Started by timer
Running as SYSTEM
Building remotely on <a href='/jenkins/computer/Ubuntu_18.04_bioeng49' class='jenkins-table__link model-link model-link--float'>Ubuntu_18.04_bioeng49</a> (buildslave Testing) in workspace /home/cmiss/Jenkins/workspace/SCKAN Connectivity
[WS-CLEANUP] Deleting project workspace...
[WS-CLEANUP] Deferred wipeout is used...
[WS-CLEANUP] Done
The recommended git tool is: NONE
No credentials specified
Cloning the remote Git repository
Cloning repository <a href='https://github.com/alan-wu/scicrunch-knowledge-testing.git'>https://github.com/alan-wu/scicrunch-knowledge-testing.git</a>
 &gt; git init /home/cmiss/Jenkins/workspace/SCKAN Connectivity # timeout=10
Fetching upstream changes from <a href='https://github.com/alan-wu/scicrunch-knowledge-testing.git'>https://github.com/alan-wu/scicrunch-knowledge-testing.git</a>
 &gt; git --version # timeout=10
 &gt; git --version # 'git version 2.25.1'
 &gt; git fetch --tags --force --progress -- <a href='https://github.com/alan-wu/scicrunch-knowledge-testing.git'>https://github.com/alan-wu/scicrunch-knowledge-testing.git</a> +refs/heads/*:refs/remotes/origin/* # timeout=10
 &gt; git config remote.origin.url <a href='https://github.com/alan-wu/scicrunch-knowledge-testing.git'>https://github.com/alan-wu/scicrunch-knowledge-testing.git</a> # timeout=10
 &gt; git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10
Avoid second fetch
 &gt; git rev-parse refs/remotes/origin/main^{commit} # timeout=10
Checking out Revision 3d05adb35e4bcf1e06033cba3e971c2ec60eb068 (refs/remotes/origin/main)
 &gt; git config core.sparsecheckout # timeout=10
 &gt; git checkout -f 3d05adb35e4bcf1e06033cba3e971c2ec60eb068 # timeout=10
Commit message: "Merge pull request #17 from alan-wu/main"
 &gt; git rev-list --no-walk 3d05adb35e4bcf1e06033cba3e971c2ec60eb068 # timeout=10
[SCKAN Connectivity] $ /bin/sh -xe /tmp/shiningpanda3791819909218931309.sh
+ export SCICRUNCH_API_HOST=<a href='https://scicrunch.org/api/1/elastic/SPARC_PortalDatasets_pr'>https://scicrunch.org/api/1/elastic/SPARC_PortalDatasets_pr</a>
+ pip install -r requirements.txt
Collecting mapknowledge@ <a href='https://github.com/AnatomicMaps/map-knowledge/releases/download/v0.13.1/mapknowledge-0.13.1-py3-none-any.whl'>https://github.com/AnatomicMaps/map-knowledge/releases/download/v0.13.1/mapknowledge-0.13.1-py3-none-any.whl</a>
  Downloading <a href='https://github.com/AnatomicMaps/map-knowledge/releases/download/v0.13.1/mapknowledge-0.13.1-py3-none-any.whl'>https://github.com/AnatomicMaps/map-knowledge/releases/download/v0.13.1/mapknowledge-0.13.1-py3-none-any.whl</a> (18 kB)
Requirement already satisfied: requests==2.28.1 in /home/cmiss/Jenkins/shiningpanda/jobs/5a3744f0/virtualenvs/d41d8cd9/lib/python3.8/site-packages (from -r requirements.txt (line 1)) (2.28.1)
Requirement already satisfied: algoliasearch==2.6.2 in /home/cmiss/Jenkins/shiningpanda/jobs/5a3744f0/virtualenvs/d41d8cd9/lib/python3.8/site-packages (from -r requirements.txt (line 2)) (2.6.2)
Requirement already satisfied: boto3==1.17.67 in /home/cmiss/Jenkins/shiningpanda/jobs/5a3744f0/virtualenvs/d41d8cd9/lib/python3.8/site-packages (from -r requirements.txt (line 3)) (1.17.67)
Requirement already satisfied: ftfy==6.1.1 in /home/cmiss/Jenkins/shiningpanda/jobs/5a3744f0/virtualenvs/d41d8cd9/lib/python3.8/site-packages (from -r requirements.txt (line 4)) (6.1.1)
Requirement already satisfied: urllib3&lt;1.27,&gt;=1.21.1 in /home/cmiss/Jenkins/shiningpanda/jobs/5a3744f0/virtualenvs/d41d8cd9/lib/python3.8/site-packages (from requests==2.28.1-&gt;-r requirements.txt (line 1)) (1.26.12)
Requirement already satisfied: certifi&gt;=2017.4.17 in /home/cmiss/Jenkins/shiningpanda/jobs/5a3744f0/virtualenvs/d41d8cd9/lib/python3.8/site-packages (from requests==2.28.1-&gt;-r requirements.txt (line 1)) (2022.9.24)
Requirement already satisfied: charset-normalizer&lt;3,&gt;=2 in /home/cmiss/Jenkins/shiningpanda/jobs/5a3744f0/virtualenvs/d41d8cd9/lib/python3.8/site-packages (from requests==2.28.1-&gt;-r requirements.txt (line 1)) (2.0.12)
Requirement already satisfied: idna&lt;4,&gt;=2.5 in /home/cmiss/Jenkins/shiningpanda/jobs/5a3744f0/virtualenvs/d41d8cd9/lib/python3.8/site-packages (from requests==2.28.1-&gt;-r requirements.txt (line 1)) (3.4)
Requirement already satisfied: s3transfer&lt;0.5.0,&gt;=0.4.0 in /home/cmiss/Jenkins/shiningpanda/jobs/5a3744f0/virtualenvs/d41d8cd9/lib/python3.8/site-packages (from boto3==1.17.67-&gt;-r requirements.txt (line 3)) (0.4.2)
Requirement already satisfied: botocore&lt;1.21.0,&gt;=1.20.67 in /home/cmiss/Jenkins/shiningpanda/jobs/5a3744f0/virtualenvs/d41d8cd9/lib/python3.8/site-packages (from boto3==1.17.67-&gt;-r requirements.txt (line 3)) (1.20.112)
Requirement already satisfied: jmespath&lt;1.0.0,&gt;=0.7.1 in /home/cmiss/Jenkins/shiningpanda/jobs/5a3744f0/virtualenvs/d41d8cd9/lib/python3.8/site-packages (from boto3==1.17.67-&gt;-r requirements.txt (line 3)) (0.10.0)
Requirement already satisfied: wcwidth&gt;=0.2.5 in /home/cmiss/Jenkins/shiningpanda/jobs/5a3744f0/virtualenvs/d41d8cd9/lib/python3.8/site-packages (from ftfy==6.1.1-&gt;-r requirements.txt (line 4)) (0.2.6)
Requirement already satisfied: networkx&lt;3.0.0,&gt;=2.8.8 in /home/cmiss/Jenkins/shiningpanda/jobs/5a3744f0/virtualenvs/d41d8cd9/lib/python3.8/site-packages (from mapknowledge@ <a href='https://github.com/AnatomicMaps/map-knowledge/releases/download/v0.13.1/mapknowledge-0.13.1-py3-none-any.whl-'>https://github.com/AnatomicMaps/map-knowledge/releases/download/v0.13.1/mapknowledge-0.13.1-py3-none-any.whl-</a>&gt;-r requirements.txt (line 5)) (2.8.8)
Requirement already satisfied: rdflib&lt;7.0.0,&gt;=6.2.0 in /home/cmiss/Jenkins/shiningpanda/jobs/5a3744f0/virtualenvs/d41d8cd9/lib/python3.8/site-packages (from mapknowledge@ <a href='https://github.com/AnatomicMaps/map-knowledge/releases/download/v0.13.1/mapknowledge-0.13.1-py3-none-any.whl-'>https://github.com/AnatomicMaps/map-knowledge/releases/download/v0.13.1/mapknowledge-0.13.1-py3-none-any.whl-</a>&gt;-r requirements.txt (line 5)) (6.2.0)
Requirement already satisfied: python-dateutil&lt;3.0.0,&gt;=2.1 in /home/cmiss/Jenkins/shiningpanda/jobs/5a3744f0/virtualenvs/d41d8cd9/lib/python3.8/site-packages (from botocore&lt;1.21.0,&gt;=1.20.67-&gt;boto3==1.17.67-&gt;-r requirements.txt (line 3)) (2.8.2)
Requirement already satisfied: isodate in /home/cmiss/Jenkins/shiningpanda/jobs/5a3744f0/virtualenvs/d41d8cd9/lib/python3.8/site-packages (from rdflib&lt;7.0.0,&gt;=6.2.0-&gt;mapknowledge@ <a href='https://github.com/AnatomicMaps/map-knowledge/releases/download/v0.13.1/mapknowledge-0.13.1-py3-none-any.whl-'>https://github.com/AnatomicMaps/map-knowledge/releases/download/v0.13.1/mapknowledge-0.13.1-py3-none-any.whl-</a>&gt;-r requirements.txt (line 5)) (0.6.1)
Requirement already satisfied: setuptools in /home/cmiss/Jenkins/shiningpanda/jobs/5a3744f0/virtualenvs/d41d8cd9/lib/python3.8/site-packages (from rdflib&lt;7.0.0,&gt;=6.2.0-&gt;mapknowledge@ <a href='https://github.com/AnatomicMaps/map-knowledge/releases/download/v0.13.1/mapknowledge-0.13.1-py3-none-any.whl-'>https://github.com/AnatomicMaps/map-knowledge/releases/download/v0.13.1/mapknowledge-0.13.1-py3-none-any.whl-</a>&gt;-r requirements.txt (line 5)) (65.6.0)
Requirement already satisfied: pyparsing in /home/cmiss/Jenkins/shiningpanda/jobs/5a3744f0/virtualenvs/d41d8cd9/lib/python3.8/site-packages (from rdflib&lt;7.0.0,&gt;=6.2.0-&gt;mapknowledge@ <a href='https://github.com/AnatomicMaps/map-knowledge/releases/download/v0.13.1/mapknowledge-0.13.1-py3-none-any.whl-'>https://github.com/AnatomicMaps/map-knowledge/releases/download/v0.13.1/mapknowledge-0.13.1-py3-none-any.whl-</a>&gt;-r requirements.txt (line 5)) (3.0.9)
Requirement already satisfied: six&gt;=1.5 in /home/cmiss/Jenkins/shiningpanda/jobs/5a3744f0/virtualenvs/d41d8cd9/lib/python3.8/site-packages (from python-dateutil&lt;3.0.0,&gt;=2.1-&gt;botocore&lt;1.21.0,&gt;=1.20.67-&gt;boto3==1.17.67-&gt;-r requirements.txt (line 3)) (1.16.0)

[notice] A new release of pip available: 22.3.1 -&gt; 24.3.1
[notice] To update, run: pip install --upgrade pip
+ python -m unittest tests/nightly_tests/test_connectivity.py
..
----------------------------------------------------------------------
Ran 2 tests in 16.509s

OK
[Slack Notifications] found #749 as previous completed, non-aborted build
Finished: SUCCESS