# Trigger any extra validation we need to do.
try:
> self._validate_conn(conn)
../../shiningpanda/jobs/c6a9534b/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py:382:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
self = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7fdbb6afdf70>
conn = <urllib3.connection.HTTPSConnection object at 0x7fdbb433d370>
def _validate_conn(self, conn):
"""
Called right before a request is made, after the socket is created.
"""
super(HTTPSConnectionPool, self)._validate_conn(conn)
# Force connect early to allow us to validate the connection.
if not getattr(conn, "sock", None): # AppEngine might not have `.sock`
> conn.connect()
../../shiningpanda/jobs/c6a9534b/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py:1010:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
self = <urllib3.connection.HTTPSConnection object at 0x7fdbb433d370>
def connect(self):
# Add certificate verification
conn = self._new_conn()
hostname = self.host
tls_in_tls = False
if self._is_using_tunnel():
if self.tls_in_tls_required:
conn = self._connect_tls_proxy(hostname, conn)
tls_in_tls = True
self.sock = conn
# Calls self._set_hostport(), so self.host is
# self._tunnel_host below.
self._tunnel()
# Mark this connection as not reusable
self.auto_open = 0
# Override the host with the one we're requesting data from.
hostname = self._tunnel_host
server_hostname = hostname
if self.server_hostname is not None:
server_hostname = self.server_hostname
is_time_off = datetime.date.today() < RECENT_DATE
if is_time_off:
warnings.warn(
(
"System time is way off (before {0}). This will probably "
"lead to SSL verification errors"
).format(RECENT_DATE),
SystemTimeWarning,
)
# Wrap socket using verification with the root certs in
# trusted_root_certs
default_ssl_context = False
if self.ssl_context is None:
default_ssl_context = True
self.ssl_context = create_urllib3_context(
ssl_version=resolve_ssl_version(self.ssl_version),
cert_reqs=resolve_cert_reqs(self.cert_reqs),
)
context = self.ssl_context
context.verify_mode = resolve_cert_reqs(self.cert_reqs)
# Try to load OS default certs if none are given.
# Works well on Windows (requires Python3.4+)
if (
not self.ca_certs
and not self.ca_cert_dir
and not self.ca_cert_data
and default_ssl_context
and hasattr(context, "load_default_certs")
):
context.load_default_certs()
> self.sock = ssl_wrap_socket(
sock=conn,
keyfile=self.key_file,
certfile=self.cert_file,
key_password=self.key_password,
ca_certs=self.ca_certs,
ca_cert_dir=self.ca_cert_dir,
ca_cert_data=self.ca_cert_data,
server_hostname=server_hostname,
ssl_context=context,
tls_in_tls=tls_in_tls,
)
../../shiningpanda/jobs/c6a9534b/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connection.py:411:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
sock = <socket.socket [closed] fd=-1, family=AddressFamily.AF_INET, type=SocketKind.SOCK_STREAM, proto=6>
keyfile = None, certfile = None, cert_reqs = None
ca_certs = '/home/cmiss/Jenkins/shiningpanda/jobs/c6a9534b/virtualenvs/d41d8cd9/lib/python3.9/site-packages/certifi/cacert.pem'
server_hostname = 'sparc.biolucida.net', ssl_version = None, ciphers = None
ssl_context = <ssl.SSLContext object at 0x7fdbb685b440>, ca_cert_dir = None
key_password = None, ca_cert_data = None, tls_in_tls = False
def ssl_wrap_socket(
sock,
keyfile=None,
certfile=None,
cert_reqs=None,
ca_certs=None,
server_hostname=None,
ssl_version=None,
ciphers=None,
ssl_context=None,
ca_cert_dir=None,
key_password=None,
ca_cert_data=None,
tls_in_tls=False,
):
"""
All arguments except for server_hostname, ssl_context, and ca_cert_dir have
the same meaning as they do when using :func:`ssl.wrap_socket`.
:param server_hostname:
When SNI is supported, the expected hostname of the certificate
:param ssl_context:
A pre-made :class:`SSLContext` object. If none is provided, one will
be created using :func:`create_urllib3_context`.
:param ciphers:
A string of ciphers we wish the client to support.
:param ca_cert_dir:
A directory containing CA certificates in multiple separate files, as
supported by OpenSSL's -CApath flag or the capath argument to
SSLContext.load_verify_locations().
:param key_password:
Optional password if the keyfile is encrypted.
:param ca_cert_data:
Optional string containing CA certificates in PEM format suitable for
passing as the cadata parameter to SSLContext.load_verify_locations()
:param tls_in_tls:
Use SSLTransport to wrap the existing socket.
"""
context = ssl_context
if context is None:
# Note: This branch of code and all the variables in it are no longer
# used by urllib3 itself. We should consider deprecating and removing
# this code.
context = create_urllib3_context(ssl_version, cert_reqs, ciphers=ciphers)
if ca_certs or ca_cert_dir or ca_cert_data:
try:
context.load_verify_locations(ca_certs, ca_cert_dir, ca_cert_data)
except (IOError, OSError) as e:
raise SSLError(e)
elif ssl_context is None and hasattr(context, "load_default_certs"):
# try to load OS default certs; works well on Windows (require Python3.4+)
context.load_default_certs()
# Attempt to detect if we get the goofy behavior of the
# keyfile being encrypted and OpenSSL asking for the
# passphrase via the terminal and instead error out.
if keyfile and key_password is None and _is_key_file_encrypted(keyfile):
raise SSLError("Client private key is encrypted, password is required")
if certfile:
if key_password is None:
context.load_cert_chain(certfile, keyfile)
else:
context.load_cert_chain(certfile, keyfile, key_password)
try:
if hasattr(context, "set_alpn_protocols"):
context.set_alpn_protocols(ALPN_PROTOCOLS)
except NotImplementedError:
pass
# If we detect server_hostname is an IP address then the SNI
# extension should not be used according to RFC3546 Section 3.1
use_sni_hostname = server_hostname and not is_ipaddress(server_hostname)
# SecureTransport uses server_hostname in certificate verification.
send_sni = (use_sni_hostname and HAS_SNI) or (
IS_SECURETRANSPORT and server_hostname
)
# Do not warn the user if server_hostname is an invalid SNI hostname.
if not HAS_SNI and use_sni_hostname:
warnings.warn(
"An HTTPS request has been made, but the SNI (Server Name "
"Indication) extension to TLS is not available on this platform. "
"This may cause the server to present an incorrect TLS "
"certificate, which can cause validation failures. You can upgrade to "
"a newer version of Python to solve this. For more information, see "
"https://urllib3.readthedocs.io/en/latest/advanced-usage.html"
"#ssl-warnings",
SNIMissingWarning,
)
if send_sni:
> ssl_sock = _ssl_wrap_socket_impl(
sock, context, tls_in_tls, server_hostname=server_hostname
)
../../shiningpanda/jobs/c6a9534b/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/util/ssl_.py:428:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
sock = <socket.socket [closed] fd=-1, family=AddressFamily.AF_INET, type=SocketKind.SOCK_STREAM, proto=6>
ssl_context = <ssl.SSLContext object at 0x7fdbb685b440>, tls_in_tls = False
server_hostname = 'sparc.biolucida.net'
def _ssl_wrap_socket_impl(sock, ssl_context, tls_in_tls, server_hostname=None):
if tls_in_tls:
if not SSLTransport:
# Import error, ssl is not available.
raise ProxySchemeUnsupported(
"TLS in TLS requires support for the 'ssl' module"
)
SSLTransport._validate_ssl_context_for_tls_in_tls(ssl_context)
return SSLTransport(sock, ssl_context, server_hostname)
if server_hostname:
> return ssl_context.wrap_socket(sock, server_hostname=server_hostname)
../../shiningpanda/jobs/c6a9534b/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/util/ssl_.py:472:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
self = <ssl.SSLContext object at 0x7fdbb685b440>
sock = <socket.socket [closed] fd=-1, family=AddressFamily.AF_INET, type=SocketKind.SOCK_STREAM, proto=6>
server_side = False, do_handshake_on_connect = True, suppress_ragged_eofs = True
server_hostname = 'sparc.biolucida.net', session = None
def wrap_socket(self, sock, server_side=False,
do_handshake_on_connect=True,
suppress_ragged_eofs=True,
server_hostname=None, session=None):
# SSLSocket class handles server_hostname encoding before it calls
# ctx._wrap_socket()
> return self.sslsocket_class._create(
sock=sock,
server_side=server_side,
do_handshake_on_connect=do_handshake_on_connect,
suppress_ragged_eofs=suppress_ragged_eofs,
server_hostname=server_hostname,
context=self,
session=session
)
/usr/lib/python3.9/ssl.py:501:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
cls = <class 'ssl.SSLSocket'>
sock = <socket.socket [closed] fd=-1, family=AddressFamily.AF_INET, type=SocketKind.SOCK_STREAM, proto=6>
server_side = False, do_handshake_on_connect = True, suppress_ragged_eofs = True
server_hostname = 'sparc.biolucida.net'
context = <ssl.SSLContext object at 0x7fdbb685b440>, session = None
@classmethod
def _create(cls, sock, server_side=False, do_handshake_on_connect=True,
suppress_ragged_eofs=True, server_hostname=None,
context=None, session=None):
if sock.getsockopt(SOL_SOCKET, SO_TYPE) != SOCK_STREAM:
raise NotImplementedError("only stream sockets are supported")
if server_side:
if server_hostname:
raise ValueError("server_hostname can only be specified "
"in client mode")
if session is not None:
raise ValueError("session can only be specified in "
"client mode")
if context.check_hostname and not server_hostname:
raise ValueError("check_hostname requires server_hostname")
kwargs = dict(
family=sock.family, type=sock.type, proto=sock.proto,
fileno=sock.fileno()
)
self = cls.__new__(cls, **kwargs)
super(SSLSocket, self).__init__(**kwargs)
sock_timeout = sock.gettimeout()
sock.detach()
self._context = context
self._session = session
self._closed = False
self._sslobj = None
self.server_side = server_side
self.server_hostname = context._encode_hostname(server_hostname)
self.do_handshake_on_connect = do_handshake_on_connect
self.suppress_ragged_eofs = suppress_ragged_eofs
# See if we are connected
try:
self.getpeername()
except OSError as e:
if e.errno != errno.ENOTCONN:
raise
connected = False
blocking = self.getblocking()
self.setblocking(False)
try:
# We are not connected so this is not supposed to block, but
# testing revealed otherwise on macOS and Windows so we do
# the non-blocking dance regardless. Our raise when any data
# is found means consuming the data is harmless.
notconn_pre_handshake_data = self.recv(1)
except OSError as e:
# EINVAL occurs for recv(1) on non-connected on unix sockets.
if e.errno not in (errno.ENOTCONN, errno.EINVAL):
raise
notconn_pre_handshake_data = b''
self.setblocking(blocking)
if notconn_pre_handshake_data:
# This prevents pending data sent to the socket before it was
# closed from escaping to the caller who could otherwise
# presume it came through a successful TLS connection.
reason = "Closed before TLS handshake with data in recv buffer."
notconn_pre_handshake_data_error = SSLError(e.errno, reason)
# Add the SSLError attributes that _ssl.c always adds.
notconn_pre_handshake_data_error.reason = reason
notconn_pre_handshake_data_error.library = None
try:
self.close()
except OSError:
pass
try:
raise notconn_pre_handshake_data_error
finally:
# Explicitly break the reference cycle.
notconn_pre_handshake_data_error = None
else:
connected = True
self.settimeout(sock_timeout) # Must come after setblocking() calls.
self._connected = connected
if connected:
# create the SSL object
try:
self._sslobj = self._context._wrap_socket(
self, server_side, self.server_hostname,
owner=self, session=self._session,
)
if do_handshake_on_connect:
timeout = self.gettimeout()
if timeout == 0.0:
# non-blocking
raise ValueError("do_handshake_on_connect should not be specified for non-blocking sockets")
> self.do_handshake()
/usr/lib/python3.9/ssl.py:1074:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
self = <ssl.SSLSocket [closed] fd=-1, family=AddressFamily.AF_INET, type=SocketKind.SOCK_STREAM, proto=6>
block = False
@_sslcopydoc
def do_handshake(self, block=False):
self._check_connected()
timeout = self.gettimeout()
try:
if timeout == 0.0 and block:
self.settimeout(None)
> self._sslobj.do_handshake()
E ConnectionResetError: [Errno 104] Connection reset by peer
/usr/lib/python3.9/ssl.py:1343: ConnectionResetError
During handling of the above exception, another exception occurred:
self = <requests.adapters.HTTPAdapter object at 0x7fdbb6ac3bb0>
request = <PreparedRequest [GET]>, stream = False
timeout = Timeout(connect=None, read=None, total=None), verify = True
cert = None, proxies = OrderedDict()
def send(self, request, stream=False, timeout=None, verify=True, cert=None, proxies=None):
"""Sends PreparedRequest object. Returns Response object.
:param request: The :class:`PreparedRequest <PreparedRequest>` being sent.
:param stream: (optional) Whether to stream the request content.
:param timeout: (optional) How long to wait for the server to send
data before giving up, as a float, or a :ref:`(connect timeout,
read timeout) <timeouts>` tuple.
:type timeout: float or tuple or urllib3 Timeout object
:param verify: (optional) Either a boolean, in which case it controls whether
we verify the server's TLS certificate, or a string, in which case it
must be a path to a CA bundle to use
:param cert: (optional) Any user-provided SSL certificate to be trusted.
:param proxies: (optional) The proxies dictionary to apply to the request.
:rtype: requests.Response
"""
try:
conn = self.get_connection(request.url, proxies)
except LocationValueError as e:
raise InvalidURL(e, request=request)
self.cert_verify(conn, request.url, verify, cert)
url = self.request_url(request, proxies)
self.add_headers(request, stream=stream, timeout=timeout, verify=verify, cert=cert, proxies=proxies)
chunked = not (request.body is None or 'Content-Length' in request.headers)
if isinstance(timeout, tuple):
try:
connect, read = timeout
timeout = TimeoutSauce(connect=connect, read=read)
except ValueError as e:
# this may raise a string formatting error.
err = ("Invalid timeout {}. Pass a (connect, read) "
"timeout tuple, or a single float to set "
"both timeouts to the same value".format(timeout))
raise ValueError(err)
elif isinstance(timeout, TimeoutSauce):
pass
else:
timeout = TimeoutSauce(connect=timeout, read=timeout)
try:
if not chunked:
> resp = conn.urlopen(
method=request.method,
url=url,
body=request.body,
headers=request.headers,
redirect=False,
assert_same_host=False,
preload_content=False,
decode_content=False,
retries=self.max_retries,
timeout=timeout
)
../../shiningpanda/jobs/c6a9534b/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/adapters.py:439:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
self = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7fdbb6afdf70>
method = 'GET'
url = '/thumbnail?datasetId=37&version=3&path=files%2Fderivative%2Fsub-54-5%2FTJU_3Scan_ratheart54-5_updated_06_11_19_Fiducials.xml'
body = None
headers = {'User-Agent': 'python-requests/2.25.1', 'Accept-Encoding': 'gzip, deflate', 'Accept': '*/*', 'Connection': 'keep-alive'}
retries = Retry(total=0, connect=None, read=False, redirect=None, status=None)
redirect = False, assert_same_host = False
timeout = Timeout(connect=None, read=None, total=None), pool_timeout = None
release_conn = False, chunked = False, body_pos = None
response_kw = {'decode_content': False, 'preload_content': False}
parsed_url = Url(scheme=None, auth=None, host=None, port=None, path='/thumbnail', query='datasetId=37&version=3&path=files%2Fderivative%2Fsub-54-5%2FTJU_3Scan_ratheart54-5_updated_06_11_19_Fiducials.xml', fragment=None)
destination_scheme = None, conn = None, release_this_conn = True
http_tunnel_required = False, err = None, clean_exit = False
def urlopen(
self,
method,
url,
body=None,
headers=None,
retries=None,
redirect=True,
assert_same_host=True,
timeout=_Default,
pool_timeout=None,
release_conn=None,
chunked=False,
body_pos=None,
**response_kw
):
"""
Get a connection from the pool and perform an HTTP request. This is the
lowest level call for making a request, so you'll need to specify all
the raw details.
.. note::
More commonly, it's appropriate to use a convenience method provided
by :class:`.RequestMethods`, such as :meth:`request`.
.. note::
`release_conn` will only behave as expected if
`preload_content=False` because we want to make
`preload_content=False` the default behaviour someday soon without
breaking backwards compatibility.
:param method:
HTTP request method (such as GET, POST, PUT, etc.)
:param url:
The URL to perform the request on.
:param body:
Data to send in the request body, either :class:`str`, :class:`bytes`,
an iterable of :class:`str`/:class:`bytes`, or a file-like object.
:param headers:
Dictionary of custom headers to send, such as User-Agent,
If-None-Match, etc. If None, pool headers are used. If provided,
these headers completely replace any pool-specific headers.
:param retries:
Configure the number of retries to allow before raising a
:class:`~urllib3.exceptions.MaxRetryError` exception.
Pass ``None`` to retry until you receive a response. Pass a
:class:`~urllib3.util.retry.Retry` object for fine-grained control
over different types of retries.
Pass an integer number to retry connection errors that many times,
but no other types of errors. Pass zero to never retry.
If ``False``, then retries are disabled and any exception is raised
immediately. Also, instead of raising a MaxRetryError on redirects,
the redirect response will be returned.
:type retries: :class:`~urllib3.util.retry.Retry`, False, or an int.
:param redirect:
If True, automatically handle redirects (status codes 301, 302,
303, 307, 308). Each redirect counts as a retry. Disabling retries
will disable redirect, too.
:param assert_same_host:
If ``True``, will make sure that the host of the pool requests is
consistent else will raise HostChangedError. When ``False``, you can
use the pool on an HTTP proxy and request foreign hosts.
:param timeout:
If specified, overrides the default timeout for this one
request. It may be a float (in seconds) or an instance of
:class:`urllib3.util.Timeout`.
:param pool_timeout:
If set and the pool is set to block=True, then this method will
block for ``pool_timeout`` seconds and raise EmptyPoolError if no
connection is available within the time period.
:param release_conn:
If False, then the urlopen call will not release the connection
back into the pool once a response is received (but will release if
you read the entire contents of the response such as when
`preload_content=True`). This is useful if you're not preloading
the response's content immediately. You will need to call
``r.release_conn()`` on the response ``r`` to return the connection
back into the pool. If None, it takes the value of
``response_kw.get('preload_content', True)``.
:param chunked:
If True, urllib3 will send the body using chunked transfer
encoding. Otherwise, urllib3 will send the body using the standard
content-length form. Defaults to False.
:param int body_pos:
Position to seek to in file-like body in the event of a retry or
redirect. Typically this won't need to be set because urllib3 will
auto-populate the value when needed.
:param \\**response_kw:
Additional parameters are passed to
:meth:`urllib3.response.HTTPResponse.from_httplib`
"""
parsed_url = parse_url(url)
destination_scheme = parsed_url.scheme
if headers is None:
headers = self.headers
if not isinstance(retries, Retry):
retries = Retry.from_int(retries, redirect=redirect, default=self.retries)
if release_conn is None:
release_conn = response_kw.get("preload_content", True)
# Check host
if assert_same_host and not self.is_same_host(url):
raise HostChangedError(self, url, retries)
# Ensure that the URL we're connecting to is properly encoded
if url.startswith("/"):
url = six.ensure_str(_encode_target(url))
else:
url = six.ensure_str(parsed_url.url)
conn = None
# Track whether `conn` needs to be released before
# returning/raising/recursing. Update this variable if necessary, and
# leave `release_conn` constant throughout the function. That way, if
# the function recurses, the original value of `release_conn` will be
# passed down into the recursive call, and its value will be respected.
#
# See issue #651 [1] for details.
#
# [1] <https://github.com/urllib3/urllib3/issues/651>
release_this_conn = release_conn
http_tunnel_required = connection_requires_http_tunnel(
self.proxy, self.proxy_config, destination_scheme
)
# Merge the proxy headers. Only done when not using HTTP CONNECT. We
# have to copy the headers dict so we can safely change it without those
# changes being reflected in anyone else's copy.
if not http_tunnel_required:
headers = headers.copy()
headers.update(self.proxy_headers)
# Must keep the exception bound to a separate variable or else Python 3
# complains about UnboundLocalError.
err = None
# Keep track of whether we cleanly exited the except block. This
# ensures we do proper cleanup in finally.
clean_exit = False
# Rewind body position, if needed. Record current position
# for future rewinds in the event of a redirect/retry.
body_pos = set_file_position(body, body_pos)
try:
# Request a connection from the queue.
timeout_obj = self._get_timeout(timeout)
conn = self._get_conn(timeout=pool_timeout)
conn.timeout = timeout_obj.connect_timeout
is_new_proxy_conn = self.proxy is not None and not getattr(
conn, "sock", None
)
if is_new_proxy_conn and http_tunnel_required:
self._prepare_proxy(conn)
# Make the request on the httplib connection object.
httplib_response = self._make_request(
conn,
method,
url,
timeout=timeout_obj,
body=body,
headers=headers,
chunked=chunked,
)
# If we're going to release the connection in ``finally:``, then
# the response doesn't need to know about the connection. Otherwise
# it will also try to release it and we'll have a double-release
# mess.
response_conn = conn if not release_conn else None
# Pass method to Response for length checking
response_kw["request_method"] = method
# Import httplib's response into our own wrapper object
response = self.ResponseCls.from_httplib(
httplib_response,
pool=self,
connection=response_conn,
retries=retries,
**response_kw
)
# Everything went great!
clean_exit = True
except EmptyPoolError:
# Didn't get a connection from the pool, no need to clean up
clean_exit = True
release_this_conn = False
raise
except (
TimeoutError,
HTTPException,
SocketError,
ProtocolError,
BaseSSLError,
SSLError,
CertificateError,
) as e:
# Discard the connection for these exceptions. It will be
# replaced during the next _get_conn() call.
clean_exit = False
if isinstance(e, (BaseSSLError, CertificateError)):
e = SSLError(e)
elif isinstance(e, (SocketError, NewConnectionError)) and self.proxy:
e = ProxyError("Cannot connect to proxy.", e)
elif isinstance(e, (SocketError, HTTPException)):
e = ProtocolError("Connection aborted.", e)
> retries = retries.increment(
method, url, error=e, _pool=self, _stacktrace=sys.exc_info()[2]
)
../../shiningpanda/jobs/c6a9534b/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py:755:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
self = Retry(total=0, connect=None, read=False, redirect=None, status=None)
method = 'GET'
url = '/thumbnail?datasetId=37&version=3&path=files%2Fderivative%2Fsub-54-5%2FTJU_3Scan_ratheart54-5_updated_06_11_19_Fiducials.xml'
response = None
error = ProtocolError('Connection aborted.', ConnectionResetError(104, 'Connection reset by peer'))
_pool = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7fdbb6afdf70>
_stacktrace = <traceback object at 0x7fdbbc2864c0>
def increment(
self,
method=None,
url=None,
response=None,
error=None,
_pool=None,
_stacktrace=None,
):
"""Return a new Retry object with incremented retry counters.
:param response: A response object, or None, if the server did not
return a response.
:type response: :class:`~urllib3.response.HTTPResponse`
:param Exception error: An error encountered during the request, or
None if the response was received successfully.
:return: A new ``Retry`` object.
"""
if self.total is False and error:
# Disabled, indicate to re-raise the error.
raise six.reraise(type(error), error, _stacktrace)
total = self.total
if total is not None:
total -= 1
connect = self.connect
read = self.read
redirect = self.redirect
status_count = self.status
other = self.other
cause = "unknown"
status = None
redirect_location = None
if error and self._is_connection_error(error):
# Connect retry?
if connect is False:
raise six.reraise(type(error), error, _stacktrace)
elif connect is not None:
connect -= 1
elif error and self._is_read_error(error):
# Read retry?
if read is False or not self._is_method_retryable(method):
> raise six.reraise(type(error), error, _stacktrace)
../../shiningpanda/jobs/c6a9534b/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/util/retry.py:532:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
tp = <class 'urllib3.exceptions.ProtocolError'>, value = None, tb = None
def reraise(tp, value, tb=None):
try:
if value is None:
value = tp()
if value.__traceback__ is not tb:
> raise value.with_traceback(tb)
../../shiningpanda/jobs/c6a9534b/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/packages/six.py:734:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
self = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7fdbb6afdf70>
method = 'GET'
url = '/thumbnail?datasetId=37&version=3&path=files%2Fderivative%2Fsub-54-5%2FTJU_3Scan_ratheart54-5_updated_06_11_19_Fiducials.xml'
body = None
headers = {'User-Agent': 'python-requests/2.25.1', 'Accept-Encoding': 'gzip, deflate', 'Accept': '*/*', 'Connection': 'keep-alive'}
retries = Retry(total=0, connect=None, read=False, redirect=None, status=None)
redirect = False, assert_same_host = False
timeout = Timeout(connect=None, read=None, total=None), pool_timeout = None
release_conn = False, chunked = False, body_pos = None
response_kw = {'decode_content': False, 'preload_content': False}
parsed_url = Url(scheme=None, auth=None, host=None, port=None, path='/thumbnail', query='datasetId=37&version=3&path=files%2Fderivative%2Fsub-54-5%2FTJU_3Scan_ratheart54-5_updated_06_11_19_Fiducials.xml', fragment=None)
destination_scheme = None, conn = None, release_this_conn = True
http_tunnel_required = False, err = None, clean_exit = False
def urlopen(
self,
method,
url,
body=None,
headers=None,
retries=None,
redirect=True,
assert_same_host=True,
timeout=_Default,
pool_timeout=None,
release_conn=None,
chunked=False,
body_pos=None,
**response_kw
):
"""
Get a connection from the pool and perform an HTTP request. This is the
lowest level call for making a request, so you'll need to specify all
the raw details.
.. note::
More commonly, it's appropriate to use a convenience method provided
by :class:`.RequestMethods`, such as :meth:`request`.
.. note::
`release_conn` will only behave as expected if
`preload_content=False` because we want to make
`preload_content=False` the default behaviour someday soon without
breaking backwards compatibility.
:param method:
HTTP request method (such as GET, POST, PUT, etc.)
:param url:
The URL to perform the request on.
:param body:
Data to send in the request body, either :class:`str`, :class:`bytes`,
an iterable of :class:`str`/:class:`bytes`, or a file-like object.
:param headers:
Dictionary of custom headers to send, such as User-Agent,
If-None-Match, etc. If None, pool headers are used. If provided,
these headers completely replace any pool-specific headers.
:param retries:
Configure the number of retries to allow before raising a
:class:`~urllib3.exceptions.MaxRetryError` exception.
Pass ``None`` to retry until you receive a response. Pass a
:class:`~urllib3.util.retry.Retry` object for fine-grained control
over different types of retries.
Pass an integer number to retry connection errors that many times,
but no other types of errors. Pass zero to never retry.
If ``False``, then retries are disabled and any exception is raised
immediately. Also, instead of raising a MaxRetryError on redirects,
the redirect response will be returned.
:type retries: :class:`~urllib3.util.retry.Retry`, False, or an int.
:param redirect:
If True, automatically handle redirects (status codes 301, 302,
303, 307, 308). Each redirect counts as a retry. Disabling retries
will disable redirect, too.
:param assert_same_host:
If ``True``, will make sure that the host of the pool requests is
consistent else will raise HostChangedError. When ``False``, you can
use the pool on an HTTP proxy and request foreign hosts.
:param timeout:
If specified, overrides the default timeout for this one
request. It may be a float (in seconds) or an instance of
:class:`urllib3.util.Timeout`.
:param pool_timeout:
If set and the pool is set to block=True, then this method will
block for ``pool_timeout`` seconds and raise EmptyPoolError if no
connection is available within the time period.
:param release_conn:
If False, then the urlopen call will not release the connection
back into the pool once a response is received (but will release if
you read the entire contents of the response such as when
`preload_content=True`). This is useful if you're not preloading
the response's content immediately. You will need to call
``r.release_conn()`` on the response ``r`` to return the connection
back into the pool. If None, it takes the value of
``response_kw.get('preload_content', True)``.
:param chunked:
If True, urllib3 will send the body using chunked transfer
encoding. Otherwise, urllib3 will send the body using the standard
content-length form. Defaults to False.
:param int body_pos:
Position to seek to in file-like body in the event of a retry or
redirect. Typically this won't need to be set because urllib3 will
auto-populate the value when needed.
:param \\**response_kw:
Additional parameters are passed to
:meth:`urllib3.response.HTTPResponse.from_httplib`
"""
parsed_url = parse_url(url)
destination_scheme = parsed_url.scheme
if headers is None:
headers = self.headers
if not isinstance(retries, Retry):
retries = Retry.from_int(retries, redirect=redirect, default=self.retries)
if release_conn is None:
release_conn = response_kw.get("preload_content", True)
# Check host
if assert_same_host and not self.is_same_host(url):
raise HostChangedError(self, url, retries)
# Ensure that the URL we're connecting to is properly encoded
if url.startswith("/"):
url = six.ensure_str(_encode_target(url))
else:
url = six.ensure_str(parsed_url.url)
conn = None
# Track whether `conn` needs to be released before
# returning/raising/recursing. Update this variable if necessary, and
# leave `release_conn` constant throughout the function. That way, if
# the function recurses, the original value of `release_conn` will be
# passed down into the recursive call, and its value will be respected.
#
# See issue #651 [1] for details.
#
# [1] <https://github.com/urllib3/urllib3/issues/651>
release_this_conn = release_conn
http_tunnel_required = connection_requires_http_tunnel(
self.proxy, self.proxy_config, destination_scheme
)
# Merge the proxy headers. Only done when not using HTTP CONNECT. We
# have to copy the headers dict so we can safely change it without those
# changes being reflected in anyone else's copy.
if not http_tunnel_required:
headers = headers.copy()
headers.update(self.proxy_headers)
# Must keep the exception bound to a separate variable or else Python 3
# complains about UnboundLocalError.
err = None
# Keep track of whether we cleanly exited the except block. This
# ensures we do proper cleanup in finally.
clean_exit = False
# Rewind body position, if needed. Record current position
# for future rewinds in the event of a redirect/retry.
body_pos = set_file_position(body, body_pos)
try:
# Request a connection from the queue.
timeout_obj = self._get_timeout(timeout)
conn = self._get_conn(timeout=pool_timeout)
conn.timeout = timeout_obj.connect_timeout
is_new_proxy_conn = self.proxy is not None and not getattr(
conn, "sock", None
)
if is_new_proxy_conn and http_tunnel_required:
self._prepare_proxy(conn)
# Make the request on the httplib connection object.
> httplib_response = self._make_request(
conn,
method,
url,
timeout=timeout_obj,
body=body,
headers=headers,
chunked=chunked,
)
../../shiningpanda/jobs/c6a9534b/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py:699:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
self = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7fdbb6afdf70>
conn = <urllib3.connection.HTTPSConnection object at 0x7fdbb433d370>
method = 'GET'
url = '/thumbnail?datasetId=37&version=3&path=files%2Fderivative%2Fsub-54-5%2FTJU_3Scan_ratheart54-5_updated_06_11_19_Fiducials.xml'
timeout = Timeout(connect=None, read=None, total=None), chunked = False
httplib_request_kw = {'body': None, 'headers': {'User-Agent': 'python-requests/2.25.1', 'Accept-Encoding': 'gzip, deflate', 'Accept': '*/*', 'Connection': 'keep-alive'}}
timeout_obj = Timeout(connect=None, read=None, total=None)
def _make_request(
self, conn, method, url, timeout=_Default, chunked=False, **httplib_request_kw
):
"""
Perform a request on a given urllib connection object taken from our
pool.
:param conn:
a connection from one of our connection pools
:param timeout:
Socket timeout in seconds for the request. This can be a
float or integer, which will set the same timeout value for
the socket connect and the socket read, or an instance of
:class:`urllib3.util.Timeout`, which gives you more fine-grained
control over your timeouts.
"""
self.num_requests += 1
timeout_obj = self._get_timeout(timeout)
timeout_obj.start_connect()
conn.timeout = timeout_obj.connect_timeout
# Trigger any extra validation we need to do.
try:
> self._validate_conn(conn)
../../shiningpanda/jobs/c6a9534b/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py:382:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
self = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7fdbb6afdf70>
conn = <urllib3.connection.HTTPSConnection object at 0x7fdbb433d370>
def _validate_conn(self, conn):
"""
Called right before a request is made, after the socket is created.
"""
super(HTTPSConnectionPool, self)._validate_conn(conn)
# Force connect early to allow us to validate the connection.
if not getattr(conn, "sock", None): # AppEngine might not have `.sock`
> conn.connect()
../../shiningpanda/jobs/c6a9534b/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py:1010:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
self = <urllib3.connection.HTTPSConnection object at 0x7fdbb433d370>
def connect(self):
# Add certificate verification
conn = self._new_conn()
hostname = self.host
tls_in_tls = False
if self._is_using_tunnel():
if self.tls_in_tls_required:
conn = self._connect_tls_proxy(hostname, conn)
tls_in_tls = True
self.sock = conn
# Calls self._set_hostport(), so self.host is
# self._tunnel_host below.
self._tunnel()
# Mark this connection as not reusable
self.auto_open = 0
# Override the host with the one we're requesting data from.
hostname = self._tunnel_host
server_hostname = hostname
if self.server_hostname is not None:
server_hostname = self.server_hostname
is_time_off = datetime.date.today() < RECENT_DATE
if is_time_off:
warnings.warn(
(
"System time is way off (before {0}). This will probably "
"lead to SSL verification errors"
).format(RECENT_DATE),
SystemTimeWarning,
)
# Wrap socket using verification with the root certs in
# trusted_root_certs
default_ssl_context = False
if self.ssl_context is None:
default_ssl_context = True
self.ssl_context = create_urllib3_context(
ssl_version=resolve_ssl_version(self.ssl_version),
cert_reqs=resolve_cert_reqs(self.cert_reqs),
)
context = self.ssl_context
context.verify_mode = resolve_cert_reqs(self.cert_reqs)
# Try to load OS default certs if none are given.
# Works well on Windows (requires Python3.4+)
if (
not self.ca_certs
and not self.ca_cert_dir
and not self.ca_cert_data
and default_ssl_context
and hasattr(context, "load_default_certs")
):
context.load_default_certs()
> self.sock = ssl_wrap_socket(
sock=conn,
keyfile=self.key_file,
certfile=self.cert_file,
key_password=self.key_password,
ca_certs=self.ca_certs,
ca_cert_dir=self.ca_cert_dir,
ca_cert_data=self.ca_cert_data,
server_hostname=server_hostname,
ssl_context=context,
tls_in_tls=tls_in_tls,
)
../../shiningpanda/jobs/c6a9534b/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connection.py:411:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
sock = <socket.socket [closed] fd=-1, family=AddressFamily.AF_INET, type=SocketKind.SOCK_STREAM, proto=6>
keyfile = None, certfile = None, cert_reqs = None
ca_certs = '/home/cmiss/Jenkins/shiningpanda/jobs/c6a9534b/virtualenvs/d41d8cd9/lib/python3.9/site-packages/certifi/cacert.pem'
server_hostname = 'sparc.biolucida.net', ssl_version = None, ciphers = None
ssl_context = <ssl.SSLContext object at 0x7fdbb685b440>, ca_cert_dir = None
key_password = None, ca_cert_data = None, tls_in_tls = False
def ssl_wrap_socket(
sock,
keyfile=None,
certfile=None,
cert_reqs=None,
ca_certs=None,
server_hostname=None,
ssl_version=None,
ciphers=None,
ssl_context=None,
ca_cert_dir=None,
key_password=None,
ca_cert_data=None,
tls_in_tls=False,
):
"""
All arguments except for server_hostname, ssl_context, and ca_cert_dir have
the same meaning as they do when using :func:`ssl.wrap_socket`.
:param server_hostname:
When SNI is supported, the expected hostname of the certificate
:param ssl_context:
A pre-made :class:`SSLContext` object. If none is provided, one will
be created using :func:`create_urllib3_context`.
:param ciphers:
A string of ciphers we wish the client to support.
:param ca_cert_dir:
A directory containing CA certificates in multiple separate files, as
supported by OpenSSL's -CApath flag or the capath argument to
SSLContext.load_verify_locations().
:param key_password:
Optional password if the keyfile is encrypted.
:param ca_cert_data:
Optional string containing CA certificates in PEM format suitable for
passing as the cadata parameter to SSLContext.load_verify_locations()
:param tls_in_tls:
Use SSLTransport to wrap the existing socket.
"""
context = ssl_context
if context is None:
# Note: This branch of code and all the variables in it are no longer
# used by urllib3 itself. We should consider deprecating and removing
# this code.
context = create_urllib3_context(ssl_version, cert_reqs, ciphers=ciphers)
if ca_certs or ca_cert_dir or ca_cert_data:
try:
context.load_verify_locations(ca_certs, ca_cert_dir, ca_cert_data)
except (IOError, OSError) as e:
raise SSLError(e)
elif ssl_context is None and hasattr(context, "load_default_certs"):
# try to load OS default certs; works well on Windows (require Python3.4+)
context.load_default_certs()
# Attempt to detect if we get the goofy behavior of the
# keyfile being encrypted and OpenSSL asking for the
# passphrase via the terminal and instead error out.
if keyfile and key_password is None and _is_key_file_encrypted(keyfile):
raise SSLError("Client private key is encrypted, password is required")
if certfile:
if key_password is None:
context.load_cert_chain(certfile, keyfile)
else:
context.load_cert_chain(certfile, keyfile, key_password)
try:
if hasattr(context, "set_alpn_protocols"):
context.set_alpn_protocols(ALPN_PROTOCOLS)
except NotImplementedError:
pass
# If we detect server_hostname is an IP address then the SNI
# extension should not be used according to RFC3546 Section 3.1
use_sni_hostname = server_hostname and not is_ipaddress(server_hostname)
# SecureTransport uses server_hostname in certificate verification.
send_sni = (use_sni_hostname and HAS_SNI) or (
IS_SECURETRANSPORT and server_hostname
)
# Do not warn the user if server_hostname is an invalid SNI hostname.
if not HAS_SNI and use_sni_hostname:
warnings.warn(
"An HTTPS request has been made, but the SNI (Server Name "
"Indication) extension to TLS is not available on this platform. "
"This may cause the server to present an incorrect TLS "
"certificate, which can cause validation failures. You can upgrade to "
"a newer version of Python to solve this. For more information, see "
"https://urllib3.readthedocs.io/en/latest/advanced-usage.html"
"#ssl-warnings",
SNIMissingWarning,
)
if send_sni:
> ssl_sock = _ssl_wrap_socket_impl(
sock, context, tls_in_tls, server_hostname=server_hostname
)
../../shiningpanda/jobs/c6a9534b/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/util/ssl_.py:428:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
sock = <socket.socket [closed] fd=-1, family=AddressFamily.AF_INET, type=SocketKind.SOCK_STREAM, proto=6>
ssl_context = <ssl.SSLContext object at 0x7fdbb685b440>, tls_in_tls = False
server_hostname = 'sparc.biolucida.net'
def _ssl_wrap_socket_impl(sock, ssl_context, tls_in_tls, server_hostname=None):
if tls_in_tls:
if not SSLTransport:
# Import error, ssl is not available.
raise ProxySchemeUnsupported(
"TLS in TLS requires support for the 'ssl' module"
)
SSLTransport._validate_ssl_context_for_tls_in_tls(ssl_context)
return SSLTransport(sock, ssl_context, server_hostname)
if server_hostname:
> return ssl_context.wrap_socket(sock, server_hostname=server_hostname)
../../shiningpanda/jobs/c6a9534b/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/util/ssl_.py:472:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
self = <ssl.SSLContext object at 0x7fdbb685b440>
sock = <socket.socket [closed] fd=-1, family=AddressFamily.AF_INET, type=SocketKind.SOCK_STREAM, proto=6>
server_side = False, do_handshake_on_connect = True, suppress_ragged_eofs = True
server_hostname = 'sparc.biolucida.net', session = None
def wrap_socket(self, sock, server_side=False,
do_handshake_on_connect=True,
suppress_ragged_eofs=True,
server_hostname=None, session=None):
# SSLSocket class handles server_hostname encoding before it calls
# ctx._wrap_socket()
> return self.sslsocket_class._create(
sock=sock,
server_side=server_side,
do_handshake_on_connect=do_handshake_on_connect,
suppress_ragged_eofs=suppress_ragged_eofs,
server_hostname=server_hostname,
context=self,
session=session
)
/usr/lib/python3.9/ssl.py:501:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
cls = <class 'ssl.SSLSocket'>
sock = <socket.socket [closed] fd=-1, family=AddressFamily.AF_INET, type=SocketKind.SOCK_STREAM, proto=6>
server_side = False, do_handshake_on_connect = True, suppress_ragged_eofs = True
server_hostname = 'sparc.biolucida.net'
context = <ssl.SSLContext object at 0x7fdbb685b440>, session = None
@classmethod
def _create(cls, sock, server_side=False, do_handshake_on_connect=True,
suppress_ragged_eofs=True, server_hostname=None,
context=None, session=None):
if sock.getsockopt(SOL_SOCKET, SO_TYPE) != SOCK_STREAM:
raise NotImplementedError("only stream sockets are supported")
if server_side:
if server_hostname:
raise ValueError("server_hostname can only be specified "
"in client mode")
if session is not None:
raise ValueError("session can only be specified in "
"client mode")
if context.check_hostname and not server_hostname:
raise ValueError("check_hostname requires server_hostname")
kwargs = dict(
family=sock.family, type=sock.type, proto=sock.proto,
fileno=sock.fileno()
)
self = cls.__new__(cls, **kwargs)
super(SSLSocket, self).__init__(**kwargs)
sock_timeout = sock.gettimeout()
sock.detach()
self._context = context
self._session = session
self._closed = False
self._sslobj = None
self.server_side = server_side
self.server_hostname = context._encode_hostname(server_hostname)
self.do_handshake_on_connect = do_handshake_on_connect
self.suppress_ragged_eofs = suppress_ragged_eofs
# See if we are connected
try:
self.getpeername()
except OSError as e:
if e.errno != errno.ENOTCONN:
raise
connected = False
blocking = self.getblocking()
self.setblocking(False)
try:
# We are not connected so this is not supposed to block, but
# testing revealed otherwise on macOS and Windows so we do
# the non-blocking dance regardless. Our raise when any data
# is found means consuming the data is harmless.
notconn_pre_handshake_data = self.recv(1)
except OSError as e:
# EINVAL occurs for recv(1) on non-connected on unix sockets.
if e.errno not in (errno.ENOTCONN, errno.EINVAL):
raise
notconn_pre_handshake_data = b''
self.setblocking(blocking)
if notconn_pre_handshake_data:
# This prevents pending data sent to the socket before it was
# closed from escaping to the caller who could otherwise
# presume it came through a successful TLS connection.
reason = "Closed before TLS handshake with data in recv buffer."
notconn_pre_handshake_data_error = SSLError(e.errno, reason)
# Add the SSLError attributes that _ssl.c always adds.
notconn_pre_handshake_data_error.reason = reason
notconn_pre_handshake_data_error.library = None
try:
self.close()
except OSError:
pass
try:
raise notconn_pre_handshake_data_error
finally:
# Explicitly break the reference cycle.
notconn_pre_handshake_data_error = None
else:
connected = True
self.settimeout(sock_timeout) # Must come after setblocking() calls.
self._connected = connected
if connected:
# create the SSL object
try:
self._sslobj = self._context._wrap_socket(
self, server_side, self.server_hostname,
owner=self, session=self._session,
)
if do_handshake_on_connect:
timeout = self.gettimeout()
if timeout == 0.0:
# non-blocking
raise ValueError("do_handshake_on_connect should not be specified for non-blocking sockets")
> self.do_handshake()
/usr/lib/python3.9/ssl.py:1074:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
self = <ssl.SSLSocket [closed] fd=-1, family=AddressFamily.AF_INET, type=SocketKind.SOCK_STREAM, proto=6>
block = False
@_sslcopydoc
def do_handshake(self, block=False):
self._check_connected()
timeout = self.gettimeout()
try:
if timeout == 0.0 and block:
self.settimeout(None)
> self._sslobj.do_handshake()
E urllib3.exceptions.ProtocolError: ('Connection aborted.', ConnectionResetError(104, 'Connection reset by peer'))
/usr/lib/python3.9/ssl.py:1343: ProtocolError
During handling of the above exception, another exception occurred:
client = <FlaskClient <Flask 'app.main'>>
def test_neurolucida_thumbnail(client):
query_string = {'datasetId': 37, 'version': 3, 'path': 'files/derivative/sub-54-5/TJU_3Scan_ratheart54-5_updated_06_11_19_Fiducials.xml'}
> r = client.get('/thumbnail/neurolucida', query_string=query_string)
tests/test_thumbnails.py:20:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
../../shiningpanda/jobs/c6a9534b/virtualenvs/d41d8cd9/lib/python3.9/site-packages/werkzeug/test.py:1029: in get
return self.open(*args, **kw)
../../shiningpanda/jobs/c6a9534b/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/testing.py:222: in open
return Client.open(
../../shiningpanda/jobs/c6a9534b/virtualenvs/d41d8cd9/lib/python3.9/site-packages/werkzeug/test.py:993: in open
response = self.run_wsgi_app(environ.copy(), buffered=buffered)
../../shiningpanda/jobs/c6a9534b/virtualenvs/d41d8cd9/lib/python3.9/site-packages/werkzeug/test.py:884: in run_wsgi_app
rv = run_wsgi_app(self.application, environ, buffered=buffered)
../../shiningpanda/jobs/c6a9534b/virtualenvs/d41d8cd9/lib/python3.9/site-packages/werkzeug/test.py:1119: in run_wsgi_app
app_rv = app(environ, start_response)
../../shiningpanda/jobs/c6a9534b/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:2463: in __call__
return self.wsgi_app(environ, start_response)
../../shiningpanda/jobs/c6a9534b/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:2449: in wsgi_app
response = self.handle_exception(e)
../../shiningpanda/jobs/c6a9534b/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask_cors/extension.py:161: in wrapped_function
return cors_after_request(app.make_response(f(*args, **kwargs)))
../../shiningpanda/jobs/c6a9534b/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1866: in handle_exception
reraise(exc_type, exc_value, tb)
../../shiningpanda/jobs/c6a9534b/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/_compat.py:39: in reraise
raise value
../../shiningpanda/jobs/c6a9534b/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:2446: in wsgi_app
response = self.full_dispatch_request()
../../shiningpanda/jobs/c6a9534b/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1951: in full_dispatch_request
rv = self.handle_user_exception(e)
../../shiningpanda/jobs/c6a9534b/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask_cors/extension.py:161: in wrapped_function
return cors_after_request(app.make_response(f(*args, **kwargs)))
../../shiningpanda/jobs/c6a9534b/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1820: in handle_user_exception
reraise(exc_type, exc_value, tb)
../../shiningpanda/jobs/c6a9534b/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/_compat.py:39: in reraise
raise value
../../shiningpanda/jobs/c6a9534b/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1949: in full_dispatch_request
rv = self.dispatch_request()
../../shiningpanda/jobs/c6a9534b/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1935: in dispatch_request
return self.view_functions[rule.endpoint](**req.view_args)
app/main.py:306: in thumbnail_from_neurolucida_file
response = requests.get(url, params=query_args)
../../shiningpanda/jobs/c6a9534b/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/api.py:76: in get
return request('get', url, params=params, **kwargs)
../../shiningpanda/jobs/c6a9534b/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/api.py:61: in request
return session.request(method=method, url=url, **kwargs)
../../shiningpanda/jobs/c6a9534b/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/sessions.py:542: in request
resp = self.send(prep, **send_kwargs)
../../shiningpanda/jobs/c6a9534b/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/sessions.py:655: in send
r = adapter.send(request, **kwargs)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
self = <requests.adapters.HTTPAdapter object at 0x7fdbb6ac3bb0>
request = <PreparedRequest [GET]>, stream = False
timeout = Timeout(connect=None, read=None, total=None), verify = True
cert = None, proxies = OrderedDict()
def send(self, request, stream=False, timeout=None, verify=True, cert=None, proxies=None):
"""Sends PreparedRequest object. Returns Response object.
:param request: The :class:`PreparedRequest <PreparedRequest>` being sent.
:param stream: (optional) Whether to stream the request content.
:param timeout: (optional) How long to wait for the server to send
data before giving up, as a float, or a :ref:`(connect timeout,
read timeout) <timeouts>` tuple.
:type timeout: float or tuple or urllib3 Timeout object
:param verify: (optional) Either a boolean, in which case it controls whether
we verify the server's TLS certificate, or a string, in which case it
must be a path to a CA bundle to use
:param cert: (optional) Any user-provided SSL certificate to be trusted.
:param proxies: (optional) The proxies dictionary to apply to the request.
:rtype: requests.Response
"""
try:
conn = self.get_connection(request.url, proxies)
except LocationValueError as e:
raise InvalidURL(e, request=request)
self.cert_verify(conn, request.url, verify, cert)
url = self.request_url(request, proxies)
self.add_headers(request, stream=stream, timeout=timeout, verify=verify, cert=cert, proxies=proxies)
chunked = not (request.body is None or 'Content-Length' in request.headers)
if isinstance(timeout, tuple):
try:
connect, read = timeout
timeout = TimeoutSauce(connect=connect, read=read)
except ValueError as e:
# this may raise a string formatting error.
err = ("Invalid timeout {}. Pass a (connect, read) "
"timeout tuple, or a single float to set "
"both timeouts to the same value".format(timeout))
raise ValueError(err)
elif isinstance(timeout, TimeoutSauce):
pass
else:
timeout = TimeoutSauce(connect=timeout, read=timeout)
try:
if not chunked:
resp = conn.urlopen(
method=request.method,
url=url,
body=request.body,
headers=request.headers,
redirect=False,
assert_same_host=False,
preload_content=False,
decode_content=False,
retries=self.max_retries,
timeout=timeout
)
# Send the request.
else:
if hasattr(conn, 'proxy_pool'):
conn = conn.proxy_pool
low_conn = conn._get_conn(timeout=DEFAULT_POOL_TIMEOUT)
try:
low_conn.putrequest(request.method,
url,
skip_accept_encoding=True)
for header, value in request.headers.items():
low_conn.putheader(header, value)
low_conn.endheaders()
for i in request.body:
low_conn.send(hex(len(i))[2:].encode('utf-8'))
low_conn.send(b'\r\n')
low_conn.send(i)
low_conn.send(b'\r\n')
low_conn.send(b'0\r\n\r\n')
# Receive the response from the server
try:
# For Python 2.7, use buffering of HTTP responses
r = low_conn.getresponse(buffering=True)
except TypeError:
# For compatibility with Python 3.3+
r = low_conn.getresponse()
resp = HTTPResponse.from_httplib(
r,
pool=conn,
connection=low_conn,
preload_content=False,
decode_content=False
)
except:
# If we hit any problems here, clean up the connection.
# Then, reraise so that we can handle the actual exception.
low_conn.close()
raise
except (ProtocolError, socket.error) as err:
> raise ConnectionError(err, request=request)
E requests.exceptions.ConnectionError: ('Connection aborted.', ConnectionResetError(104, 'Connection reset by peer'))
../../shiningpanda/jobs/c6a9534b/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/adapters.py:498: ConnectionError
____________________ test_neurolucida_thumbnail_dataset_221 ____________________
self = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7fdbb4852100>
method = 'GET'
url = '/thumbnail?datasetId=221&version=3&path=files%2Fderivative%2Fsub-M168%2Fdigital-traces%2FpCm168_AAV_Z_20x_191211_S3B_lx_IGS.xml'
body = None
headers = {'User-Agent': 'python-requests/2.25.1', 'Accept-Encoding': 'gzip, deflate', 'Accept': '*/*', 'Connection': 'keep-alive'}
retries = Retry(total=0, connect=None, read=False, redirect=None, status=None)
redirect = False, assert_same_host = False
timeout = Timeout(connect=None, read=None, total=None), pool_timeout = None
release_conn = False, chunked = False, body_pos = None
response_kw = {'decode_content': False, 'preload_content': False}
parsed_url = Url(scheme=None, auth=None, host=None, port=None, path='/thumbnail', query='datasetId=221&version=3&path=files%2Fderivative%2Fsub-M168%2Fdigital-traces%2FpCm168_AAV_Z_20x_191211_S3B_lx_IGS.xml', fragment=None)
destination_scheme = None, conn = None, release_this_conn = True
http_tunnel_required = False, err = None, clean_exit = False
def urlopen(
self,
method,
url,
body=None,
headers=None,
retries=None,
redirect=True,
assert_same_host=True,
timeout=_Default,
pool_timeout=None,
release_conn=None,
chunked=False,
body_pos=None,
**response_kw
):
"""
Get a connection from the pool and perform an HTTP request. This is the
lowest level call for making a request, so you'll need to specify all
the raw details.
.. note::
More commonly, it's appropriate to use a convenience method provided
by :class:`.RequestMethods`, such as :meth:`request`.
.. note::
`release_conn` will only behave as expected if
`preload_content=False` because we want to make
`preload_content=False` the default behaviour someday soon without
breaking backwards compatibility.
:param method:
HTTP request method (such as GET, POST, PUT, etc.)
:param url:
The URL to perform the request on.
:param body:
Data to send in the request body, either :class:`str`, :class:`bytes`,
an iterable of :class:`str`/:class:`bytes`, or a file-like object.
:param headers:
Dictionary of custom headers to send, such as User-Agent,
If-None-Match, etc. If None, pool headers are used. If provided,
these headers completely replace any pool-specific headers.
:param retries:
Configure the number of retries to allow before raising a
:class:`~urllib3.exceptions.MaxRetryError` exception.
Pass ``None`` to retry until you receive a response. Pass a
:class:`~urllib3.util.retry.Retry` object for fine-grained control
over different types of retries.
Pass an integer number to retry connection errors that many times,
but no other types of errors. Pass zero to never retry.
If ``False``, then retries are disabled and any exception is raised
immediately. Also, instead of raising a MaxRetryError on redirects,
the redirect response will be returned.
:type retries: :class:`~urllib3.util.retry.Retry`, False, or an int.
:param redirect:
If True, automatically handle redirects (status codes 301, 302,
303, 307, 308). Each redirect counts as a retry. Disabling retries
will disable redirect, too.
:param assert_same_host:
If ``True``, will make sure that the host of the pool requests is
consistent else will raise HostChangedError. When ``False``, you can
use the pool on an HTTP proxy and request foreign hosts.
:param timeout:
If specified, overrides the default timeout for this one
request. It may be a float (in seconds) or an instance of
:class:`urllib3.util.Timeout`.
:param pool_timeout:
If set and the pool is set to block=True, then this method will
block for ``pool_timeout`` seconds and raise EmptyPoolError if no
connection is available within the time period.
:param release_conn:
If False, then the urlopen call will not release the connection
back into the pool once a response is received (but will release if
you read the entire contents of the response such as when
`preload_content=True`). This is useful if you're not preloading
the response's content immediately. You will need to call
``r.release_conn()`` on the response ``r`` to return the connection
back into the pool. If None, it takes the value of
``response_kw.get('preload_content', True)``.
:param chunked:
If True, urllib3 will send the body using chunked transfer
encoding. Otherwise, urllib3 will send the body using the standard
content-length form. Defaults to False.
:param int body_pos:
Position to seek to in file-like body in the event of a retry or
redirect. Typically this won't need to be set because urllib3 will
auto-populate the value when needed.
:param \\**response_kw:
Additional parameters are passed to
:meth:`urllib3.response.HTTPResponse.from_httplib`
"""
parsed_url = parse_url(url)
destination_scheme = parsed_url.scheme
if headers is None:
headers = self.headers
if not isinstance(retries, Retry):
retries = Retry.from_int(retries, redirect=redirect, default=self.retries)
if release_conn is None:
release_conn = response_kw.get("preload_content", True)
# Check host
if assert_same_host and not self.is_same_host(url):
raise HostChangedError(self, url, retries)
# Ensure that the URL we're connecting to is properly encoded
if url.startswith("/"):
url = six.ensure_str(_encode_target(url))
else:
url = six.ensure_str(parsed_url.url)
conn = None
# Track whether `conn` needs to be released before
# returning/raising/recursing. Update this variable if necessary, and
# leave `release_conn` constant throughout the function. That way, if
# the function recurses, the original value of `release_conn` will be
# passed down into the recursive call, and its value will be respected.
#
# See issue #651 [1] for details.
#
# [1] <https://github.com/urllib3/urllib3/issues/651>
release_this_conn = release_conn
http_tunnel_required = connection_requires_http_tunnel(
self.proxy, self.proxy_config, destination_scheme
)
# Merge the proxy headers. Only done when not using HTTP CONNECT. We
# have to copy the headers dict so we can safely change it without those
# changes being reflected in anyone else's copy.
if not http_tunnel_required:
headers = headers.copy()
headers.update(self.proxy_headers)
# Must keep the exception bound to a separate variable or else Python 3
# complains about UnboundLocalError.
err = None
# Keep track of whether we cleanly exited the except block. This
# ensures we do proper cleanup in finally.
clean_exit = False
# Rewind body position, if needed. Record current position
# for future rewinds in the event of a redirect/retry.
body_pos = set_file_position(body, body_pos)
try:
# Request a connection from the queue.
timeout_obj = self._get_timeout(timeout)
conn = self._get_conn(timeout=pool_timeout)
conn.timeout = timeout_obj.connect_timeout
is_new_proxy_conn = self.proxy is not None and not getattr(
conn, "sock", None
)
if is_new_proxy_conn and http_tunnel_required:
self._prepare_proxy(conn)
# Make the request on the httplib connection object.
> httplib_response = self._make_request(
conn,
method,
url,
timeout=timeout_obj,
body=body,
headers=headers,
chunked=chunked,
)
../../shiningpanda/jobs/c6a9534b/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py:699:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
self = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7fdbb4852100>
conn = <urllib3.connection.HTTPSConnection object at 0x7fdbb5b47ee0>
method = 'GET'
url = '/thumbnail?datasetId=221&version=3&path=files%2Fderivative%2Fsub-M168%2Fdigital-traces%2FpCm168_AAV_Z_20x_191211_S3B_lx_IGS.xml'
timeout = Timeout(connect=None, read=None, total=None), chunked = False
httplib_request_kw = {'body': None, 'headers': {'User-Agent': 'python-requests/2.25.1', 'Accept-Encoding': 'gzip, deflate', 'Accept': '*/*', 'Connection': 'keep-alive'}}
timeout_obj = Timeout(connect=None, read=None, total=None)
def _make_request(
self, conn, method, url, timeout=_Default, chunked=False, **httplib_request_kw
):
"""
Perform a request on a given urllib connection object taken from our
pool.
:param conn:
a connection from one of our connection pools
:param timeout:
Socket timeout in seconds for the request. This can be a
float or integer, which will set the same timeout value for
the socket connect and the socket read, or an instance of
:class:`urllib3.util.Timeout`, which gives you more fine-grained
control over your timeouts.
"""
self.num_requests += 1
timeout_obj = self._get_timeout(timeout)
timeout_obj.start_connect()
conn.timeout = timeout_obj.connect_timeout
# Trigger any extra validation we need to do.
try:
> self._validate_conn(conn)
../../shiningpanda/jobs/c6a9534b/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py:382:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
self = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7fdbb4852100>
conn = <urllib3.connection.HTTPSConnection object at 0x7fdbb5b47ee0>
def _validate_conn(self, conn):
"""
Called right before a request is made, after the socket is created.
"""
super(HTTPSConnectionPool, self)._validate_conn(conn)
# Force connect early to allow us to validate the connection.
if not getattr(conn, "sock", None): # AppEngine might not have `.sock`
> conn.connect()
../../shiningpanda/jobs/c6a9534b/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py:1010:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
self = <urllib3.connection.HTTPSConnection object at 0x7fdbb5b47ee0>
def connect(self):
# Add certificate verification
conn = self._new_conn()
hostname = self.host
tls_in_tls = False
if self._is_using_tunnel():
if self.tls_in_tls_required:
conn = self._connect_tls_proxy(hostname, conn)
tls_in_tls = True
self.sock = conn
# Calls self._set_hostport(), so self.host is
# self._tunnel_host below.
self._tunnel()
# Mark this connection as not reusable
self.auto_open = 0
# Override the host with the one we're requesting data from.
hostname = self._tunnel_host
server_hostname = hostname
if self.server_hostname is not None:
server_hostname = self.server_hostname
is_time_off = datetime.date.today() < RECENT_DATE
if is_time_off:
warnings.warn(
(
"System time is way off (before {0}). This will probably "
"lead to SSL verification errors"
).format(RECENT_DATE),
SystemTimeWarning,
)
# Wrap socket using verification with the root certs in
# trusted_root_certs
default_ssl_context = False
if self.ssl_context is None:
default_ssl_context = True
self.ssl_context = create_urllib3_context(
ssl_version=resolve_ssl_version(self.ssl_version),
cert_reqs=resolve_cert_reqs(self.cert_reqs),
)
context = self.ssl_context
context.verify_mode = resolve_cert_reqs(self.cert_reqs)
# Try to load OS default certs if none are given.
# Works well on Windows (requires Python3.4+)
if (
not self.ca_certs
and not self.ca_cert_dir
and not self.ca_cert_data
and default_ssl_context
and hasattr(context, "load_default_certs")
):
context.load_default_certs()
> self.sock = ssl_wrap_socket(
sock=conn,
keyfile=self.key_file,
certfile=self.cert_file,
key_password=self.key_password,
ca_certs=self.ca_certs,
ca_cert_dir=self.ca_cert_dir,
ca_cert_data=self.ca_cert_data,
server_hostname=server_hostname,
ssl_context=context,
tls_in_tls=tls_in_tls,
)
../../shiningpanda/jobs/c6a9534b/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connection.py:411:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
sock = <socket.socket [closed] fd=-1, family=AddressFamily.AF_INET, type=SocketKind.SOCK_STREAM, proto=6>
keyfile = None, certfile = None, cert_reqs = None
ca_certs = '/home/cmiss/Jenkins/shiningpanda/jobs/c6a9534b/virtualenvs/d41d8cd9/lib/python3.9/site-packages/certifi/cacert.pem'
server_hostname = 'sparc.biolucida.net', ssl_version = None, ciphers = None
ssl_context = <ssl.SSLContext object at 0x7fdbb4d06a40>, ca_cert_dir = None
key_password = None, ca_cert_data = None, tls_in_tls = False
def ssl_wrap_socket(
sock,
keyfile=None,
certfile=None,
cert_reqs=None,
ca_certs=None,
server_hostname=None,
ssl_version=None,
ciphers=None,
ssl_context=None,
ca_cert_dir=None,
key_password=None,
ca_cert_data=None,
tls_in_tls=False,
):
"""
All arguments except for server_hostname, ssl_context, and ca_cert_dir have
the same meaning as they do when using :func:`ssl.wrap_socket`.
:param server_hostname:
When SNI is supported, the expected hostname of the certificate
:param ssl_context:
A pre-made :class:`SSLContext` object. If none is provided, one will
be created using :func:`create_urllib3_context`.
:param ciphers:
A string of ciphers we wish the client to support.
:param ca_cert_dir:
A directory containing CA certificates in multiple separate files, as
supported by OpenSSL's -CApath flag or the capath argument to
SSLContext.load_verify_locations().
:param key_password:
Optional password if the keyfile is encrypted.
:param ca_cert_data:
Optional string containing CA certificates in PEM format suitable for
passing as the cadata parameter to SSLContext.load_verify_locations()
:param tls_in_tls:
Use SSLTransport to wrap the existing socket.
"""
context = ssl_context
if context is None:
# Note: This branch of code and all the variables in it are no longer
# used by urllib3 itself. We should consider deprecating and removing
# this code.
context = create_urllib3_context(ssl_version, cert_reqs, ciphers=ciphers)
if ca_certs or ca_cert_dir or ca_cert_data:
try:
context.load_verify_locations(ca_certs, ca_cert_dir, ca_cert_data)
except (IOError, OSError) as e:
raise SSLError(e)
elif ssl_context is None and hasattr(context, "load_default_certs"):
# try to load OS default certs; works well on Windows (require Python3.4+)
context.load_default_certs()
# Attempt to detect if we get the goofy behavior of the
# keyfile being encrypted and OpenSSL asking for the
# passphrase via the terminal and instead error out.
if keyfile and key_password is None and _is_key_file_encrypted(keyfile):
raise SSLError("Client private key is encrypted, password is required")
if certfile:
if key_password is None:
context.load_cert_chain(certfile, keyfile)
else:
context.load_cert_chain(certfile, keyfile, key_password)
try:
if hasattr(context, "set_alpn_protocols"):
context.set_alpn_protocols(ALPN_PROTOCOLS)
except NotImplementedError:
pass
# If we detect server_hostname is an IP address then the SNI
# extension should not be used according to RFC3546 Section 3.1
use_sni_hostname = server_hostname and not is_ipaddress(server_hostname)
# SecureTransport uses server_hostname in certificate verification.
send_sni = (use_sni_hostname and HAS_SNI) or (
IS_SECURETRANSPORT and server_hostname
)
# Do not warn the user if server_hostname is an invalid SNI hostname.
if not HAS_SNI and use_sni_hostname:
warnings.warn(
"An HTTPS request has been made, but the SNI (Server Name "
"Indication) extension to TLS is not available on this platform. "
"This may cause the server to present an incorrect TLS "
"certificate, which can cause validation failures. You can upgrade to "
"a newer version of Python to solve this. For more information, see "
"https://urllib3.readthedocs.io/en/latest/advanced-usage.html"
"#ssl-warnings",
SNIMissingWarning,
)
if send_sni:
> ssl_sock = _ssl_wrap_socket_impl(
sock, context, tls_in_tls, server_hostname=server_hostname
)
../../shiningpanda/jobs/c6a9534b/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/util/ssl_.py:428:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
sock = <socket.socket [closed] fd=-1, family=AddressFamily.AF_INET, type=SocketKind.SOCK_STREAM, proto=6>
ssl_context = <ssl.SSLContext object at 0x7fdbb4d06a40>, tls_in_tls = False
server_hostname = 'sparc.biolucida.net'
def _ssl_wrap_socket_impl(sock, ssl_context, tls_in_tls, server_hostname=None):
if tls_in_tls:
if not SSLTransport:
# Import error, ssl is not available.
raise ProxySchemeUnsupported(
"TLS in TLS requires support for the 'ssl' module"
)
SSLTransport._validate_ssl_context_for_tls_in_tls(ssl_context)
return SSLTransport(sock, ssl_context, server_hostname)
if server_hostname:
> return ssl_context.wrap_socket(sock, server_hostname=server_hostname)
../../shiningpanda/jobs/c6a9534b/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/util/ssl_.py:472:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
self = <ssl.SSLContext object at 0x7fdbb4d06a40>
sock = <socket.socket [closed] fd=-1, family=AddressFamily.AF_INET, type=SocketKind.SOCK_STREAM, proto=6>
server_side = False, do_handshake_on_connect = True, suppress_ragged_eofs = True
server_hostname = 'sparc.biolucida.net', session = None
def wrap_socket(self, sock, server_side=False,
do_handshake_on_connect=True,
suppress_ragged_eofs=True,
server_hostname=None, session=None):
# SSLSocket class handles server_hostname encoding before it calls
# ctx._wrap_socket()
> return self.sslsocket_class._create(
sock=sock,
server_side=server_side,
do_handshake_on_connect=do_handshake_on_connect,
suppress_ragged_eofs=suppress_ragged_eofs,
server_hostname=server_hostname,
context=self,
session=session
)
/usr/lib/python3.9/ssl.py:501:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
cls = <class 'ssl.SSLSocket'>
sock = <socket.socket [closed] fd=-1, family=AddressFamily.AF_INET, type=SocketKind.SOCK_STREAM, proto=6>
server_side = False, do_handshake_on_connect = True, suppress_ragged_eofs = True
server_hostname = 'sparc.biolucida.net'
context = <ssl.SSLContext object at 0x7fdbb4d06a40>, session = None
@classmethod
def _create(cls, sock, server_side=False, do_handshake_on_connect=True,
suppress_ragged_eofs=True, server_hostname=None,
context=None, session=None):
if sock.getsockopt(SOL_SOCKET, SO_TYPE) != SOCK_STREAM:
raise NotImplementedError("only stream sockets are supported")
if server_side:
if server_hostname:
raise ValueError("server_hostname can only be specified "
"in client mode")
if session is not None:
raise ValueError("session can only be specified in "
"client mode")
if context.check_hostname and not server_hostname:
raise ValueError("check_hostname requires server_hostname")
kwargs = dict(
family=sock.family, type=sock.type, proto=sock.proto,
fileno=sock.fileno()
)
self = cls.__new__(cls, **kwargs)
super(SSLSocket, self).__init__(**kwargs)
sock_timeout = sock.gettimeout()
sock.detach()
self._context = context
self._session = session
self._closed = False
self._sslobj = None
self.server_side = server_side
self.server_hostname = context._encode_hostname(server_hostname)
self.do_handshake_on_connect = do_handshake_on_connect
self.suppress_ragged_eofs = suppress_ragged_eofs
# See if we are connected
try:
self.getpeername()
except OSError as e:
if e.errno != errno.ENOTCONN:
raise
connected = False
blocking = self.getblocking()
self.setblocking(False)
try:
# We are not connected so this is not supposed to block, but
# testing revealed otherwise on macOS and Windows so we do
# the non-blocking dance regardless. Our raise when any data
# is found means consuming the data is harmless.
notconn_pre_handshake_data = self.recv(1)
except OSError as e:
# EINVAL occurs for recv(1) on non-connected on unix sockets.
if e.errno not in (errno.ENOTCONN, errno.EINVAL):
raise
notconn_pre_handshake_data = b''
self.setblocking(blocking)
if notconn_pre_handshake_data:
# This prevents pending data sent to the socket before it was
# closed from escaping to the caller who could otherwise
# presume it came through a successful TLS connection.
reason = "Closed before TLS handshake with data in recv buffer."
notconn_pre_handshake_data_error = SSLError(e.errno, reason)
# Add the SSLError attributes that _ssl.c always adds.
notconn_pre_handshake_data_error.reason = reason
notconn_pre_handshake_data_error.library = None
try:
self.close()
except OSError:
pass
try:
raise notconn_pre_handshake_data_error
finally:
# Explicitly break the reference cycle.
notconn_pre_handshake_data_error = None
else:
connected = True
self.settimeout(sock_timeout) # Must come after setblocking() calls.
self._connected = connected
if connected:
# create the SSL object
try:
self._sslobj = self._context._wrap_socket(
self, server_side, self.server_hostname,
owner=self, session=self._session,
)
if do_handshake_on_connect:
timeout = self.gettimeout()
if timeout == 0.0:
# non-blocking
raise ValueError("do_handshake_on_connect should not be specified for non-blocking sockets")
> self.do_handshake()
/usr/lib/python3.9/ssl.py:1074:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
self = <ssl.SSLSocket [closed] fd=-1, family=AddressFamily.AF_INET, type=SocketKind.SOCK_STREAM, proto=6>
block = False
@_sslcopydoc
def do_handshake(self, block=False):
self._check_connected()
timeout = self.gettimeout()
try:
if timeout == 0.0 and block:
self.settimeout(None)
> self._sslobj.do_handshake()
E ConnectionResetError: [Errno 104] Connection reset by peer
/usr/lib/python3.9/ssl.py:1343: ConnectionResetError
During handling of the above exception, another exception occurred:
self = <requests.adapters.HTTPAdapter object at 0x7fdbb48524c0>
request = <PreparedRequest [GET]>, stream = False
timeout = Timeout(connect=None, read=None, total=None), verify = True
cert = None, proxies = OrderedDict()
def send(self, request, stream=False, timeout=None, verify=True, cert=None, proxies=None):
"""Sends PreparedRequest object. Returns Response object.
:param request: The :class:`PreparedRequest <PreparedRequest>` being sent.
:param stream: (optional) Whether to stream the request content.
:param timeout: (optional) How long to wait for the server to send
data before giving up, as a float, or a :ref:`(connect timeout,
read timeout) <timeouts>` tuple.
:type timeout: float or tuple or urllib3 Timeout object
:param verify: (optional) Either a boolean, in which case it controls whether
we verify the server's TLS certificate, or a string, in which case it
must be a path to a CA bundle to use
:param cert: (optional) Any user-provided SSL certificate to be trusted.
:param proxies: (optional) The proxies dictionary to apply to the request.
:rtype: requests.Response
"""
try:
conn = self.get_connection(request.url, proxies)
except LocationValueError as e:
raise InvalidURL(e, request=request)
self.cert_verify(conn, request.url, verify, cert)
url = self.request_url(request, proxies)
self.add_headers(request, stream=stream, timeout=timeout, verify=verify, cert=cert, proxies=proxies)
chunked = not (request.body is None or 'Content-Length' in request.headers)
if isinstance(timeout, tuple):
try:
connect, read = timeout
timeout = TimeoutSauce(connect=connect, read=read)
except ValueError as e:
# this may raise a string formatting error.
err = ("Invalid timeout {}. Pass a (connect, read) "
"timeout tuple, or a single float to set "
"both timeouts to the same value".format(timeout))
raise ValueError(err)
elif isinstance(timeout, TimeoutSauce):
pass
else:
timeout = TimeoutSauce(connect=timeout, read=timeout)
try:
if not chunked:
> resp = conn.urlopen(
method=request.method,
url=url,
body=request.body,
headers=request.headers,
redirect=False,
assert_same_host=False,
preload_content=False,
decode_content=False,
retries=self.max_retries,
timeout=timeout
)
../../shiningpanda/jobs/c6a9534b/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/adapters.py:439:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
self = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7fdbb4852100>
method = 'GET'
url = '/thumbnail?datasetId=221&version=3&path=files%2Fderivative%2Fsub-M168%2Fdigital-traces%2FpCm168_AAV_Z_20x_191211_S3B_lx_IGS.xml'
body = None
headers = {'User-Agent': 'python-requests/2.25.1', 'Accept-Encoding': 'gzip, deflate', 'Accept': '*/*', 'Connection': 'keep-alive'}
retries = Retry(total=0, connect=None, read=False, redirect=None, status=None)
redirect = False, assert_same_host = False
timeout = Timeout(connect=None, read=None, total=None), pool_timeout = None
release_conn = False, chunked = False, body_pos = None
response_kw = {'decode_content': False, 'preload_content': False}
parsed_url = Url(scheme=None, auth=None, host=None, port=None, path='/thumbnail', query='datasetId=221&version=3&path=files%2Fderivative%2Fsub-M168%2Fdigital-traces%2FpCm168_AAV_Z_20x_191211_S3B_lx_IGS.xml', fragment=None)
destination_scheme = None, conn = None, release_this_conn = True
http_tunnel_required = False, err = None, clean_exit = False
def urlopen(
self,
method,
url,
body=None,
headers=None,
retries=None,
redirect=True,
assert_same_host=True,
timeout=_Default,
pool_timeout=None,
release_conn=None,
chunked=False,
body_pos=None,
**response_kw
):
"""
Get a connection from the pool and perform an HTTP request. This is the
lowest level call for making a request, so you'll need to specify all
the raw details.
.. note::
More commonly, it's appropriate to use a convenience method provided
by :class:`.RequestMethods`, such as :meth:`request`.
.. note::
`release_conn` will only behave as expected if
`preload_content=False` because we want to make
`preload_content=False` the default behaviour someday soon without
breaking backwards compatibility.
:param method:
HTTP request method (such as GET, POST, PUT, etc.)
:param url:
The URL to perform the request on.
:param body:
Data to send in the request body, either :class:`str`, :class:`bytes`,
an iterable of :class:`str`/:class:`bytes`, or a file-like object.
:param headers:
Dictionary of custom headers to send, such as User-Agent,
If-None-Match, etc. If None, pool headers are used. If provided,
these headers completely replace any pool-specific headers.
:param retries:
Configure the number of retries to allow before raising a
:class:`~urllib3.exceptions.MaxRetryError` exception.
Pass ``None`` to retry until you receive a response. Pass a
:class:`~urllib3.util.retry.Retry` object for fine-grained control
over different types of retries.
Pass an integer number to retry connection errors that many times,
but no other types of errors. Pass zero to never retry.
If ``False``, then retries are disabled and any exception is raised
immediately. Also, instead of raising a MaxRetryError on redirects,
the redirect response will be returned.
:type retries: :class:`~urllib3.util.retry.Retry`, False, or an int.
:param redirect:
If True, automatically handle redirects (status codes 301, 302,
303, 307, 308). Each redirect counts as a retry. Disabling retries
will disable redirect, too.
:param assert_same_host:
If ``True``, will make sure that the host of the pool requests is
consistent else will raise HostChangedError. When ``False``, you can
use the pool on an HTTP proxy and request foreign hosts.
:param timeout:
If specified, overrides the default timeout for this one
request. It may be a float (in seconds) or an instance of
:class:`urllib3.util.Timeout`.
:param pool_timeout:
If set and the pool is set to block=True, then this method will
block for ``pool_timeout`` seconds and raise EmptyPoolError if no
connection is available within the time period.
:param release_conn:
If False, then the urlopen call will not release the connection
back into the pool once a response is received (but will release if
you read the entire contents of the response such as when
`preload_content=True`). This is useful if you're not preloading
the response's content immediately. You will need to call
``r.release_conn()`` on the response ``r`` to return the connection
back into the pool. If None, it takes the value of
``response_kw.get('preload_content', True)``.
:param chunked:
If True, urllib3 will send the body using chunked transfer
encoding. Otherwise, urllib3 will send the body using the standard
content-length form. Defaults to False.
:param int body_pos:
Position to seek to in file-like body in the event of a retry or
redirect. Typically this won't need to be set because urllib3 will
auto-populate the value when needed.
:param \\**response_kw:
Additional parameters are passed to
:meth:`urllib3.response.HTTPResponse.from_httplib`
"""
parsed_url = parse_url(url)
destination_scheme = parsed_url.scheme
if headers is None:
headers = self.headers
if not isinstance(retries, Retry):
retries = Retry.from_int(retries, redirect=redirect, default=self.retries)
if release_conn is None:
release_conn = response_kw.get("preload_content", True)
# Check host
if assert_same_host and not self.is_same_host(url):
raise HostChangedError(self, url, retries)
# Ensure that the URL we're connecting to is properly encoded
if url.startswith("/"):
url = six.ensure_str(_encode_target(url))
else:
url = six.ensure_str(parsed_url.url)
conn = None
# Track whether `conn` needs to be released before
# returning/raising/recursing. Update this variable if necessary, and
# leave `release_conn` constant throughout the function. That way, if
# the function recurses, the original value of `release_conn` will be
# passed down into the recursive call, and its value will be respected.
#
# See issue #651 [1] for details.
#
# [1] <https://github.com/urllib3/urllib3/issues/651>
release_this_conn = release_conn
http_tunnel_required = connection_requires_http_tunnel(
self.proxy, self.proxy_config, destination_scheme
)
# Merge the proxy headers. Only done when not using HTTP CONNECT. We
# have to copy the headers dict so we can safely change it without those
# changes being reflected in anyone else's copy.
if not http_tunnel_required:
headers = headers.copy()
headers.update(self.proxy_headers)
# Must keep the exception bound to a separate variable or else Python 3
# complains about UnboundLocalError.
err = None
# Keep track of whether we cleanly exited the except block. This
# ensures we do proper cleanup in finally.
clean_exit = False
# Rewind body position, if needed. Record current position
# for future rewinds in the event of a redirect/retry.
body_pos = set_file_position(body, body_pos)
try:
# Request a connection from the queue.
timeout_obj = self._get_timeout(timeout)
conn = self._get_conn(timeout=pool_timeout)
conn.timeout = timeout_obj.connect_timeout
is_new_proxy_conn = self.proxy is not None and not getattr(
conn, "sock", None
)
if is_new_proxy_conn and http_tunnel_required:
self._prepare_proxy(conn)
# Make the request on the httplib connection object.
httplib_response = self._make_request(
conn,
method,
url,
timeout=timeout_obj,
body=body,
headers=headers,
chunked=chunked,
)
# If we're going to release the connection in ``finally:``, then
# the response doesn't need to know about the connection. Otherwise
# it will also try to release it and we'll have a double-release
# mess.
response_conn = conn if not release_conn else None
# Pass method to Response for length checking
response_kw["request_method"] = method
# Import httplib's response into our own wrapper object
response = self.ResponseCls.from_httplib(
httplib_response,
pool=self,
connection=response_conn,
retries=retries,
**response_kw
)
# Everything went great!
clean_exit = True
except EmptyPoolError:
# Didn't get a connection from the pool, no need to clean up
clean_exit = True
release_this_conn = False
raise
except (
TimeoutError,
HTTPException,
SocketError,
ProtocolError,
BaseSSLError,
SSLError,
CertificateError,
) as e:
# Discard the connection for these exceptions. It will be
# replaced during the next _get_conn() call.
clean_exit = False
if isinstance(e, (BaseSSLError, CertificateError)):
e = SSLError(e)
elif isinstance(e, (SocketError, NewConnectionError)) and self.proxy:
e = ProxyError("Cannot connect to proxy.", e)
elif isinstance(e, (SocketError, HTTPException)):
e = ProtocolError("Connection aborted.", e)
> retries = retries.increment(
method, url, error=e, _pool=self, _stacktrace=sys.exc_info()[2]
)
../../shiningpanda/jobs/c6a9534b/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py:755:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
self = Retry(total=0, connect=None, read=False, redirect=None, status=None)
method = 'GET'
url = '/thumbnail?datasetId=221&version=3&path=files%2Fderivative%2Fsub-M168%2Fdigital-traces%2FpCm168_AAV_Z_20x_191211_S3B_lx_IGS.xml'
response = None
error = ProtocolError('Connection aborted.', ConnectionResetError(104, 'Connection reset by peer'))
_pool = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7fdbb4852100>
_stacktrace = <traceback object at 0x7fdbb55ca500>
def increment(
self,
method=None,
url=None,
response=None,
error=None,
_pool=None,
_stacktrace=None,
):
"""Return a new Retry object with incremented retry counters.
:param response: A response object, or None, if the server did not
return a response.
:type response: :class:`~urllib3.response.HTTPResponse`
:param Exception error: An error encountered during the request, or
None if the response was received successfully.
:return: A new ``Retry`` object.
"""
if self.total is False and error:
# Disabled, indicate to re-raise the error.
raise six.reraise(type(error), error, _stacktrace)
total = self.total
if total is not None:
total -= 1
connect = self.connect
read = self.read
redirect = self.redirect
status_count = self.status
other = self.other
cause = "unknown"
status = None
redirect_location = None
if error and self._is_connection_error(error):
# Connect retry?
if connect is False:
raise six.reraise(type(error), error, _stacktrace)
elif connect is not None:
connect -= 1
elif error and self._is_read_error(error):
# Read retry?
if read is False or not self._is_method_retryable(method):
> raise six.reraise(type(error), error, _stacktrace)
../../shiningpanda/jobs/c6a9534b/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/util/retry.py:532:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
tp = <class 'urllib3.exceptions.ProtocolError'>, value = None, tb = None
def reraise(tp, value, tb=None):
try:
if value is None:
value = tp()
if value.__traceback__ is not tb:
> raise value.with_traceback(tb)
../../shiningpanda/jobs/c6a9534b/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/packages/six.py:734:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
self = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7fdbb4852100>
method = 'GET'
url = '/thumbnail?datasetId=221&version=3&path=files%2Fderivative%2Fsub-M168%2Fdigital-traces%2FpCm168_AAV_Z_20x_191211_S3B_lx_IGS.xml'
body = None
headers = {'User-Agent': 'python-requests/2.25.1', 'Accept-Encoding': 'gzip, deflate', 'Accept': '*/*', 'Connection': 'keep-alive'}
retries = Retry(total=0, connect=None, read=False, redirect=None, status=None)
redirect = False, assert_same_host = False
timeout = Timeout(connect=None, read=None, total=None), pool_timeout = None
release_conn = False, chunked = False, body_pos = None
response_kw = {'decode_content': False, 'preload_content': False}
parsed_url = Url(scheme=None, auth=None, host=None, port=None, path='/thumbnail', query='datasetId=221&version=3&path=files%2Fderivative%2Fsub-M168%2Fdigital-traces%2FpCm168_AAV_Z_20x_191211_S3B_lx_IGS.xml', fragment=None)
destination_scheme = None, conn = None, release_this_conn = True
http_tunnel_required = False, err = None, clean_exit = False
def urlopen(
self,
method,
url,
body=None,
headers=None,
retries=None,
redirect=True,
assert_same_host=True,
timeout=_Default,
pool_timeout=None,
release_conn=None,
chunked=False,
body_pos=None,
**response_kw
):
"""
Get a connection from the pool and perform an HTTP request. This is the
lowest level call for making a request, so you'll need to specify all
the raw details.
.. note::
More commonly, it's appropriate to use a convenience method provided
by :class:`.RequestMethods`, such as :meth:`request`.
.. note::
`release_conn` will only behave as expected if
`preload_content=False` because we want to make
`preload_content=False` the default behaviour someday soon without
breaking backwards compatibility.
:param method:
HTTP request method (such as GET, POST, PUT, etc.)
:param url:
The URL to perform the request on.
:param body:
Data to send in the request body, either :class:`str`, :class:`bytes`,
an iterable of :class:`str`/:class:`bytes`, or a file-like object.
:param headers:
Dictionary of custom headers to send, such as User-Agent,
If-None-Match, etc. If None, pool headers are used. If provided,
these headers completely replace any pool-specific headers.
:param retries:
Configure the number of retries to allow before raising a
:class:`~urllib3.exceptions.MaxRetryError` exception.
Pass ``None`` to retry until you receive a response. Pass a
:class:`~urllib3.util.retry.Retry` object for fine-grained control
over different types of retries.
Pass an integer number to retry connection errors that many times,
but no other types of errors. Pass zero to never retry.
If ``False``, then retries are disabled and any exception is raised
immediately. Also, instead of raising a MaxRetryError on redirects,
the redirect response will be returned.
:type retries: :class:`~urllib3.util.retry.Retry`, False, or an int.
:param redirect:
If True, automatically handle redirects (status codes 301, 302,
303, 307, 308). Each redirect counts as a retry. Disabling retries
will disable redirect, too.
:param assert_same_host:
If ``True``, will make sure that the host of the pool requests is
consistent else will raise HostChangedError. When ``False``, you can
use the pool on an HTTP proxy and request foreign hosts.
:param timeout:
If specified, overrides the default timeout for this one
request. It may be a float (in seconds) or an instance of
:class:`urllib3.util.Timeout`.
:param pool_timeout:
If set and the pool is set to block=True, then this method will
block for ``pool_timeout`` seconds and raise EmptyPoolError if no
connection is available within the time period.
:param release_conn:
If False, then the urlopen call will not release the connection
back into the pool once a response is received (but will release if
you read the entire contents of the response such as when
`preload_content=True`). This is useful if you're not preloading
the response's content immediately. You will need to call
``r.release_conn()`` on the response ``r`` to return the connection
back into the pool. If None, it takes the value of
``response_kw.get('preload_content', True)``.
:param chunked:
If True, urllib3 will send the body using chunked transfer
encoding. Otherwise, urllib3 will send the body using the standard
content-length form. Defaults to False.
:param int body_pos:
Position to seek to in file-like body in the event of a retry or
redirect. Typically this won't need to be set because urllib3 will
auto-populate the value when needed.
:param \\**response_kw:
Additional parameters are passed to
:meth:`urllib3.response.HTTPResponse.from_httplib`
"""
parsed_url = parse_url(url)
destination_scheme = parsed_url.scheme
if headers is None:
headers = self.headers
if not isinstance(retries, Retry):
retries = Retry.from_int(retries, redirect=redirect, default=self.retries)
if release_conn is None:
release_conn = response_kw.get("preload_content", True)
# Check host
if assert_same_host and not self.is_same_host(url):
raise HostChangedError(self, url, retries)
# Ensure that the URL we're connecting to is properly encoded
if url.startswith("/"):
url = six.ensure_str(_encode_target(url))
else:
url = six.ensure_str(parsed_url.url)
conn = None
# Track whether `conn` needs to be released before
# returning/raising/recursing. Update this variable if necessary, and
# leave `release_conn` constant throughout the function. That way, if
# the function recurses, the original value of `release_conn` will be
# passed down into the recursive call, and its value will be respected.
#
# See issue #651 [1] for details.
#
# [1] <https://github.com/urllib3/urllib3/issues/651>
release_this_conn = release_conn
http_tunnel_required = connection_requires_http_tunnel(
self.proxy, self.proxy_config, destination_scheme
)
# Merge the proxy headers. Only done when not using HTTP CONNECT. We
# have to copy the headers dict so we can safely change it without those
# changes being reflected in anyone else's copy.
if not http_tunnel_required:
headers = headers.copy()
headers.update(self.proxy_headers)
# Must keep the exception bound to a separate variable or else Python 3
# complains about UnboundLocalError.
err = None
# Keep track of whether we cleanly exited the except block. This
# ensures we do proper cleanup in finally.
clean_exit = False
# Rewind body position, if needed. Record current position
# for future rewinds in the event of a redirect/retry.
body_pos = set_file_position(body, body_pos)
try:
# Request a connection from the queue.
timeout_obj = self._get_timeout(timeout)
conn = self._get_conn(timeout=pool_timeout)
conn.timeout = timeout_obj.connect_timeout
is_new_proxy_conn = self.proxy is not None and not getattr(
conn, "sock", None
)
if is_new_proxy_conn and http_tunnel_required:
self._prepare_proxy(conn)
# Make the request on the httplib connection object.
> httplib_response = self._make_request(
conn,
method,
url,
timeout=timeout_obj,
body=body,
headers=headers,
chunked=chunked,
)
../../shiningpanda/jobs/c6a9534b/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py:699:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
self = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7fdbb4852100>
conn = <urllib3.connection.HTTPSConnection object at 0x7fdbb5b47ee0>
method = 'GET'
url = '/thumbnail?datasetId=221&version=3&path=files%2Fderivative%2Fsub-M168%2Fdigital-traces%2FpCm168_AAV_Z_20x_191211_S3B_lx_IGS.xml'
timeout = Timeout(connect=None, read=None, total=None), chunked = False
httplib_request_kw = {'body': None, 'headers': {'User-Agent': 'python-requests/2.25.1', 'Accept-Encoding': 'gzip, deflate', 'Accept': '*/*', 'Connection': 'keep-alive'}}
timeout_obj = Timeout(connect=None, read=None, total=None)
def _make_request(
self, conn, method, url, timeout=_Default, chunked=False, **httplib_request_kw
):
"""
Perform a request on a given urllib connection object taken from our
pool.
:param conn:
a connection from one of our connection pools
:param timeout:
Socket timeout in seconds for the request. This can be a
float or integer, which will set the same timeout value for
the socket connect and the socket read, or an instance of
:class:`urllib3.util.Timeout`, which gives you more fine-grained
control over your timeouts.
"""
self.num_requests += 1
timeout_obj = self._get_timeout(timeout)
timeout_obj.start_connect()
conn.timeout = timeout_obj.connect_timeout
# Trigger any extra validation we need to do.
try:
> self._validate_conn(conn)
../../shiningpanda/jobs/c6a9534b/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py:382:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
self = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7fdbb4852100>
conn = <urllib3.connection.HTTPSConnection object at 0x7fdbb5b47ee0>
def _validate_conn(self, conn):
"""
Called right before a request is made, after the socket is created.
"""
super(HTTPSConnectionPool, self)._validate_conn(conn)
# Force connect early to allow us to validate the connection.
if not getattr(conn, "sock", None): # AppEngine might not have `.sock`
> conn.connect()
../../shiningpanda/jobs/c6a9534b/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py:1010:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
self = <urllib3.connection.HTTPSConnection object at 0x7fdbb5b47ee0>
def connect(self):
# Add certificate verification
conn = self._new_conn()
hostname = self.host
tls_in_tls = False
if self._is_using_tunnel():
if self.tls_in_tls_required:
conn = self._connect_tls_proxy(hostname, conn)
tls_in_tls = True
self.sock = conn
# Calls self._set_hostport(), so self.host is
# self._tunnel_host below.
self._tunnel()
# Mark this connection as not reusable
self.auto_open = 0
# Override the host with the one we're requesting data from.
hostname = self._tunnel_host
server_hostname = hostname
if self.server_hostname is not None:
server_hostname = self.server_hostname
is_time_off = datetime.date.today() < RECENT_DATE
if is_time_off:
warnings.warn(
(
"System time is way off (before {0}). This will probably "
"lead to SSL verification errors"
).format(RECENT_DATE),
SystemTimeWarning,
)
# Wrap socket using verification with the root certs in
# trusted_root_certs
default_ssl_context = False
if self.ssl_context is None:
default_ssl_context = True
self.ssl_context = create_urllib3_context(
ssl_version=resolve_ssl_version(self.ssl_version),
cert_reqs=resolve_cert_reqs(self.cert_reqs),
)
context = self.ssl_context
context.verify_mode = resolve_cert_reqs(self.cert_reqs)
# Try to load OS default certs if none are given.
# Works well on Windows (requires Python3.4+)
if (
not self.ca_certs
and not self.ca_cert_dir
and not self.ca_cert_data
and default_ssl_context
and hasattr(context, "load_default_certs")
):
context.load_default_certs()
> self.sock = ssl_wrap_socket(
sock=conn,
keyfile=self.key_file,
certfile=self.cert_file,
key_password=self.key_password,
ca_certs=self.ca_certs,
ca_cert_dir=self.ca_cert_dir,
ca_cert_data=self.ca_cert_data,
server_hostname=server_hostname,
ssl_context=context,
tls_in_tls=tls_in_tls,
)
../../shiningpanda/jobs/c6a9534b/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connection.py:411:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
sock = <socket.socket [closed] fd=-1, family=AddressFamily.AF_INET, type=SocketKind.SOCK_STREAM, proto=6>
keyfile = None, certfile = None, cert_reqs = None
ca_certs = '/home/cmiss/Jenkins/shiningpanda/jobs/c6a9534b/virtualenvs/d41d8cd9/lib/python3.9/site-packages/certifi/cacert.pem'
server_hostname = 'sparc.biolucida.net', ssl_version = None, ciphers = None
ssl_context = <ssl.SSLContext object at 0x7fdbb4d06a40>, ca_cert_dir = None
key_password = None, ca_cert_data = None, tls_in_tls = False
def ssl_wrap_socket(
sock,
keyfile=None,
certfile=None,
cert_reqs=None,
ca_certs=None,
server_hostname=None,
ssl_version=None,
ciphers=None,
ssl_context=None,
ca_cert_dir=None,
key_password=None,
ca_cert_data=None,
tls_in_tls=False,
):
"""
All arguments except for server_hostname, ssl_context, and ca_cert_dir have
the same meaning as they do when using :func:`ssl.wrap_socket`.
:param server_hostname:
When SNI is supported, the expected hostname of the certificate
:param ssl_context:
A pre-made :class:`SSLContext` object. If none is provided, one will
be created using :func:`create_urllib3_context`.
:param ciphers:
A string of ciphers we wish the client to support.
:param ca_cert_dir:
A directory containing CA certificates in multiple separate files, as
supported by OpenSSL's -CApath flag or the capath argument to
SSLContext.load_verify_locations().
:param key_password:
Optional password if the keyfile is encrypted.
:param ca_cert_data:
Optional string containing CA certificates in PEM format suitable for
passing as the cadata parameter to SSLContext.load_verify_locations()
:param tls_in_tls:
Use SSLTransport to wrap the existing socket.
"""
context = ssl_context
if context is None:
# Note: This branch of code and all the variables in it are no longer
# used by urllib3 itself. We should consider deprecating and removing
# this code.
context = create_urllib3_context(ssl_version, cert_reqs, ciphers=ciphers)
if ca_certs or ca_cert_dir or ca_cert_data:
try:
context.load_verify_locations(ca_certs, ca_cert_dir, ca_cert_data)
except (IOError, OSError) as e:
raise SSLError(e)
elif ssl_context is None and hasattr(context, "load_default_certs"):
# try to load OS default certs; works well on Windows (require Python3.4+)
context.load_default_certs()
# Attempt to detect if we get the goofy behavior of the
# keyfile being encrypted and OpenSSL asking for the
# passphrase via the terminal and instead error out.
if keyfile and key_password is None and _is_key_file_encrypted(keyfile):
raise SSLError("Client private key is encrypted, password is required")
if certfile:
if key_password is None:
context.load_cert_chain(certfile, keyfile)
else:
context.load_cert_chain(certfile, keyfile, key_password)
try:
if hasattr(context, "set_alpn_protocols"):
context.set_alpn_protocols(ALPN_PROTOCOLS)
except NotImplementedError:
pass
# If we detect server_hostname is an IP address then the SNI
# extension should not be used according to RFC3546 Section 3.1
use_sni_hostname = server_hostname and not is_ipaddress(server_hostname)
# SecureTransport uses server_hostname in certificate verification.
send_sni = (use_sni_hostname and HAS_SNI) or (
IS_SECURETRANSPORT and server_hostname
)
# Do not warn the user if server_hostname is an invalid SNI hostname.
if not HAS_SNI and use_sni_hostname:
warnings.warn(
"An HTTPS request has been made, but the SNI (Server Name "
"Indication) extension to TLS is not available on this platform. "
"This may cause the server to present an incorrect TLS "
"certificate, which can cause validation failures. You can upgrade to "
"a newer version of Python to solve this. For more information, see "
"https://urllib3.readthedocs.io/en/latest/advanced-usage.html"
"#ssl-warnings",
SNIMissingWarning,
)
if send_sni:
> ssl_sock = _ssl_wrap_socket_impl(
sock, context, tls_in_tls, server_hostname=server_hostname
)
../../shiningpanda/jobs/c6a9534b/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/util/ssl_.py:428:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
sock = <socket.socket [closed] fd=-1, family=AddressFamily.AF_INET, type=SocketKind.SOCK_STREAM, proto=6>
ssl_context = <ssl.SSLContext object at 0x7fdbb4d06a40>, tls_in_tls = False
server_hostname = 'sparc.biolucida.net'
def _ssl_wrap_socket_impl(sock, ssl_context, tls_in_tls, server_hostname=None):
if tls_in_tls:
if not SSLTransport:
# Import error, ssl is not available.
raise ProxySchemeUnsupported(
"TLS in TLS requires support for the 'ssl' module"
)
SSLTransport._validate_ssl_context_for_tls_in_tls(ssl_context)
return SSLTransport(sock, ssl_context, server_hostname)
if server_hostname:
> return ssl_context.wrap_socket(sock, server_hostname=server_hostname)
../../shiningpanda/jobs/c6a9534b/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/util/ssl_.py:472:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
self = <ssl.SSLContext object at 0x7fdbb4d06a40>
sock = <socket.socket [closed] fd=-1, family=AddressFamily.AF_INET, type=SocketKind.SOCK_STREAM, proto=6>
server_side = False, do_handshake_on_connect = True, suppress_ragged_eofs = True
server_hostname = 'sparc.biolucida.net', session = None
def wrap_socket(self, sock, server_side=False,
do_handshake_on_connect=True,
suppress_ragged_eofs=True,
server_hostname=None, session=None):
# SSLSocket class handles server_hostname encoding before it calls
# ctx._wrap_socket()
> return self.sslsocket_class._create(
sock=sock,
server_side=server_side,
do_handshake_on_connect=do_handshake_on_connect,
suppress_ragged_eofs=suppress_ragged_eofs,
server_hostname=server_hostname,
context=self,
session=session
)
/usr/lib/python3.9/ssl.py:501:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
cls = <class 'ssl.SSLSocket'>
sock = <socket.socket [closed] fd=-1, family=AddressFamily.AF_INET, type=SocketKind.SOCK_STREAM, proto=6>
server_side = False, do_handshake_on_connect = True, suppress_ragged_eofs = True
server_hostname = 'sparc.biolucida.net'
context = <ssl.SSLContext object at 0x7fdbb4d06a40>, session = None
@classmethod
def _create(cls, sock, server_side=False, do_handshake_on_connect=True,
suppress_ragged_eofs=True, server_hostname=None,
context=None, session=None):
if sock.getsockopt(SOL_SOCKET, SO_TYPE) != SOCK_STREAM:
raise NotImplementedError("only stream sockets are supported")
if server_side:
if server_hostname:
raise ValueError("server_hostname can only be specified "
"in client mode")
if session is not None:
raise ValueError("session can only be specified in "
"client mode")
if context.check_hostname and not server_hostname:
raise ValueError("check_hostname requires server_hostname")
kwargs = dict(
family=sock.family, type=sock.type, proto=sock.proto,
fileno=sock.fileno()
)
self = cls.__new__(cls, **kwargs)
super(SSLSocket, self).__init__(**kwargs)
sock_timeout = sock.gettimeout()
sock.detach()
self._context = context
self._session = session
self._closed = False
self._sslobj = None
self.server_side = server_side
self.server_hostname = context._encode_hostname(server_hostname)
self.do_handshake_on_connect = do_handshake_on_connect
self.suppress_ragged_eofs = suppress_ragged_eofs
# See if we are connected
try:
self.getpeername()
except OSError as e:
if e.errno != errno.ENOTCONN:
raise
connected = False
blocking = self.getblocking()
self.setblocking(False)
try:
# We are not connected so this is not supposed to block, but
# testing revealed otherwise on macOS and Windows so we do
# the non-blocking dance regardless. Our raise when any data
# is found means consuming the data is harmless.
notconn_pre_handshake_data = self.recv(1)
except OSError as e:
# EINVAL occurs for recv(1) on non-connected on unix sockets.
if e.errno not in (errno.ENOTCONN, errno.EINVAL):
raise
notconn_pre_handshake_data = b''
self.setblocking(blocking)
if notconn_pre_handshake_data:
# This prevents pending data sent to the socket before it was
# closed from escaping to the caller who could otherwise
# presume it came through a successful TLS connection.
reason = "Closed before TLS handshake with data in recv buffer."
notconn_pre_handshake_data_error = SSLError(e.errno, reason)
# Add the SSLError attributes that _ssl.c always adds.
notconn_pre_handshake_data_error.reason = reason
notconn_pre_handshake_data_error.library = None
try:
self.close()
except OSError:
pass
try:
raise notconn_pre_handshake_data_error
finally:
# Explicitly break the reference cycle.
notconn_pre_handshake_data_error = None
else:
connected = True
self.settimeout(sock_timeout) # Must come after setblocking() calls.
self._connected = connected
if connected:
# create the SSL object
try:
self._sslobj = self._context._wrap_socket(
self, server_side, self.server_hostname,
owner=self, session=self._session,
)
if do_handshake_on_connect:
timeout = self.gettimeout()
if timeout == 0.0:
# non-blocking
raise ValueError("do_handshake_on_connect should not be specified for non-blocking sockets")
> self.do_handshake()
/usr/lib/python3.9/ssl.py:1074:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
self = <ssl.SSLSocket [closed] fd=-1, family=AddressFamily.AF_INET, type=SocketKind.SOCK_STREAM, proto=6>
block = False
@_sslcopydoc
def do_handshake(self, block=False):
self._check_connected()
timeout = self.gettimeout()
try:
if timeout == 0.0 and block:
self.settimeout(None)
> self._sslobj.do_handshake()
E urllib3.exceptions.ProtocolError: ('Connection aborted.', ConnectionResetError(104, 'Connection reset by peer'))
/usr/lib/python3.9/ssl.py:1343: ProtocolError
During handling of the above exception, another exception occurred:
client = <FlaskClient <Flask 'app.main'>>
def test_neurolucida_thumbnail_dataset_221(client):
query_string = {'datasetId': 221, 'version': 3, 'path': 'files/derivative/sub-M168/digital-traces/pCm168_AAV_Z_20x_191211_S3B_lx_IGS.xml'}
> r = client.get('/thumbnail/neurolucida', query_string=query_string)
tests/test_thumbnails.py:27:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
../../shiningpanda/jobs/c6a9534b/virtualenvs/d41d8cd9/lib/python3.9/site-packages/werkzeug/test.py:1029: in get
return self.open(*args, **kw)
../../shiningpanda/jobs/c6a9534b/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/testing.py:222: in open
return Client.open(
../../shiningpanda/jobs/c6a9534b/virtualenvs/d41d8cd9/lib/python3.9/site-packages/werkzeug/test.py:993: in open
response = self.run_wsgi_app(environ.copy(), buffered=buffered)
../../shiningpanda/jobs/c6a9534b/virtualenvs/d41d8cd9/lib/python3.9/site-packages/werkzeug/test.py:884: in run_wsgi_app
rv = run_wsgi_app(self.application, environ, buffered=buffered)
../../shiningpanda/jobs/c6a9534b/virtualenvs/d41d8cd9/lib/python3.9/site-packages/werkzeug/test.py:1119: in run_wsgi_app
app_rv = app(environ, start_response)
../../shiningpanda/jobs/c6a9534b/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:2463: in __call__
return self.wsgi_app(environ, start_response)
../../shiningpanda/jobs/c6a9534b/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:2449: in wsgi_app
response = self.handle_exception(e)
../../shiningpanda/jobs/c6a9534b/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask_cors/extension.py:161: in wrapped_function
return cors_after_request(app.make_response(f(*args, **kwargs)))
../../shiningpanda/jobs/c6a9534b/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1866: in handle_exception
reraise(exc_type, exc_value, tb)
../../shiningpanda/jobs/c6a9534b/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/_compat.py:39: in reraise
raise value
../../shiningpanda/jobs/c6a9534b/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:2446: in wsgi_app
response = self.full_dispatch_request()
../../shiningpanda/jobs/c6a9534b/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1951: in full_dispatch_request
rv = self.handle_user_exception(e)
../../shiningpanda/jobs/c6a9534b/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask_cors/extension.py:161: in wrapped_function
return cors_after_request(app.make_response(f(*args, **kwargs)))
../../shiningpanda/jobs/c6a9534b/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1820: in handle_user_exception
reraise(exc_type, exc_value, tb)
../../shiningpanda/jobs/c6a9534b/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/_compat.py:39: in reraise
raise value
../../shiningpanda/jobs/c6a9534b/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1949: in full_dispatch_request
rv = self.dispatch_request()
../../shiningpanda/jobs/c6a9534b/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1935: in dispatch_request
return self.view_functions[rule.endpoint](**req.view_args)
app/main.py:306: in thumbnail_from_neurolucida_file
response = requests.get(url, params=query_args)
../../shiningpanda/jobs/c6a9534b/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/api.py:76: in get
return request('get', url, params=params, **kwargs)
../../shiningpanda/jobs/c6a9534b/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/api.py:61: in request
return session.request(method=method, url=url, **kwargs)
../../shiningpanda/jobs/c6a9534b/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/sessions.py:542: in request
resp = self.send(prep, **send_kwargs)
../../shiningpanda/jobs/c6a9534b/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/sessions.py:655: in send
r = adapter.send(request, **kwargs)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
self = <requests.adapters.HTTPAdapter object at 0x7fdbb48524c0>
request = <PreparedRequest [GET]>, stream = False
timeout = Timeout(connect=None, read=None, total=None), verify = True
cert = None, proxies = OrderedDict()
def send(self, request, stream=False, timeout=None, verify=True, cert=None, proxies=None):
"""Sends PreparedRequest object. Returns Response object.
:param request: The :class:`PreparedRequest <PreparedRequest>` being sent.
:param stream: (optional) Whether to stream the request content.
:param timeout: (optional) How long to wait for the server to send
data before giving up, as a float, or a :ref:`(connect timeout,
read timeout) <timeouts>` tuple.
:type timeout: float or tuple or urllib3 Timeout object
:param verify: (optional) Either a boolean, in which case it controls whether
we verify the server's TLS certificate, or a string, in which case it
must be a path to a CA bundle to use
:param cert: (optional) Any user-provided SSL certificate to be trusted.
:param proxies: (optional) The proxies dictionary to apply to the request.
:rtype: requests.Response
"""
try:
conn = self.get_connection(request.url, proxies)
except LocationValueError as e:
raise InvalidURL(e, request=request)
self.cert_verify(conn, request.url, verify, cert)
url = self.request_url(request, proxies)
self.add_headers(request, stream=stream, timeout=timeout, verify=verify, cert=cert, proxies=proxies)
chunked = not (request.body is None or 'Content-Length' in request.headers)
if isinstance(timeout, tuple):
try:
connect, read = timeout
timeout = TimeoutSauce(connect=connect, read=read)
except ValueError as e:
# this may raise a string formatting error.
err = ("Invalid timeout {}. Pass a (connect, read) "
"timeout tuple, or a single float to set "
"both timeouts to the same value".format(timeout))
raise ValueError(err)
elif isinstance(timeout, TimeoutSauce):
pass
else:
timeout = TimeoutSauce(connect=timeout, read=timeout)
try:
if not chunked:
resp = conn.urlopen(
method=request.method,
url=url,
body=request.body,
headers=request.headers,
redirect=False,
assert_same_host=False,
preload_content=False,
decode_content=False,
retries=self.max_retries,
timeout=timeout
)
# Send the request.
else:
if hasattr(conn, 'proxy_pool'):
conn = conn.proxy_pool
low_conn = conn._get_conn(timeout=DEFAULT_POOL_TIMEOUT)
try:
low_conn.putrequest(request.method,
url,
skip_accept_encoding=True)
for header, value in request.headers.items():
low_conn.putheader(header, value)
low_conn.endheaders()
for i in request.body:
low_conn.send(hex(len(i))[2:].encode('utf-8'))
low_conn.send(b'\r\n')
low_conn.send(i)
low_conn.send(b'\r\n')
low_conn.send(b'0\r\n\r\n')
# Receive the response from the server
try:
# For Python 2.7, use buffering of HTTP responses
r = low_conn.getresponse(buffering=True)
except TypeError:
# For compatibility with Python 3.3+
r = low_conn.getresponse()
resp = HTTPResponse.from_httplib(
r,
pool=conn,
connection=low_conn,
preload_content=False,
decode_content=False
)
except:
# If we hit any problems here, clean up the connection.
# Then, reraise so that we can handle the actual exception.
low_conn.close()
raise
except (ProtocolError, socket.error) as err:
> raise ConnectionError(err, request=request)
E requests.exceptions.ConnectionError: ('Connection aborted.', ConnectionResetError(104, 'Connection reset by peer'))
../../shiningpanda/jobs/c6a9534b/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/adapters.py:498: ConnectionError
=============================== warnings summary ===============================
/home/cmiss/Jenkins/shiningpanda/jobs/c6a9534b/virtualenvs/d41d8cd9/lib/python3.9/site-packages/apscheduler/__init__.py:1
/home/cmiss/Jenkins/shiningpanda/jobs/c6a9534b/virtualenvs/d41d8cd9/lib/python3.9/site-packages/apscheduler/__init__.py:1: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html
from pkg_resources import get_distribution, DistributionNotFound
/home/cmiss/Jenkins/shiningpanda/jobs/c6a9534b/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pkg_resources/__init__.py:2871
/home/cmiss/Jenkins/shiningpanda/jobs/c6a9534b/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pkg_resources/__init__.py:2871
/home/cmiss/Jenkins/shiningpanda/jobs/c6a9534b/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pkg_resources/__init__.py:2871: DeprecationWarning: Deprecated call to `pkg_resources.declare_namespace('google')`.
Implementing implicit namespace packages (as specified in PEP 420) is preferred to `pkg_resources.declare_namespace`. See https://setuptools.pypa.io/en/latest/references/keywords.html#keyword-namespace-packages
declare_namespace(pkg)
/home/cmiss/Jenkins/shiningpanda/jobs/c6a9534b/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pkg_resources/__init__.py:2871
/home/cmiss/Jenkins/shiningpanda/jobs/c6a9534b/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pkg_resources/__init__.py:2871: DeprecationWarning: Deprecated call to `pkg_resources.declare_namespace('google.logging')`.
Implementing implicit namespace packages (as specified in PEP 420) is preferred to `pkg_resources.declare_namespace`. See https://setuptools.pypa.io/en/latest/references/keywords.html#keyword-namespace-packages
declare_namespace(pkg)
/home/cmiss/Jenkins/shiningpanda/jobs/c6a9534b/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pkg_resources/__init__.py:2350
/home/cmiss/Jenkins/shiningpanda/jobs/c6a9534b/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pkg_resources/__init__.py:2350: DeprecationWarning: Deprecated call to `pkg_resources.declare_namespace('google')`.
Implementing implicit namespace packages (as specified in PEP 420) is preferred to `pkg_resources.declare_namespace`. See https://setuptools.pypa.io/en/latest/references/keywords.html#keyword-namespace-packages
declare_namespace(parent)
/home/cmiss/Jenkins/shiningpanda/jobs/c6a9534b/virtualenvs/d41d8cd9/lib/python3.9/site-packages/marshmallow/__init__.py:17
/home/cmiss/Jenkins/shiningpanda/jobs/c6a9534b/virtualenvs/d41d8cd9/lib/python3.9/site-packages/marshmallow/__init__.py:17: DeprecationWarning: distutils Version classes are deprecated. Use packaging.version instead.
__version_info__ = tuple(LooseVersion(__version__).version)
/home/cmiss/Jenkins/shiningpanda/jobs/c6a9534b/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask_marshmallow/__init__.py:34
/home/cmiss/Jenkins/shiningpanda/jobs/c6a9534b/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask_marshmallow/__init__.py:34: DeprecationWarning: distutils Version classes are deprecated. Use packaging.version instead.
__version_info__ = tuple(LooseVersion(__version__).version)
/home/cmiss/Jenkins/shiningpanda/jobs/c6a9534b/virtualenvs/d41d8cd9/lib/python3.9/site-packages/future/standard_library/__init__.py:65
/home/cmiss/Jenkins/shiningpanda/jobs/c6a9534b/virtualenvs/d41d8cd9/lib/python3.9/site-packages/future/standard_library/__init__.py:65: DeprecationWarning: the imp module is deprecated in favour of importlib; see the module's documentation for alternative uses
import imp
/home/cmiss/Jenkins/shiningpanda/jobs/c6a9534b/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pennsieve/cache/cache_segment_pb2.py:19
/home/cmiss/Jenkins/shiningpanda/jobs/c6a9534b/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pennsieve/cache/cache_segment_pb2.py:19: DeprecationWarning: Call to deprecated create function FileDescriptor(). Note: Create unlinked descriptors is going to go away. Please use get/find descriptors from generated code or query the descriptor_pool.
DESCRIPTOR = _descriptor.FileDescriptor(
/home/cmiss/Jenkins/shiningpanda/jobs/c6a9534b/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pennsieve/cache/cache_segment_pb2.py:36
/home/cmiss/Jenkins/shiningpanda/jobs/c6a9534b/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pennsieve/cache/cache_segment_pb2.py:36: DeprecationWarning: Call to deprecated create function FieldDescriptor(). Note: Create unlinked descriptors is going to go away. Please use get/find descriptors from generated code or query the descriptor_pool.
_descriptor.FieldDescriptor(
/home/cmiss/Jenkins/shiningpanda/jobs/c6a9534b/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pennsieve/cache/cache_segment_pb2.py:53
/home/cmiss/Jenkins/shiningpanda/jobs/c6a9534b/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pennsieve/cache/cache_segment_pb2.py:53: DeprecationWarning: Call to deprecated create function FieldDescriptor(). Note: Create unlinked descriptors is going to go away. Please use get/find descriptors from generated code or query the descriptor_pool.
_descriptor.FieldDescriptor(
/home/cmiss/Jenkins/shiningpanda/jobs/c6a9534b/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pennsieve/cache/cache_segment_pb2.py:70
/home/cmiss/Jenkins/shiningpanda/jobs/c6a9534b/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pennsieve/cache/cache_segment_pb2.py:70: DeprecationWarning: Call to deprecated create function FieldDescriptor(). Note: Create unlinked descriptors is going to go away. Please use get/find descriptors from generated code or query the descriptor_pool.
_descriptor.FieldDescriptor(
/home/cmiss/Jenkins/shiningpanda/jobs/c6a9534b/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pennsieve/cache/cache_segment_pb2.py:29
/home/cmiss/Jenkins/shiningpanda/jobs/c6a9534b/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pennsieve/cache/cache_segment_pb2.py:29: DeprecationWarning: Call to deprecated create function Descriptor(). Note: Create unlinked descriptors is going to go away. Please use get/find descriptors from generated code or query the descriptor_pool.
_CACHESEGMENT = _descriptor.Descriptor(
tests/test_health.py::test_request_response
/home/cmiss/Jenkins/workspace/SPARC-API/tests/test_health.py:13: DeprecationWarning: Please use assertEqual instead.
assert_equals("healthy", json_response.get("status"))
-- Docs: https://docs.pytest.org/en/latest/warnings.html
=========================== short test summary info ============================
FAILED tests/test_thumbnails.py::test_neurolucida_thumbnail - requests.except...
FAILED tests/test_thumbnails.py::test_neurolucida_thumbnail_dataset_221 - req...
======= 2 failed, 95 passed, 3 skipped, 14 warnings in 229.33s (0:03:49) =======
Build step 'Virtualenv Builder' marked build as failure
[Slack Notifications] found #842 as previous completed, non-aborted build
[Slack Notifications] will send OnEveryFailureNotification because build matches and user preferences allow it
Finished: FAILURE
![[Jenkins]](/jenkins/static/36965a9f/images/svgs/logo.svg){kind=logo}
