout
    
            is_new_proxy_conn = self.proxy is not None and not getattr(
                conn, "sock", None
            )
            if is_new_proxy_conn and http_tunnel_required:
                self._prepare_proxy(conn)
    
            # Make the request on the httplib connection object.
            httplib_response = self._make_request(
                conn,
                method,
                url,
                timeout=timeout_obj,
                body=body,
                headers=headers,
                chunked=chunked,
            )
    
            # If we're going to release the connection in ``finally:``, then
            # the response doesn't need to know about the connection. Otherwise
            # it will also try to release it and we'll have a double-release
            # mess.
            response_conn = conn if not release_conn else None
    
            # Pass method to Response for length checking
            response_kw["request_method"] = method
    
            # Import httplib's response into our own wrapper object
            response = self.ResponseCls.from_httplib(
                httplib_response,
                pool=self,
                connection=response_conn,
                retries=retries,
                **response_kw
            )
    
            # Everything went great!
            clean_exit = True
    
        except EmptyPoolError:
            # Didn't get a connection from the pool, no need to clean up
            clean_exit = True
            release_this_conn = False
            raise
    
        except (
            TimeoutError,
            HTTPException,
            SocketError,
            ProtocolError,
            BaseSSLError,
            SSLError,
            CertificateError,
        ) as e:
            # Discard the connection for these exceptions. It will be
            # replaced during the next _get_conn() call.
            clean_exit = False
    
            def _is_ssl_error_message_from_http_proxy(ssl_error):
                # We're trying to detect the message 'WRONG_VERSION_NUMBER' but
                # SSLErrors are kinda all over the place when it comes to the message,
                # so we try to cover our bases here!
                message = " ".join(re.split("[^a-z]", str(ssl_error).lower()))
                return (
                    "wrong version number" in message or "unknown protocol" in message
                )
    
            # Try to detect a common user error with proxies which is to
            # set an HTTP proxy to be HTTPS when it should be 'http://'
            # (ie {'http': 'http://proxy', 'https': 'https://proxy'})
            # Instead we add a nice error message and point to a URL.
            if (
                isinstance(e, BaseSSLError)
                and self.proxy
                and _is_ssl_error_message_from_http_proxy(e)
                and conn.proxy
                and conn.proxy.scheme == "https"
            ):
                e = ProxyError(
                    "Your proxy appears to only use HTTP and not HTTPS, "
                    "try changing your proxy URL to be HTTP. See: "
                    "https://urllib3.readthedocs.io/en/1.26.x/advanced-usage.html"
                    "#https-proxy-error-http-proxy",
                    SSLError(e),
                )
            elif isinstance(e, (BaseSSLError, CertificateError)):
                e = SSLError(e)
            elif isinstance(e, (SocketError, NewConnectionError)) and self.proxy:
                e = ProxyError("Cannot connect to proxy.", e)
            elif isinstance(e, (SocketError, HTTPException)):
                e = ProtocolError("Connection aborted.", e)
    
>           retries = retries.increment(
                method, url, error=e, _pool=self, _stacktrace=sys.exc_info()[2]
            )

../../shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py:787: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = Retry(total=0, connect=None, read=False, redirect=None, status=None)
method = 'POST', url = '/user/credentials/cdis/access_token', response = None
error = NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7f82298d9d00>: Failed to establish a new connection: [Errno 111] Connection refused')
_pool = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f82298d9fd0>
_stacktrace = <traceback object at 0x7f822994e400>

    def increment(
        self,
        method=None,
        url=None,
        response=None,
        error=None,
        _pool=None,
        _stacktrace=None,
    ):
        """Return a new Retry object with incremented retry counters.
    
        :param response: A response object, or None, if the server did not
            return a response.
        :type response: :class:`~urllib3.response.HTTPResponse`
        :param Exception error: An error encountered during the request, or
            None if the response was received successfully.
    
        :return: A new ``Retry`` object.
        """
        if self.total is False and error:
            # Disabled, indicate to re-raise the error.
            raise six.reraise(type(error), error, _stacktrace)
    
        total = self.total
        if total is not None:
            total -= 1
    
        connect = self.connect
        read = self.read
        redirect = self.redirect
        status_count = self.status
        other = self.other
        cause = "unknown"
        status = None
        redirect_location = None
    
        if error and self._is_connection_error(error):
            # Connect retry?
            if connect is False:
                raise six.reraise(type(error), error, _stacktrace)
            elif connect is not None:
                connect -= 1
    
        elif error and self._is_read_error(error):
            # Read retry?
            if read is False or not self._is_method_retryable(method):
                raise six.reraise(type(error), error, _stacktrace)
            elif read is not None:
                read -= 1
    
        elif error:
            # Other retry?
            if other is not None:
                other -= 1
    
        elif response and response.get_redirect_location():
            # Redirect retry?
            if redirect is not None:
                redirect -= 1
            cause = "too many redirects"
            redirect_location = response.get_redirect_location()
            status = response.status
    
        else:
            # Incrementing because of a server error like a 500 in
            # status_forcelist and the given method is in the allowed_methods
            cause = ResponseError.GENERIC_ERROR
            if response and response.status:
                if status_count is not None:
                    status_count -= 1
                cause = ResponseError.SPECIFIC_ERROR.format(status_code=response.status)
                status = response.status
    
        history = self.history + (
            RequestHistory(method, url, error, status, redirect_location),
        )
    
        new_retry = self.new(
            total=total,
            connect=connect,
            read=read,
            redirect=redirect,
            status=status_count,
            other=other,
            history=history,
        )
    
        if new_retry.is_exhausted():
>           raise MaxRetryError(_pool, url, error or ResponseError(cause))
E           urllib3.exceptions.MaxRetryError: HTTPSConnectionPool(host='gen3.abi-ctt-ctp.cloud.edu.au', port=443): Max retries exceeded with url: /user/credentials/cdis/access_token (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7f82298d9d00>: Failed to establish a new connection: [Errno 111] Connection refused'))

../../shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/util/retry.py:592: MaxRetryError

During handling of the above exception, another exception occurred:

client = <starlette.testclient.TestClient object at 0x7f8229901c70>

    def test_get_gen3_node_records(client):
        NODE_TYPE = "experiment"
    
        pass_case = {
            "program": "demo1",
            "project": "12L",
        }
>       response = client.post(f"/records/{NODE_TYPE}", json=pass_case)

tests/test_api.py:62: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
../../shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/sessions.py:635: in post
    return self.request("POST", url, data=data, json=json, **kwargs)
../../shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages/starlette/testclient.py:476: in request
    return super().request(
../../shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/sessions.py:587: in request
    resp = self.send(prep, **send_kwargs)
../../shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/sessions.py:701: in send
    r = adapter.send(request, **kwargs)
../../shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages/starlette/testclient.py:270: in send
    raise exc
../../shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages/starlette/testclient.py:267: in send
    portal.call(self.app, scope, receive, send)
../../shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages/anyio/from_thread.py:283: in call
    return cast(T_Retval, self.start_task_soon(func, *args).result())
/usr/lib/python3.9/concurrent/futures/_base.py:446: in result
    return self.__get_result()
/usr/lib/python3.9/concurrent/futures/_base.py:391: in __get_result
    raise self._exception
../../shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages/anyio/from_thread.py:219: in _call_func
    retval = await retval
../../shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages/fastapi/applications.py:269: in __call__
    await super().__call__(scope, receive, send)
../../shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages/starlette/applications.py:124: in __call__
    await self.middleware_stack(scope, receive, send)
../../shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages/starlette/middleware/errors.py:184: in __call__
    raise exc
../../shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages/starlette/middleware/errors.py:162: in __call__
    await self.app(scope, receive, _send)
../../shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages/starlette/middleware/cors.py:84: in __call__
    await self.app(scope, receive, send)
../../shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages/starlette/exceptions.py:93: in __call__
    raise exc
../../shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages/starlette/exceptions.py:82: in __call__
    await self.app(scope, receive, sender)
../../shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages/fastapi/middleware/asyncexitstack.py:21: in __call__
    raise e
../../shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages/fastapi/middleware/asyncexitstack.py:18: in __call__
    await self.app(scope, receive, send)
../../shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages/starlette/routing.py:670: in __call__
    await route.handle(scope, receive, send)
../../shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages/starlette/routing.py:266: in handle
    await self.app(scope, receive, send)
../../shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages/starlette/routing.py:65: in app
    response = await func(request)
../../shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages/fastapi/routing.py:227: in app
    raw_response = await run_endpoint_function(
../../shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages/fastapi/routing.py:160: in run_endpoint_function
    return await dependant.call(**values)
app/main.py:234: in get_gen3_node_records
    node_record = SUBMISSION.export_node(
../../shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages/gen3/submission.py:384: in export_node
    output = requests.get(api_url, auth=self._auth_provider).text
../../shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/api.py:73: in get
    return request("get", url, params=params, **kwargs)
../../shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/api.py:59: in request
    return session.request(method=method, url=url, **kwargs)
../../shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/sessions.py:573: in request
    prep = self.prepare_request(req)
../../shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/sessions.py:484: in prepare_request
    p.prepare(
../../shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/models.py:372: in prepare
    self.prepare_auth(auth, url)
../../shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/models.py:603: in prepare_auth
    r = auth(self)
../../shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages/gen3/auth.py:266: in __call__
    request.headers["Authorization"] = self._get_auth_value()
../../shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages/gen3/auth.py:378: in _get_auth_value
    return "bearer " + self.get_access_token()
../../shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages/gen3/auth.py:367: in get_access_token
    return self.refresh_access_token(endpoint)
../../shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages/gen3/auth.py:304: in refresh_access_token
    self._access_token = get_access_token_with_key(self._refresh_token)
../../shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages/gen3/auth.py:75: in get_access_token_with_key
    resp = requests.post(auth_url, json=api_key)
../../shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/api.py:115: in post
    return request("post", url, data=data, json=json, **kwargs)
../../shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/api.py:59: in request
    return session.request(method=method, url=url, **kwargs)
../../shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/sessions.py:587: in request
    resp = self.send(prep, **send_kwargs)
../../shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/sessions.py:701: in send
    r = adapter.send(request, **kwargs)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <requests.adapters.HTTPAdapter object at 0x7f82298d96d0>
request = <PreparedRequest [POST]>, stream = False
timeout = Timeout(connect=None, read=None, total=None), verify = True
cert = None, proxies = OrderedDict()

    def send(
        self, request, stream=False, timeout=None, verify=True, cert=None, proxies=None
    ):
        """Sends PreparedRequest object. Returns Response object.
    
        :param request: The :class:`PreparedRequest <PreparedRequest>` being sent.
        :param stream: (optional) Whether to stream the request content.
        :param timeout: (optional) How long to wait for the server to send
            data before giving up, as a float, or a :ref:`(connect timeout,
            read timeout) <timeouts>` tuple.
        :type timeout: float or tuple or urllib3 Timeout object
        :param verify: (optional) Either a boolean, in which case it controls whether
            we verify the server's TLS certificate, or a string, in which case it
            must be a path to a CA bundle to use
        :param cert: (optional) Any user-provided SSL certificate to be trusted.
        :param proxies: (optional) The proxies dictionary to apply to the request.
        :rtype: requests.Response
        """
    
        try:
            conn = self.get_connection(request.url, proxies)
        except LocationValueError as e:
            raise InvalidURL(e, request=request)
    
        self.cert_verify(conn, request.url, verify, cert)
        url = self.request_url(request, proxies)
        self.add_headers(
            request,
            stream=stream,
            timeout=timeout,
            verify=verify,
            cert=cert,
            proxies=proxies,
        )
    
        chunked = not (request.body is None or "Content-Length" in request.headers)
    
        if isinstance(timeout, tuple):
            try:
                connect, read = timeout
                timeout = TimeoutSauce(connect=connect, read=read)
            except ValueError:
                raise ValueError(
                    f"Invalid timeout {timeout}. Pass a (connect, read) timeout tuple, "
                    f"or a single float to set both timeouts to the same value."
                )
        elif isinstance(timeout, TimeoutSauce):
            pass
        else:
            timeout = TimeoutSauce(connect=timeout, read=timeout)
    
        try:
            if not chunked:
                resp = conn.urlopen(
                    method=request.method,
                    url=url,
                    body=request.body,
                    headers=request.headers,
                    redirect=False,
                    assert_same_host=False,
                    preload_content=False,
                    decode_content=False,
                    retries=self.max_retries,
                    timeout=timeout,
                )
    
            # Send the request.
            else:
                if hasattr(conn, "proxy_pool"):
                    conn = conn.proxy_pool
    
                low_conn = conn._get_conn(timeout=DEFAULT_POOL_TIMEOUT)
    
                try:
                    skip_host = "Host" in request.headers
                    low_conn.putrequest(
                        request.method,
                        url,
                        skip_accept_encoding=True,
                        skip_host=skip_host,
                    )
    
                    for header, value in request.headers.items():
                        low_conn.putheader(header, value)
    
                    low_conn.endheaders()
    
                    for i in request.body:
                        low_conn.send(hex(len(i))[2:].encode("utf-8"))
                        low_conn.send(b"\r\n")
                        low_conn.send(i)
                        low_conn.send(b"\r\n")
                    low_conn.send(b"0\r\n\r\n")
    
                    # Receive the response from the server
                    r = low_conn.getresponse()
    
                    resp = HTTPResponse.from_httplib(
                        r,
                        pool=conn,
                        connection=low_conn,
                        preload_content=False,
                        decode_content=False,
                    )
                except Exception:
                    # If we hit any problems here, clean up the connection.
                    # Then, raise so that we can handle the actual exception.
                    low_conn.close()
                    raise
    
        except (ProtocolError, OSError) as err:
            raise ConnectionError(err, request=request)
    
        except MaxRetryError as e:
            if isinstance(e.reason, ConnectTimeoutError):
                # TODO: Remove this in 3.0.0: see #2811
                if not isinstance(e.reason, NewConnectionError):
                    raise ConnectTimeout(e, request=request)
    
            if isinstance(e.reason, ResponseError):
                raise RetryError(e, request=request)
    
            if isinstance(e.reason, _ProxyError):
                raise ProxyError(e, request=request)
    
            if isinstance(e.reason, _SSLError):
                # This branch is for urllib3 v1.22 and later.
                raise SSLError(e, request=request)
    
>           raise ConnectionError(e, request=request)
E           requests.exceptions.ConnectionError: HTTPSConnectionPool(host='gen3.abi-ctt-ctp.cloud.edu.au', port=443): Max retries exceeded with url: /user/credentials/cdis/access_token (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7f82298d9d00>: Failed to establish a new connection: [Errno 111] Connection refused'))

../../shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/adapters.py:565: ConnectionError
_____________________________ test_get_gen3_record _____________________________

self = <urllib3.connection.HTTPSConnection object at 0x7f82291fe880>

    def _new_conn(self):
        """Establish a socket connection and set nodelay settings on it.
    
        :return: New socket connection.
        """
        extra_kw = {}
        if self.source_address:
            extra_kw["source_address"] = self.source_address
    
        if self.socket_options:
            extra_kw["socket_options"] = self.socket_options
    
        try:
>           conn = connection.create_connection(
                (self._dns_host, self.port), self.timeout, **extra_kw
            )

../../shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connection.py:174: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

address = ('gen3.abi-ctt-ctp.cloud.edu.au', 443), timeout = None
source_address = None, socket_options = [(6, 1, 1)]

    def create_connection(
        address,
        timeout=socket._GLOBAL_DEFAULT_TIMEOUT,
        source_address=None,
        socket_options=None,
    ):
        """Connect to *address* and return the socket object.
    
        Convenience function.  Connect to *address* (a 2-tuple ``(host,
        port)``) and return the socket object.  Passing the optional
        *timeout* parameter will set the timeout on the socket instance
        before attempting to connect.  If no *timeout* is supplied, the
        global default timeout setting returned by :func:`socket.getdefaulttimeout`
        is used.  If *source_address* is set it must be a tuple of (host, port)
        for the socket to bind as a source address before making the connection.
        An host of '' or port 0 tells the OS to use the default.
        """
    
        host, port = address
        if host.startswith("["):
            host = host.strip("[]")
        err = None
    
        # Using the value from allowed_gai_family() in the context of getaddrinfo lets
        # us select whether to work with IPv4 DNS records, IPv6 records, or both.
        # The original create_connection function always returns all records.
        family = allowed_gai_family()
    
        try:
            host.encode("idna")
        except UnicodeError:
            return six.raise_from(
                LocationParseError(u"'%s', label empty or too long" % host), None
            )
    
        for res in socket.getaddrinfo(host, port, family, socket.SOCK_STREAM):
            af, socktype, proto, canonname, sa = res
            sock = None
            try:
                sock = socket.socket(af, socktype, proto)
    
                # If provided, set socket level options before connecting.
                _set_socket_options(sock, socket_options)
    
                if timeout is not socket._GLOBAL_DEFAULT_TIMEOUT:
                    sock.settimeout(timeout)
                if source_address:
                    sock.bind(source_address)
                sock.connect(sa)
                return sock
    
            except socket.error as e:
                err = e
                if sock is not None:
                    sock.close()
                    sock = None
    
        if err is not None:
>           raise err

../../shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/util/connection.py:95: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

address = ('gen3.abi-ctt-ctp.cloud.edu.au', 443), timeout = None
source_address = None, socket_options = [(6, 1, 1)]

    def create_connection(
        address,
        timeout=socket._GLOBAL_DEFAULT_TIMEOUT,
        source_address=None,
        socket_options=None,
    ):
        """Connect to *address* and return the socket object.
    
        Convenience function.  Connect to *address* (a 2-tuple ``(host,
        port)``) and return the socket object.  Passing the optional
        *timeout* parameter will set the timeout on the socket instance
        before attempting to connect.  If no *timeout* is supplied, the
        global default timeout setting returned by :func:`socket.getdefaulttimeout`
        is used.  If *source_address* is set it must be a tuple of (host, port)
        for the socket to bind as a source address before making the connection.
        An host of '' or port 0 tells the OS to use the default.
        """
    
        host, port = address
        if host.startswith("["):
            host = host.strip("[]")
        err = None
    
        # Using the value from allowed_gai_family() in the context of getaddrinfo lets
        # us select whether to work with IPv4 DNS records, IPv6 records, or both.
        # The original create_connection function always returns all records.
        family = allowed_gai_family()
    
        try:
            host.encode("idna")
        except UnicodeError:
            return six.raise_from(
                LocationParseError(u"'%s', label empty or too long" % host), None
            )
    
        for res in socket.getaddrinfo(host, port, family, socket.SOCK_STREAM):
            af, socktype, proto, canonname, sa = res
            sock = None
            try:
                sock = socket.socket(af, socktype, proto)
    
                # If provided, set socket level options before connecting.
                _set_socket_options(sock, socket_options)
    
                if timeout is not socket._GLOBAL_DEFAULT_TIMEOUT:
                    sock.settimeout(timeout)
                if source_address:
                    sock.bind(source_address)
>               sock.connect(sa)
E               ConnectionRefusedError: [Errno 111] Connection refused

../../shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/util/connection.py:85: ConnectionRefusedError

During handling of the above exception, another exception occurred:

self = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f82291feac0>
method = 'POST', url = '/user/credentials/cdis/access_token'
body = b'{"api_key": "eyJ0eXAiOiJKV1QiLCJhbGciOiJSUzI1NiIsImtpZCI6ImZlbmNlX2tleV8yMDIyLTA4LTIzVDE5OjI4OjM0WiJ9.eyJwdXIiOiJhcG...bXvYZ7reB-oMx0x-Eb_8HtmKNjNHiySNbJkPZrKUvvqvgBMNOCgAdKunVN-FKnrhPw", "key_id": "e86f9777-e754-4ba7-b845-42383403e5a2"}'
headers = {'User-Agent': 'python-requests/2.28.2', 'Accept-Encoding': 'gzip, deflate', 'Accept': '*/*', 'Connection': 'keep-alive', 'Content-Length': '771', 'Content-Type': 'application/json'}
retries = Retry(total=0, connect=None, read=False, redirect=None, status=None)
redirect = False, assert_same_host = False
timeout = Timeout(connect=None, read=None, total=None), pool_timeout = None
release_conn = False, chunked = False, body_pos = None
response_kw = {'decode_content': False, 'preload_content': False}
parsed_url = Url(scheme=None, auth=None, host=None, port=None, path='/user/credentials/cdis/access_token', query=None, fragment=None)
destination_scheme = None, conn = None, release_this_conn = True
http_tunnel_required = False, err = None, clean_exit = False

    def urlopen(
        self,
        method,
        url,
        body=None,
        headers=None,
        retries=None,
        redirect=True,
        assert_same_host=True,
        timeout=_Default,
        pool_timeout=None,
        release_conn=None,
        chunked=False,
        body_pos=None,
        **response_kw
    ):
        """
        Get a connection from the pool and perform an HTTP request. This is the
        lowest level call for making a request, so you'll need to specify all
        the raw details.
    
        .. note::
    
           More commonly, it's appropriate to use a convenience method provided
           by :class:`.RequestMethods`, such as :meth:`request`.
    
        .. note::
    
           `release_conn` will only behave as expected if
           `preload_content=False` because we want to make
           `preload_content=False` the default behaviour someday soon without
           breaking backwards compatibility.
    
        :param method:
            HTTP request method (such as GET, POST, PUT, etc.)
    
        :param url:
            The URL to perform the request on.
    
        :param body:
            Data to send in the request body, either :class:`str`, :class:`bytes`,
            an iterable of :class:`str`/:class:`bytes`, or a file-like object.
    
        :param headers:
            Dictionary of custom headers to send, such as User-Agent,
            If-None-Match, etc. If None, pool headers are used. If provided,
            these headers completely replace any pool-specific headers.
    
        :param retries:
            Configure the number of retries to allow before raising a
            :class:`~urllib3.exceptions.MaxRetryError` exception.
    
            Pass ``None`` to retry until you receive a response. Pass a
            :class:`~urllib3.util.retry.Retry` object for fine-grained control
            over different types of retries.
            Pass an integer number to retry connection errors that many times,
            but no other types of errors. Pass zero to never retry.
    
            If ``False``, then retries are disabled and any exception is raised
            immediately. Also, instead of raising a MaxRetryError on redirects,
            the redirect response will be returned.
    
        :type retries: :class:`~urllib3.util.retry.Retry`, False, or an int.
    
        :param redirect:
            If True, automatically handle redirects (status codes 301, 302,
            303, 307, 308). Each redirect counts as a retry. Disabling retries
            will disable redirect, too.
    
        :param assert_same_host:
            If ``True``, will make sure that the host of the pool requests is
            consistent else will raise HostChangedError. When ``False``, you can
            use the pool on an HTTP proxy and request foreign hosts.
    
        :param timeout:
            If specified, overrides the default timeout for this one
            request. It may be a float (in seconds) or an instance of
            :class:`urllib3.util.Timeout`.
    
        :param pool_timeout:
            If set and the pool is set to block=True, then this method will
            block for ``pool_timeout`` seconds and raise EmptyPoolError if no
            connection is available within the time period.
    
        :param release_conn:
            If False, then the urlopen call will not release the connection
            back into the pool once a response is received (but will release if
            you read the entire contents of the response such as when
            `preload_content=True`). This is useful if you're not preloading
            the response's content immediately. You will need to call
            ``r.release_conn()`` on the response ``r`` to return the connection
            back into the pool. If None, it takes the value of
            ``response_kw.get('preload_content', True)``.
    
        :param chunked:
            If True, urllib3 will send the body using chunked transfer
            encoding. Otherwise, urllib3 will send the body using the standard
            content-length form. Defaults to False.
    
        :param int body_pos:
            Position to seek to in file-like body in the event of a retry or
            redirect. Typically this won't need to be set because urllib3 will
            auto-populate the value when needed.
    
        :param \\**response_kw:
            Additional parameters are passed to
            :meth:`urllib3.response.HTTPResponse.from_httplib`
        """
    
        parsed_url = parse_url(url)
        destination_scheme = parsed_url.scheme
    
        if headers is None:
            headers = self.headers
    
        if not isinstance(retries, Retry):
            retries = Retry.from_int(retries, redirect=redirect, default=self.retries)
    
        if release_conn is None:
            release_conn = response_kw.get("preload_content", True)
    
        # Check host
        if assert_same_host and not self.is_same_host(url):
            raise HostChangedError(self, url, retries)
    
        # Ensure that the URL we're connecting to is properly encoded
        if url.startswith("/"):
            url = six.ensure_str(_encode_target(url))
        else:
            url = six.ensure_str(parsed_url.url)
    
        conn = None
    
        # Track whether `conn` needs to be released before
        # returning/raising/recursing. Update this variable if necessary, and
        # leave `release_conn` constant throughout the function. That way, if
        # the function recurses, the original value of `release_conn` will be
        # passed down into the recursive call, and its value will be respected.
        #
        # See issue #651 [1] for details.
        #
        # [1] <https://github.com/urllib3/urllib3/issues/651>
        release_this_conn = release_conn
    
        http_tunnel_required = connection_requires_http_tunnel(
            self.proxy, self.proxy_config, destination_scheme
        )
    
        # Merge the proxy headers. Only done when not using HTTP CONNECT. We
        # have to copy the headers dict so we can safely change it without those
        # changes being reflected in anyone else's copy.
        if not http_tunnel_required:
            headers = headers.copy()
            headers.update(self.proxy_headers)
    
        # Must keep the exception bound to a separate variable or else Python 3
        # complains about UnboundLocalError.
        err = None
    
        # Keep track of whether we cleanly exited the except block. This
        # ensures we do proper cleanup in finally.
        clean_exit = False
    
        # Rewind body position, if needed. Record current position
        # for future rewinds in the event of a redirect/retry.
        body_pos = set_file_position(body, body_pos)
    
        try:
            # Request a connection from the queue.
            timeout_obj = self._get_timeout(timeout)
            conn = self._get_conn(timeout=pool_timeout)
    
            conn.timeout = timeout_obj.connect_timeout
    
            is_new_proxy_conn = self.proxy is not None and not getattr(
                conn, "sock", None
            )
            if is_new_proxy_conn and http_tunnel_required:
                self._prepare_proxy(conn)
    
            # Make the request on the httplib connection object.
>           httplib_response = self._make_request(
                conn,
                method,
                url,
                timeout=timeout_obj,
                body=body,
                headers=headers,
                chunked=chunked,
            )

../../shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py:703: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f82291feac0>
conn = <urllib3.connection.HTTPSConnection object at 0x7f82291fe880>
method = 'POST', url = '/user/credentials/cdis/access_token'
timeout = Timeout(connect=None, read=None, total=None), chunked = False
httplib_request_kw = {'body': b'{"api_key": "eyJ0eXAiOiJKV1QiLCJhbGciOiJSUzI1NiIsImtpZCI6ImZlbmNlX2tleV8yMDIyLTA4LTIzVDE5OjI4OjM0WiJ9.eyJwd...p, deflate', 'Accept': '*/*', 'Connection': 'keep-alive', 'Content-Length': '771', 'Content-Type': 'application/json'}}
timeout_obj = Timeout(connect=None, read=None, total=None)

    def _make_request(
        self, conn, method, url, timeout=_Default, chunked=False, **httplib_request_kw
    ):
        """
        Perform a request on a given urllib connection object taken from our
        pool.
    
        :param conn:
            a connection from one of our connection pools
    
        :param timeout:
            Socket timeout in seconds for the request. This can be a
            float or integer, which will set the same timeout value for
            the socket connect and the socket read, or an instance of
            :class:`urllib3.util.Timeout`, which gives you more fine-grained
            control over your timeouts.
        """
        self.num_requests += 1
    
        timeout_obj = self._get_timeout(timeout)
        timeout_obj.start_connect()
        conn.timeout = timeout_obj.connect_timeout
    
        # Trigger any extra validation we need to do.
        try:
>           self._validate_conn(conn)

../../shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py:386: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f82291feac0>
conn = <urllib3.connection.HTTPSConnection object at 0x7f82291fe880>

    def _validate_conn(self, conn):
        """
        Called right before a request is made, after the socket is created.
        """
        super(HTTPSConnectionPool, self)._validate_conn(conn)
    
        # Force connect early to allow us to validate the connection.
        if not getattr(conn, "sock", None):  # AppEngine might not have  `.sock`
>           conn.connect()

../../shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py:1042: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connection.HTTPSConnection object at 0x7f82291fe880>

    def connect(self):
        # Add certificate verification
>       self.sock = conn = self._new_conn()

../../shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connection.py:358: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connection.HTTPSConnection object at 0x7f82291fe880>

    def _new_conn(self):
        """Establish a socket connection and set nodelay settings on it.
    
        :return: New socket connection.
        """
        extra_kw = {}
        if self.source_address:
            extra_kw["source_address"] = self.source_address
    
        if self.socket_options:
            extra_kw["socket_options"] = self.socket_options
    
        try:
            conn = connection.create_connection(
                (self._dns_host, self.port), self.timeout, **extra_kw
            )
    
        except SocketTimeout:
            raise ConnectTimeoutError(
                self,
                "Connection to %s timed out. (connect timeout=%s)"
                % (self.host, self.timeout),
            )
    
        except SocketError as e:
>           raise NewConnectionError(
                self, "Failed to establish a new connection: %s" % e
            )
E           urllib3.exceptions.NewConnectionError: <urllib3.connection.HTTPSConnection object at 0x7f82291fe880>: Failed to establish a new connection: [Errno 111] Connection refused

../../shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connection.py:186: NewConnectionError

During handling of the above exception, another exception occurred:

self = <requests.adapters.HTTPAdapter object at 0x7f8229a490a0>
request = <PreparedRequest [POST]>, stream = False
timeout = Timeout(connect=None, read=None, total=None), verify = True
cert = None, proxies = OrderedDict()

    def send(
        self, request, stream=False, timeout=None, verify=True, cert=None, proxies=None
    ):
        """Sends PreparedRequest object. Returns Response object.
    
        :param request: The :class:`PreparedRequest <PreparedRequest>` being sent.
        :param stream: (optional) Whether to stream the request content.
        :param timeout: (optional) How long to wait for the server to send
            data before giving up, as a float, or a :ref:`(connect timeout,
            read timeout) <timeouts>` tuple.
        :type timeout: float or tuple or urllib3 Timeout object
        :param verify: (optional) Either a boolean, in which case it controls whether
            we verify the server's TLS certificate, or a string, in which case it
            must be a path to a CA bundle to use
        :param cert: (optional) Any user-provided SSL certificate to be trusted.
        :param proxies: (optional) The proxies dictionary to apply to the request.
        :rtype: requests.Response
        """
    
        try:
            conn = self.get_connection(request.url, proxies)
        except LocationValueError as e:
            raise InvalidURL(e, request=request)
    
        self.cert_verify(conn, request.url, verify, cert)
        url = self.request_url(request, proxies)
        self.add_headers(
            request,
            stream=stream,
            timeout=timeout,
            verify=verify,
            cert=cert,
            proxies=proxies,
        )
    
        chunked = not (request.body is None or "Content-Length" in request.headers)
    
        if isinstance(timeout, tuple):
            try:
                connect, read = timeout
                timeout = TimeoutSauce(connect=connect, read=read)
            except ValueError:
                raise ValueError(
                    f"Invalid timeout {timeout}. Pass a (connect, read) timeout tuple, "
                    f"or a single float to set both timeouts to the same value."
                )
        elif isinstance(timeout, TimeoutSauce):
            pass
        else:
            timeout = TimeoutSauce(connect=timeout, read=timeout)
    
        try:
            if not chunked:
>               resp = conn.urlopen(
                    method=request.method,
                    url=url,
                    body=request.body,
                    headers=request.headers,
                    redirect=False,
                    assert_same_host=False,
                    preload_content=False,
                    decode_content=False,
                    retries=self.max_retries,
                    timeout=timeout,
                )

../../shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/adapters.py:489: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f82291feac0>
method = 'POST', url = '/user/credentials/cdis/access_token'
body = b'{"api_key": "eyJ0eXAiOiJKV1QiLCJhbGciOiJSUzI1NiIsImtpZCI6ImZlbmNlX2tleV8yMDIyLTA4LTIzVDE5OjI4OjM0WiJ9.eyJwdXIiOiJhcG...bXvYZ7reB-oMx0x-Eb_8HtmKNjNHiySNbJkPZrKUvvqvgBMNOCgAdKunVN-FKnrhPw", "key_id": "e86f9777-e754-4ba7-b845-42383403e5a2"}'
headers = {'User-Agent': 'python-requests/2.28.2', 'Accept-Encoding': 'gzip, deflate', 'Accept': '*/*', 'Connection': 'keep-alive', 'Content-Length': '771', 'Content-Type': 'application/json'}
retries = Retry(total=0, connect=None, read=False, redirect=None, status=None)
redirect = False, assert_same_host = False
timeout = Timeout(connect=None, read=None, total=None), pool_timeout = None
release_conn = False, chunked = False, body_pos = None
response_kw = {'decode_content': False, 'preload_content': False}
parsed_url = Url(scheme=None, auth=None, host=None, port=None, path='/user/credentials/cdis/access_token', query=None, fragment=None)
destination_scheme = None, conn = None, release_this_conn = True
http_tunnel_required = False, err = None, clean_exit = False

    def urlopen(
        self,
        method,
        url,
        body=None,
        headers=None,
        retries=None,
        redirect=True,
        assert_same_host=True,
        timeout=_Default,
        pool_timeout=None,
        release_conn=None,
        chunked=False,
        body_pos=None,
        **response_kw
    ):
        """
        Get a connection from the pool and perform an HTTP request. This is the
        lowest level call for making a request, so you'll need to specify all
        the raw details.
    
        .. note::
    
           More commonly, it's appropriate to use a convenience method provided
           by :class:`.RequestMethods`, such as :meth:`request`.
    
        .. note::
    
           `release_conn` will only behave as expected if
           `preload_content=False` because we want to make
           `preload_content=False` the default behaviour someday soon without
           breaking backwards compatibility.
    
        :param method:
            HTTP request method (such as GET, POST, PUT, etc.)
    
        :param url:
            The URL to perform the request on.
    
        :param body:
            Data to send in the request body, either :class:`str`, :class:`bytes`,
            an iterable of :class:`str`/:class:`bytes`, or a file-like object.
    
        :param headers:
            Dictionary of custom headers to send, such as User-Agent,
            If-None-Match, etc. If None, pool headers are used. If provided,
            these headers completely replace any pool-specific headers.
    
        :param retries:
            Configure the number of retries to allow before raising a
            :class:`~urllib3.exceptions.MaxRetryError` exception.
    
            Pass ``None`` to retry until you receive a response. Pass a
            :class:`~urllib3.util.retry.Retry` object for fine-grained control
            over different types of retries.
            Pass an integer number to retry connection errors that many times,
            but no other types of errors. Pass zero to never retry.
    
            If ``False``, then retries are disabled and any exception is raised
            immediately. Also, instead of raising a MaxRetryError on redirects,
            the redirect response will be returned.
    
        :type retries: :class:`~urllib3.util.retry.Retry`, False, or an int.
    
        :param redirect:
            If True, automatically handle redirects (status codes 301, 302,
            303, 307, 308). Each redirect counts as a retry. Disabling retries
            will disable redirect, too.
    
        :param assert_same_host:
            If ``True``, will make sure that the host of the pool requests is
            consistent else will raise HostChangedError. When ``False``, you can
            use the pool on an HTTP proxy and request foreign hosts.
    
        :param timeout:
            If specified, overrides the default timeout for this one
            request. It may be a float (in seconds) or an instance of
            :class:`urllib3.util.Timeout`.
    
        :param pool_timeout:
            If set and the pool is set to block=True, then this method will
            block for ``pool_timeout`` seconds and raise EmptyPoolError if no
            connection is available within the time period.
    
        :param release_conn:
            If False, then the urlopen call will not release the connection
            back into the pool once a response is received (but will release if
            you read the entire contents of the response such as when
            `preload_content=True`). This is useful if you're not preloading
            the response's content immediately. You will need to call
            ``r.release_conn()`` on the response ``r`` to return the connection
            back into the pool. If None, it takes the value of
            ``response_kw.get('preload_content', True)``.
    
        :param chunked:
            If True, urllib3 will send the body using chunked transfer
            encoding. Otherwise, urllib3 will send the body using the standard
            content-length form. Defaults to False.
    
        :param int body_pos:
            Position to seek to in file-like body in the event of a retry or
            redirect. Typically this won't need to be set because urllib3 will
            auto-populate the value when needed.
    
        :param \\**response_kw:
            Additional parameters are passed to
            :meth:`urllib3.response.HTTPResponse.from_httplib`
        """
    
        parsed_url = parse_url(url)
        destination_scheme = parsed_url.scheme
    
        if headers is None:
            headers = self.headers
    
        if not isinstance(retries, Retry):
            retries = Retry.from_int(retries, redirect=redirect, default=self.retries)
    
        if release_conn is None:
            release_conn = response_kw.get("preload_content", True)
    
        # Check host
        if assert_same_host and not self.is_same_host(url):
            raise HostChangedError(self, url, retries)
    
        # Ensure that the URL we're connecting to is properly encoded
        if url.startswith("/"):
            url = six.ensure_str(_encode_target(url))
        else:
            url = six.ensure_str(parsed_url.url)
    
        conn = None
    
        # Track whether `conn` needs to be released before
        # returning/raising/recursing. Update this variable if necessary, and
        # leave `release_conn` constant throughout the function. That way, if
        # the function recurses, the original value of `release_conn` will be
        # passed down into the recursive call, and its value will be respected.
        #
        # See issue #651 [1] for details.
        #
        # [1] <https://github.com/urllib3/urllib3/issues/651>
        release_this_conn = release_conn
    
        http_tunnel_required = connection_requires_http_tunnel(
            self.proxy, self.proxy_config, destination_scheme
        )
    
        # Merge the proxy headers. Only done when not using HTTP CONNECT. We
        # have to copy the headers dict so we can safely change it without those
        # changes being reflected in anyone else's copy.
        if not http_tunnel_required:
            headers = headers.copy()
            headers.update(self.proxy_headers)
    
        # Must keep the exception bound to a separate variable or else Python 3
        # complains about UnboundLocalError.
        err = None
    
        # Keep track of whether we cleanly exited the except block. This
        # ensures we do proper cleanup in finally.
        clean_exit = False
    
        # Rewind body position, if needed. Record current position
        # for future rewinds in the event of a redirect/retry.
        body_pos = set_file_position(body, body_pos)
    
        try:
            # Request a connection from the queue.
            timeout_obj = self._get_timeout(timeout)
            conn = self._get_conn(timeout=pool_timeout)
    
            conn.timeout = timeout_obj.connect_timeout
    
            is_new_proxy_conn = self.proxy is not None and not getattr(
                conn, "sock", None
            )
            if is_new_proxy_conn and http_tunnel_required:
                self._prepare_proxy(conn)
    
            # Make the request on the httplib connection object.
            httplib_response = self._make_request(
                conn,
                method,
                url,
                timeout=timeout_obj,
                body=body,
                headers=headers,
                chunked=chunked,
            )
    
            # If we're going to release the connection in ``finally:``, then
            # the response doesn't need to know about the connection. Otherwise
            # it will also try to release it and we'll have a double-release
            # mess.
            response_conn = conn if not release_conn else None
    
            # Pass method to Response for length checking
            response_kw["request_method"] = method
    
            # Import httplib's response into our own wrapper object
            response = self.ResponseCls.from_httplib(
                httplib_response,
                pool=self,
                connection=response_conn,
                retries=retries,
                **response_kw
            )
    
            # Everything went great!
            clean_exit = True
    
        except EmptyPoolError:
            # Didn't get a connection from the pool, no need to clean up
            clean_exit = True
            release_this_conn = False
            raise
    
        except (
            TimeoutError,
            HTTPException,
            SocketError,
            ProtocolError,
            BaseSSLError,
            SSLError,
            CertificateError,
        ) as e:
            # Discard the connection for these exceptions. It will be
            # replaced during the next _get_conn() call.
            clean_exit = False
    
            def _is_ssl_error_message_from_http_proxy(ssl_error):
                # We're trying to detect the message 'WRONG_VERSION_NUMBER' but
                # SSLErrors are kinda all over the place when it comes to the message,
                # so we try to cover our bases here!
                message = " ".join(re.split("[^a-z]", str(ssl_error).lower()))
                return (
                    "wrong version number" in message or "unknown protocol" in message
                )
    
            # Try to detect a common user error with proxies which is to
            # set an HTTP proxy to be HTTPS when it should be 'http://'
            # (ie {'http': 'http://proxy', 'https': 'https://proxy'})
            # Instead we add a nice error message and point to a URL.
            if (
                isinstance(e, BaseSSLError)
                and self.proxy
                and _is_ssl_error_message_from_http_proxy(e)
                and conn.proxy
                and conn.proxy.scheme == "https"
            ):
                e = ProxyError(
                    "Your proxy appears to only use HTTP and not HTTPS, "
                    "try changing your proxy URL to be HTTP. See: "
                    "https://urllib3.readthedocs.io/en/1.26.x/advanced-usage.html"
                    "#https-proxy-error-http-proxy",
                    SSLError(e),
                )
            elif isinstance(e, (BaseSSLError, CertificateError)):
                e = SSLError(e)
            elif isinstance(e, (SocketError, NewConnectionError)) and self.proxy:
                e = ProxyError("Cannot connect to proxy.", e)
            elif isinstance(e, (SocketError, HTTPException)):
                e = ProtocolError("Connection aborted.", e)
    
>           retries = retries.increment(
                method, url, error=e, _pool=self, _stacktrace=sys.exc_info()[2]
            )

../../shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py:787: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = Retry(total=0, connect=None, read=False, redirect=None, status=None)
method = 'POST', url = '/user/credentials/cdis/access_token', response = None
error = NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7f82291fe880>: Failed to establish a new connection: [Errno 111] Connection refused')
_pool = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f82291feac0>
_stacktrace = <traceback object at 0x7f8228fd2900>

    def increment(
        self,
        method=None,
        url=None,
        response=None,
        error=None,
        _pool=None,
        _stacktrace=None,
    ):
        """Return a new Retry object with incremented retry counters.
    
        :param response: A response object, or None, if the server did not
            return a response.
        :type response: :class:`~urllib3.response.HTTPResponse`
        :param Exception error: An error encountered during the request, or
            None if the response was received successfully.
    
        :return: A new ``Retry`` object.
        """
        if self.total is False and error:
            # Disabled, indicate to re-raise the error.
            raise six.reraise(type(error), error, _stacktrace)
    
        total = self.total
        if total is not None:
            total -= 1
    
        connect = self.connect
        read = self.read
        redirect = self.redirect
        status_count = self.status
        other = self.other
        cause = "unknown"
        status = None
        redirect_location = None
    
        if error and self._is_connection_error(error):
            # Connect retry?
            if connect is False:
                raise six.reraise(type(error), error, _stacktrace)
            elif connect is not None:
                connect -= 1
    
        elif error and self._is_read_error(error):
            # Read retry?
            if read is False or not self._is_method_retryable(method):
                raise six.reraise(type(error), error, _stacktrace)
            elif read is not None:
                read -= 1
    
        elif error:
            # Other retry?
            if other is not None:
                other -= 1
    
        elif response and response.get_redirect_location():
            # Redirect retry?
            if redirect is not None:
                redirect -= 1
            cause = "too many redirects"
            redirect_location = response.get_redirect_location()
            status = response.status
    
        else:
            # Incrementing because of a server error like a 500 in
            # status_forcelist and the given method is in the allowed_methods
            cause = ResponseError.GENERIC_ERROR
            if response and response.status:
                if status_count is not None:
                    status_count -= 1
                cause = ResponseError.SPECIFIC_ERROR.format(status_code=response.status)
                status = response.status
    
        history = self.history + (
            RequestHistory(method, url, error, status, redirect_location),
        )
    
        new_retry = self.new(
            total=total,
            connect=connect,
            read=read,
            redirect=redirect,
            status=status_count,
            other=other,
            history=history,
        )
    
        if new_retry.is_exhausted():
>           raise MaxRetryError(_pool, url, error or ResponseError(cause))
E           urllib3.exceptions.MaxRetryError: HTTPSConnectionPool(host='gen3.abi-ctt-ctp.cloud.edu.au', port=443): Max retries exceeded with url: /user/credentials/cdis/access_token (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7f82291fe880>: Failed to establish a new connection: [Errno 111] Connection refused'))

../../shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/util/retry.py:592: MaxRetryError

During handling of the above exception, another exception occurred:

client = <starlette.testclient.TestClient object at 0x7f8228f58af0>

    def test_get_gen3_record(client):
        UUID = "fcf89c10-20ae-43a9-afb4-a7b107a2b541"
    
        pass_case = {
            "program": "demo1",
            "project": "12L",
        }
>       response = client.post(f"/record/{UUID}", json=pass_case)

tests/test_api.py:103: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
../../shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/sessions.py:635: in post
    return self.request("POST", url, data=data, json=json, **kwargs)
../../shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages/starlette/testclient.py:476: in request
    return super().request(
../../shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/sessions.py:587: in request
    resp = self.send(prep, **send_kwargs)
../../shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/sessions.py:701: in send
    r = adapter.send(request, **kwargs)
../../shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages/starlette/testclient.py:270: in send
    raise exc
../../shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages/starlette/testclient.py:267: in send
    portal.call(self.app, scope, receive, send)
../../shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages/anyio/from_thread.py:283: in call
    return cast(T_Retval, self.start_task_soon(func, *args).result())
/usr/lib/python3.9/concurrent/futures/_base.py:446: in result
    return self.__get_result()
/usr/lib/python3.9/concurrent/futures/_base.py:391: in __get_result
    raise self._exception
../../shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages/anyio/from_thread.py:219: in _call_func
    retval = await retval
../../shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages/fastapi/applications.py:269: in __call__
    await super().__call__(scope, receive, send)
../../shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages/starlette/applications.py:124: in __call__
    await self.middleware_stack(scope, receive, send)
../../shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages/starlette/middleware/errors.py:184: in __call__
    raise exc
../../shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages/starlette/middleware/errors.py:162: in __call__
    await self.app(scope, receive, _send)
../../shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages/starlette/middleware/cors.py:84: in __call__
    await self.app(scope, receive, send)
../../shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages/starlette/exceptions.py:93: in __call__
    raise exc
../../shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages/starlette/exceptions.py:82: in __call__
    await self.app(scope, receive, sender)
../../shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages/fastapi/middleware/asyncexitstack.py:21: in __call__
    raise e
../../shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages/fastapi/middleware/asyncexitstack.py:18: in __call__
    await self.app(scope, receive, send)
../../shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages/starlette/routing.py:670: in __call__
    await route.handle(scope, receive, send)
../../shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages/starlette/routing.py:266: in handle
    await self.app(scope, receive, send)
../../shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages/starlette/routing.py:65: in app
    response = await func(request)
../../shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages/fastapi/routing.py:227: in app
    raw_response = await run_endpoint_function(
../../shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages/fastapi/routing.py:160: in run_endpoint_function
    return await dependant.call(**values)
app/main.py:261: in get_gen3_record
    record = SUBMISSION.export_record(
../../shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages/gen3/submission.py:348: in export_record
    output = requests.get(api_url, auth=self._auth_provider).text
../../shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/api.py:73: in get
    return request("get", url, params=params, **kwargs)
../../shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/api.py:59: in request
    return session.request(method=method, url=url, **kwargs)
../../shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/sessions.py:573: in request
    prep = self.prepare_request(req)
../../shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/sessions.py:484: in prepare_request
    p.prepare(
../../shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/models.py:372: in prepare
    self.prepare_auth(auth, url)
../../shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/models.py:603: in prepare_auth
    r = auth(self)
../../shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages/gen3/auth.py:266: in __call__
    request.headers["Authorization"] = self._get_auth_value()
../../shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages/gen3/auth.py:378: in _get_auth_value
    return "bearer " + self.get_access_token()
../../shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages/gen3/auth.py:367: in get_access_token
    return self.refresh_access_token(endpoint)
../../shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages/gen3/auth.py:304: in refresh_access_token
    self._access_token = get_access_token_with_key(self._refresh_token)
../../shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages/gen3/auth.py:75: in get_access_token_with_key
    resp = requests.post(auth_url, json=api_key)
../../shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/api.py:115: in post
    return request("post", url, data=data, json=json, **kwargs)
../../shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/api.py:59: in request
    return session.request(method=method, url=url, **kwargs)
../../shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/sessions.py:587: in request
    resp = self.send(prep, **send_kwargs)
../../shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/sessions.py:701: in send
    r = adapter.send(request, **kwargs)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <requests.adapters.HTTPAdapter object at 0x7f8229a490a0>
request = <PreparedRequest [POST]>, stream = False
timeout = Timeout(connect=None, read=None, total=None), verify = True
cert = None, proxies = OrderedDict()

    def send(
        self, request, stream=False, timeout=None, verify=True, cert=None, proxies=None
    ):
        """Sends PreparedRequest object. Returns Response object.
    
        :param request: The :class:`PreparedRequest <PreparedRequest>` being sent.
        :param stream: (optional) Whether to stream the request content.
        :param timeout: (optional) How long to wait for the server to send
            data before giving up, as a float, or a :ref:`(connect timeout,
            read timeout) <timeouts>` tuple.
        :type timeout: float or tuple or urllib3 Timeout object
        :param verify: (optional) Either a boolean, in which case it controls whether
            we verify the server's TLS certificate, or a string, in which case it
            must be a path to a CA bundle to use
        :param cert: (optional) Any user-provided SSL certificate to be trusted.
        :param proxies: (optional) The proxies dictionary to apply to the request.
        :rtype: requests.Response
        """
    
        try:
            conn = self.get_connection(request.url, proxies)
        except LocationValueError as e:
            raise InvalidURL(e, request=request)
    
        self.cert_verify(conn, request.url, verify, cert)
        url = self.request_url(request, proxies)
        self.add_headers(
            request,
            stream=stream,
            timeout=timeout,
            verify=verify,
            cert=cert,
            proxies=proxies,
        )
    
        chunked = not (request.body is None or "Content-Length" in request.headers)
    
        if isinstance(timeout, tuple):
            try:
                connect, read = timeout
                timeout = TimeoutSauce(connect=connect, read=read)
            except ValueError:
                raise ValueError(
                    f"Invalid timeout {timeout}. Pass a (connect, read) timeout tuple, "
                    f"or a single float to set both timeouts to the same value."
                )
        elif isinstance(timeout, TimeoutSauce):
            pass
        else:
            timeout = TimeoutSauce(connect=timeout, read=timeout)
    
        try:
            if not chunked:
                resp = conn.urlopen(
                    method=request.method,
                    url=url,
                    body=request.body,
                    headers=request.headers,
                    redirect=False,
                    assert_same_host=False,
                    preload_content=False,
                    decode_content=False,
                    retries=self.max_retries,
                    timeout=timeout,
                )
    
            # Send the request.
            else:
                if hasattr(conn, "proxy_pool"):
                    conn = conn.proxy_pool
    
                low_conn = conn._get_conn(timeout=DEFAULT_POOL_TIMEOUT)
    
                try:
                    skip_host = "Host" in request.headers
                    low_conn.putrequest(
                        request.method,
                        url,
                        skip_accept_encoding=True,
                        skip_host=skip_host,
                    )
    
                    for header, value in request.headers.items():
                        low_conn.putheader(header, value)
    
                    low_conn.endheaders()
    
                    for i in request.body:
                        low_conn.send(hex(len(i))[2:].encode("utf-8"))
                        low_conn.send(b"\r\n")
                        low_conn.send(i)
                        low_conn.send(b"\r\n")
                    low_conn.send(b"0\r\n\r\n")
    
                    # Receive the response from the server
                    r = low_conn.getresponse()
    
                    resp = HTTPResponse.from_httplib(
                        r,
                        pool=conn,
                        connection=low_conn,
                        preload_content=False,
                        decode_content=False,
                    )
                except Exception:
                    # If we hit any problems here, clean up the connection.
                    # Then, raise so that we can handle the actual exception.
                    low_conn.close()
                    raise
    
        except (ProtocolError, OSError) as err:
            raise ConnectionError(err, request=request)
    
        except MaxRetryError as e:
            if isinstance(e.reason, ConnectTimeoutError):
                # TODO: Remove this in 3.0.0: see #2811
                if not isinstance(e.reason, NewConnectionError):
                    raise ConnectTimeout(e, request=request)
    
            if isinstance(e.reason, ResponseError):
                raise RetryError(e, request=request)
    
            if isinstance(e.reason, _ProxyError):
                raise ProxyError(e, request=request)
    
            if isinstance(e.reason, _SSLError):
                # This branch is for urllib3 v1.22 and later.
                raise SSLError(e, request=request)
    
>           raise ConnectionError(e, request=request)
E           requests.exceptions.ConnectionError: HTTPSConnectionPool(host='gen3.abi-ctt-ctp.cloud.edu.au', port=443): Max retries exceeded with url: /user/credentials/cdis/access_token (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7f82291fe880>: Failed to establish a new connection: [Errno 111] Connection refused'))

../../shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/adapters.py:565: ConnectionError
______________________________ test_graphql_query ______________________________

client = <starlette.testclient.TestClient object at 0x7f822982eaf0>

    def test_graphql_query(client):
        DATASET_ID = "dataset-46-version-2-dataset_description"
        pass_case = {
            "node": "dataset_description",
            "filter": {
                "submitter_id": [DATASET_ID]
            },
            "search": ""
        }
        response = client.post("/graphql/query", json=pass_case)
        result = response.json()
>       assert response.status_code == 200
E       assert 404 == 200
E        +  where 404 = <Response [404]>.status_code

tests/test_api.py:145: AssertionError
___________________________ test_graphql_pagination ____________________________

client = <starlette.testclient.TestClient object at 0x7f8228fcc610>

    def test_graphql_pagination(client):
        filter_pass_case = {
            "node": "experiment",
            "filter": {
                "1": {
                    "node": "manifest_filter",
                    "filter": {
                        "additional_types": [
                            "text/vnd.abi.plot+tab-separated-values",
                            "text/vnd.abi.plot+csv"
                        ]
                    }
                },
                "2": {
                    "node": "case_filter",
                    "filter": {
                            "species": [
                                "Rattus norvegicus"
                            ]
                    }
                },
                "3": {
                    "node": "dataset_description_filter",
                    "filter": {
                            "study_organ_system": [
                                "stomach"
                            ]
                    }
                },
                "4": {
                    "node": "case_filter",
                    "filter": {
                            "sex": [
                                "Male"
                            ]
                    }
                }
            },
            "relation": "and"
        }
        response = client.post("/graphql/pagination/", json=filter_pass_case)
        result = response.json()
>       assert response.status_code == 200
E       assert 404 == 200
E        +  where 404 = <Response [404]>.status_code

tests/test_api.py:197: AssertionError
_______________________ test_download_gen3_metadata_file _______________________

client = <starlette.testclient.TestClient object at 0x7f8228e46f70>

    def test_download_gen3_metadata_file(client):
        PROG_NAME = "demo1"
        PROJ_NAME = "12L"
        UUID = "fcf89c10-20ae-43a9-afb4-a7b107a2b541"
        FORM = "json"
        response = client.get(
            f"/metadata/download/{PROG_NAME}/{PROJ_NAME}/{UUID}/{FORM}")
        result = response.json()
>       assert response.status_code == 200
E       assert 400 == 200
E        +  where 400 = <Response [400]>.status_code

tests/test_api.py:309: AssertionError
___________________________ test_get_irods_data_file ___________________________

client = <starlette.testclient.TestClient object at 0x7f8228f76c40>

    def test_get_irods_data_file(client):
        ACTION = "preview"
        FILEPATH = "dataset-217-version-2/derivative/scaffold_context_info.json"
        response = client.get(f"/data/{ACTION}/{FILEPATH}")
        result = response.json()
>       assert response.status_code == 200
E       assert 404 == 200
E        +  where 404 = <Response [404]>.status_code

tests/test_api.py:350: AssertionError
=============================== warnings summary ===============================
app/sgqlc.py:23
  /home/cmiss/Jenkins/workspace/12-Labours-API/app/sgqlc.py:23: DeprecationWarning: invalid escape sequence \{
    '\'([_a-z]+)\'', r'\1', re.sub('\{([^{].*[^}])\}', r'\1', f'{item.filter}'))

app/search.py:37
app/search.py:37
  /home/cmiss/Jenkins/workspace/12-Labours-API/app/search.py:37: DeprecationWarning: invalid escape sequence \s
    f'(\s{keyword}|{keyword}\s)', result[DataObjectMeta.value])

-- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
=========================== short test summary info ============================
FAILED tests/test_api.py::test_get_gen3_program - assert 404 == 200
FAILED tests/test_api.py::test_get_gen3_project - assert 404 == 200
FAILED tests/test_api.py::test_get_gen3_dictionary - assert 404 == 200
FAILED tests/test_api.py::test_get_gen3_node_records - requests.exceptions.Co...
FAILED tests/test_api.py::test_get_gen3_record - requests.exceptions.Connecti...
FAILED tests/test_api.py::test_graphql_query - assert 404 == 200
FAILED tests/test_api.py::test_graphql_pagination - assert 404 == 200
FAILED tests/test_api.py::test_download_gen3_metadata_file - assert 400 == 200
FAILED tests/test_api.py::test_get_irods_data_file - assert 404 == 200
=================== 9 failed, 3 passed, 3 warnings in 3.42s ====================
Build step 'Virtualenv Builder' marked build as failure
[Slack Notifications] found #39 as previous completed, non-aborted build
[Slack Notifications] will send OnEveryFailureNotification because build matches and user preferences allow it
Finished: FAILURE