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Started by timer Running as SYSTEM Building remotely on Ubuntu_18.04_bioeng49 (buildslave Testing) in workspace /home/cmiss/Jenkins/workspace/12-Labours-API [WS-CLEANUP] Deleting project workspace... [WS-CLEANUP] Deferred wipeout is used... [WS-CLEANUP] Done The recommended git tool is: NONE No credentials specified Cloning the remote Git repository Cloning repository https://github.com/ABI-Software/12-labours-api.git > git init /home/cmiss/Jenkins/workspace/12-Labours-API # timeout=10 Fetching upstream changes from https://github.com/ABI-Software/12-labours-api.git > git --version # timeout=10 > git --version # 'git version 2.25.1' > git fetch --tags --force --progress -- https://github.com/ABI-Software/12-labours-api.git +refs/heads/*:refs/remotes/origin/* # timeout=10 > git config remote.origin.url https://github.com/ABI-Software/12-labours-api.git # timeout=10 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10 Avoid second fetch > git rev-parse refs/remotes/origin/dev^{commit} # timeout=10 Checking out Revision fed7495860d0492a0d83f51077693f3de98e748d (refs/remotes/origin/dev) > git config core.sparsecheckout # timeout=10 > git checkout -f fed7495860d0492a0d83f51077693f3de98e748d # timeout=10 Commit message: "Merge pull request #43 from ddjnw1yu/access-control" > git rev-list --no-walk fed7495860d0492a0d83f51077693f3de98e748d # timeout=10 [12-Labours-API] $ /bin/sh -xe /tmp/shiningpanda16214521556757020189.sh + pwd + export PYTHONPATH=/home/cmiss/Jenkins/workspace/12-Labours-API + pip install -r requirements.txt Requirement already satisfied: fastapi==0.80.0 in /home/cmiss/Jenkins/shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 1)) (0.80.0) Requirement already satisfied: fastapi-utils==0.2.1 in /home/cmiss/Jenkins/shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 2)) (0.2.1) Requirement already satisfied: gen3==4.19.1 in /home/cmiss/Jenkins/shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 3)) (4.19.1) Requirement already satisfied: gunicorn==20.1.0 in /home/cmiss/Jenkins/shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 4)) (20.1.0) Requirement already satisfied: PyJWT==2.7.0 in /home/cmiss/Jenkins/shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 5)) (2.7.0) Requirement already satisfied: pyorthanc==1.11.5 in /home/cmiss/Jenkins/shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 6)) (1.11.5) Requirement already satisfied: python-dotenv==0.20.0 in /home/cmiss/Jenkins/shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 7)) (0.20.0) Requirement already satisfied: python-irodsclient==1.1.8 in /home/cmiss/Jenkins/shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 8)) (1.1.8) Requirement already satisfied: sgqlc==16.3 in /home/cmiss/Jenkins/shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 9)) (16.3) Requirement already satisfied: uvicorn==0.18.2 in /home/cmiss/Jenkins/shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 10)) (0.18.2) Requirement already satisfied: starlette==0.19.1 in /home/cmiss/Jenkins/shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from fastapi==0.80.0->-r requirements.txt (line 1)) (0.19.1) Requirement already satisfied: pydantic!=1.7,!=1.7.1,!=1.7.2,!=1.7.3,!=1.8,!=1.8.1,<2.0.0,>=1.6.2 in /home/cmiss/Jenkins/shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from fastapi==0.80.0->-r requirements.txt (line 1)) (1.10.12) Requirement already satisfied: sqlalchemy<2.0.0,>=1.3.12 in /home/cmiss/Jenkins/shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from fastapi-utils==0.2.1->-r requirements.txt (line 2)) (1.4.49) Requirement already satisfied: aiofiles<0.9.0,>=0.8.0 in /home/cmiss/Jenkins/shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from gen3==4.19.1->-r requirements.txt (line 3)) (0.8.0) Requirement already satisfied: aiohttp in /home/cmiss/Jenkins/shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from gen3==4.19.1->-r requirements.txt (line 3)) (3.8.5) Requirement already satisfied: backoff in /home/cmiss/Jenkins/shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from gen3==4.19.1->-r requirements.txt (line 3)) (1.11.1) Requirement already satisfied: cdislogging<2.0.0,>=1.1.0 in /home/cmiss/Jenkins/shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from gen3==4.19.1->-r requirements.txt (line 3)) (1.1.1) Requirement already satisfied: click in /home/cmiss/Jenkins/shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from gen3==4.19.1->-r requirements.txt (line 3)) (7.1.2) Requirement already satisfied: dataclasses-json in /home/cmiss/Jenkins/shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from gen3==4.19.1->-r requirements.txt (line 3)) (0.6.0) Requirement already satisfied: drsclient<0.3.0,>=0.2.2 in /home/cmiss/Jenkins/shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from gen3==4.19.1->-r requirements.txt (line 3)) (0.2.3) Requirement already satisfied: httpx in /home/cmiss/Jenkins/shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from gen3==4.19.1->-r requirements.txt (line 3)) (0.23.3) Requirement already satisfied: humanfriendly in /home/cmiss/Jenkins/shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from gen3==4.19.1->-r requirements.txt (line 3)) (10.0) Requirement already satisfied: indexclient in /home/cmiss/Jenkins/shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from gen3==4.19.1->-r requirements.txt (line 3)) (2.2.1) Requirement already satisfied: jsonschema in /home/cmiss/Jenkins/shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from gen3==4.19.1->-r requirements.txt (line 3)) (3.2.0) Requirement already satisfied: pandas<2.0.0,>=1.4.2 in /home/cmiss/Jenkins/shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from gen3==4.19.1->-r requirements.txt (line 3)) (1.5.3) Requirement already satisfied: pypfb<1.0.0 in /home/cmiss/Jenkins/shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from gen3==4.19.1->-r requirements.txt (line 3)) (0.5.26) Requirement already satisfied: python-dateutil in /home/cmiss/Jenkins/shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from gen3==4.19.1->-r requirements.txt (line 3)) (2.8.2) Requirement already satisfied: requests in /home/cmiss/Jenkins/shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from gen3==4.19.1->-r requirements.txt (line 3)) (2.31.0) Requirement already satisfied: tqdm<5.0.0,>=4.61.2 in /home/cmiss/Jenkins/shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from gen3==4.19.1->-r requirements.txt (line 3)) (4.66.1) Requirement already satisfied: urllib3<2.0.0 in /home/cmiss/Jenkins/shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from gen3==4.19.1->-r requirements.txt (line 3)) (1.26.16) Requirement already satisfied: xmltodict<0.14.0,>=0.13.0 in /home/cmiss/Jenkins/shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from gen3==4.19.1->-r requirements.txt (line 3)) (0.13.0) Requirement already satisfied: setuptools>=3.0 in /home/cmiss/Jenkins/shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from gunicorn==20.1.0->-r requirements.txt (line 4)) (68.1.2) Requirement already satisfied: pydicom<3.0.0,>=2.3.0 in /home/cmiss/Jenkins/shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from pyorthanc==1.11.5->-r requirements.txt (line 6)) (2.4.3) Requirement already satisfied: PrettyTable>=0.7.2 in /home/cmiss/Jenkins/shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from python-irodsclient==1.1.8->-r requirements.txt (line 8)) (3.8.0) Requirement already satisfied: defusedxml in /home/cmiss/Jenkins/shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from python-irodsclient==1.1.8->-r requirements.txt (line 8)) (0.7.1) Requirement already satisfied: six>=1.10.0 in /home/cmiss/Jenkins/shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from python-irodsclient==1.1.8->-r requirements.txt (line 8)) (1.16.0) Requirement already satisfied: graphql-core<4.0.0,>=3.1.7 in /home/cmiss/Jenkins/shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from sgqlc==16.3->-r requirements.txt (line 9)) (3.2.3) Requirement already satisfied: h11>=0.8 in /home/cmiss/Jenkins/shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from uvicorn==0.18.2->-r requirements.txt (line 10)) (0.14.0) Requirement already satisfied: anyio<5,>=3.4.0 in /home/cmiss/Jenkins/shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from starlette==0.19.1->fastapi==0.80.0->-r requirements.txt (line 1)) (3.6.2) Requirement already satisfied: typing-extensions>=3.10.0 in /home/cmiss/Jenkins/shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from starlette==0.19.1->fastapi==0.80.0->-r requirements.txt (line 1)) (4.7.1) Requirement already satisfied: asyncio<4.0.0,>=3.4.3 in /home/cmiss/Jenkins/shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from drsclient<0.3.0,>=0.2.2->gen3==4.19.1->-r requirements.txt (line 3)) (3.4.3) Requirement already satisfied: certifi in /home/cmiss/Jenkins/shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from httpx->gen3==4.19.1->-r requirements.txt (line 3)) (2023.7.22) Requirement already satisfied: httpcore<0.17.0,>=0.15.0 in /home/cmiss/Jenkins/shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from httpx->gen3==4.19.1->-r requirements.txt (line 3)) (0.16.3) Requirement already satisfied: rfc3986[idna2008]<2,>=1.3 in /home/cmiss/Jenkins/shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from httpx->gen3==4.19.1->-r requirements.txt (line 3)) (1.5.0) Requirement already satisfied: sniffio in /home/cmiss/Jenkins/shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from httpx->gen3==4.19.1->-r requirements.txt (line 3)) (1.3.0) Requirement already satisfied: pytz>=2020.1 in /home/cmiss/Jenkins/shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from pandas<2.0.0,>=1.4.2->gen3==4.19.1->-r requirements.txt (line 3)) (2023.3.post1) Requirement already satisfied: numpy>=1.20.3 in /home/cmiss/Jenkins/shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from pandas<2.0.0,>=1.4.2->gen3==4.19.1->-r requirements.txt (line 3)) (1.25.2) Requirement already satisfied: wcwidth in /home/cmiss/Jenkins/shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from PrettyTable>=0.7.2->python-irodsclient==1.1.8->-r requirements.txt (line 8)) (0.2.6) Requirement already satisfied: PyYAML<6.0.0,>=5.3.1 in /home/cmiss/Jenkins/shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from pypfb<1.0.0->gen3==4.19.1->-r requirements.txt (line 3)) (5.4.1) Requirement already satisfied: dictionaryutils<4.0.0,>=3.4.3 in /home/cmiss/Jenkins/shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from pypfb<1.0.0->gen3==4.19.1->-r requirements.txt (line 3)) (3.4.6) Requirement already satisfied: fastavro<1.9.0,>=1.8.2 in /home/cmiss/Jenkins/shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from pypfb<1.0.0->gen3==4.19.1->-r requirements.txt (line 3)) (1.8.2) Requirement already satisfied: gdcdictionary<2.0.0,>=1.2.0 in /home/cmiss/Jenkins/shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from pypfb<1.0.0->gen3==4.19.1->-r requirements.txt (line 3)) (1.2.0) Requirement already satisfied: python-json-logger<0.2.0,>=0.1.11 in /home/cmiss/Jenkins/shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from pypfb<1.0.0->gen3==4.19.1->-r requirements.txt (line 3)) (0.1.11) Requirement already satisfied: attrs>=17.3.0 in /home/cmiss/Jenkins/shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from aiohttp->gen3==4.19.1->-r requirements.txt (line 3)) (23.1.0) Requirement already satisfied: charset-normalizer<4.0,>=2.0 in /home/cmiss/Jenkins/shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from aiohttp->gen3==4.19.1->-r requirements.txt (line 3)) (3.2.0) Requirement already satisfied: multidict<7.0,>=4.5 in /home/cmiss/Jenkins/shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from aiohttp->gen3==4.19.1->-r requirements.txt (line 3)) (6.0.4) Requirement already satisfied: async-timeout<5.0,>=4.0.0a3 in /home/cmiss/Jenkins/shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from aiohttp->gen3==4.19.1->-r requirements.txt (line 3)) (4.0.3) Requirement already satisfied: yarl<2.0,>=1.0 in /home/cmiss/Jenkins/shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from aiohttp->gen3==4.19.1->-r requirements.txt (line 3)) (1.9.2) Requirement already satisfied: frozenlist>=1.1.1 in /home/cmiss/Jenkins/shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from aiohttp->gen3==4.19.1->-r requirements.txt (line 3)) (1.4.0) Requirement already satisfied: aiosignal>=1.1.2 in /home/cmiss/Jenkins/shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from aiohttp->gen3==4.19.1->-r requirements.txt (line 3)) (1.3.1) Requirement already satisfied: idna<4,>=2.5 in /home/cmiss/Jenkins/shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from requests->gen3==4.19.1->-r requirements.txt (line 3)) (3.4) Requirement already satisfied: greenlet!=0.4.17 in /home/cmiss/Jenkins/shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from sqlalchemy<2.0.0,>=1.3.12->fastapi-utils==0.2.1->-r requirements.txt (line 2)) (2.0.2) Requirement already satisfied: marshmallow<4.0.0,>=3.18.0 in /home/cmiss/Jenkins/shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from dataclasses-json->gen3==4.19.1->-r requirements.txt (line 3)) (3.20.1) Requirement already satisfied: typing-inspect<1,>=0.4.0 in /home/cmiss/Jenkins/shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from dataclasses-json->gen3==4.19.1->-r requirements.txt (line 3)) (0.9.0) Requirement already satisfied: pyrsistent>=0.14.0 in /home/cmiss/Jenkins/shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from jsonschema->gen3==4.19.1->-r requirements.txt (line 3)) (0.19.3) Requirement already satisfied: packaging>=17.0 in /home/cmiss/Jenkins/shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from marshmallow<4.0.0,>=3.18.0->dataclasses-json->gen3==4.19.1->-r requirements.txt (line 3)) (23.1) Requirement already satisfied: mypy-extensions>=0.3.0 in /home/cmiss/Jenkins/shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from typing-inspect<1,>=0.4.0->dataclasses-json->gen3==4.19.1->-r requirements.txt (line 3)) (1.0.0) [notice] A new release of pip is available: 23.2.1 -> 24.0 [notice] To update, run: pip install --upgrade pip + pip install -r requirements-dev.txt Requirement already satisfied: pytest==7.1.2 in /home/cmiss/Jenkins/shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements-dev.txt (line 1)) (7.1.2) Requirement already satisfied: pytest-timeout==2.1.0 in /home/cmiss/Jenkins/shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements-dev.txt (line 2)) (2.1.0) Requirement already satisfied: anyio==3.6.2 in /home/cmiss/Jenkins/shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements-dev.txt (line 3)) (3.6.2) Requirement already satisfied: attrs>=19.2.0 in /home/cmiss/Jenkins/shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from pytest==7.1.2->-r requirements-dev.txt (line 1)) (23.1.0) Requirement already satisfied: iniconfig in /home/cmiss/Jenkins/shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from pytest==7.1.2->-r requirements-dev.txt (line 1)) (2.0.0) Requirement already satisfied: packaging in /home/cmiss/Jenkins/shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from pytest==7.1.2->-r requirements-dev.txt (line 1)) (23.1) Requirement already satisfied: pluggy<2.0,>=0.12 in /home/cmiss/Jenkins/shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from pytest==7.1.2->-r requirements-dev.txt (line 1)) (1.3.0) Requirement already satisfied: py>=1.8.2 in /home/cmiss/Jenkins/shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from pytest==7.1.2->-r requirements-dev.txt (line 1)) (1.11.0) Requirement already satisfied: tomli>=1.0.0 in /home/cmiss/Jenkins/shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from pytest==7.1.2->-r requirements-dev.txt (line 1)) (2.0.1) Requirement already satisfied: idna>=2.8 in /home/cmiss/Jenkins/shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from anyio==3.6.2->-r requirements-dev.txt (line 3)) (3.4) Requirement already satisfied: sniffio>=1.1 in /home/cmiss/Jenkins/shiningpanda/jobs/084398e7/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from anyio==3.6.2->-r requirements-dev.txt (line 3)) (1.3.0) [notice] A new release of pip is available: 23.2.1 -> 24.0 [notice] To update, run: pip install --upgrade pip + pytest ============================= test session starts ============================== platform linux -- Python 3.9.18, pytest-7.1.2, pluggy-1.3.0 rootdir: /home/cmiss/Jenkins/workspace/12-Labours-API plugins: anyio-3.6.2, timeout-2.1.0 collected 39 items tests/test_api/test_access_api.py FFF [ 7%] tests/test_api/test_gen3_api.py FFFF [ 17%] tests/test_api/test_irods_api.py FE [ 23%] tests/test_api/test_orthanc_api.py .. [ 28%] tests/test_data/test_gen3_data.py FFFF [ 38%] tests/test_data/test_irods_data.py F [ 41%] tests/test_function/test_filter/test_filter_editor.py .. [ 46%] tests/test_function/test_filter/test_filter_formatter.py .... [ 56%] tests/test_function/test_filter/test_filter_generator.py ... [ 64%] tests/test_function/test_filter/test_filter_logic.py ... [ 71%] tests/test_function/test_pagination/test_pagination_formatter.py . [ 74%] tests/test_function/test_query/test_query_formatter.py ...... [ 89%] tests/test_function/test_search/test_search_logic.py .... [100%] ==================================== ERRORS ==================================== __________________ ERROR at setup of test_get_irods_data_file __________________ client = <starlette.testclient.TestClient object at 0x7f19491a83d0> token = {'detail': 'Please check the service (Gen3/iRODS) status'} @pytest.fixture def one_off_token(client, token): response = client.get( "/access/oneoff", > headers={"Authorization": f"Bearer {token['access_token']}"}, ) E KeyError: 'access_token' tests/test_api/test_irods_api.py:28: KeyError ------------------------------ Captured log setup ------------------------------ WARNING services.gen3.gen3_service:gen3_service.py:94 Gen3 disconnected. ERROR services.gen3.gen3_service:gen3_service.py:98 Hit the max retry limit. Unable to reconnect. ERROR services.gen3.gen3_service:gen3_service.py:99 Failed to get an access token from https://gen3.abi-ctt-ctp.cloud.edu.au/user/credentials/cdis/access_token: Internal Server Error INFO app.main:main.py:166 {'gen3': False, 'irods': True, 'orthanc': True} WARNING app.main:main.py:185 Failed to update default filter. WARNING services.gen3.gen3_service:gen3_service.py:94 Gen3 disconnected. ERROR services.gen3.gen3_service:gen3_service.py:98 Hit the max retry limit. Unable to reconnect. ERROR services.gen3.gen3_service:gen3_service.py:99 Failed to get an access token from https://gen3.abi-ctt-ctp.cloud.edu.au/user/credentials/cdis/access_token: Internal Server Error =================================== FAILURES =================================== ______________________________ test_create_access ______________________________ client = <starlette.testclient.TestClient object at 0x7f1949307730> def test_create_access(client): missing_data = {} response = client.post("/access/token", json=missing_data) result = response.json() > assert response.status_code == 400 E assert 500 == 400 E + where 500 = <Response [500]>.status_code tests/test_api/test_access_api.py:28: AssertionError ------------------------------ Captured log setup ------------------------------ WARNING services.gen3.gen3_service:gen3_service.py:94 Gen3 disconnected. WARNING services.gen3.gen3_service:gen3_service.py:102 Reconnecting...1... WARNING services.gen3.gen3_service:gen3_service.py:94 Gen3 disconnected. WARNING services.gen3.gen3_service:gen3_service.py:102 Reconnecting...2... WARNING services.gen3.gen3_service:gen3_service.py:94 Gen3 disconnected. WARNING services.gen3.gen3_service:gen3_service.py:102 Reconnecting...3... WARNING services.gen3.gen3_service:gen3_service.py:94 Gen3 disconnected. WARNING services.gen3.gen3_service:gen3_service.py:102 Reconnecting...4... WARNING services.gen3.gen3_service:gen3_service.py:94 Gen3 disconnected. WARNING services.gen3.gen3_service:gen3_service.py:102 Reconnecting...5... WARNING services.gen3.gen3_service:gen3_service.py:94 Gen3 disconnected. WARNING services.gen3.gen3_service:gen3_service.py:102 Reconnecting...6... WARNING services.gen3.gen3_service:gen3_service.py:94 Gen3 disconnected. WARNING services.gen3.gen3_service:gen3_service.py:102 Reconnecting...7... WARNING services.gen3.gen3_service:gen3_service.py:94 Gen3 disconnected. WARNING services.gen3.gen3_service:gen3_service.py:102 Reconnecting...8... WARNING services.gen3.gen3_service:gen3_service.py:94 Gen3 disconnected. WARNING services.gen3.gen3_service:gen3_service.py:102 Reconnecting...9... WARNING services.gen3.gen3_service:gen3_service.py:94 Gen3 disconnected. WARNING services.gen3.gen3_service:gen3_service.py:102 Reconnecting...10... WARNING services.gen3.gen3_service:gen3_service.py:94 Gen3 disconnected. WARNING services.gen3.gen3_service:gen3_service.py:102 Reconnecting...11... WARNING services.gen3.gen3_service:gen3_service.py:94 Gen3 disconnected. WARNING services.gen3.gen3_service:gen3_service.py:102 Reconnecting...12... WARNING services.gen3.gen3_service:gen3_service.py:94 Gen3 disconnected. ERROR services.gen3.gen3_service:gen3_service.py:98 Hit the max retry limit. Unable to reconnect. ERROR services.gen3.gen3_service:gen3_service.py:99 Failed to get an access token from https://gen3.abi-ctt-ctp.cloud.edu.au/user/credentials/cdis/access_token: <!doctype html> <html lang="en"> <head> <meta charset="utf-8"> <title>401</title> <link rel="stylesheet" href="/api/static/css/bootstrap.min.css"> <link href='https://fonts.googleapis.com/css?family=Source+Sans+Pro' rel='stylesheet' type='text/css'> <script src="https://ajax.googleapis.com/ajax/libs/jquery/1.11.3/jquery.min.js"></script> <script src="/api/static/js/bootstrap.min.js"></script> </head> <body> <main> <img class="error-page__logo" src="/user/static/img/logo.svg" /> <div class="error-page"> <div class="error-page__banner"> <h1>Gen3 Data Commons</h1> </div> <div class="error-page__status-code"> <div class="error-page__status-code-text"> <h1>401</h1> <h2>Unauthorized</h2> </div> <img class="error-page__picture" src="/user/static/img/404.svg" /> </div> <div class="error-page__information"> <p class="body">Error Identifier:</p> <p class="introduction">56104681-bf2d-4ece-b5c7-e7a5daa53f6b</p> <p class="body">Error Message:</p> <p class="introduction">[401] - Authentication Error: Signature has expired</p> <div> <p class="body">Please try again!</p> </div> </div> </div> </main> </body> <style type="text/css"> .body { font-size: 16px; color: #9b9b9b; margin: 0; } .introduction { font-size: 18px; font-weight: 500; line-height: 18px; letter-spacing: .03rem; color: #000000; display: inline-block; margin: 13px 0 13px 0; } .auth-data-logo { width: 314px; height: 116px; display: block; margin: auto; margin-bottom: 15px; } body { margin: 30px 30px; background-color: #F5F5F5; font-family: 'Source Sans Pro', sans-serif; } .error-page { width: 100%; display: flex; flex-flow: column; justify-content: center; background-color: white; border: 1px solid #9b9b9b; border-radius: 8px; } .error-page__logo { width: 100%; display: flex; margin-bottom: 15px; max-height: 116px; justify-content: center; } .error-page__banner { min-height: 70px; background-color: #3283C8; text-align: center; color: white; border-radius: 8px 8px 0 0; font-weight: lighter; } .error-page__status-code { display: flex; justify-content: center; align-items: center; margin: 60px 0 25px 0; text-align: center; background-color: white; } .error-page__status-code-text { display: flex; flex-flow: column; margin-right: 20px; } .error-page__status-code-text h1 { font-size: 155px; font-weight: lighter; margin: 0; line-height: 1em; } .error-page__status-code-text h2 { margin: 0; } .error-page__picture { height: 186px; margin-left: 20px; } .error-page__information { margin: 0 30px 60px 30px; border: 1px solid #9b9b9b; border-radius: 4px; background-color: #f5f5f5; padding: 20px 20px; } .error-page__information a { color: #3283C8; text-decoration: none; } </style> </html> INFO app.main:main.py:166 {'gen3': False, 'irods': True, 'orthanc': True} WARNING app.main:main.py:185 Failed to update default filter. ------------------------------ Captured log call ------------------------------- WARNING services.gen3.gen3_service:gen3_service.py:94 Gen3 disconnected. ERROR services.gen3.gen3_service:gen3_service.py:98 Hit the max retry limit. Unable to reconnect. ERROR services.gen3.gen3_service:gen3_service.py:99 Failed to get an access token from https://gen3.abi-ctt-ctp.cloud.edu.au/user/credentials/cdis/access_token: <!doctype html> <html lang="en"> <head> <meta charset="utf-8"> <title>401</title> <link rel="stylesheet" href="/api/static/css/bootstrap.min.css"> <link href='https://fonts.googleapis.com/css?family=Source+Sans+Pro' rel='stylesheet' type='text/css'> <script src="https://ajax.googleapis.com/ajax/libs/jquery/1.11.3/jquery.min.js"></script> <script src="/api/static/js/bootstrap.min.js"></script> </head> <body> <main> <img class="error-page__logo" src="/user/static/img/logo.svg" /> <div class="error-page"> <div class="error-page__banner"> <h1>Gen3 Data Commons</h1> </div> <div class="error-page__status-code"> <div class="error-page__status-code-text"> <h1>401</h1> <h2>Unauthorized</h2> </div> <img class="error-page__picture" src="/user/static/img/404.svg" /> </div> <div class="error-page__information"> <p class="body">Error Identifier:</p> <p class="introduction">3177bf24-131a-4e80-895b-f7711a347c80</p> <p class="body">Error Message:</p> <p class="introduction">[401] - Authentication Error: Signature has expired</p> <div> <p class="body">Please try again!</p> </div> </div> </div> </main> </body> <style type="text/css"> .body { font-size: 16px; color: #9b9b9b; margin: 0; } .introduction { font-size: 18px; font-weight: 500; line-height: 18px; letter-spacing: .03rem; color: #000000; display: inline-block; margin: 13px 0 13px 0; } .auth-data-logo { width: 314px; height: 116px; display: block; margin: auto; margin-bottom: 15px; } body { margin: 30px 30px; background-color: #F5F5F5; font-family: 'Source Sans Pro', sans-serif; } .error-page { width: 100%; display: flex; flex-flow: column; justify-content: center; background-color: white; border: 1px solid #9b9b9b; border-radius: 8px; } .error-page__logo { width: 100%; display: flex; margin-bottom: 15px; max-height: 116px; justify-content: center; } .error-page__banner { min-height: 70px; background-color: #3283C8; text-align: center; color: white; border-radius: 8px 8px 0 0; font-weight: lighter; } .error-page__status-code { display: flex; justify-content: center; align-items: center; margin: 60px 0 25px 0; text-align: center; background-color: white; } .error-page__status-code-text { display: flex; flex-flow: column; margin-right: 20px; } .error-page__status-code-text h1 { font-size: 155px; font-weight: lighter; margin: 0; line-height: 1em; } .error-page__status-code-text h2 { margin: 0; } .error-page__picture { height: 186px; margin-left: 20px; } .error-page__information { margin: 0 30px 60px 30px; border: 1px solid #9b9b9b; border-radius: 4px; background-color: #f5f5f5; padding: 20px 20px; } .error-page__information a { color: #3283C8; text-decoration: none; } </style> </html> __________________________ test_create_one_off_access __________________________ client = <starlette.testclient.TestClient object at 0x7f19491f31f0> token = {'detail': 'Please check the service (Gen3/iRODS) status'} def test_create_one_off_access(client, token): response = client.get( "/access/oneoff", > headers={"Authorization": f"Bearer {token['access_token']}"}, ) E KeyError: 'access_token' tests/test_api/test_access_api.py:45: KeyError ------------------------------ Captured log setup ------------------------------ WARNING services.gen3.gen3_service:gen3_service.py:94 Gen3 disconnected. ERROR services.gen3.gen3_service:gen3_service.py:98 Hit the max retry limit. Unable to reconnect. ERROR services.gen3.gen3_service:gen3_service.py:99 Failed to get an access token from https://gen3.abi-ctt-ctp.cloud.edu.au/user/credentials/cdis/access_token: <!doctype html> <html lang="en"> <head> <meta charset="utf-8"> <title>401</title> <link rel="stylesheet" href="/api/static/css/bootstrap.min.css"> <link href='https://fonts.googleapis.com/css?family=Source+Sans+Pro' rel='stylesheet' type='text/css'> <script src="https://ajax.googleapis.com/ajax/libs/jquery/1.11.3/jquery.min.js"></script> <script src="/api/static/js/bootstrap.min.js"></script> </head> <body> <main> <img class="error-page__logo" src="/user/static/img/logo.svg" /> <div class="error-page"> <div class="error-page__banner"> <h1>Gen3 Data Commons</h1> </div> <div class="error-page__status-code"> <div class="error-page__status-code-text"> <h1>401</h1> <h2>Unauthorized</h2> </div> <img class="error-page__picture" src="/user/static/img/404.svg" /> </div> <div class="error-page__information"> <p class="body">Error Identifier:</p> <p class="introduction">b087b02d-73d1-46ad-b449-a45f0decc637</p> <p class="body">Error Message:</p> <p class="introduction">[401] - Authentication Error: Signature has expired</p> <div> <p class="body">Please try again!</p> </div> </div> </div> </main> </body> <style type="text/css"> .body { font-size: 16px; color: #9b9b9b; margin: 0; } .introduction { font-size: 18px; font-weight: 500; line-height: 18px; letter-spacing: .03rem; color: #000000; display: inline-block; margin: 13px 0 13px 0; } .auth-data-logo { width: 314px; height: 116px; display: block; margin: auto; margin-bottom: 15px; } body { margin: 30px 30px; background-color: #F5F5F5; font-family: 'Source Sans Pro', sans-serif; } .error-page { width: 100%; display: flex; flex-flow: column; justify-content: center; background-color: white; border: 1px solid #9b9b9b; border-radius: 8px; } .error-page__logo { width: 100%; display: flex; margin-bottom: 15px; max-height: 116px; justify-content: center; } .error-page__banner { min-height: 70px; background-color: #3283C8; text-align: center; color: white; border-radius: 8px 8px 0 0; font-weight: lighter; } .error-page__status-code { display: flex; justify-content: center; align-items: center; margin: 60px 0 25px 0; text-align: center; background-color: white; } .error-page__status-code-text { display: flex; flex-flow: column; margin-right: 20px; } .error-page__status-code-text h1 { font-size: 155px; font-weight: lighter; margin: 0; line-height: 1em; } .error-page__status-code-text h2 { margin: 0; } .error-page__picture { height: 186px; margin-left: 20px; } .error-page__information { margin: 0 30px 60px 30px; border: 1px solid #9b9b9b; border-radius: 4px; background-color: #f5f5f5; padding: 20px 20px; } .error-page__information a { color: #3283C8; text-decoration: none; } </style> </html> INFO app.main:main.py:166 {'gen3': False, 'irods': True, 'orthanc': True} WARNING app.main:main.py:185 Failed to update default filter. WARNING services.gen3.gen3_service:gen3_service.py:94 Gen3 disconnected. ERROR services.gen3.gen3_service:gen3_service.py:98 Hit the max retry limit. Unable to reconnect. ERROR services.gen3.gen3_service:gen3_service.py:99 Failed to get an access token from https://gen3.abi-ctt-ctp.cloud.edu.au/user/credentials/cdis/access_token: <!doctype html> <html lang="en"> <head> <meta charset="utf-8"> <title>401</title> <link rel="stylesheet" href="/api/static/css/bootstrap.min.css"> <link href='https://fonts.googleapis.com/css?family=Source+Sans+Pro' rel='stylesheet' type='text/css'> <script src="https://ajax.googleapis.com/ajax/libs/jquery/1.11.3/jquery.min.js"></script> <script src="/api/static/js/bootstrap.min.js"></script> </head> <body> <main> <img class="error-page__logo" src="/user/static/img/logo.svg" /> <div class="error-page"> <div class="error-page__banner"> <h1>Gen3 Data Commons</h1> </div> <div class="error-page__status-code"> <div class="error-page__status-code-text"> <h1>401</h1> <h2>Unauthorized</h2> </div> <img class="error-page__picture" src="/user/static/img/404.svg" /> </div> <div class="error-page__information"> <p class="body">Error Identifier:</p> <p class="introduction">4b3a9d13-8103-4480-8c25-89a213e39ce7</p> <p class="body">Error Message:</p> <p class="introduction">[401] - Authentication Error: Signature has expired</p> <div> <p class="body">Please try again!</p> </div> </div> </div> </main> </body> <style type="text/css"> .body { font-size: 16px; color: #9b9b9b; margin: 0; } .introduction { font-size: 18px; font-weight: 500; line-height: 18px; letter-spacing: .03rem; color: #000000; display: inline-block; margin: 13px 0 13px 0; } .auth-data-logo { width: 314px; height: 116px; display: block; margin: auto; margin-bottom: 15px; } body { margin: 30px 30px; background-color: #F5F5F5; font-family: 'Source Sans Pro', sans-serif; } .error-page { width: 100%; display: flex; flex-flow: column; justify-content: center; background-color: white; border: 1px solid #9b9b9b; border-radius: 8px; } .error-page__logo { width: 100%; display: flex; margin-bottom: 15px; max-height: 116px; justify-content: center; } .error-page__banner { min-height: 70px; background-color: #3283C8; text-align: center; color: white; border-radius: 8px 8px 0 0; font-weight: lighter; } .error-page__status-code { display: flex; justify-content: center; align-items: center; margin: 60px 0 25px 0; text-align: center; background-color: white; } .error-page__status-code-text { display: flex; flex-flow: column; margin-right: 20px; } .error-page__status-code-text h1 { font-size: 155px; font-weight: lighter; margin: 0; line-height: 1em; } .error-page__status-code-text h2 { margin: 0; } .error-page__picture { height: 186px; margin-left: 20px; } .error-page__information { margin: 0 30px 60px 30px; border: 1px solid #9b9b9b; border-radius: 4px; background-color: #f5f5f5; padding: 20px 20px; } .error-page__information a { color: #3283C8; text-decoration: none; } </style> </html> ______________________________ test_revoke_access ______________________________ client = <starlette.testclient.TestClient object at 0x7f19488b6280> token = {'detail': 'Please check the service (Gen3/iRODS) status'} def test_revoke_access(client, token): response = client.delete( "/access/revoke", > headers={"Authorization": f"Bearer {token['access_token']}"}, ) E KeyError: 'access_token' tests/test_api/test_access_api.py:55: KeyError ------------------------------ Captured log setup ------------------------------ WARNING services.gen3.gen3_service:gen3_service.py:94 Gen3 disconnected. ERROR services.gen3.gen3_service:gen3_service.py:98 Hit the max retry limit. Unable to reconnect. ERROR services.gen3.gen3_service:gen3_service.py:99 Failed to get an access token from https://gen3.abi-ctt-ctp.cloud.edu.au/user/credentials/cdis/access_token: Internal Server Error INFO app.main:main.py:166 {'gen3': False, 'irods': True, 'orthanc': True} WARNING app.main:main.py:185 Failed to update default filter. WARNING services.gen3.gen3_service:gen3_service.py:94 Gen3 disconnected. ERROR services.gen3.gen3_service:gen3_service.py:98 Hit the max retry limit. Unable to reconnect. ERROR services.gen3.gen3_service:gen3_service.py:99 Failed to get an access token from https://gen3.abi-ctt-ctp.cloud.edu.au/user/credentials/cdis/access_token: <!doctype html> <html lang="en"> <head> <meta charset="utf-8"> <title>401</title> <link rel="stylesheet" href="/api/static/css/bootstrap.min.css"> <link href='https://fonts.googleapis.com/css?family=Source+Sans+Pro' rel='stylesheet' type='text/css'> <script src="https://ajax.googleapis.com/ajax/libs/jquery/1.11.3/jquery.min.js"></script> <script src="/api/static/js/bootstrap.min.js"></script> </head> <body> <main> <img class="error-page__logo" src="/user/static/img/logo.svg" /> <div class="error-page"> <div class="error-page__banner"> <h1>Gen3 Data Commons</h1> </div> <div class="error-page__status-code"> <div class="error-page__status-code-text"> <h1>401</h1> <h2>Unauthorized</h2> </div> <img class="error-page__picture" src="/user/static/img/404.svg" /> </div> <div class="error-page__information"> <p class="body">Error Identifier:</p> <p class="introduction">853bd55a-2d7f-4ce2-8545-893e9cd88c0f</p> <p class="body">Error Message:</p> <p class="introduction">[401] - Authentication Error: Signature has expired</p> <div> <p class="body">Please try again!</p> </div> </div> </div> </main> </body> <style type="text/css"> .body { font-size: 16px; color: #9b9b9b; margin: 0; } .introduction { font-size: 18px; font-weight: 500; line-height: 18px; letter-spacing: .03rem; color: #000000; display: inline-block; margin: 13px 0 13px 0; } .auth-data-logo { width: 314px; height: 116px; display: block; margin: auto; margin-bottom: 15px; } body { margin: 30px 30px; background-color: #F5F5F5; font-family: 'Source Sans Pro', sans-serif; } .error-page { width: 100%; display: flex; flex-flow: column; justify-content: center; background-color: white; border: 1px solid #9b9b9b; border-radius: 8px; } .error-page__logo { width: 100%; display: flex; margin-bottom: 15px; max-height: 116px; justify-content: center; } .error-page__banner { min-height: 70px; background-color: #3283C8; text-align: center; color: white; border-radius: 8px 8px 0 0; font-weight: lighter; } .error-page__status-code { display: flex; justify-content: center; align-items: center; margin: 60px 0 25px 0; text-align: center; background-color: white; } .error-page__status-code-text { display: flex; flex-flow: column; margin-right: 20px; } .error-page__status-code-text h1 { font-size: 155px; font-weight: lighter; margin: 0; line-height: 1em; } .error-page__status-code-text h2 { margin: 0; } .error-page__picture { height: 186px; margin-left: 20px; } .error-page__information { margin: 0 30px 60px 30px; border: 1px solid #9b9b9b; border-radius: 4px; background-color: #f5f5f5; padding: 20px 20px; } .error-page__information a { color: #3283C8; text-decoration: none; } </style> </html> _____________________________ test_get_gen3_record _____________________________ client = <starlette.testclient.TestClient object at 0x7f19490dcf70> token = {'detail': 'Please check the service (Gen3/iRODS) status'} def test_get_gen3_record(client, token): UUID = "5b9ae1bd-e780-4869-a458-b3422084c480" response = client.get( f"/record/{UUID}", > headers={"Authorization": f"Bearer {token['access_token']}"}, ) E KeyError: 'access_token' tests/test_api/test_gen3_api.py:28: KeyError ------------------------------ Captured log setup ------------------------------ WARNING services.gen3.gen3_service:gen3_service.py:94 Gen3 disconnected. ERROR services.gen3.gen3_service:gen3_service.py:98 Hit the max retry limit. Unable to reconnect. ERROR services.gen3.gen3_service:gen3_service.py:99 Failed to get an access token from https://gen3.abi-ctt-ctp.cloud.edu.au/user/credentials/cdis/access_token: Internal Server Error INFO app.main:main.py:166 {'gen3': False, 'irods': True, 'orthanc': True} WARNING app.main:main.py:185 Failed to update default filter. WARNING services.gen3.gen3_service:gen3_service.py:94 Gen3 disconnected. ERROR services.gen3.gen3_service:gen3_service.py:98 Hit the max retry limit. Unable to reconnect. ERROR services.gen3.gen3_service:gen3_service.py:99 Failed to get an access token from https://gen3.abi-ctt-ctp.cloud.edu.au/user/credentials/cdis/access_token: Internal Server Error _________________________ test_get_gen3_graphql_query __________________________ client = <starlette.testclient.TestClient object at 0x7f1949213c70> token = {'detail': 'Please check the service (Gen3/iRODS) status'} def test_get_gen3_graphql_query(client, token): DATASET_ID = "dataset-217-version-2" pass_case = { "node": "experiment_query", "filter": {"submitter_id": [DATASET_ID]}, "search": "", } response = client.post( "/graphql/query?mode=data", json=pass_case, > headers={"Authorization": f"Bearer {token['access_token']}"}, ) E KeyError: 'access_token' tests/test_api/test_gen3_api.py:57: KeyError ------------------------------ Captured log setup ------------------------------ WARNING services.gen3.gen3_service:gen3_service.py:94 Gen3 disconnected. ERROR services.gen3.gen3_service:gen3_service.py:98 Hit the max retry limit. Unable to reconnect. ERROR services.gen3.gen3_service:gen3_service.py:99 Failed to get an access token from https://gen3.abi-ctt-ctp.cloud.edu.au/user/credentials/cdis/access_token: Internal Server Error INFO app.main:main.py:166 {'gen3': False, 'irods': True, 'orthanc': True} WARNING app.main:main.py:185 Failed to update default filter. WARNING services.gen3.gen3_service:gen3_service.py:94 Gen3 disconnected. ERROR services.gen3.gen3_service:gen3_service.py:98 Hit the max retry limit. Unable to reconnect. ERROR services.gen3.gen3_service:gen3_service.py:99 Failed to get an access token from https://gen3.abi-ctt-ctp.cloud.edu.au/user/credentials/cdis/access_token: Internal Server Error _______________________ test_get_gen3_graphql_pagination _______________________ client = <starlette.testclient.TestClient object at 0x7f19491c8b20> token = {'detail': 'Please check the service (Gen3/iRODS) status'} def test_get_gen3_graphql_pagination(client, token): filter_pass_case = { "filter": { "dataset_description_filter>study_organ_system": ["Stomach", "Vagus nerve"], "manifest_filter>additional_types": ["Plot"], "case_filter>species": ["Rat"], "case_filter>sex": ["Male"], } } response = client.post( "/graphql/pagination", json=filter_pass_case, > headers={"Authorization": f"Bearer {token['access_token']}"}, ) E KeyError: 'access_token' tests/test_api/test_gen3_api.py:164: KeyError ------------------------------ Captured log setup ------------------------------ WARNING services.gen3.gen3_service:gen3_service.py:94 Gen3 disconnected. ERROR services.gen3.gen3_service:gen3_service.py:98 Hit the max retry limit. Unable to reconnect. ERROR services.gen3.gen3_service:gen3_service.py:99 Failed to get an access token from https://gen3.abi-ctt-ctp.cloud.edu.au/user/credentials/cdis/access_token: <!doctype html> <html lang="en"> <head> <meta charset="utf-8"> <title>401</title> <link rel="stylesheet" href="/api/static/css/bootstrap.min.css"> <link href='https://fonts.googleapis.com/css?family=Source+Sans+Pro' rel='stylesheet' type='text/css'> <script src="https://ajax.googleapis.com/ajax/libs/jquery/1.11.3/jquery.min.js"></script> <script src="/api/static/js/bootstrap.min.js"></script> </head> <body> <main> <img class="error-page__logo" src="/user/static/img/logo.svg" /> <div class="error-page"> <div class="error-page__banner"> <h1>Gen3 Data Commons</h1> </div> <div class="error-page__status-code"> <div class="error-page__status-code-text"> <h1>401</h1> <h2>Unauthorized</h2> </div> <img class="error-page__picture" src="/user/static/img/404.svg" /> </div> <div class="error-page__information"> <p class="body">Error Identifier:</p> <p class="introduction">8e9e5f88-5949-4fa7-95c1-0c7db251b481</p> <p class="body">Error Message:</p> <p class="introduction">[401] - Authentication Error: Signature has expired</p> <div> <p class="body">Please try again!</p> </div> </div> </div> </main> </body> <style type="text/css"> .body { font-size: 16px; color: #9b9b9b; margin: 0; } .introduction { font-size: 18px; font-weight: 500; line-height: 18px; letter-spacing: .03rem; color: #000000; display: inline-block; margin: 13px 0 13px 0; } .auth-data-logo { width: 314px; height: 116px; display: block; margin: auto; margin-bottom: 15px; } body { margin: 30px 30px; background-color: #F5F5F5; font-family: 'Source Sans Pro', sans-serif; } .error-page { width: 100%; display: flex; flex-flow: column; justify-content: center; background-color: white; border: 1px solid #9b9b9b; border-radius: 8px; } .error-page__logo { width: 100%; display: flex; margin-bottom: 15px; max-height: 116px; justify-content: center; } .error-page__banner { min-height: 70px; background-color: #3283C8; text-align: center; color: white; border-radius: 8px 8px 0 0; font-weight: lighter; } .error-page__status-code { display: flex; justify-content: center; align-items: center; margin: 60px 0 25px 0; text-align: center; background-color: white; } .error-page__status-code-text { display: flex; flex-flow: column; margin-right: 20px; } .error-page__status-code-text h1 { font-size: 155px; font-weight: lighter; margin: 0; line-height: 1em; } .error-page__status-code-text h2 { margin: 0; } .error-page__picture { height: 186px; margin-left: 20px; } .error-page__information { margin: 0 30px 60px 30px; border: 1px solid #9b9b9b; border-radius: 4px; background-color: #f5f5f5; padding: 20px 20px; } .error-page__information a { color: #3283C8; text-decoration: none; } </style> </html> INFO app.main:main.py:166 {'gen3': False, 'irods': True, 'orthanc': True} WARNING app.main:main.py:185 Failed to update default filter. WARNING services.gen3.gen3_service:gen3_service.py:94 Gen3 disconnected. ERROR services.gen3.gen3_service:gen3_service.py:98 Hit the max retry limit. Unable to reconnect. ERROR services.gen3.gen3_service:gen3_service.py:99 Failed to get an access token from https://gen3.abi-ctt-ctp.cloud.edu.au/user/credentials/cdis/access_token: <!doctype html> <html lang="en"> <head> <meta charset="utf-8"> <title>401</title> <link rel="stylesheet" href="/api/static/css/bootstrap.min.css"> <link href='https://fonts.googleapis.com/css?family=Source+Sans+Pro' rel='stylesheet' type='text/css'> <script src="https://ajax.googleapis.com/ajax/libs/jquery/1.11.3/jquery.min.js"></script> <script src="/api/static/js/bootstrap.min.js"></script> </head> <body> <main> <img class="error-page__logo" src="/user/static/img/logo.svg" /> <div class="error-page"> <div class="error-page__banner"> <h1>Gen3 Data Commons</h1> </div> <div class="error-page__status-code"> <div class="error-page__status-code-text"> <h1>401</h1> <h2>Unauthorized</h2> </div> <img class="error-page__picture" src="/user/static/img/404.svg" /> </div> <div class="error-page__information"> <p class="body">Error Identifier:</p> <p class="introduction">fe52711f-e18e-4d01-85ca-8dd39c0c60c8</p> <p class="body">Error Message:</p> <p class="introduction">[401] - Authentication Error: Signature has expired</p> <div> <p class="body">Please try again!</p> </div> </div> </div> </main> </body> <style type="text/css"> .body { font-size: 16px; color: #9b9b9b; margin: 0; } .introduction { font-size: 18px; font-weight: 500; line-height: 18px; letter-spacing: .03rem; color: #000000; display: inline-block; margin: 13px 0 13px 0; } .auth-data-logo { width: 314px; height: 116px; display: block; margin: auto; margin-bottom: 15px; } body { margin: 30px 30px; background-color: #F5F5F5; font-family: 'Source Sans Pro', sans-serif; } .error-page { width: 100%; display: flex; flex-flow: column; justify-content: center; background-color: white; border: 1px solid #9b9b9b; border-radius: 8px; } .error-page__logo { width: 100%; display: flex; margin-bottom: 15px; max-height: 116px; justify-content: center; } .error-page__banner { min-height: 70px; background-color: #3283C8; text-align: center; color: white; border-radius: 8px 8px 0 0; font-weight: lighter; } .error-page__status-code { display: flex; justify-content: center; align-items: center; margin: 60px 0 25px 0; text-align: center; background-color: white; } .error-page__status-code-text { display: flex; flex-flow: column; margin-right: 20px; } .error-page__status-code-text h1 { font-size: 155px; font-weight: lighter; margin: 0; line-height: 1em; } .error-page__status-code-text h2 { margin: 0; } .error-page__picture { height: 186px; margin-left: 20px; } .error-page__information { margin: 0 30px 60px 30px; border: 1px solid #9b9b9b; border-radius: 4px; background-color: #f5f5f5; padding: 20px 20px; } .error-page__information a { color: #3283C8; text-decoration: none; } </style> </html> _____________________________ test_get_gen3_filter _____________________________ client = <starlette.testclient.TestClient object at 0x7f19491c8c10> token = {'detail': 'Please check the service (Gen3/iRODS) status'} def test_get_gen3_filter(client, token): response = client.get( "/filter?sidebar=true", > headers={"Authorization": f"Bearer {token['access_token']}"}, ) E KeyError: 'access_token' tests/test_api/test_gen3_api.py:230: KeyError ------------------------------ Captured log setup ------------------------------ WARNING services.gen3.gen3_service:gen3_service.py:94 Gen3 disconnected. ERROR services.gen3.gen3_service:gen3_service.py:98 Hit the max retry limit. Unable to reconnect. ERROR services.gen3.gen3_service:gen3_service.py:99 Failed to get an access token from https://gen3.abi-ctt-ctp.cloud.edu.au/user/credentials/cdis/access_token: <!doctype html> <html lang="en"> <head> <meta charset="utf-8"> <title>401</title> <link rel="stylesheet" href="/api/static/css/bootstrap.min.css"> <link href='https://fonts.googleapis.com/css?family=Source+Sans+Pro' rel='stylesheet' type='text/css'> <script src="https://ajax.googleapis.com/ajax/libs/jquery/1.11.3/jquery.min.js"></script> <script src="/api/static/js/bootstrap.min.js"></script> </head> <body> <main> <img class="error-page__logo" src="/user/static/img/logo.svg" /> <div class="error-page"> <div class="error-page__banner"> <h1>Gen3 Data Commons</h1> </div> <div class="error-page__status-code"> <div class="error-page__status-code-text"> <h1>401</h1> <h2>Unauthorized</h2> </div> <img class="error-page__picture" src="/user/static/img/404.svg" /> </div> <div class="error-page__information"> <p class="body">Error Identifier:</p> <p class="introduction">e2643b7d-2022-4e82-9fa6-e0007769e66c</p> <p class="body">Error Message:</p> <p class="introduction">[401] - Authentication Error: Signature has expired</p> <div> <p class="body">Please try again!</p> </div> </div> </div> </main> </body> <style type="text/css"> .body { font-size: 16px; color: #9b9b9b; margin: 0; } .introduction { font-size: 18px; font-weight: 500; line-height: 18px; letter-spacing: .03rem; color: #000000; display: inline-block; margin: 13px 0 13px 0; } .auth-data-logo { width: 314px; height: 116px; display: block; margin: auto; margin-bottom: 15px; } body { margin: 30px 30px; background-color: #F5F5F5; font-family: 'Source Sans Pro', sans-serif; } .error-page { width: 100%; display: flex; flex-flow: column; justify-content: center; background-color: white; border: 1px solid #9b9b9b; border-radius: 8px; } .error-page__logo { width: 100%; display: flex; margin-bottom: 15px; max-height: 116px; justify-content: center; } .error-page__banner { min-height: 70px; background-color: #3283C8; text-align: center; color: white; border-radius: 8px 8px 0 0; font-weight: lighter; } .error-page__status-code { display: flex; justify-content: center; align-items: center; margin: 60px 0 25px 0; text-align: center; background-color: white; } .error-page__status-code-text { display: flex; flex-flow: column; margin-right: 20px; } .error-page__status-code-text h1 { font-size: 155px; font-weight: lighter; margin: 0; line-height: 1em; } .error-page__status-code-text h2 { margin: 0; } .error-page__picture { height: 186px; margin-left: 20px; } .error-page__information { margin: 0 30px 60px 30px; border: 1px solid #9b9b9b; border-radius: 4px; background-color: #f5f5f5; padding: 20px 20px; } .error-page__information a { color: #3283C8; text-decoration: none; } </style> </html> INFO app.main:main.py:166 {'gen3': False, 'irods': True, 'orthanc': True} WARNING app.main:main.py:185 Failed to update default filter. WARNING services.gen3.gen3_service:gen3_service.py:94 Gen3 disconnected. ERROR services.gen3.gen3_service:gen3_service.py:98 Hit the max retry limit. Unable to reconnect. ERROR services.gen3.gen3_service:gen3_service.py:99 Failed to get an access token from https://gen3.abi-ctt-ctp.cloud.edu.au/user/credentials/cdis/access_token: <!doctype html> <html lang="en"> <head> <meta charset="utf-8"> <title>401</title> <link rel="stylesheet" href="/api/static/css/bootstrap.min.css"> <link href='https://fonts.googleapis.com/css?family=Source+Sans+Pro' rel='stylesheet' type='text/css'> <script src="https://ajax.googleapis.com/ajax/libs/jquery/1.11.3/jquery.min.js"></script> <script src="/api/static/js/bootstrap.min.js"></script> </head> <body> <main> <img class="error-page__logo" src="/user/static/img/logo.svg" /> <div class="error-page"> <div class="error-page__banner"> <h1>Gen3 Data Commons</h1> </div> <div class="error-page__status-code"> <div class="error-page__status-code-text"> <h1>401</h1> <h2>Unauthorized</h2> </div> <img class="error-page__picture" src="/user/static/img/404.svg" /> </div> <div class="error-page__information"> <p class="body">Error Identifier:</p> <p class="introduction">f2bb65ba-03cc-493d-b19d-15aa3b9725ca</p> <p class="body">Error Message:</p> <p class="introduction">[401] - Authentication Error: Signature has expired</p> <div> <p class="body">Please try again!</p> </div> </div> </div> </main> </body> <style type="text/css"> .body { font-size: 16px; color: #9b9b9b; margin: 0; } .introduction { font-size: 18px; font-weight: 500; line-height: 18px; letter-spacing: .03rem; color: #000000; display: inline-block; margin: 13px 0 13px 0; } .auth-data-logo { width: 314px; height: 116px; display: block; margin: auto; margin-bottom: 15px; } body { margin: 30px 30px; background-color: #F5F5F5; font-family: 'Source Sans Pro', sans-serif; } .error-page { width: 100%; display: flex; flex-flow: column; justify-content: center; background-color: white; border: 1px solid #9b9b9b; border-radius: 8px; } .error-page__logo { width: 100%; display: flex; margin-bottom: 15px; max-height: 116px; justify-content: center; } .error-page__banner { min-height: 70px; background-color: #3283C8; text-align: center; color: white; border-radius: 8px 8px 0 0; font-weight: lighter; } .error-page__status-code { display: flex; justify-content: center; align-items: center; margin: 60px 0 25px 0; text-align: center; background-color: white; } .error-page__status-code-text { display: flex; flex-flow: column; margin-right: 20px; } .error-page__status-code-text h1 { font-size: 155px; font-weight: lighter; margin: 0; line-height: 1em; } .error-page__status-code-text h2 { margin: 0; } .error-page__picture { height: 186px; margin-left: 20px; } .error-page__information { margin: 0 30px 60px 30px; border: 1px solid #9b9b9b; border-radius: 4px; background-color: #f5f5f5; padding: 20px 20px; } .error-page__information a { color: #3283C8; text-decoration: none; } </style> </html> __________________________ test_get_irods_collection ___________________________ client = <starlette.testclient.TestClient object at 0x7f19492c2f10> token = {'detail': 'Please check the service (Gen3/iRODS) status'} def test_get_irods_collection(client, token): pass_case_root = {} response = client.post( "/collection", json=pass_case_root, > headers={"Authorization": f"Bearer {token['access_token']}"}, ) E KeyError: 'access_token' tests/test_api/test_irods_api.py:38: KeyError ------------------------------ Captured log setup ------------------------------ WARNING services.gen3.gen3_service:gen3_service.py:94 Gen3 disconnected. ERROR services.gen3.gen3_service:gen3_service.py:98 Hit the max retry limit. Unable to reconnect. ERROR services.gen3.gen3_service:gen3_service.py:99 Failed to get an access token from https://gen3.abi-ctt-ctp.cloud.edu.au/user/credentials/cdis/access_token: <!doctype html> <html lang="en"> <head> <meta charset="utf-8"> <title>401</title> <link rel="stylesheet" href="/api/static/css/bootstrap.min.css"> <link href='https://fonts.googleapis.com/css?family=Source+Sans+Pro' rel='stylesheet' type='text/css'> <script src="https://ajax.googleapis.com/ajax/libs/jquery/1.11.3/jquery.min.js"></script> <script src="/api/static/js/bootstrap.min.js"></script> </head> <body> <main> <img class="error-page__logo" src="/user/static/img/logo.svg" /> <div class="error-page"> <div class="error-page__banner"> <h1>Gen3 Data Commons</h1> </div> <div class="error-page__status-code"> <div class="error-page__status-code-text"> <h1>401</h1> <h2>Unauthorized</h2> </div> <img class="error-page__picture" src="/user/static/img/404.svg" /> </div> <div class="error-page__information"> <p class="body">Error Identifier:</p> <p class="introduction">3d2ab4fd-e375-432e-a30a-99b6a9d94dfe</p> <p class="body">Error Message:</p> <p class="introduction">[401] - Authentication Error: Signature has expired</p> <div> <p class="body">Please try again!</p> </div> </div> </div> </main> </body> <style type="text/css"> .body { font-size: 16px; color: #9b9b9b; margin: 0; } .introduction { font-size: 18px; font-weight: 500; line-height: 18px; letter-spacing: .03rem; color: #000000; display: inline-block; margin: 13px 0 13px 0; } .auth-data-logo { width: 314px; height: 116px; display: block; margin: auto; margin-bottom: 15px; } body { margin: 30px 30px; background-color: #F5F5F5; font-family: 'Source Sans Pro', sans-serif; } .error-page { width: 100%; display: flex; flex-flow: column; justify-content: center; background-color: white; border: 1px solid #9b9b9b; border-radius: 8px; } .error-page__logo { width: 100%; display: flex; margin-bottom: 15px; max-height: 116px; justify-content: center; } .error-page__banner { min-height: 70px; background-color: #3283C8; text-align: center; color: white; border-radius: 8px 8px 0 0; font-weight: lighter; } .error-page__status-code { display: flex; justify-content: center; align-items: center; margin: 60px 0 25px 0; text-align: center; background-color: white; } .error-page__status-code-text { display: flex; flex-flow: column; margin-right: 20px; } .error-page__status-code-text h1 { font-size: 155px; font-weight: lighter; margin: 0; line-height: 1em; } .error-page__status-code-text h2 { margin: 0; } .error-page__picture { height: 186px; margin-left: 20px; } .error-page__information { margin: 0 30px 60px 30px; border: 1px solid #9b9b9b; border-radius: 4px; background-color: #f5f5f5; padding: 20px 20px; } .error-page__information a { color: #3283C8; text-decoration: none; } </style> </html> INFO app.main:main.py:166 {'gen3': False, 'irods': True, 'orthanc': True} WARNING app.main:main.py:185 Failed to update default filter. WARNING services.gen3.gen3_service:gen3_service.py:94 Gen3 disconnected. ERROR services.gen3.gen3_service:gen3_service.py:98 Hit the max retry limit. Unable to reconnect. ERROR services.gen3.gen3_service:gen3_service.py:99 Failed to get an access token from https://gen3.abi-ctt-ctp.cloud.edu.au/user/credentials/cdis/access_token: <!doctype html> <html lang="en"> <head> <meta charset="utf-8"> <title>401</title> <link rel="stylesheet" href="/api/static/css/bootstrap.min.css"> <link href='https://fonts.googleapis.com/css?family=Source+Sans+Pro' rel='stylesheet' type='text/css'> <script src="https://ajax.googleapis.com/ajax/libs/jquery/1.11.3/jquery.min.js"></script> <script src="/api/static/js/bootstrap.min.js"></script> </head> <body> <main> <img class="error-page__logo" src="/user/static/img/logo.svg" /> <div class="error-page"> <div class="error-page__banner"> <h1>Gen3 Data Commons</h1> </div> <div class="error-page__status-code"> <div class="error-page__status-code-text"> <h1>401</h1> <h2>Unauthorized</h2> </div> <img class="error-page__picture" src="/user/static/img/404.svg" /> </div> <div class="error-page__information"> <p class="body">Error Identifier:</p> <p class="introduction">d2fe2e9a-6a4f-4526-b77f-837f9736b3c2</p> <p class="body">Error Message:</p> <p class="introduction">[401] - Authentication Error: Signature has expired</p> <div> <p class="body">Please try again!</p> </div> </div> </div> </main> </body> <style type="text/css"> .body { font-size: 16px; color: #9b9b9b; margin: 0; } .introduction { font-size: 18px; font-weight: 500; line-height: 18px; letter-spacing: .03rem; color: #000000; display: inline-block; margin: 13px 0 13px 0; } .auth-data-logo { width: 314px; height: 116px; display: block; margin: auto; margin-bottom: 15px; } body { margin: 30px 30px; background-color: #F5F5F5; font-family: 'Source Sans Pro', sans-serif; } .error-page { width: 100%; display: flex; flex-flow: column; justify-content: center; background-color: white; border: 1px solid #9b9b9b; border-radius: 8px; } .error-page__logo { width: 100%; display: flex; margin-bottom: 15px; max-height: 116px; justify-content: center; } .error-page__banner { min-height: 70px; background-color: #3283C8; text-align: center; color: white; border-radius: 8px 8px 0 0; font-weight: lighter; } .error-page__status-code { display: flex; justify-content: center; align-items: center; margin: 60px 0 25px 0; text-align: center; background-color: white; } .error-page__status-code-text { display: flex; flex-flow: column; margin-right: 20px; } .error-page__status-code-text h1 { font-size: 155px; font-weight: lighter; margin: 0; line-height: 1em; } .error-page__status-code-text h2 { margin: 0; } .error-page__picture { height: 186px; margin-left: 20px; } .error-page__information { margin: 0 30px 60px 30px; border: 1px solid #9b9b9b; border-radius: 4px; background-color: #f5f5f5; padding: 20px 20px; } .error-page__information a { color: #3283C8; text-decoration: none; } </style> </html> _____________________________ test_experiment_node _____________________________ client = <starlette.testclient.TestClient object at 0x7f194804db50> token = {'detail': 'Please check the service (Gen3/iRODS) status'} def test_experiment_node(client, token): UUID = "22c4459b-5f4f-4e62-abd2-2aa205fe838b" response = client.get( f"/record/{UUID}", > headers={"Authorization": f"Bearer {token['access_token']}"}, ) E KeyError: 'access_token' tests/test_data/test_gen3_data.py:33: KeyError ------------------------------ Captured log setup ------------------------------ WARNING services.gen3.gen3_service:gen3_service.py:94 Gen3 disconnected. ERROR services.gen3.gen3_service:gen3_service.py:98 Hit the max retry limit. Unable to reconnect. ERROR services.gen3.gen3_service:gen3_service.py:99 Failed to get an access token from https://gen3.abi-ctt-ctp.cloud.edu.au/user/credentials/cdis/access_token: Internal Server Error INFO app.main:main.py:166 {'gen3': False, 'irods': True, 'orthanc': True} WARNING app.main:main.py:185 Failed to update default filter. WARNING services.gen3.gen3_service:gen3_service.py:94 Gen3 disconnected. ERROR services.gen3.gen3_service:gen3_service.py:98 Hit the max retry limit. Unable to reconnect. ERROR services.gen3.gen3_service:gen3_service.py:99 Failed to get an access token from https://gen3.abi-ctt-ctp.cloud.edu.au/user/credentials/cdis/access_token: Internal Server Error ________________________ test_dataset_description_node _________________________ client = <starlette.testclient.TestClient object at 0x7f19492c2dc0> token = {'detail': 'Please check the service (Gen3/iRODS) status'} def test_dataset_description_node(client, token): UUID = "5b9ae1bd-e780-4869-a458-b3422084c480" response = client.get( f"/record/{UUID}", > headers={"Authorization": f"Bearer {token['access_token']}"}, ) E KeyError: 'access_token' tests/test_data/test_gen3_data.py:74: KeyError ------------------------------ Captured log setup ------------------------------ WARNING services.gen3.gen3_service:gen3_service.py:94 Gen3 disconnected. ERROR services.gen3.gen3_service:gen3_service.py:98 Hit the max retry limit. Unable to reconnect. ERROR services.gen3.gen3_service:gen3_service.py:99 Failed to get an access token from https://gen3.abi-ctt-ctp.cloud.edu.au/user/credentials/cdis/access_token: <!doctype html> <html lang="en"> <head> <meta charset="utf-8"> <title>401</title> <link rel="stylesheet" href="/api/static/css/bootstrap.min.css"> <link href='https://fonts.googleapis.com/css?family=Source+Sans+Pro' rel='stylesheet' type='text/css'> <script src="https://ajax.googleapis.com/ajax/libs/jquery/1.11.3/jquery.min.js"></script> <script src="/api/static/js/bootstrap.min.js"></script> </head> <body> <main> <img class="error-page__logo" src="/user/static/img/logo.svg" /> <div class="error-page"> <div class="error-page__banner"> <h1>Gen3 Data Commons</h1> </div> <div class="error-page__status-code"> <div class="error-page__status-code-text"> <h1>401</h1> <h2>Unauthorized</h2> </div> <img class="error-page__picture" src="/user/static/img/404.svg" /> </div> <div class="error-page__information"> <p class="body">Error Identifier:</p> <p class="introduction">d8fb3344-0d14-4d3e-9392-1e3d8bed44aa</p> <p class="body">Error Message:</p> <p class="introduction">[401] - Authentication Error: Signature has expired</p> <div> <p class="body">Please try again!</p> </div> </div> </div> </main> </body> <style type="text/css"> .body { font-size: 16px; color: #9b9b9b; margin: 0; } .introduction { font-size: 18px; font-weight: 500; line-height: 18px; letter-spacing: .03rem; color: #000000; display: inline-block; margin: 13px 0 13px 0; } .auth-data-logo { width: 314px; height: 116px; display: block; margin: auto; margin-bottom: 15px; } body { margin: 30px 30px; background-color: #F5F5F5; font-family: 'Source Sans Pro', sans-serif; } .error-page { width: 100%; display: flex; flex-flow: column; justify-content: center; background-color: white; border: 1px solid #9b9b9b; border-radius: 8px; } .error-page__logo { width: 100%; display: flex; margin-bottom: 15px; max-height: 116px; justify-content: center; } .error-page__banner { min-height: 70px; background-color: #3283C8; text-align: center; color: white; border-radius: 8px 8px 0 0; font-weight: lighter; } .error-page__status-code { display: flex; justify-content: center; align-items: center; margin: 60px 0 25px 0; text-align: center; background-color: white; } .error-page__status-code-text { display: flex; flex-flow: column; margin-right: 20px; } .error-page__status-code-text h1 { font-size: 155px; font-weight: lighter; margin: 0; line-height: 1em; } .error-page__status-code-text h2 { margin: 0; } .error-page__picture { height: 186px; margin-left: 20px; } .error-page__information { margin: 0 30px 60px 30px; border: 1px solid #9b9b9b; border-radius: 4px; background-color: #f5f5f5; padding: 20px 20px; } .error-page__information a { color: #3283C8; text-decoration: none; } </style> </html> INFO app.main:main.py:166 {'gen3': False, 'irods': True, 'orthanc': True} WARNING app.main:main.py:185 Failed to update default filter. WARNING services.gen3.gen3_service:gen3_service.py:94 Gen3 disconnected. ERROR services.gen3.gen3_service:gen3_service.py:98 Hit the max retry limit. Unable to reconnect. ERROR services.gen3.gen3_service:gen3_service.py:99 Failed to get an access token from https://gen3.abi-ctt-ctp.cloud.edu.au/user/credentials/cdis/access_token: Internal Server Error ______________________________ test_manifest_node ______________________________ client = <starlette.testclient.TestClient object at 0x7f19490edc70> token = {'detail': 'Please check the service (Gen3/iRODS) status'} def test_manifest_node(client, token): UUID = "fd65a93f-ff62-45e4-b7b6-96419ef4f749" response = client.get( f"/record/{UUID}", > headers={"Authorization": f"Bearer {token['access_token']}"}, ) E KeyError: 'access_token' tests/test_data/test_gen3_data.py:175: KeyError ------------------------------ Captured log setup ------------------------------ WARNING services.gen3.gen3_service:gen3_service.py:94 Gen3 disconnected. ERROR services.gen3.gen3_service:gen3_service.py:98 Hit the max retry limit. Unable to reconnect. ERROR services.gen3.gen3_service:gen3_service.py:99 Failed to get an access token from https://gen3.abi-ctt-ctp.cloud.edu.au/user/credentials/cdis/access_token: Internal Server Error INFO app.main:main.py:166 {'gen3': False, 'irods': True, 'orthanc': True} WARNING app.main:main.py:185 Failed to update default filter. WARNING services.gen3.gen3_service:gen3_service.py:94 Gen3 disconnected. ERROR services.gen3.gen3_service:gen3_service.py:98 Hit the max retry limit. Unable to reconnect. ERROR services.gen3.gen3_service:gen3_service.py:99 Failed to get an access token from https://gen3.abi-ctt-ctp.cloud.edu.au/user/credentials/cdis/access_token: <!doctype html> <html lang="en"> <head> <meta charset="utf-8"> <title>401</title> <link rel="stylesheet" href="/api/static/css/bootstrap.min.css"> <link href='https://fonts.googleapis.com/css?family=Source+Sans+Pro' rel='stylesheet' type='text/css'> <script src="https://ajax.googleapis.com/ajax/libs/jquery/1.11.3/jquery.min.js"></script> <script src="/api/static/js/bootstrap.min.js"></script> </head> <body> <main> <img class="error-page__logo" src="/user/static/img/logo.svg" /> <div class="error-page"> <div class="error-page__banner"> <h1>Gen3 Data Commons</h1> </div> <div class="error-page__status-code"> <div class="error-page__status-code-text"> <h1>401</h1> <h2>Unauthorized</h2> </div> <img class="error-page__picture" src="/user/static/img/404.svg" /> </div> <div class="error-page__information"> <p class="body">Error Identifier:</p> <p class="introduction">3c290934-523d-484b-8c94-a5b4f444c086</p> <p class="body">Error Message:</p> <p class="introduction">[401] - Authentication Error: Signature has expired</p> <div> <p class="body">Please try again!</p> </div> </div> </div> </main> </body> <style type="text/css"> .body { font-size: 16px; color: #9b9b9b; margin: 0; } .introduction { font-size: 18px; font-weight: 500; line-height: 18px; letter-spacing: .03rem; color: #000000; display: inline-block; margin: 13px 0 13px 0; } .auth-data-logo { width: 314px; height: 116px; display: block; margin: auto; margin-bottom: 15px; } body { margin: 30px 30px; background-color: #F5F5F5; font-family: 'Source Sans Pro', sans-serif; } .error-page { width: 100%; display: flex; flex-flow: column; justify-content: center; background-color: white; border: 1px solid #9b9b9b; border-radius: 8px; } .error-page__logo { width: 100%; display: flex; margin-bottom: 15px; max-height: 116px; justify-content: center; } .error-page__banner { min-height: 70px; background-color: #3283C8; text-align: center; color: white; border-radius: 8px 8px 0 0; font-weight: lighter; } .error-page__status-code { display: flex; justify-content: center; align-items: center; margin: 60px 0 25px 0; text-align: center; background-color: white; } .error-page__status-code-text { display: flex; flex-flow: column; margin-right: 20px; } .error-page__status-code-text h1 { font-size: 155px; font-weight: lighter; margin: 0; line-height: 1em; } .error-page__status-code-text h2 { margin: 0; } .error-page__picture { height: 186px; margin-left: 20px; } .error-page__information { margin: 0 30px 60px 30px; border: 1px solid #9b9b9b; border-radius: 4px; background-color: #f5f5f5; padding: 20px 20px; } .error-page__information a { color: #3283C8; text-decoration: none; } </style> </html> ________________________________ test_case_node ________________________________ client = <starlette.testclient.TestClient object at 0x7f1949213bb0> token = {'detail': 'Please check the service (Gen3/iRODS) status'} def test_case_node(client, token): UUID = "c58ab983-6cf9-4174-a7a9-20cdf1d6bc33" response = client.get( f"/record/{UUID}", > headers={"Authorization": f"Bearer {token['access_token']}"}, ) E KeyError: 'access_token' tests/test_data/test_gen3_data.py:229: KeyError ------------------------------ Captured log setup ------------------------------ WARNING services.gen3.gen3_service:gen3_service.py:94 Gen3 disconnected. ERROR services.gen3.gen3_service:gen3_service.py:98 Hit the max retry limit. Unable to reconnect. ERROR services.gen3.gen3_service:gen3_service.py:99 Failed to get an access token from https://gen3.abi-ctt-ctp.cloud.edu.au/user/credentials/cdis/access_token: Internal Server Error INFO app.main:main.py:166 {'gen3': False, 'irods': True, 'orthanc': True} WARNING app.main:main.py:185 Failed to update default filter. WARNING services.gen3.gen3_service:gen3_service.py:94 Gen3 disconnected. ERROR services.gen3.gen3_service:gen3_service.py:98 Hit the max retry limit. Unable to reconnect. ERROR services.gen3.gen3_service:gen3_service.py:99 Failed to get an access token from https://gen3.abi-ctt-ctp.cloud.edu.au/user/credentials/cdis/access_token: <!doctype html> <html lang="en"> <head> <meta charset="utf-8"> <title>401</title> <link rel="stylesheet" href="/api/static/css/bootstrap.min.css"> <link href='https://fonts.googleapis.com/css?family=Source+Sans+Pro' rel='stylesheet' type='text/css'> <script src="https://ajax.googleapis.com/ajax/libs/jquery/1.11.3/jquery.min.js"></script> <script src="/api/static/js/bootstrap.min.js"></script> </head> <body> <main> <img class="error-page__logo" src="/user/static/img/logo.svg" /> <div class="error-page"> <div class="error-page__banner"> <h1>Gen3 Data Commons</h1> </div> <div class="error-page__status-code"> <div class="error-page__status-code-text"> <h1>401</h1> <h2>Unauthorized</h2> </div> <img class="error-page__picture" src="/user/static/img/404.svg" /> </div> <div class="error-page__information"> <p class="body">Error Identifier:</p> <p class="introduction">42f38f18-d23b-406c-8e83-b3605a69c9a8</p> <p class="body">Error Message:</p> <p class="introduction">[401] - Authentication Error: Signature has expired</p> <div> <p class="body">Please try again!</p> </div> </div> </div> </main> </body> <style type="text/css"> .body { font-size: 16px; color: #9b9b9b; margin: 0; } .introduction { font-size: 18px; font-weight: 500; line-height: 18px; letter-spacing: .03rem; color: #000000; display: inline-block; margin: 13px 0 13px 0; } .auth-data-logo { width: 314px; height: 116px; display: block; margin: auto; margin-bottom: 15px; } body { margin: 30px 30px; background-color: #F5F5F5; font-family: 'Source Sans Pro', sans-serif; } .error-page { width: 100%; display: flex; flex-flow: column; justify-content: center; background-color: white; border: 1px solid #9b9b9b; border-radius: 8px; } .error-page__logo { width: 100%; display: flex; margin-bottom: 15px; max-height: 116px; justify-content: center; } .error-page__banner { min-height: 70px; background-color: #3283C8; text-align: center; color: white; border-radius: 8px 8px 0 0; font-weight: lighter; } .error-page__status-code { display: flex; justify-content: center; align-items: center; margin: 60px 0 25px 0; text-align: center; background-color: white; } .error-page__status-code-text { display: flex; flex-flow: column; margin-right: 20px; } .error-page__status-code-text h1 { font-size: 155px; font-weight: lighter; margin: 0; line-height: 1em; } .error-page__status-code-text h2 { margin: 0; } .error-page__picture { height: 186px; margin-left: 20px; } .error-page__information { margin: 0 30px 60px 30px; border: 1px solid #9b9b9b; border-radius: 4px; background-color: #f5f5f5; padding: 20px 20px; } .error-page__information a { color: #3283C8; text-decoration: none; } </style> </html> ____________________________ test_irods_collection _____________________________ client = <starlette.testclient.TestClient object at 0x7f19491921f0> token = {'detail': 'Please check the service (Gen3/iRODS) status'} def test_irods_collection(client, token): payload1 = {"path": "/dataset-217-version-2"} response = client.post( "/collection", json=payload1, > headers={"Authorization": f"Bearer {token['access_token']}"}, ) E KeyError: 'access_token' tests/test_data/test_irods_data.py:29: KeyError ------------------------------ Captured log setup ------------------------------ WARNING services.gen3.gen3_service:gen3_service.py:94 Gen3 disconnected. ERROR services.gen3.gen3_service:gen3_service.py:98 Hit the max retry limit. Unable to reconnect. ERROR services.gen3.gen3_service:gen3_service.py:99 Failed to get an access token from https://gen3.abi-ctt-ctp.cloud.edu.au/user/credentials/cdis/access_token: <!doctype html> <html lang="en"> <head> <meta charset="utf-8"> <title>401</title> <link rel="stylesheet" href="/api/static/css/bootstrap.min.css"> <link href='https://fonts.googleapis.com/css?family=Source+Sans+Pro' rel='stylesheet' type='text/css'> <script src="https://ajax.googleapis.com/ajax/libs/jquery/1.11.3/jquery.min.js"></script> <script src="/api/static/js/bootstrap.min.js"></script> </head> <body> <main> <img class="error-page__logo" src="/user/static/img/logo.svg" /> <div class="error-page"> <div class="error-page__banner"> <h1>Gen3 Data Commons</h1> </div> <div class="error-page__status-code"> <div class="error-page__status-code-text"> <h1>401</h1> <h2>Unauthorized</h2> </div> <img class="error-page__picture" src="/user/static/img/404.svg" /> </div> <div class="error-page__information"> <p class="body">Error Identifier:</p> <p class="introduction">edbe6582-7eb3-42d8-94ca-61010e037af8</p> <p class="body">Error Message:</p> <p class="introduction">[401] - Authentication Error: Signature has expired</p> <div> <p class="body">Please try again!</p> </div> </div> </div> </main> </body> <style type="text/css"> .body { font-size: 16px; color: #9b9b9b; margin: 0; } .introduction { font-size: 18px; font-weight: 500; line-height: 18px; letter-spacing: .03rem; color: #000000; display: inline-block; margin: 13px 0 13px 0; } .auth-data-logo { width: 314px; height: 116px; display: block; margin: auto; margin-bottom: 15px; } body { margin: 30px 30px; background-color: #F5F5F5; font-family: 'Source Sans Pro', sans-serif; } .error-page { width: 100%; display: flex; flex-flow: column; justify-content: center; background-color: white; border: 1px solid #9b9b9b; border-radius: 8px; } .error-page__logo { width: 100%; display: flex; margin-bottom: 15px; max-height: 116px; justify-content: center; } .error-page__banner { min-height: 70px; background-color: #3283C8; text-align: center; color: white; border-radius: 8px 8px 0 0; font-weight: lighter; } .error-page__status-code { display: flex; justify-content: center; align-items: center; margin: 60px 0 25px 0; text-align: center; background-color: white; } .error-page__status-code-text { display: flex; flex-flow: column; margin-right: 20px; } .error-page__status-code-text h1 { font-size: 155px; font-weight: lighter; margin: 0; line-height: 1em; } .error-page__status-code-text h2 { margin: 0; } .error-page__picture { height: 186px; margin-left: 20px; } .error-page__information { margin: 0 30px 60px 30px; border: 1px solid #9b9b9b; border-radius: 4px; background-color: #f5f5f5; padding: 20px 20px; } .error-page__information a { color: #3283C8; text-decoration: none; } </style> </html> INFO app.main:main.py:166 {'gen3': False, 'irods': True, 'orthanc': True} WARNING app.main:main.py:185 Failed to update default filter. WARNING services.gen3.gen3_service:gen3_service.py:94 Gen3 disconnected. ERROR services.gen3.gen3_service:gen3_service.py:98 Hit the max retry limit. Unable to reconnect. ERROR services.gen3.gen3_service:gen3_service.py:99 Failed to get an access token from https://gen3.abi-ctt-ctp.cloud.edu.au/user/credentials/cdis/access_token: <!doctype html> <html lang="en"> <head> <meta charset="utf-8"> <title>401</title> <link rel="stylesheet" href="/api/static/css/bootstrap.min.css"> <link href='https://fonts.googleapis.com/css?family=Source+Sans+Pro' rel='stylesheet' type='text/css'> <script src="https://ajax.googleapis.com/ajax/libs/jquery/1.11.3/jquery.min.js"></script> <script src="/api/static/js/bootstrap.min.js"></script> </head> <body> <main> <img class="error-page__logo" src="/user/static/img/logo.svg" /> <div class="error-page"> <div class="error-page__banner"> <h1>Gen3 Data Commons</h1> </div> <div class="error-page__status-code"> <div class="error-page__status-code-text"> <h1>401</h1> <h2>Unauthorized</h2> </div> <img class="error-page__picture" src="/user/static/img/404.svg" /> </div> <div class="error-page__information"> <p class="body">Error Identifier:</p> <p class="introduction">3783882a-9c00-4376-b8a0-6f650f305c14</p> <p class="body">Error Message:</p> <p class="introduction">[401] - Authentication Error: Signature has expired</p> <div> <p class="body">Please try again!</p> </div> </div> </div> </main> </body> <style type="text/css"> .body { font-size: 16px; color: #9b9b9b; margin: 0; } .introduction { font-size: 18px; font-weight: 500; line-height: 18px; letter-spacing: .03rem; color: #000000; display: inline-block; margin: 13px 0 13px 0; } .auth-data-logo { width: 314px; height: 116px; display: block; margin: auto; margin-bottom: 15px; } body { margin: 30px 30px; background-color: #F5F5F5; font-family: 'Source Sans Pro', sans-serif; } .error-page { width: 100%; display: flex; flex-flow: column; justify-content: center; background-color: white; border: 1px solid #9b9b9b; border-radius: 8px; } .error-page__logo { width: 100%; display: flex; margin-bottom: 15px; max-height: 116px; justify-content: center; } .error-page__banner { min-height: 70px; background-color: #3283C8; text-align: center; color: white; border-radius: 8px 8px 0 0; font-weight: lighter; } .error-page__status-code { display: flex; justify-content: center; align-items: center; margin: 60px 0 25px 0; text-align: center; background-color: white; } .error-page__status-code-text { display: flex; flex-flow: column; margin-right: 20px; } .error-page__status-code-text h1 { font-size: 155px; font-weight: lighter; margin: 0; line-height: 1em; } .error-page__status-code-text h2 { margin: 0; } .error-page__picture { height: 186px; margin-left: 20px; } .error-page__information { margin: 0 30px 60px 30px; border: 1px solid #9b9b9b; border-radius: 4px; background-color: #f5f5f5; padding: 20px 20px; } .error-page__information a { color: #3283C8; text-decoration: none; } </style> </html> =========================== short test summary info ============================ FAILED tests/test_api/test_access_api.py::test_create_access - assert 500 == 400 FAILED tests/test_api/test_access_api.py::test_create_one_off_access - KeyErr... FAILED tests/test_api/test_access_api.py::test_revoke_access - KeyError: 'acc... FAILED tests/test_api/test_gen3_api.py::test_get_gen3_record - KeyError: 'acc... FAILED tests/test_api/test_gen3_api.py::test_get_gen3_graphql_query - KeyErro... FAILED tests/test_api/test_gen3_api.py::test_get_gen3_graphql_pagination - Ke... FAILED tests/test_api/test_gen3_api.py::test_get_gen3_filter - KeyError: 'acc... FAILED tests/test_api/test_irods_api.py::test_get_irods_collection - KeyError... FAILED tests/test_data/test_gen3_data.py::test_experiment_node - KeyError: 'a... FAILED tests/test_data/test_gen3_data.py::test_dataset_description_node - Key... FAILED tests/test_data/test_gen3_data.py::test_manifest_node - KeyError: 'acc... FAILED tests/test_data/test_gen3_data.py::test_case_node - KeyError: 'access_... FAILED tests/test_data/test_irods_data.py::test_irods_collection - KeyError: ... ERROR tests/test_api/test_irods_api.py::test_get_irods_data_file - KeyError: ... ============== 13 failed, 25 passed, 1 error in 85.37s (0:01:25) =============== Build step 'Virtualenv Builder' marked build as failure [Slack Notifications] found #2068 as previous completed, non-aborted build [Slack Notifications] will send OnEveryFailureNotification because build matches and user preferences allow it Finished: FAILURE