Console Output

Started by timer
Running as SYSTEM
Building remotely on Ubuntu_18.04_bioeng49 (buildslave Testing) in workspace /home/cmiss/Jenkins/workspace/SPARC-API-DEV
[WS-CLEANUP] Deleting project workspace...
[WS-CLEANUP] Deferred wipeout is used...
[WS-CLEANUP] Done
The recommended git tool is: NONE
No credentials specified
Cloning the remote Git repository
Cloning repository https://github.com/nih-sparc/sparc-api.git
 > git init /home/cmiss/Jenkins/workspace/SPARC-API-DEV # timeout=10
Fetching upstream changes from https://github.com/nih-sparc/sparc-api.git
 > git --version # timeout=10
 > git --version # 'git version 2.25.1'
 > git fetch --tags --force --progress -- https://github.com/nih-sparc/sparc-api.git +refs/heads/*:refs/remotes/origin/* # timeout=10
 > git config remote.origin.url https://github.com/nih-sparc/sparc-api.git # timeout=10
 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10
Avoid second fetch
 > git rev-parse refs/remotes/origin/master^{commit} # timeout=10
Checking out Revision c9d63010c6413f7ba33d6331f7d95b6dd2a06d7d (refs/remotes/origin/master)
 > git config core.sparsecheckout # timeout=10
 > git checkout -f c9d63010c6413f7ba33d6331f7d95b6dd2a06d7d # timeout=10
Commit message: "Merge pull request #224 from nih-sparc/nickerso-patch-1"
 > git rev-list --no-walk c9d63010c6413f7ba33d6331f7d95b6dd2a06d7d # timeout=10
[SPARC-API-DEV] $ /bin/sh -xe /tmp/shiningpanda6915376242483956882.sh
+ pwd
+ export PYTHONPATH=/home/cmiss/Jenkins/workspace/SPARC-API-DEV
+ export SCICRUNCH_HOST=https://scicrunch.org/api/1/elastic/SPARC_PortalDatasets_dev
+ export PROTOCOL_BUFFERS_PYTHON_IMPLEMENTATION=python
+ pip install -r requirements.txt
Requirement already satisfied: api==0.0.7 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 1)) (0.0.7)
Requirement already satisfied: pennsieve==6.1.1 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 2)) (6.1.1)
Requirement already satisfied: boto3==1.17.67 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 3)) (1.17.67)
Requirement already satisfied: botocore==1.20.67 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 4)) (1.20.67)
Requirement already satisfied: certifi==2019.11.28 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 5)) (2019.11.28)
Requirement already satisfied: chardet==3.0.4 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 6)) (3.0.4)
Collecting Click==7.1.2 (from -r requirements.txt (line 7))
  Using cached click-7.1.2-py2.py3-none-any.whl.metadata (2.9 kB)
Requirement already satisfied: docutils==0.15.2 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 8)) (0.15.2)
Requirement already satisfied: Flask==1.1.1 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 9)) (1.1.1)
Requirement already satisfied: flask-marshmallow==0.10.1 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 10)) (0.10.1)
Requirement already satisfied: flask-cors==3.0.8 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 11)) (3.0.8)
Requirement already satisfied: gunicorn==20.0.4 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 12)) (20.0.4)
Requirement already satisfied: idna==2.8 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 13)) (2.8)
Requirement already satisfied: itsdangerous==1.1.0 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 14)) (1.1.0)
Requirement already satisfied: Jinja2==2.11.3 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 15)) (2.11.3)
Requirement already satisfied: jmespath==0.9.4 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 16)) (0.9.4)
Requirement already satisfied: MarkupSafe==1.1.1 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 17)) (1.1.1)
Requirement already satisfied: marshmallow==3.2.2 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 18)) (3.2.2)
Requirement already satisfied: nose==1.3.7 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 19)) (1.3.7)
Requirement already satisfied: osparc==0.4.3 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 20)) (0.4.3)
Requirement already satisfied: pillow in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 21)) (10.3.0)
Requirement already satisfied: public==2019.4.13 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 22)) (2019.4.13)
Requirement already satisfied: pytest in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 23)) (5.4.3)
Requirement already satisfied: pymongo==3.8.0 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 24)) (3.8.0)
Requirement already satisfied: python-dateutil==2.8.0 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 25)) (2.8.0)
Requirement already satisfied: python-dotenv==0.10.3 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 26)) (0.10.3)
Requirement already satisfied: query-string==2019.4.13 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 27)) (2019.4.13)
Requirement already satisfied: requests==2.25.1 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 28)) (2.25.1)
Requirement already satisfied: s3transfer==0.4.2 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 29)) (0.4.2)
Requirement already satisfied: sendgrid==6.9.7 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 30)) (6.9.7)
Requirement already satisfied: six==1.13.0 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 31)) (1.13.0)
Requirement already satisfied: SQLAlchemy==1.3.20 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 32)) (1.3.20)
Requirement already satisfied: urllib3==1.26.4 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 33)) (1.26.4)
Requirement already satisfied: Werkzeug==0.16.0 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 34)) (0.16.0)
Requirement already satisfied: psycopg2-binary==2.9.5 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 35)) (2.9.5)
Requirement already satisfied: APScheduler==3.7.0 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 36)) (3.7.0)
Requirement already satisfied: google-api-python-client==2.52.0 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 37)) (2.52.0)
Requirement already satisfied: oauth2client==4.1.3 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 38)) (4.1.3)
Requirement already satisfied: algoliasearch==2.6.2 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 39)) (2.6.2)
Requirement already satisfied: contentful==1.13.1 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 40)) (1.13.1)
Requirement already satisfied: contentful_management==2.11.0 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 41)) (2.11.0)
Requirement already satisfied: configparser>=3.5 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from pennsieve==6.1.1->-r requirements.txt (line 2)) (6.0.1)
Requirement already satisfied: deprecated>=1.2.0 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from pennsieve==6.1.1->-r requirements.txt (line 2)) (1.2.14)
Requirement already satisfied: future>=0.15.0 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from pennsieve==6.1.1->-r requirements.txt (line 2)) (1.0.0)
Requirement already satisfied: futures in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from pennsieve==6.1.1->-r requirements.txt (line 2)) (3.0.5)
Requirement already satisfied: protobuf>=3.2.0 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from pennsieve==6.1.1->-r requirements.txt (line 2)) (4.25.3)
Requirement already satisfied: python-jose==3.2.0 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from pennsieve==6.1.1->-r requirements.txt (line 2)) (3.2.0)
Requirement already satisfied: pytz>=2016 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from pennsieve==6.1.1->-r requirements.txt (line 2)) (2024.1)
Requirement already satisfied: rsa==4.0 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from pennsieve==6.1.1->-r requirements.txt (line 2)) (4.0)
Requirement already satisfied: semver>=2.8.0 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from pennsieve==6.1.1->-r requirements.txt (line 2)) (3.0.2)
Requirement already satisfied: websocket-client>=0.57.0 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from pennsieve==6.1.1->-r requirements.txt (line 2)) (1.7.0)
Requirement already satisfied: docopt>=0.6 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from pennsieve==6.1.1->-r requirements.txt (line 2)) (0.6.2)
Requirement already satisfied: psutil>=5.4 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from pennsieve==6.1.1->-r requirements.txt (line 2)) (5.9.8)
Requirement already satisfied: setuptools>=3.0 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from gunicorn==20.0.4->-r requirements.txt (line 12)) (69.2.0)
Requirement already satisfied: python-http-client>=3.2.1 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from sendgrid==6.9.7->-r requirements.txt (line 30)) (3.3.7)
Requirement already satisfied: starkbank-ecdsa>=2.0.1 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from sendgrid==6.9.7->-r requirements.txt (line 30)) (2.2.0)
Requirement already satisfied: tzlocal~=2.0 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from APScheduler==3.7.0->-r requirements.txt (line 36)) (2.1)
Requirement already satisfied: httplib2<1dev,>=0.15.0 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from google-api-python-client==2.52.0->-r requirements.txt (line 37)) (0.22.0)
Requirement already satisfied: google-auth<3.0.0dev,>=1.19.0 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from google-api-python-client==2.52.0->-r requirements.txt (line 37)) (2.29.0)
Requirement already satisfied: google-auth-httplib2>=0.1.0 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from google-api-python-client==2.52.0->-r requirements.txt (line 37)) (0.2.0)
Requirement already satisfied: google-api-core!=2.0.*,!=2.1.*,!=2.2.*,!=2.3.0,<3.0.0dev,>=1.31.5 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from google-api-python-client==2.52.0->-r requirements.txt (line 37)) (2.18.0)
Requirement already satisfied: uritemplate<5,>=3.0.1 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from google-api-python-client==2.52.0->-r requirements.txt (line 37)) (4.1.1)
Requirement already satisfied: pyasn1>=0.1.7 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from oauth2client==4.1.3->-r requirements.txt (line 38)) (0.6.0)
Requirement already satisfied: pyasn1-modules>=0.0.5 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from oauth2client==4.1.3->-r requirements.txt (line 38)) (0.4.0)
Requirement already satisfied: ecdsa<0.15 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from python-jose==3.2.0->pennsieve==6.1.1->-r requirements.txt (line 2)) (0.14.1)
Requirement already satisfied: py>=1.5.0 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from pytest->-r requirements.txt (line 23)) (1.11.0)
Requirement already satisfied: packaging in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from pytest->-r requirements.txt (line 23)) (24.0)
Requirement already satisfied: attrs>=17.4.0 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from pytest->-r requirements.txt (line 23)) (23.2.0)
Requirement already satisfied: more-itertools>=4.0.0 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from pytest->-r requirements.txt (line 23)) (10.2.0)
Requirement already satisfied: pluggy<1.0,>=0.12 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from pytest->-r requirements.txt (line 23)) (0.13.1)
Requirement already satisfied: wcwidth in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from pytest->-r requirements.txt (line 23)) (0.2.13)
Requirement already satisfied: wrapt<2,>=1.10 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from deprecated>=1.2.0->pennsieve==6.1.1->-r requirements.txt (line 2)) (1.16.0)
Requirement already satisfied: googleapis-common-protos<2.0.dev0,>=1.56.2 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from google-api-core!=2.0.*,!=2.1.*,!=2.2.*,!=2.3.0,<3.0.0dev,>=1.31.5->google-api-python-client==2.52.0->-r requirements.txt (line 37)) (1.63.0)
Requirement already satisfied: proto-plus<2.0.0dev,>=1.22.3 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from google-api-core!=2.0.*,!=2.1.*,!=2.2.*,!=2.3.0,<3.0.0dev,>=1.31.5->google-api-python-client==2.52.0->-r requirements.txt (line 37)) (1.23.0)
Requirement already satisfied: cachetools<6.0,>=2.0.0 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from google-auth<3.0.0dev,>=1.19.0->google-api-python-client==2.52.0->-r requirements.txt (line 37)) (5.3.3)
Requirement already satisfied: pyparsing!=3.0.0,!=3.0.1,!=3.0.2,!=3.0.3,<4,>=2.4.2 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from httplib2<1dev,>=0.15.0->google-api-python-client==2.52.0->-r requirements.txt (line 37)) (3.1.2)
Using cached click-7.1.2-py2.py3-none-any.whl (82 kB)
Installing collected packages: Click
  Attempting uninstall: Click
    Found existing installation: click 8.1.7
    Uninstalling click-8.1.7:
      Successfully uninstalled click-8.1.7
ERROR: pip's dependency resolver does not currently take into account all the packages that are installed. This behaviour is the source of the following dependency conflicts.
black 24.3.0 requires click>=8.0.0, but you have click 7.1.2 which is incompatible.
Successfully installed Click-7.1.2

[notice] A new release of pip is available: 24.0 -> 24.1.2
[notice] To update, run: pip install --upgrade pip
+ pip install -r requirements-dev.txt
Requirement already satisfied: pytest==5.4.3 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements-dev.txt (line 1)) (5.4.3)
Requirement already satisfied: pennsieve==6.1.1 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements-dev.txt (line 2)) (6.1.1)
Requirement already satisfied: black in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements-dev.txt (line 3)) (24.3.0)
Requirement already satisfied: isort in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements-dev.txt (line 4)) (5.13.2)
Requirement already satisfied: nose in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements-dev.txt (line 5)) (1.3.7)
Requirement already satisfied: packaging in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements-dev.txt (line 6)) (24.0)
Requirement already satisfied: py>=1.5.0 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from pytest==5.4.3->-r requirements-dev.txt (line 1)) (1.11.0)
Requirement already satisfied: attrs>=17.4.0 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from pytest==5.4.3->-r requirements-dev.txt (line 1)) (23.2.0)
Requirement already satisfied: more-itertools>=4.0.0 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from pytest==5.4.3->-r requirements-dev.txt (line 1)) (10.2.0)
Requirement already satisfied: pluggy<1.0,>=0.12 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from pytest==5.4.3->-r requirements-dev.txt (line 1)) (0.13.1)
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Requirement already satisfied: configparser>=3.5 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from pennsieve==6.1.1->-r requirements-dev.txt (line 2)) (6.0.1)
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Requirement already satisfied: rsa==4.0 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from pennsieve==6.1.1->-r requirements-dev.txt (line 2)) (4.0)
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Requirement already satisfied: docopt>=0.6 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from pennsieve==6.1.1->-r requirements-dev.txt (line 2)) (0.6.2)
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Requirement already satisfied: six<2.0 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from python-jose==3.2.0->pennsieve==6.1.1->-r requirements-dev.txt (line 2)) (1.13.0)
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Requirement already satisfied: pyasn1 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from python-jose==3.2.0->pennsieve==6.1.1->-r requirements-dev.txt (line 2)) (0.6.0)
Collecting click>=8.0.0 (from black->-r requirements-dev.txt (line 3))
  Using cached click-8.1.7-py3-none-any.whl.metadata (3.0 kB)
Requirement already satisfied: mypy-extensions>=0.4.3 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from black->-r requirements-dev.txt (line 3)) (1.0.0)
Requirement already satisfied: pathspec>=0.9.0 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from black->-r requirements-dev.txt (line 3)) (0.12.1)
Requirement already satisfied: platformdirs>=2 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from black->-r requirements-dev.txt (line 3)) (4.2.0)
Requirement already satisfied: tomli>=1.1.0 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from black->-r requirements-dev.txt (line 3)) (2.0.1)
Requirement already satisfied: typing-extensions>=4.0.1 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from black->-r requirements-dev.txt (line 3)) (4.11.0)
Requirement already satisfied: wrapt<2,>=1.10 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from deprecated>=1.2.0->pennsieve==6.1.1->-r requirements-dev.txt (line 2)) (1.16.0)
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Requirement already satisfied: urllib3<1.27,>=1.21.1 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from requests>=2.18->pennsieve==6.1.1->-r requirements-dev.txt (line 2)) (1.26.4)
Requirement already satisfied: certifi>=2017.4.17 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from requests>=2.18->pennsieve==6.1.1->-r requirements-dev.txt (line 2)) (2019.11.28)
Requirement already satisfied: botocore<1.21.0,>=1.20.67 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from boto3->pennsieve==6.1.1->-r requirements-dev.txt (line 2)) (1.20.67)
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Using cached click-8.1.7-py3-none-any.whl (97 kB)
Installing collected packages: click
  Attempting uninstall: click
    Found existing installation: click 7.1.2
    Uninstalling click-7.1.2:
      Successfully uninstalled click-7.1.2
Successfully installed click-8.1.7

[notice] A new release of pip is available: 24.0 -> 24.1.2
[notice] To update, run: pip install --upgrade pip
+ pytest
============================= test session starts ==============================
platform linux -- Python 3.9.19, pytest-5.4.3, py-1.11.0, pluggy-0.13.1
rootdir: /home/cmiss/Jenkins/workspace/SPARC-API-DEV
collected 106 items

tests/test_api.py ..............FFFF.                                    [ 17%]
tests/test_biolucida.py .............                                    [ 30%]
tests/test_dataset_info.py FsFFssFFF..                                   [ 40%]
tests/test_health.py .                                                   [ 41%]
tests/test_monthly_stats.py ......                                       [ 47%]
tests/test_osparc.py ..............                                      [ 60%]
tests/test_pmr.py .........                                              [ 68%]
tests/test_scicrunch.py FFFFFFFFFFFFFFFFFFFFFFFFFFF                      [ 94%]
tests/test_segmentation_info.py ..                                       [ 96%]
tests/test_thumbnails.py ...                                             [ 99%]
tests/test_update_contentful_entries.py .                                [100%]

=================================== FAILURES ===================================
____________________________ test_onto_term_lookup _____________________________

self = <urllib3.connection.HTTPSConnection object at 0x7f7550119760>

    def _new_conn(self):
        """Establish a socket connection and set nodelay settings on it.
    
        :return: New socket connection.
        """
        extra_kw = {}
        if self.source_address:
            extra_kw["source_address"] = self.source_address
    
        if self.socket_options:
            extra_kw["socket_options"] = self.socket_options
    
        try:
>           conn = connection.create_connection(
                (self._dns_host, self.port), self.timeout, **extra_kw
            )

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connection.py:169: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

address = ('scicrunch.org', 443), timeout = None, source_address = None
socket_options = [(6, 1, 1)]

    def create_connection(
        address,
        timeout=socket._GLOBAL_DEFAULT_TIMEOUT,
        source_address=None,
        socket_options=None,
    ):
        """Connect to *address* and return the socket object.
    
        Convenience function.  Connect to *address* (a 2-tuple ``(host,
        port)``) and return the socket object.  Passing the optional
        *timeout* parameter will set the timeout on the socket instance
        before attempting to connect.  If no *timeout* is supplied, the
        global default timeout setting returned by :func:`socket.getdefaulttimeout`
        is used.  If *source_address* is set it must be a tuple of (host, port)
        for the socket to bind as a source address before making the connection.
        An host of '' or port 0 tells the OS to use the default.
        """
    
        host, port = address
        if host.startswith("["):
            host = host.strip("[]")
        err = None
    
        # Using the value from allowed_gai_family() in the context of getaddrinfo lets
        # us select whether to work with IPv4 DNS records, IPv6 records, or both.
        # The original create_connection function always returns all records.
        family = allowed_gai_family()
    
        try:
            host.encode("idna")
        except UnicodeError:
            return six.raise_from(
                LocationParseError(u"'%s', label empty or too long" % host), None
            )
    
        for res in socket.getaddrinfo(host, port, family, socket.SOCK_STREAM):
            af, socktype, proto, canonname, sa = res
            sock = None
            try:
                sock = socket.socket(af, socktype, proto)
    
                # If provided, set socket level options before connecting.
                _set_socket_options(sock, socket_options)
    
                if timeout is not socket._GLOBAL_DEFAULT_TIMEOUT:
                    sock.settimeout(timeout)
                if source_address:
                    sock.bind(source_address)
                sock.connect(sa)
                return sock
    
            except socket.error as e:
                err = e
                if sock is not None:
                    sock.close()
                    sock = None
    
        if err is not None:
>           raise err

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/util/connection.py:96: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

address = ('scicrunch.org', 443), timeout = None, source_address = None
socket_options = [(6, 1, 1)]

    def create_connection(
        address,
        timeout=socket._GLOBAL_DEFAULT_TIMEOUT,
        source_address=None,
        socket_options=None,
    ):
        """Connect to *address* and return the socket object.
    
        Convenience function.  Connect to *address* (a 2-tuple ``(host,
        port)``) and return the socket object.  Passing the optional
        *timeout* parameter will set the timeout on the socket instance
        before attempting to connect.  If no *timeout* is supplied, the
        global default timeout setting returned by :func:`socket.getdefaulttimeout`
        is used.  If *source_address* is set it must be a tuple of (host, port)
        for the socket to bind as a source address before making the connection.
        An host of '' or port 0 tells the OS to use the default.
        """
    
        host, port = address
        if host.startswith("["):
            host = host.strip("[]")
        err = None
    
        # Using the value from allowed_gai_family() in the context of getaddrinfo lets
        # us select whether to work with IPv4 DNS records, IPv6 records, or both.
        # The original create_connection function always returns all records.
        family = allowed_gai_family()
    
        try:
            host.encode("idna")
        except UnicodeError:
            return six.raise_from(
                LocationParseError(u"'%s', label empty or too long" % host), None
            )
    
        for res in socket.getaddrinfo(host, port, family, socket.SOCK_STREAM):
            af, socktype, proto, canonname, sa = res
            sock = None
            try:
                sock = socket.socket(af, socktype, proto)
    
                # If provided, set socket level options before connecting.
                _set_socket_options(sock, socket_options)
    
                if timeout is not socket._GLOBAL_DEFAULT_TIMEOUT:
                    sock.settimeout(timeout)
                if source_address:
                    sock.bind(source_address)
>               sock.connect(sa)
E               TimeoutError: [Errno 110] Connection timed out

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/util/connection.py:86: TimeoutError

During handling of the above exception, another exception occurred:

self = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f7550119310>
method = 'GET'
url = '/api/1/elastic/Interlex_pr/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf'
body = b'{"size": 10, "from": 0, "query": {"bool": {"must": [{"match_phrase": {"existing_ids.iri": {"query": "http://purl.obolibrary.org/obo/NCBITaxon_9606"}}}]}}}'
headers = {'User-Agent': 'python-requests/2.25.1', 'Accept-Encoding': 'gzip, deflate', 'Accept': 'application/json', 'Connection': 'keep-alive', 'Content-Length': '154', 'Content-Type': 'application/json'}
retries = Retry(total=0, connect=None, read=False, redirect=None, status=None)
redirect = False, assert_same_host = False
timeout = Timeout(connect=None, read=None, total=None), pool_timeout = None
release_conn = False, chunked = False, body_pos = None
response_kw = {'decode_content': False, 'preload_content': False}
parsed_url = Url(scheme=None, auth=None, host=None, port=None, path='/api/1/elastic/Interlex_pr/_search', query='api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf', fragment=None)
destination_scheme = None, conn = None, release_this_conn = True
http_tunnel_required = False, err = None, clean_exit = False

    def urlopen(
        self,
        method,
        url,
        body=None,
        headers=None,
        retries=None,
        redirect=True,
        assert_same_host=True,
        timeout=_Default,
        pool_timeout=None,
        release_conn=None,
        chunked=False,
        body_pos=None,
        **response_kw
    ):
        """
        Get a connection from the pool and perform an HTTP request. This is the
        lowest level call for making a request, so you'll need to specify all
        the raw details.
    
        .. note::
    
           More commonly, it's appropriate to use a convenience method provided
           by :class:`.RequestMethods`, such as :meth:`request`.
    
        .. note::
    
           `release_conn` will only behave as expected if
           `preload_content=False` because we want to make
           `preload_content=False` the default behaviour someday soon without
           breaking backwards compatibility.
    
        :param method:
            HTTP request method (such as GET, POST, PUT, etc.)
    
        :param url:
            The URL to perform the request on.
    
        :param body:
            Data to send in the request body, either :class:`str`, :class:`bytes`,
            an iterable of :class:`str`/:class:`bytes`, or a file-like object.
    
        :param headers:
            Dictionary of custom headers to send, such as User-Agent,
            If-None-Match, etc. If None, pool headers are used. If provided,
            these headers completely replace any pool-specific headers.
    
        :param retries:
            Configure the number of retries to allow before raising a
            :class:`~urllib3.exceptions.MaxRetryError` exception.
    
            Pass ``None`` to retry until you receive a response. Pass a
            :class:`~urllib3.util.retry.Retry` object for fine-grained control
            over different types of retries.
            Pass an integer number to retry connection errors that many times,
            but no other types of errors. Pass zero to never retry.
    
            If ``False``, then retries are disabled and any exception is raised
            immediately. Also, instead of raising a MaxRetryError on redirects,
            the redirect response will be returned.
    
        :type retries: :class:`~urllib3.util.retry.Retry`, False, or an int.
    
        :param redirect:
            If True, automatically handle redirects (status codes 301, 302,
            303, 307, 308). Each redirect counts as a retry. Disabling retries
            will disable redirect, too.
    
        :param assert_same_host:
            If ``True``, will make sure that the host of the pool requests is
            consistent else will raise HostChangedError. When ``False``, you can
            use the pool on an HTTP proxy and request foreign hosts.
    
        :param timeout:
            If specified, overrides the default timeout for this one
            request. It may be a float (in seconds) or an instance of
            :class:`urllib3.util.Timeout`.
    
        :param pool_timeout:
            If set and the pool is set to block=True, then this method will
            block for ``pool_timeout`` seconds and raise EmptyPoolError if no
            connection is available within the time period.
    
        :param release_conn:
            If False, then the urlopen call will not release the connection
            back into the pool once a response is received (but will release if
            you read the entire contents of the response such as when
            `preload_content=True`). This is useful if you're not preloading
            the response's content immediately. You will need to call
            ``r.release_conn()`` on the response ``r`` to return the connection
            back into the pool. If None, it takes the value of
            ``response_kw.get('preload_content', True)``.
    
        :param chunked:
            If True, urllib3 will send the body using chunked transfer
            encoding. Otherwise, urllib3 will send the body using the standard
            content-length form. Defaults to False.
    
        :param int body_pos:
            Position to seek to in file-like body in the event of a retry or
            redirect. Typically this won't need to be set because urllib3 will
            auto-populate the value when needed.
    
        :param \\**response_kw:
            Additional parameters are passed to
            :meth:`urllib3.response.HTTPResponse.from_httplib`
        """
    
        parsed_url = parse_url(url)
        destination_scheme = parsed_url.scheme
    
        if headers is None:
            headers = self.headers
    
        if not isinstance(retries, Retry):
            retries = Retry.from_int(retries, redirect=redirect, default=self.retries)
    
        if release_conn is None:
            release_conn = response_kw.get("preload_content", True)
    
        # Check host
        if assert_same_host and not self.is_same_host(url):
            raise HostChangedError(self, url, retries)
    
        # Ensure that the URL we're connecting to is properly encoded
        if url.startswith("/"):
            url = six.ensure_str(_encode_target(url))
        else:
            url = six.ensure_str(parsed_url.url)
    
        conn = None
    
        # Track whether `conn` needs to be released before
        # returning/raising/recursing. Update this variable if necessary, and
        # leave `release_conn` constant throughout the function. That way, if
        # the function recurses, the original value of `release_conn` will be
        # passed down into the recursive call, and its value will be respected.
        #
        # See issue #651 [1] for details.
        #
        # [1] <https://github.com/urllib3/urllib3/issues/651>
        release_this_conn = release_conn
    
        http_tunnel_required = connection_requires_http_tunnel(
            self.proxy, self.proxy_config, destination_scheme
        )
    
        # Merge the proxy headers. Only done when not using HTTP CONNECT. We
        # have to copy the headers dict so we can safely change it without those
        # changes being reflected in anyone else's copy.
        if not http_tunnel_required:
            headers = headers.copy()
            headers.update(self.proxy_headers)
    
        # Must keep the exception bound to a separate variable or else Python 3
        # complains about UnboundLocalError.
        err = None
    
        # Keep track of whether we cleanly exited the except block. This
        # ensures we do proper cleanup in finally.
        clean_exit = False
    
        # Rewind body position, if needed. Record current position
        # for future rewinds in the event of a redirect/retry.
        body_pos = set_file_position(body, body_pos)
    
        try:
            # Request a connection from the queue.
            timeout_obj = self._get_timeout(timeout)
            conn = self._get_conn(timeout=pool_timeout)
    
            conn.timeout = timeout_obj.connect_timeout
    
            is_new_proxy_conn = self.proxy is not None and not getattr(
                conn, "sock", None
            )
            if is_new_proxy_conn and http_tunnel_required:
                self._prepare_proxy(conn)
    
            # Make the request on the httplib connection object.
>           httplib_response = self._make_request(
                conn,
                method,
                url,
                timeout=timeout_obj,
                body=body,
                headers=headers,
                chunked=chunked,
            )

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py:699: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f7550119310>
conn = <urllib3.connection.HTTPSConnection object at 0x7f7550119760>
method = 'GET'
url = '/api/1/elastic/Interlex_pr/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf'
timeout = Timeout(connect=None, read=None, total=None), chunked = False
httplib_request_kw = {'body': b'{"size": 10, "from": 0, "query": {"bool": {"must": [{"match_phrase": {"existing_ids.iri": {"query": "http:/...'Accept': 'application/json', 'Connection': 'keep-alive', 'Content-Length': '154', 'Content-Type': 'application/json'}}
timeout_obj = Timeout(connect=None, read=None, total=None)

    def _make_request(
        self, conn, method, url, timeout=_Default, chunked=False, **httplib_request_kw
    ):
        """
        Perform a request on a given urllib connection object taken from our
        pool.
    
        :param conn:
            a connection from one of our connection pools
    
        :param timeout:
            Socket timeout in seconds for the request. This can be a
            float or integer, which will set the same timeout value for
            the socket connect and the socket read, or an instance of
            :class:`urllib3.util.Timeout`, which gives you more fine-grained
            control over your timeouts.
        """
        self.num_requests += 1
    
        timeout_obj = self._get_timeout(timeout)
        timeout_obj.start_connect()
        conn.timeout = timeout_obj.connect_timeout
    
        # Trigger any extra validation we need to do.
        try:
>           self._validate_conn(conn)

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py:382: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f7550119310>
conn = <urllib3.connection.HTTPSConnection object at 0x7f7550119760>

    def _validate_conn(self, conn):
        """
        Called right before a request is made, after the socket is created.
        """
        super(HTTPSConnectionPool, self)._validate_conn(conn)
    
        # Force connect early to allow us to validate the connection.
        if not getattr(conn, "sock", None):  # AppEngine might not have  `.sock`
>           conn.connect()

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py:1010: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connection.HTTPSConnection object at 0x7f7550119760>

    def connect(self):
        # Add certificate verification
>       conn = self._new_conn()

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connection.py:353: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connection.HTTPSConnection object at 0x7f7550119760>

    def _new_conn(self):
        """Establish a socket connection and set nodelay settings on it.
    
        :return: New socket connection.
        """
        extra_kw = {}
        if self.source_address:
            extra_kw["source_address"] = self.source_address
    
        if self.socket_options:
            extra_kw["socket_options"] = self.socket_options
    
        try:
            conn = connection.create_connection(
                (self._dns_host, self.port), self.timeout, **extra_kw
            )
    
        except SocketTimeout:
            raise ConnectTimeoutError(
                self,
                "Connection to %s timed out. (connect timeout=%s)"
                % (self.host, self.timeout),
            )
    
        except SocketError as e:
>           raise NewConnectionError(
                self, "Failed to establish a new connection: %s" % e
            )
E           urllib3.exceptions.NewConnectionError: <urllib3.connection.HTTPSConnection object at 0x7f7550119760>: Failed to establish a new connection: [Errno 110] Connection timed out

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connection.py:181: NewConnectionError

During handling of the above exception, another exception occurred:

self = <requests.adapters.HTTPAdapter object at 0x7f755010c670>
request = <PreparedRequest [GET]>, stream = False
timeout = Timeout(connect=None, read=None, total=None), verify = True
cert = None, proxies = OrderedDict()

    def send(self, request, stream=False, timeout=None, verify=True, cert=None, proxies=None):
        """Sends PreparedRequest object. Returns Response object.
    
        :param request: The :class:`PreparedRequest <PreparedRequest>` being sent.
        :param stream: (optional) Whether to stream the request content.
        :param timeout: (optional) How long to wait for the server to send
            data before giving up, as a float, or a :ref:`(connect timeout,
            read timeout) <timeouts>` tuple.
        :type timeout: float or tuple or urllib3 Timeout object
        :param verify: (optional) Either a boolean, in which case it controls whether
            we verify the server's TLS certificate, or a string, in which case it
            must be a path to a CA bundle to use
        :param cert: (optional) Any user-provided SSL certificate to be trusted.
        :param proxies: (optional) The proxies dictionary to apply to the request.
        :rtype: requests.Response
        """
    
        try:
            conn = self.get_connection(request.url, proxies)
        except LocationValueError as e:
            raise InvalidURL(e, request=request)
    
        self.cert_verify(conn, request.url, verify, cert)
        url = self.request_url(request, proxies)
        self.add_headers(request, stream=stream, timeout=timeout, verify=verify, cert=cert, proxies=proxies)
    
        chunked = not (request.body is None or 'Content-Length' in request.headers)
    
        if isinstance(timeout, tuple):
            try:
                connect, read = timeout
                timeout = TimeoutSauce(connect=connect, read=read)
            except ValueError as e:
                # this may raise a string formatting error.
                err = ("Invalid timeout {}. Pass a (connect, read) "
                       "timeout tuple, or a single float to set "
                       "both timeouts to the same value".format(timeout))
                raise ValueError(err)
        elif isinstance(timeout, TimeoutSauce):
            pass
        else:
            timeout = TimeoutSauce(connect=timeout, read=timeout)
    
        try:
            if not chunked:
>               resp = conn.urlopen(
                    method=request.method,
                    url=url,
                    body=request.body,
                    headers=request.headers,
                    redirect=False,
                    assert_same_host=False,
                    preload_content=False,
                    decode_content=False,
                    retries=self.max_retries,
                    timeout=timeout
                )

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/adapters.py:439: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f7550119310>
method = 'GET'
url = '/api/1/elastic/Interlex_pr/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf'
body = b'{"size": 10, "from": 0, "query": {"bool": {"must": [{"match_phrase": {"existing_ids.iri": {"query": "http://purl.obolibrary.org/obo/NCBITaxon_9606"}}}]}}}'
headers = {'User-Agent': 'python-requests/2.25.1', 'Accept-Encoding': 'gzip, deflate', 'Accept': 'application/json', 'Connection': 'keep-alive', 'Content-Length': '154', 'Content-Type': 'application/json'}
retries = Retry(total=0, connect=None, read=False, redirect=None, status=None)
redirect = False, assert_same_host = False
timeout = Timeout(connect=None, read=None, total=None), pool_timeout = None
release_conn = False, chunked = False, body_pos = None
response_kw = {'decode_content': False, 'preload_content': False}
parsed_url = Url(scheme=None, auth=None, host=None, port=None, path='/api/1/elastic/Interlex_pr/_search', query='api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf', fragment=None)
destination_scheme = None, conn = None, release_this_conn = True
http_tunnel_required = False, err = None, clean_exit = False

    def urlopen(
        self,
        method,
        url,
        body=None,
        headers=None,
        retries=None,
        redirect=True,
        assert_same_host=True,
        timeout=_Default,
        pool_timeout=None,
        release_conn=None,
        chunked=False,
        body_pos=None,
        **response_kw
    ):
        """
        Get a connection from the pool and perform an HTTP request. This is the
        lowest level call for making a request, so you'll need to specify all
        the raw details.
    
        .. note::
    
           More commonly, it's appropriate to use a convenience method provided
           by :class:`.RequestMethods`, such as :meth:`request`.
    
        .. note::
    
           `release_conn` will only behave as expected if
           `preload_content=False` because we want to make
           `preload_content=False` the default behaviour someday soon without
           breaking backwards compatibility.
    
        :param method:
            HTTP request method (such as GET, POST, PUT, etc.)
    
        :param url:
            The URL to perform the request on.
    
        :param body:
            Data to send in the request body, either :class:`str`, :class:`bytes`,
            an iterable of :class:`str`/:class:`bytes`, or a file-like object.
    
        :param headers:
            Dictionary of custom headers to send, such as User-Agent,
            If-None-Match, etc. If None, pool headers are used. If provided,
            these headers completely replace any pool-specific headers.
    
        :param retries:
            Configure the number of retries to allow before raising a
            :class:`~urllib3.exceptions.MaxRetryError` exception.
    
            Pass ``None`` to retry until you receive a response. Pass a
            :class:`~urllib3.util.retry.Retry` object for fine-grained control
            over different types of retries.
            Pass an integer number to retry connection errors that many times,
            but no other types of errors. Pass zero to never retry.
    
            If ``False``, then retries are disabled and any exception is raised
            immediately. Also, instead of raising a MaxRetryError on redirects,
            the redirect response will be returned.
    
        :type retries: :class:`~urllib3.util.retry.Retry`, False, or an int.
    
        :param redirect:
            If True, automatically handle redirects (status codes 301, 302,
            303, 307, 308). Each redirect counts as a retry. Disabling retries
            will disable redirect, too.
    
        :param assert_same_host:
            If ``True``, will make sure that the host of the pool requests is
            consistent else will raise HostChangedError. When ``False``, you can
            use the pool on an HTTP proxy and request foreign hosts.
    
        :param timeout:
            If specified, overrides the default timeout for this one
            request. It may be a float (in seconds) or an instance of
            :class:`urllib3.util.Timeout`.
    
        :param pool_timeout:
            If set and the pool is set to block=True, then this method will
            block for ``pool_timeout`` seconds and raise EmptyPoolError if no
            connection is available within the time period.
    
        :param release_conn:
            If False, then the urlopen call will not release the connection
            back into the pool once a response is received (but will release if
            you read the entire contents of the response such as when
            `preload_content=True`). This is useful if you're not preloading
            the response's content immediately. You will need to call
            ``r.release_conn()`` on the response ``r`` to return the connection
            back into the pool. If None, it takes the value of
            ``response_kw.get('preload_content', True)``.
    
        :param chunked:
            If True, urllib3 will send the body using chunked transfer
            encoding. Otherwise, urllib3 will send the body using the standard
            content-length form. Defaults to False.
    
        :param int body_pos:
            Position to seek to in file-like body in the event of a retry or
            redirect. Typically this won't need to be set because urllib3 will
            auto-populate the value when needed.
    
        :param \\**response_kw:
            Additional parameters are passed to
            :meth:`urllib3.response.HTTPResponse.from_httplib`
        """
    
        parsed_url = parse_url(url)
        destination_scheme = parsed_url.scheme
    
        if headers is None:
            headers = self.headers
    
        if not isinstance(retries, Retry):
            retries = Retry.from_int(retries, redirect=redirect, default=self.retries)
    
        if release_conn is None:
            release_conn = response_kw.get("preload_content", True)
    
        # Check host
        if assert_same_host and not self.is_same_host(url):
            raise HostChangedError(self, url, retries)
    
        # Ensure that the URL we're connecting to is properly encoded
        if url.startswith("/"):
            url = six.ensure_str(_encode_target(url))
        else:
            url = six.ensure_str(parsed_url.url)
    
        conn = None
    
        # Track whether `conn` needs to be released before
        # returning/raising/recursing. Update this variable if necessary, and
        # leave `release_conn` constant throughout the function. That way, if
        # the function recurses, the original value of `release_conn` will be
        # passed down into the recursive call, and its value will be respected.
        #
        # See issue #651 [1] for details.
        #
        # [1] <https://github.com/urllib3/urllib3/issues/651>
        release_this_conn = release_conn
    
        http_tunnel_required = connection_requires_http_tunnel(
            self.proxy, self.proxy_config, destination_scheme
        )
    
        # Merge the proxy headers. Only done when not using HTTP CONNECT. We
        # have to copy the headers dict so we can safely change it without those
        # changes being reflected in anyone else's copy.
        if not http_tunnel_required:
            headers = headers.copy()
            headers.update(self.proxy_headers)
    
        # Must keep the exception bound to a separate variable or else Python 3
        # complains about UnboundLocalError.
        err = None
    
        # Keep track of whether we cleanly exited the except block. This
        # ensures we do proper cleanup in finally.
        clean_exit = False
    
        # Rewind body position, if needed. Record current position
        # for future rewinds in the event of a redirect/retry.
        body_pos = set_file_position(body, body_pos)
    
        try:
            # Request a connection from the queue.
            timeout_obj = self._get_timeout(timeout)
            conn = self._get_conn(timeout=pool_timeout)
    
            conn.timeout = timeout_obj.connect_timeout
    
            is_new_proxy_conn = self.proxy is not None and not getattr(
                conn, "sock", None
            )
            if is_new_proxy_conn and http_tunnel_required:
                self._prepare_proxy(conn)
    
            # Make the request on the httplib connection object.
            httplib_response = self._make_request(
                conn,
                method,
                url,
                timeout=timeout_obj,
                body=body,
                headers=headers,
                chunked=chunked,
            )
    
            # If we're going to release the connection in ``finally:``, then
            # the response doesn't need to know about the connection. Otherwise
            # it will also try to release it and we'll have a double-release
            # mess.
            response_conn = conn if not release_conn else None
    
            # Pass method to Response for length checking
            response_kw["request_method"] = method
    
            # Import httplib's response into our own wrapper object
            response = self.ResponseCls.from_httplib(
                httplib_response,
                pool=self,
                connection=response_conn,
                retries=retries,
                **response_kw
            )
    
            # Everything went great!
            clean_exit = True
    
        except EmptyPoolError:
            # Didn't get a connection from the pool, no need to clean up
            clean_exit = True
            release_this_conn = False
            raise
    
        except (
            TimeoutError,
            HTTPException,
            SocketError,
            ProtocolError,
            BaseSSLError,
            SSLError,
            CertificateError,
        ) as e:
            # Discard the connection for these exceptions. It will be
            # replaced during the next _get_conn() call.
            clean_exit = False
            if isinstance(e, (BaseSSLError, CertificateError)):
                e = SSLError(e)
            elif isinstance(e, (SocketError, NewConnectionError)) and self.proxy:
                e = ProxyError("Cannot connect to proxy.", e)
            elif isinstance(e, (SocketError, HTTPException)):
                e = ProtocolError("Connection aborted.", e)
    
>           retries = retries.increment(
                method, url, error=e, _pool=self, _stacktrace=sys.exc_info()[2]
            )

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py:755: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = Retry(total=0, connect=None, read=False, redirect=None, status=None)
method = 'GET'
url = '/api/1/elastic/Interlex_pr/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf'
response = None
error = NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7f7550119760>: Failed to establish a new connection: [Errno 110] Connection timed out')
_pool = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f7550119310>
_stacktrace = <traceback object at 0x7f7550067e00>

    def increment(
        self,
        method=None,
        url=None,
        response=None,
        error=None,
        _pool=None,
        _stacktrace=None,
    ):
        """Return a new Retry object with incremented retry counters.
    
        :param response: A response object, or None, if the server did not
            return a response.
        :type response: :class:`~urllib3.response.HTTPResponse`
        :param Exception error: An error encountered during the request, or
            None if the response was received successfully.
    
        :return: A new ``Retry`` object.
        """
        if self.total is False and error:
            # Disabled, indicate to re-raise the error.
            raise six.reraise(type(error), error, _stacktrace)
    
        total = self.total
        if total is not None:
            total -= 1
    
        connect = self.connect
        read = self.read
        redirect = self.redirect
        status_count = self.status
        other = self.other
        cause = "unknown"
        status = None
        redirect_location = None
    
        if error and self._is_connection_error(error):
            # Connect retry?
            if connect is False:
                raise six.reraise(type(error), error, _stacktrace)
            elif connect is not None:
                connect -= 1
    
        elif error and self._is_read_error(error):
            # Read retry?
            if read is False or not self._is_method_retryable(method):
                raise six.reraise(type(error), error, _stacktrace)
            elif read is not None:
                read -= 1
    
        elif error:
            # Other retry?
            if other is not None:
                other -= 1
    
        elif response and response.get_redirect_location():
            # Redirect retry?
            if redirect is not None:
                redirect -= 1
            cause = "too many redirects"
            redirect_location = response.get_redirect_location()
            status = response.status
    
        else:
            # Incrementing because of a server error like a 500 in
            # status_forcelist and the given method is in the allowed_methods
            cause = ResponseError.GENERIC_ERROR
            if response and response.status:
                if status_count is not None:
                    status_count -= 1
                cause = ResponseError.SPECIFIC_ERROR.format(status_code=response.status)
                status = response.status
    
        history = self.history + (
            RequestHistory(method, url, error, status, redirect_location),
        )
    
        new_retry = self.new(
            total=total,
            connect=connect,
            read=read,
            redirect=redirect,
            status=status_count,
            other=other,
            history=history,
        )
    
        if new_retry.is_exhausted():
>           raise MaxRetryError(_pool, url, error or ResponseError(cause))
E           urllib3.exceptions.MaxRetryError: HTTPSConnectionPool(host='scicrunch.org', port=443): Max retries exceeded with url: /api/1/elastic/Interlex_pr/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7f7550119760>: Failed to establish a new connection: [Errno 110] Connection timed out'))

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/util/retry.py:574: MaxRetryError

During handling of the above exception, another exception occurred:

client = <FlaskClient <Flask 'app.main'>>

    def test_onto_term_lookup(client):
>       r = client.get('/onto_term_lookup', query_string={'term': 'http://purl.obolibrary.org/obo/NCBITaxon_9606'})

tests/test_api.py:193: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/werkzeug/test.py:1029: in get
    return self.open(*args, **kw)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/testing.py:222: in open
    return Client.open(
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/werkzeug/test.py:993: in open
    response = self.run_wsgi_app(environ.copy(), buffered=buffered)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/werkzeug/test.py:884: in run_wsgi_app
    rv = run_wsgi_app(self.application, environ, buffered=buffered)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/werkzeug/test.py:1119: in run_wsgi_app
    app_rv = app(environ, start_response)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:2463: in __call__
    return self.wsgi_app(environ, start_response)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:2449: in wsgi_app
    response = self.handle_exception(e)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask_cors/extension.py:161: in wrapped_function
    return cors_after_request(app.make_response(f(*args, **kwargs)))
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1866: in handle_exception
    reraise(exc_type, exc_value, tb)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/_compat.py:39: in reraise
    raise value
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:2446: in wsgi_app
    response = self.full_dispatch_request()
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1951: in full_dispatch_request
    rv = self.handle_user_exception(e)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask_cors/extension.py:161: in wrapped_function
    return cors_after_request(app.make_response(f(*args, **kwargs)))
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1820: in handle_user_exception
    reraise(exc_type, exc_value, tb)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/_compat.py:39: in reraise
    raise value
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1949: in full_dispatch_request
    rv = self.dispatch_request()
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1935: in dispatch_request
    return self.view_functions[rule.endpoint](**req.view_args)
app/main.py:1449: in find_by_onto_term
    response = requests.get(f'{Config.SCI_CRUNCH_INTERLEX_HOST}/_search', headers=headers, params=params, json=query)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/api.py:76: in get
    return request('get', url, params=params, **kwargs)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/api.py:61: in request
    return session.request(method=method, url=url, **kwargs)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/sessions.py:542: in request
    resp = self.send(prep, **send_kwargs)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/sessions.py:655: in send
    r = adapter.send(request, **kwargs)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <requests.adapters.HTTPAdapter object at 0x7f755010c670>
request = <PreparedRequest [GET]>, stream = False
timeout = Timeout(connect=None, read=None, total=None), verify = True
cert = None, proxies = OrderedDict()

    def send(self, request, stream=False, timeout=None, verify=True, cert=None, proxies=None):
        """Sends PreparedRequest object. Returns Response object.
    
        :param request: The :class:`PreparedRequest <PreparedRequest>` being sent.
        :param stream: (optional) Whether to stream the request content.
        :param timeout: (optional) How long to wait for the server to send
            data before giving up, as a float, or a :ref:`(connect timeout,
            read timeout) <timeouts>` tuple.
        :type timeout: float or tuple or urllib3 Timeout object
        :param verify: (optional) Either a boolean, in which case it controls whether
            we verify the server's TLS certificate, or a string, in which case it
            must be a path to a CA bundle to use
        :param cert: (optional) Any user-provided SSL certificate to be trusted.
        :param proxies: (optional) The proxies dictionary to apply to the request.
        :rtype: requests.Response
        """
    
        try:
            conn = self.get_connection(request.url, proxies)
        except LocationValueError as e:
            raise InvalidURL(e, request=request)
    
        self.cert_verify(conn, request.url, verify, cert)
        url = self.request_url(request, proxies)
        self.add_headers(request, stream=stream, timeout=timeout, verify=verify, cert=cert, proxies=proxies)
    
        chunked = not (request.body is None or 'Content-Length' in request.headers)
    
        if isinstance(timeout, tuple):
            try:
                connect, read = timeout
                timeout = TimeoutSauce(connect=connect, read=read)
            except ValueError as e:
                # this may raise a string formatting error.
                err = ("Invalid timeout {}. Pass a (connect, read) "
                       "timeout tuple, or a single float to set "
                       "both timeouts to the same value".format(timeout))
                raise ValueError(err)
        elif isinstance(timeout, TimeoutSauce):
            pass
        else:
            timeout = TimeoutSauce(connect=timeout, read=timeout)
    
        try:
            if not chunked:
                resp = conn.urlopen(
                    method=request.method,
                    url=url,
                    body=request.body,
                    headers=request.headers,
                    redirect=False,
                    assert_same_host=False,
                    preload_content=False,
                    decode_content=False,
                    retries=self.max_retries,
                    timeout=timeout
                )
    
            # Send the request.
            else:
                if hasattr(conn, 'proxy_pool'):
                    conn = conn.proxy_pool
    
                low_conn = conn._get_conn(timeout=DEFAULT_POOL_TIMEOUT)
    
                try:
                    low_conn.putrequest(request.method,
                                        url,
                                        skip_accept_encoding=True)
    
                    for header, value in request.headers.items():
                        low_conn.putheader(header, value)
    
                    low_conn.endheaders()
    
                    for i in request.body:
                        low_conn.send(hex(len(i))[2:].encode('utf-8'))
                        low_conn.send(b'\r\n')
                        low_conn.send(i)
                        low_conn.send(b'\r\n')
                    low_conn.send(b'0\r\n\r\n')
    
                    # Receive the response from the server
                    try:
                        # For Python 2.7, use buffering of HTTP responses
                        r = low_conn.getresponse(buffering=True)
                    except TypeError:
                        # For compatibility with Python 3.3+
                        r = low_conn.getresponse()
    
                    resp = HTTPResponse.from_httplib(
                        r,
                        pool=conn,
                        connection=low_conn,
                        preload_content=False,
                        decode_content=False
                    )
                except:
                    # If we hit any problems here, clean up the connection.
                    # Then, reraise so that we can handle the actual exception.
                    low_conn.close()
                    raise
    
        except (ProtocolError, socket.error) as err:
            raise ConnectionError(err, request=request)
    
        except MaxRetryError as e:
            if isinstance(e.reason, ConnectTimeoutError):
                # TODO: Remove this in 3.0.0: see #2811
                if not isinstance(e.reason, NewConnectionError):
                    raise ConnectTimeout(e, request=request)
    
            if isinstance(e.reason, ResponseError):
                raise RetryError(e, request=request)
    
            if isinstance(e.reason, _ProxyError):
                raise ProxyError(e, request=request)
    
            if isinstance(e.reason, _SSLError):
                # This branch is for urllib3 v1.22 and later.
                raise SSLError(e, request=request)
    
>           raise ConnectionError(e, request=request)
E           requests.exceptions.ConnectionError: HTTPSConnectionPool(host='scicrunch.org', port=443): Max retries exceeded with url: /api/1/elastic/Interlex_pr/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7f7550119760>: Failed to establish a new connection: [Errno 110] Connection timed out'))

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/adapters.py:516: ConnectionError
_____________________ test_non_existing_simulation_ui_file _____________________

self = <urllib3.connection.HTTPSConnection object at 0x7f754a8caf10>

    def _new_conn(self):
        """Establish a socket connection and set nodelay settings on it.
    
        :return: New socket connection.
        """
        extra_kw = {}
        if self.source_address:
            extra_kw["source_address"] = self.source_address
    
        if self.socket_options:
            extra_kw["socket_options"] = self.socket_options
    
        try:
>           conn = connection.create_connection(
                (self._dns_host, self.port), self.timeout, **extra_kw
            )

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connection.py:169: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

address = ('scicrunch.org', 443), timeout = None, source_address = None
socket_options = [(6, 1, 1)]

    def create_connection(
        address,
        timeout=socket._GLOBAL_DEFAULT_TIMEOUT,
        source_address=None,
        socket_options=None,
    ):
        """Connect to *address* and return the socket object.
    
        Convenience function.  Connect to *address* (a 2-tuple ``(host,
        port)``) and return the socket object.  Passing the optional
        *timeout* parameter will set the timeout on the socket instance
        before attempting to connect.  If no *timeout* is supplied, the
        global default timeout setting returned by :func:`socket.getdefaulttimeout`
        is used.  If *source_address* is set it must be a tuple of (host, port)
        for the socket to bind as a source address before making the connection.
        An host of '' or port 0 tells the OS to use the default.
        """
    
        host, port = address
        if host.startswith("["):
            host = host.strip("[]")
        err = None
    
        # Using the value from allowed_gai_family() in the context of getaddrinfo lets
        # us select whether to work with IPv4 DNS records, IPv6 records, or both.
        # The original create_connection function always returns all records.
        family = allowed_gai_family()
    
        try:
            host.encode("idna")
        except UnicodeError:
            return six.raise_from(
                LocationParseError(u"'%s', label empty or too long" % host), None
            )
    
        for res in socket.getaddrinfo(host, port, family, socket.SOCK_STREAM):
            af, socktype, proto, canonname, sa = res
            sock = None
            try:
                sock = socket.socket(af, socktype, proto)
    
                # If provided, set socket level options before connecting.
                _set_socket_options(sock, socket_options)
    
                if timeout is not socket._GLOBAL_DEFAULT_TIMEOUT:
                    sock.settimeout(timeout)
                if source_address:
                    sock.bind(source_address)
                sock.connect(sa)
                return sock
    
            except socket.error as e:
                err = e
                if sock is not None:
                    sock.close()
                    sock = None
    
        if err is not None:
>           raise err

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/util/connection.py:96: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

address = ('scicrunch.org', 443), timeout = None, source_address = None
socket_options = [(6, 1, 1)]

    def create_connection(
        address,
        timeout=socket._GLOBAL_DEFAULT_TIMEOUT,
        source_address=None,
        socket_options=None,
    ):
        """Connect to *address* and return the socket object.
    
        Convenience function.  Connect to *address* (a 2-tuple ``(host,
        port)``) and return the socket object.  Passing the optional
        *timeout* parameter will set the timeout on the socket instance
        before attempting to connect.  If no *timeout* is supplied, the
        global default timeout setting returned by :func:`socket.getdefaulttimeout`
        is used.  If *source_address* is set it must be a tuple of (host, port)
        for the socket to bind as a source address before making the connection.
        An host of '' or port 0 tells the OS to use the default.
        """
    
        host, port = address
        if host.startswith("["):
            host = host.strip("[]")
        err = None
    
        # Using the value from allowed_gai_family() in the context of getaddrinfo lets
        # us select whether to work with IPv4 DNS records, IPv6 records, or both.
        # The original create_connection function always returns all records.
        family = allowed_gai_family()
    
        try:
            host.encode("idna")
        except UnicodeError:
            return six.raise_from(
                LocationParseError(u"'%s', label empty or too long" % host), None
            )
    
        for res in socket.getaddrinfo(host, port, family, socket.SOCK_STREAM):
            af, socktype, proto, canonname, sa = res
            sock = None
            try:
                sock = socket.socket(af, socktype, proto)
    
                # If provided, set socket level options before connecting.
                _set_socket_options(sock, socket_options)
    
                if timeout is not socket._GLOBAL_DEFAULT_TIMEOUT:
                    sock.settimeout(timeout)
                if source_address:
                    sock.bind(source_address)
>               sock.connect(sa)
E               TimeoutError: [Errno 110] Connection timed out

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/util/connection.py:86: TimeoutError

During handling of the above exception, another exception occurred:

self = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754a8ad340>
method = 'POST'
url = '/api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf'
body = b'{"query": {"term": {"pennsieve.identifier.aggregate": "137"}}}'
headers = {'User-Agent': 'python-requests/2.25.1', 'Accept-Encoding': 'gzip, deflate', 'Accept': '*/*', 'Connection': 'keep-alive', 'Content-Length': '62', 'Content-Type': 'application/json'}
retries = Retry(total=0, connect=None, read=False, redirect=None, status=None)
redirect = False, assert_same_host = False
timeout = Timeout(connect=None, read=None, total=None), pool_timeout = None
release_conn = False, chunked = False, body_pos = None
response_kw = {'decode_content': False, 'preload_content': False}
parsed_url = Url(scheme=None, auth=None, host=None, port=None, path='/api/1/elastic/SPARC_PortalDatasets_dev/_search', query='api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf', fragment=None)
destination_scheme = None, conn = None, release_this_conn = True
http_tunnel_required = False, err = None, clean_exit = False

    def urlopen(
        self,
        method,
        url,
        body=None,
        headers=None,
        retries=None,
        redirect=True,
        assert_same_host=True,
        timeout=_Default,
        pool_timeout=None,
        release_conn=None,
        chunked=False,
        body_pos=None,
        **response_kw
    ):
        """
        Get a connection from the pool and perform an HTTP request. This is the
        lowest level call for making a request, so you'll need to specify all
        the raw details.
    
        .. note::
    
           More commonly, it's appropriate to use a convenience method provided
           by :class:`.RequestMethods`, such as :meth:`request`.
    
        .. note::
    
           `release_conn` will only behave as expected if
           `preload_content=False` because we want to make
           `preload_content=False` the default behaviour someday soon without
           breaking backwards compatibility.
    
        :param method:
            HTTP request method (such as GET, POST, PUT, etc.)
    
        :param url:
            The URL to perform the request on.
    
        :param body:
            Data to send in the request body, either :class:`str`, :class:`bytes`,
            an iterable of :class:`str`/:class:`bytes`, or a file-like object.
    
        :param headers:
            Dictionary of custom headers to send, such as User-Agent,
            If-None-Match, etc. If None, pool headers are used. If provided,
            these headers completely replace any pool-specific headers.
    
        :param retries:
            Configure the number of retries to allow before raising a
            :class:`~urllib3.exceptions.MaxRetryError` exception.
    
            Pass ``None`` to retry until you receive a response. Pass a
            :class:`~urllib3.util.retry.Retry` object for fine-grained control
            over different types of retries.
            Pass an integer number to retry connection errors that many times,
            but no other types of errors. Pass zero to never retry.
    
            If ``False``, then retries are disabled and any exception is raised
            immediately. Also, instead of raising a MaxRetryError on redirects,
            the redirect response will be returned.
    
        :type retries: :class:`~urllib3.util.retry.Retry`, False, or an int.
    
        :param redirect:
            If True, automatically handle redirects (status codes 301, 302,
            303, 307, 308). Each redirect counts as a retry. Disabling retries
            will disable redirect, too.
    
        :param assert_same_host:
            If ``True``, will make sure that the host of the pool requests is
            consistent else will raise HostChangedError. When ``False``, you can
            use the pool on an HTTP proxy and request foreign hosts.
    
        :param timeout:
            If specified, overrides the default timeout for this one
            request. It may be a float (in seconds) or an instance of
            :class:`urllib3.util.Timeout`.
    
        :param pool_timeout:
            If set and the pool is set to block=True, then this method will
            block for ``pool_timeout`` seconds and raise EmptyPoolError if no
            connection is available within the time period.
    
        :param release_conn:
            If False, then the urlopen call will not release the connection
            back into the pool once a response is received (but will release if
            you read the entire contents of the response such as when
            `preload_content=True`). This is useful if you're not preloading
            the response's content immediately. You will need to call
            ``r.release_conn()`` on the response ``r`` to return the connection
            back into the pool. If None, it takes the value of
            ``response_kw.get('preload_content', True)``.
    
        :param chunked:
            If True, urllib3 will send the body using chunked transfer
            encoding. Otherwise, urllib3 will send the body using the standard
            content-length form. Defaults to False.
    
        :param int body_pos:
            Position to seek to in file-like body in the event of a retry or
            redirect. Typically this won't need to be set because urllib3 will
            auto-populate the value when needed.
    
        :param \\**response_kw:
            Additional parameters are passed to
            :meth:`urllib3.response.HTTPResponse.from_httplib`
        """
    
        parsed_url = parse_url(url)
        destination_scheme = parsed_url.scheme
    
        if headers is None:
            headers = self.headers
    
        if not isinstance(retries, Retry):
            retries = Retry.from_int(retries, redirect=redirect, default=self.retries)
    
        if release_conn is None:
            release_conn = response_kw.get("preload_content", True)
    
        # Check host
        if assert_same_host and not self.is_same_host(url):
            raise HostChangedError(self, url, retries)
    
        # Ensure that the URL we're connecting to is properly encoded
        if url.startswith("/"):
            url = six.ensure_str(_encode_target(url))
        else:
            url = six.ensure_str(parsed_url.url)
    
        conn = None
    
        # Track whether `conn` needs to be released before
        # returning/raising/recursing. Update this variable if necessary, and
        # leave `release_conn` constant throughout the function. That way, if
        # the function recurses, the original value of `release_conn` will be
        # passed down into the recursive call, and its value will be respected.
        #
        # See issue #651 [1] for details.
        #
        # [1] <https://github.com/urllib3/urllib3/issues/651>
        release_this_conn = release_conn
    
        http_tunnel_required = connection_requires_http_tunnel(
            self.proxy, self.proxy_config, destination_scheme
        )
    
        # Merge the proxy headers. Only done when not using HTTP CONNECT. We
        # have to copy the headers dict so we can safely change it without those
        # changes being reflected in anyone else's copy.
        if not http_tunnel_required:
            headers = headers.copy()
            headers.update(self.proxy_headers)
    
        # Must keep the exception bound to a separate variable or else Python 3
        # complains about UnboundLocalError.
        err = None
    
        # Keep track of whether we cleanly exited the except block. This
        # ensures we do proper cleanup in finally.
        clean_exit = False
    
        # Rewind body position, if needed. Record current position
        # for future rewinds in the event of a redirect/retry.
        body_pos = set_file_position(body, body_pos)
    
        try:
            # Request a connection from the queue.
            timeout_obj = self._get_timeout(timeout)
            conn = self._get_conn(timeout=pool_timeout)
    
            conn.timeout = timeout_obj.connect_timeout
    
            is_new_proxy_conn = self.proxy is not None and not getattr(
                conn, "sock", None
            )
            if is_new_proxy_conn and http_tunnel_required:
                self._prepare_proxy(conn)
    
            # Make the request on the httplib connection object.
>           httplib_response = self._make_request(
                conn,
                method,
                url,
                timeout=timeout_obj,
                body=body,
                headers=headers,
                chunked=chunked,
            )

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py:699: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754a8ad340>
conn = <urllib3.connection.HTTPSConnection object at 0x7f754a8caf10>
method = 'POST'
url = '/api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf'
timeout = Timeout(connect=None, read=None, total=None), chunked = False
httplib_request_kw = {'body': b'{"query": {"term": {"pennsieve.identifier.aggregate": "137"}}}', 'headers': {'User-Agent': 'python-requests...ip, deflate', 'Accept': '*/*', 'Connection': 'keep-alive', 'Content-Length': '62', 'Content-Type': 'application/json'}}
timeout_obj = Timeout(connect=None, read=None, total=None)

    def _make_request(
        self, conn, method, url, timeout=_Default, chunked=False, **httplib_request_kw
    ):
        """
        Perform a request on a given urllib connection object taken from our
        pool.
    
        :param conn:
            a connection from one of our connection pools
    
        :param timeout:
            Socket timeout in seconds for the request. This can be a
            float or integer, which will set the same timeout value for
            the socket connect and the socket read, or an instance of
            :class:`urllib3.util.Timeout`, which gives you more fine-grained
            control over your timeouts.
        """
        self.num_requests += 1
    
        timeout_obj = self._get_timeout(timeout)
        timeout_obj.start_connect()
        conn.timeout = timeout_obj.connect_timeout
    
        # Trigger any extra validation we need to do.
        try:
>           self._validate_conn(conn)

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py:382: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754a8ad340>
conn = <urllib3.connection.HTTPSConnection object at 0x7f754a8caf10>

    def _validate_conn(self, conn):
        """
        Called right before a request is made, after the socket is created.
        """
        super(HTTPSConnectionPool, self)._validate_conn(conn)
    
        # Force connect early to allow us to validate the connection.
        if not getattr(conn, "sock", None):  # AppEngine might not have  `.sock`
>           conn.connect()

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py:1010: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connection.HTTPSConnection object at 0x7f754a8caf10>

    def connect(self):
        # Add certificate verification
>       conn = self._new_conn()

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connection.py:353: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connection.HTTPSConnection object at 0x7f754a8caf10>

    def _new_conn(self):
        """Establish a socket connection and set nodelay settings on it.
    
        :return: New socket connection.
        """
        extra_kw = {}
        if self.source_address:
            extra_kw["source_address"] = self.source_address
    
        if self.socket_options:
            extra_kw["socket_options"] = self.socket_options
    
        try:
            conn = connection.create_connection(
                (self._dns_host, self.port), self.timeout, **extra_kw
            )
    
        except SocketTimeout:
            raise ConnectTimeoutError(
                self,
                "Connection to %s timed out. (connect timeout=%s)"
                % (self.host, self.timeout),
            )
    
        except SocketError as e:
>           raise NewConnectionError(
                self, "Failed to establish a new connection: %s" % e
            )
E           urllib3.exceptions.NewConnectionError: <urllib3.connection.HTTPSConnection object at 0x7f754a8caf10>: Failed to establish a new connection: [Errno 110] Connection timed out

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connection.py:181: NewConnectionError

During handling of the above exception, another exception occurred:

self = <requests.adapters.HTTPAdapter object at 0x7f754a8ad5b0>
request = <PreparedRequest [POST]>, stream = False
timeout = Timeout(connect=None, read=None, total=None), verify = True
cert = None, proxies = OrderedDict()

    def send(self, request, stream=False, timeout=None, verify=True, cert=None, proxies=None):
        """Sends PreparedRequest object. Returns Response object.
    
        :param request: The :class:`PreparedRequest <PreparedRequest>` being sent.
        :param stream: (optional) Whether to stream the request content.
        :param timeout: (optional) How long to wait for the server to send
            data before giving up, as a float, or a :ref:`(connect timeout,
            read timeout) <timeouts>` tuple.
        :type timeout: float or tuple or urllib3 Timeout object
        :param verify: (optional) Either a boolean, in which case it controls whether
            we verify the server's TLS certificate, or a string, in which case it
            must be a path to a CA bundle to use
        :param cert: (optional) Any user-provided SSL certificate to be trusted.
        :param proxies: (optional) The proxies dictionary to apply to the request.
        :rtype: requests.Response
        """
    
        try:
            conn = self.get_connection(request.url, proxies)
        except LocationValueError as e:
            raise InvalidURL(e, request=request)
    
        self.cert_verify(conn, request.url, verify, cert)
        url = self.request_url(request, proxies)
        self.add_headers(request, stream=stream, timeout=timeout, verify=verify, cert=cert, proxies=proxies)
    
        chunked = not (request.body is None or 'Content-Length' in request.headers)
    
        if isinstance(timeout, tuple):
            try:
                connect, read = timeout
                timeout = TimeoutSauce(connect=connect, read=read)
            except ValueError as e:
                # this may raise a string formatting error.
                err = ("Invalid timeout {}. Pass a (connect, read) "
                       "timeout tuple, or a single float to set "
                       "both timeouts to the same value".format(timeout))
                raise ValueError(err)
        elif isinstance(timeout, TimeoutSauce):
            pass
        else:
            timeout = TimeoutSauce(connect=timeout, read=timeout)
    
        try:
            if not chunked:
>               resp = conn.urlopen(
                    method=request.method,
                    url=url,
                    body=request.body,
                    headers=request.headers,
                    redirect=False,
                    assert_same_host=False,
                    preload_content=False,
                    decode_content=False,
                    retries=self.max_retries,
                    timeout=timeout
                )

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/adapters.py:439: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754a8ad340>
method = 'POST'
url = '/api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf'
body = b'{"query": {"term": {"pennsieve.identifier.aggregate": "137"}}}'
headers = {'User-Agent': 'python-requests/2.25.1', 'Accept-Encoding': 'gzip, deflate', 'Accept': '*/*', 'Connection': 'keep-alive', 'Content-Length': '62', 'Content-Type': 'application/json'}
retries = Retry(total=0, connect=None, read=False, redirect=None, status=None)
redirect = False, assert_same_host = False
timeout = Timeout(connect=None, read=None, total=None), pool_timeout = None
release_conn = False, chunked = False, body_pos = None
response_kw = {'decode_content': False, 'preload_content': False}
parsed_url = Url(scheme=None, auth=None, host=None, port=None, path='/api/1/elastic/SPARC_PortalDatasets_dev/_search', query='api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf', fragment=None)
destination_scheme = None, conn = None, release_this_conn = True
http_tunnel_required = False, err = None, clean_exit = False

    def urlopen(
        self,
        method,
        url,
        body=None,
        headers=None,
        retries=None,
        redirect=True,
        assert_same_host=True,
        timeout=_Default,
        pool_timeout=None,
        release_conn=None,
        chunked=False,
        body_pos=None,
        **response_kw
    ):
        """
        Get a connection from the pool and perform an HTTP request. This is the
        lowest level call for making a request, so you'll need to specify all
        the raw details.
    
        .. note::
    
           More commonly, it's appropriate to use a convenience method provided
           by :class:`.RequestMethods`, such as :meth:`request`.
    
        .. note::
    
           `release_conn` will only behave as expected if
           `preload_content=False` because we want to make
           `preload_content=False` the default behaviour someday soon without
           breaking backwards compatibility.
    
        :param method:
            HTTP request method (such as GET, POST, PUT, etc.)
    
        :param url:
            The URL to perform the request on.
    
        :param body:
            Data to send in the request body, either :class:`str`, :class:`bytes`,
            an iterable of :class:`str`/:class:`bytes`, or a file-like object.
    
        :param headers:
            Dictionary of custom headers to send, such as User-Agent,
            If-None-Match, etc. If None, pool headers are used. If provided,
            these headers completely replace any pool-specific headers.
    
        :param retries:
            Configure the number of retries to allow before raising a
            :class:`~urllib3.exceptions.MaxRetryError` exception.
    
            Pass ``None`` to retry until you receive a response. Pass a
            :class:`~urllib3.util.retry.Retry` object for fine-grained control
            over different types of retries.
            Pass an integer number to retry connection errors that many times,
            but no other types of errors. Pass zero to never retry.
    
            If ``False``, then retries are disabled and any exception is raised
            immediately. Also, instead of raising a MaxRetryError on redirects,
            the redirect response will be returned.
    
        :type retries: :class:`~urllib3.util.retry.Retry`, False, or an int.
    
        :param redirect:
            If True, automatically handle redirects (status codes 301, 302,
            303, 307, 308). Each redirect counts as a retry. Disabling retries
            will disable redirect, too.
    
        :param assert_same_host:
            If ``True``, will make sure that the host of the pool requests is
            consistent else will raise HostChangedError. When ``False``, you can
            use the pool on an HTTP proxy and request foreign hosts.
    
        :param timeout:
            If specified, overrides the default timeout for this one
            request. It may be a float (in seconds) or an instance of
            :class:`urllib3.util.Timeout`.
    
        :param pool_timeout:
            If set and the pool is set to block=True, then this method will
            block for ``pool_timeout`` seconds and raise EmptyPoolError if no
            connection is available within the time period.
    
        :param release_conn:
            If False, then the urlopen call will not release the connection
            back into the pool once a response is received (but will release if
            you read the entire contents of the response such as when
            `preload_content=True`). This is useful if you're not preloading
            the response's content immediately. You will need to call
            ``r.release_conn()`` on the response ``r`` to return the connection
            back into the pool. If None, it takes the value of
            ``response_kw.get('preload_content', True)``.
    
        :param chunked:
            If True, urllib3 will send the body using chunked transfer
            encoding. Otherwise, urllib3 will send the body using the standard
            content-length form. Defaults to False.
    
        :param int body_pos:
            Position to seek to in file-like body in the event of a retry or
            redirect. Typically this won't need to be set because urllib3 will
            auto-populate the value when needed.
    
        :param \\**response_kw:
            Additional parameters are passed to
            :meth:`urllib3.response.HTTPResponse.from_httplib`
        """
    
        parsed_url = parse_url(url)
        destination_scheme = parsed_url.scheme
    
        if headers is None:
            headers = self.headers
    
        if not isinstance(retries, Retry):
            retries = Retry.from_int(retries, redirect=redirect, default=self.retries)
    
        if release_conn is None:
            release_conn = response_kw.get("preload_content", True)
    
        # Check host
        if assert_same_host and not self.is_same_host(url):
            raise HostChangedError(self, url, retries)
    
        # Ensure that the URL we're connecting to is properly encoded
        if url.startswith("/"):
            url = six.ensure_str(_encode_target(url))
        else:
            url = six.ensure_str(parsed_url.url)
    
        conn = None
    
        # Track whether `conn` needs to be released before
        # returning/raising/recursing. Update this variable if necessary, and
        # leave `release_conn` constant throughout the function. That way, if
        # the function recurses, the original value of `release_conn` will be
        # passed down into the recursive call, and its value will be respected.
        #
        # See issue #651 [1] for details.
        #
        # [1] <https://github.com/urllib3/urllib3/issues/651>
        release_this_conn = release_conn
    
        http_tunnel_required = connection_requires_http_tunnel(
            self.proxy, self.proxy_config, destination_scheme
        )
    
        # Merge the proxy headers. Only done when not using HTTP CONNECT. We
        # have to copy the headers dict so we can safely change it without those
        # changes being reflected in anyone else's copy.
        if not http_tunnel_required:
            headers = headers.copy()
            headers.update(self.proxy_headers)
    
        # Must keep the exception bound to a separate variable or else Python 3
        # complains about UnboundLocalError.
        err = None
    
        # Keep track of whether we cleanly exited the except block. This
        # ensures we do proper cleanup in finally.
        clean_exit = False
    
        # Rewind body position, if needed. Record current position
        # for future rewinds in the event of a redirect/retry.
        body_pos = set_file_position(body, body_pos)
    
        try:
            # Request a connection from the queue.
            timeout_obj = self._get_timeout(timeout)
            conn = self._get_conn(timeout=pool_timeout)
    
            conn.timeout = timeout_obj.connect_timeout
    
            is_new_proxy_conn = self.proxy is not None and not getattr(
                conn, "sock", None
            )
            if is_new_proxy_conn and http_tunnel_required:
                self._prepare_proxy(conn)
    
            # Make the request on the httplib connection object.
            httplib_response = self._make_request(
                conn,
                method,
                url,
                timeout=timeout_obj,
                body=body,
                headers=headers,
                chunked=chunked,
            )
    
            # If we're going to release the connection in ``finally:``, then
            # the response doesn't need to know about the connection. Otherwise
            # it will also try to release it and we'll have a double-release
            # mess.
            response_conn = conn if not release_conn else None
    
            # Pass method to Response for length checking
            response_kw["request_method"] = method
    
            # Import httplib's response into our own wrapper object
            response = self.ResponseCls.from_httplib(
                httplib_response,
                pool=self,
                connection=response_conn,
                retries=retries,
                **response_kw
            )
    
            # Everything went great!
            clean_exit = True
    
        except EmptyPoolError:
            # Didn't get a connection from the pool, no need to clean up
            clean_exit = True
            release_this_conn = False
            raise
    
        except (
            TimeoutError,
            HTTPException,
            SocketError,
            ProtocolError,
            BaseSSLError,
            SSLError,
            CertificateError,
        ) as e:
            # Discard the connection for these exceptions. It will be
            # replaced during the next _get_conn() call.
            clean_exit = False
            if isinstance(e, (BaseSSLError, CertificateError)):
                e = SSLError(e)
            elif isinstance(e, (SocketError, NewConnectionError)) and self.proxy:
                e = ProxyError("Cannot connect to proxy.", e)
            elif isinstance(e, (SocketError, HTTPException)):
                e = ProtocolError("Connection aborted.", e)
    
>           retries = retries.increment(
                method, url, error=e, _pool=self, _stacktrace=sys.exc_info()[2]
            )

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py:755: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = Retry(total=0, connect=None, read=False, redirect=None, status=None)
method = 'POST'
url = '/api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf'
response = None
error = NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7f754a8caf10>: Failed to establish a new connection: [Errno 110] Connection timed out')
_pool = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754a8ad340>
_stacktrace = <traceback object at 0x7f754a899240>

    def increment(
        self,
        method=None,
        url=None,
        response=None,
        error=None,
        _pool=None,
        _stacktrace=None,
    ):
        """Return a new Retry object with incremented retry counters.
    
        :param response: A response object, or None, if the server did not
            return a response.
        :type response: :class:`~urllib3.response.HTTPResponse`
        :param Exception error: An error encountered during the request, or
            None if the response was received successfully.
    
        :return: A new ``Retry`` object.
        """
        if self.total is False and error:
            # Disabled, indicate to re-raise the error.
            raise six.reraise(type(error), error, _stacktrace)
    
        total = self.total
        if total is not None:
            total -= 1
    
        connect = self.connect
        read = self.read
        redirect = self.redirect
        status_count = self.status
        other = self.other
        cause = "unknown"
        status = None
        redirect_location = None
    
        if error and self._is_connection_error(error):
            # Connect retry?
            if connect is False:
                raise six.reraise(type(error), error, _stacktrace)
            elif connect is not None:
                connect -= 1
    
        elif error and self._is_read_error(error):
            # Read retry?
            if read is False or not self._is_method_retryable(method):
                raise six.reraise(type(error), error, _stacktrace)
            elif read is not None:
                read -= 1
    
        elif error:
            # Other retry?
            if other is not None:
                other -= 1
    
        elif response and response.get_redirect_location():
            # Redirect retry?
            if redirect is not None:
                redirect -= 1
            cause = "too many redirects"
            redirect_location = response.get_redirect_location()
            status = response.status
    
        else:
            # Incrementing because of a server error like a 500 in
            # status_forcelist and the given method is in the allowed_methods
            cause = ResponseError.GENERIC_ERROR
            if response and response.status:
                if status_count is not None:
                    status_count -= 1
                cause = ResponseError.SPECIFIC_ERROR.format(status_code=response.status)
                status = response.status
    
        history = self.history + (
            RequestHistory(method, url, error, status, redirect_location),
        )
    
        new_retry = self.new(
            total=total,
            connect=connect,
            read=read,
            redirect=redirect,
            status=status_count,
            other=other,
            history=history,
        )
    
        if new_retry.is_exhausted():
>           raise MaxRetryError(_pool, url, error or ResponseError(cause))
E           urllib3.exceptions.MaxRetryError: HTTPSConnectionPool(host='scicrunch.org', port=443): Max retries exceeded with url: /api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7f754a8caf10>: Failed to establish a new connection: [Errno 110] Connection timed out'))

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/util/retry.py:574: MaxRetryError

During handling of the above exception, another exception occurred:

client = <FlaskClient <Flask 'app.main'>>

    def test_non_existing_simulation_ui_file(client):
>       r = client.get('/simulation_ui_file/137')

tests/test_api.py:200: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/werkzeug/test.py:1029: in get
    return self.open(*args, **kw)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/testing.py:222: in open
    return Client.open(
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/werkzeug/test.py:993: in open
    response = self.run_wsgi_app(environ.copy(), buffered=buffered)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/werkzeug/test.py:884: in run_wsgi_app
    rv = run_wsgi_app(self.application, environ, buffered=buffered)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/werkzeug/test.py:1119: in run_wsgi_app
    app_rv = app(environ, start_response)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:2463: in __call__
    return self.wsgi_app(environ, start_response)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:2449: in wsgi_app
    response = self.handle_exception(e)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask_cors/extension.py:161: in wrapped_function
    return cors_after_request(app.make_response(f(*args, **kwargs)))
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1866: in handle_exception
    reraise(exc_type, exc_value, tb)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/_compat.py:39: in reraise
    raise value
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:2446: in wsgi_app
    response = self.full_dispatch_request()
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1951: in full_dispatch_request
    rv = self.handle_user_exception(e)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask_cors/extension.py:161: in wrapped_function
    return cors_after_request(app.make_response(f(*args, **kwargs)))
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1820: in handle_user_exception
    reraise(exc_type, exc_value, tb)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/_compat.py:39: in reraise
    raise value
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1949: in full_dispatch_request
    rv = self.dispatch_request()
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1935: in dispatch_request
    return self.view_functions[rule.endpoint](**req.view_args)
app/main.py:1358: in simulation_ui_file
    results = process_results(dataset_search(create_pennsieve_identifier_query(identifier)))
app/main.py:663: in dataset_search
    response = requests.post(f'{Config.SCI_CRUNCH_HOST}/_search',
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/api.py:119: in post
    return request('post', url, data=data, json=json, **kwargs)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/api.py:61: in request
    return session.request(method=method, url=url, **kwargs)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/sessions.py:542: in request
    resp = self.send(prep, **send_kwargs)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/sessions.py:655: in send
    r = adapter.send(request, **kwargs)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <requests.adapters.HTTPAdapter object at 0x7f754a8ad5b0>
request = <PreparedRequest [POST]>, stream = False
timeout = Timeout(connect=None, read=None, total=None), verify = True
cert = None, proxies = OrderedDict()

    def send(self, request, stream=False, timeout=None, verify=True, cert=None, proxies=None):
        """Sends PreparedRequest object. Returns Response object.
    
        :param request: The :class:`PreparedRequest <PreparedRequest>` being sent.
        :param stream: (optional) Whether to stream the request content.
        :param timeout: (optional) How long to wait for the server to send
            data before giving up, as a float, or a :ref:`(connect timeout,
            read timeout) <timeouts>` tuple.
        :type timeout: float or tuple or urllib3 Timeout object
        :param verify: (optional) Either a boolean, in which case it controls whether
            we verify the server's TLS certificate, or a string, in which case it
            must be a path to a CA bundle to use
        :param cert: (optional) Any user-provided SSL certificate to be trusted.
        :param proxies: (optional) The proxies dictionary to apply to the request.
        :rtype: requests.Response
        """
    
        try:
            conn = self.get_connection(request.url, proxies)
        except LocationValueError as e:
            raise InvalidURL(e, request=request)
    
        self.cert_verify(conn, request.url, verify, cert)
        url = self.request_url(request, proxies)
        self.add_headers(request, stream=stream, timeout=timeout, verify=verify, cert=cert, proxies=proxies)
    
        chunked = not (request.body is None or 'Content-Length' in request.headers)
    
        if isinstance(timeout, tuple):
            try:
                connect, read = timeout
                timeout = TimeoutSauce(connect=connect, read=read)
            except ValueError as e:
                # this may raise a string formatting error.
                err = ("Invalid timeout {}. Pass a (connect, read) "
                       "timeout tuple, or a single float to set "
                       "both timeouts to the same value".format(timeout))
                raise ValueError(err)
        elif isinstance(timeout, TimeoutSauce):
            pass
        else:
            timeout = TimeoutSauce(connect=timeout, read=timeout)
    
        try:
            if not chunked:
                resp = conn.urlopen(
                    method=request.method,
                    url=url,
                    body=request.body,
                    headers=request.headers,
                    redirect=False,
                    assert_same_host=False,
                    preload_content=False,
                    decode_content=False,
                    retries=self.max_retries,
                    timeout=timeout
                )
    
            # Send the request.
            else:
                if hasattr(conn, 'proxy_pool'):
                    conn = conn.proxy_pool
    
                low_conn = conn._get_conn(timeout=DEFAULT_POOL_TIMEOUT)
    
                try:
                    low_conn.putrequest(request.method,
                                        url,
                                        skip_accept_encoding=True)
    
                    for header, value in request.headers.items():
                        low_conn.putheader(header, value)
    
                    low_conn.endheaders()
    
                    for i in request.body:
                        low_conn.send(hex(len(i))[2:].encode('utf-8'))
                        low_conn.send(b'\r\n')
                        low_conn.send(i)
                        low_conn.send(b'\r\n')
                    low_conn.send(b'0\r\n\r\n')
    
                    # Receive the response from the server
                    try:
                        # For Python 2.7, use buffering of HTTP responses
                        r = low_conn.getresponse(buffering=True)
                    except TypeError:
                        # For compatibility with Python 3.3+
                        r = low_conn.getresponse()
    
                    resp = HTTPResponse.from_httplib(
                        r,
                        pool=conn,
                        connection=low_conn,
                        preload_content=False,
                        decode_content=False
                    )
                except:
                    # If we hit any problems here, clean up the connection.
                    # Then, reraise so that we can handle the actual exception.
                    low_conn.close()
                    raise
    
        except (ProtocolError, socket.error) as err:
            raise ConnectionError(err, request=request)
    
        except MaxRetryError as e:
            if isinstance(e.reason, ConnectTimeoutError):
                # TODO: Remove this in 3.0.0: see #2811
                if not isinstance(e.reason, NewConnectionError):
                    raise ConnectTimeout(e, request=request)
    
            if isinstance(e.reason, ResponseError):
                raise RetryError(e, request=request)
    
            if isinstance(e.reason, _ProxyError):
                raise ProxyError(e, request=request)
    
            if isinstance(e.reason, _SSLError):
                # This branch is for urllib3 v1.22 and later.
                raise SSLError(e, request=request)
    
>           raise ConnectionError(e, request=request)
E           requests.exceptions.ConnectionError: HTTPSConnectionPool(host='scicrunch.org', port=443): Max retries exceeded with url: /api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7f754a8caf10>: Failed to establish a new connection: [Errno 110] Connection timed out'))

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/adapters.py:516: ConnectionError
____________________ test_simulation_ui_file_old_s3_bucket _____________________

self = <urllib3.connection.HTTPSConnection object at 0x7f754ac94520>

    def _new_conn(self):
        """Establish a socket connection and set nodelay settings on it.
    
        :return: New socket connection.
        """
        extra_kw = {}
        if self.source_address:
            extra_kw["source_address"] = self.source_address
    
        if self.socket_options:
            extra_kw["socket_options"] = self.socket_options
    
        try:
>           conn = connection.create_connection(
                (self._dns_host, self.port), self.timeout, **extra_kw
            )

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connection.py:169: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

address = ('scicrunch.org', 443), timeout = None, source_address = None
socket_options = [(6, 1, 1)]

    def create_connection(
        address,
        timeout=socket._GLOBAL_DEFAULT_TIMEOUT,
        source_address=None,
        socket_options=None,
    ):
        """Connect to *address* and return the socket object.
    
        Convenience function.  Connect to *address* (a 2-tuple ``(host,
        port)``) and return the socket object.  Passing the optional
        *timeout* parameter will set the timeout on the socket instance
        before attempting to connect.  If no *timeout* is supplied, the
        global default timeout setting returned by :func:`socket.getdefaulttimeout`
        is used.  If *source_address* is set it must be a tuple of (host, port)
        for the socket to bind as a source address before making the connection.
        An host of '' or port 0 tells the OS to use the default.
        """
    
        host, port = address
        if host.startswith("["):
            host = host.strip("[]")
        err = None
    
        # Using the value from allowed_gai_family() in the context of getaddrinfo lets
        # us select whether to work with IPv4 DNS records, IPv6 records, or both.
        # The original create_connection function always returns all records.
        family = allowed_gai_family()
    
        try:
            host.encode("idna")
        except UnicodeError:
            return six.raise_from(
                LocationParseError(u"'%s', label empty or too long" % host), None
            )
    
        for res in socket.getaddrinfo(host, port, family, socket.SOCK_STREAM):
            af, socktype, proto, canonname, sa = res
            sock = None
            try:
                sock = socket.socket(af, socktype, proto)
    
                # If provided, set socket level options before connecting.
                _set_socket_options(sock, socket_options)
    
                if timeout is not socket._GLOBAL_DEFAULT_TIMEOUT:
                    sock.settimeout(timeout)
                if source_address:
                    sock.bind(source_address)
                sock.connect(sa)
                return sock
    
            except socket.error as e:
                err = e
                if sock is not None:
                    sock.close()
                    sock = None
    
        if err is not None:
>           raise err

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/util/connection.py:96: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

address = ('scicrunch.org', 443), timeout = None, source_address = None
socket_options = [(6, 1, 1)]

    def create_connection(
        address,
        timeout=socket._GLOBAL_DEFAULT_TIMEOUT,
        source_address=None,
        socket_options=None,
    ):
        """Connect to *address* and return the socket object.
    
        Convenience function.  Connect to *address* (a 2-tuple ``(host,
        port)``) and return the socket object.  Passing the optional
        *timeout* parameter will set the timeout on the socket instance
        before attempting to connect.  If no *timeout* is supplied, the
        global default timeout setting returned by :func:`socket.getdefaulttimeout`
        is used.  If *source_address* is set it must be a tuple of (host, port)
        for the socket to bind as a source address before making the connection.
        An host of '' or port 0 tells the OS to use the default.
        """
    
        host, port = address
        if host.startswith("["):
            host = host.strip("[]")
        err = None
    
        # Using the value from allowed_gai_family() in the context of getaddrinfo lets
        # us select whether to work with IPv4 DNS records, IPv6 records, or both.
        # The original create_connection function always returns all records.
        family = allowed_gai_family()
    
        try:
            host.encode("idna")
        except UnicodeError:
            return six.raise_from(
                LocationParseError(u"'%s', label empty or too long" % host), None
            )
    
        for res in socket.getaddrinfo(host, port, family, socket.SOCK_STREAM):
            af, socktype, proto, canonname, sa = res
            sock = None
            try:
                sock = socket.socket(af, socktype, proto)
    
                # If provided, set socket level options before connecting.
                _set_socket_options(sock, socket_options)
    
                if timeout is not socket._GLOBAL_DEFAULT_TIMEOUT:
                    sock.settimeout(timeout)
                if source_address:
                    sock.bind(source_address)
>               sock.connect(sa)
E               TimeoutError: [Errno 110] Connection timed out

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/util/connection.py:86: TimeoutError

During handling of the above exception, another exception occurred:

self = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754ab75be0>
method = 'POST'
url = '/api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf'
body = b'{"query": {"term": {"pennsieve.identifier.aggregate": "135"}}}'
headers = {'User-Agent': 'python-requests/2.25.1', 'Accept-Encoding': 'gzip, deflate', 'Accept': '*/*', 'Connection': 'keep-alive', 'Content-Length': '62', 'Content-Type': 'application/json'}
retries = Retry(total=0, connect=None, read=False, redirect=None, status=None)
redirect = False, assert_same_host = False
timeout = Timeout(connect=None, read=None, total=None), pool_timeout = None
release_conn = False, chunked = False, body_pos = None
response_kw = {'decode_content': False, 'preload_content': False}
parsed_url = Url(scheme=None, auth=None, host=None, port=None, path='/api/1/elastic/SPARC_PortalDatasets_dev/_search', query='api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf', fragment=None)
destination_scheme = None, conn = None, release_this_conn = True
http_tunnel_required = False, err = None, clean_exit = False

    def urlopen(
        self,
        method,
        url,
        body=None,
        headers=None,
        retries=None,
        redirect=True,
        assert_same_host=True,
        timeout=_Default,
        pool_timeout=None,
        release_conn=None,
        chunked=False,
        body_pos=None,
        **response_kw
    ):
        """
        Get a connection from the pool and perform an HTTP request. This is the
        lowest level call for making a request, so you'll need to specify all
        the raw details.
    
        .. note::
    
           More commonly, it's appropriate to use a convenience method provided
           by :class:`.RequestMethods`, such as :meth:`request`.
    
        .. note::
    
           `release_conn` will only behave as expected if
           `preload_content=False` because we want to make
           `preload_content=False` the default behaviour someday soon without
           breaking backwards compatibility.
    
        :param method:
            HTTP request method (such as GET, POST, PUT, etc.)
    
        :param url:
            The URL to perform the request on.
    
        :param body:
            Data to send in the request body, either :class:`str`, :class:`bytes`,
            an iterable of :class:`str`/:class:`bytes`, or a file-like object.
    
        :param headers:
            Dictionary of custom headers to send, such as User-Agent,
            If-None-Match, etc. If None, pool headers are used. If provided,
            these headers completely replace any pool-specific headers.
    
        :param retries:
            Configure the number of retries to allow before raising a
            :class:`~urllib3.exceptions.MaxRetryError` exception.
    
            Pass ``None`` to retry until you receive a response. Pass a
            :class:`~urllib3.util.retry.Retry` object for fine-grained control
            over different types of retries.
            Pass an integer number to retry connection errors that many times,
            but no other types of errors. Pass zero to never retry.
    
            If ``False``, then retries are disabled and any exception is raised
            immediately. Also, instead of raising a MaxRetryError on redirects,
            the redirect response will be returned.
    
        :type retries: :class:`~urllib3.util.retry.Retry`, False, or an int.
    
        :param redirect:
            If True, automatically handle redirects (status codes 301, 302,
            303, 307, 308). Each redirect counts as a retry. Disabling retries
            will disable redirect, too.
    
        :param assert_same_host:
            If ``True``, will make sure that the host of the pool requests is
            consistent else will raise HostChangedError. When ``False``, you can
            use the pool on an HTTP proxy and request foreign hosts.
    
        :param timeout:
            If specified, overrides the default timeout for this one
            request. It may be a float (in seconds) or an instance of
            :class:`urllib3.util.Timeout`.
    
        :param pool_timeout:
            If set and the pool is set to block=True, then this method will
            block for ``pool_timeout`` seconds and raise EmptyPoolError if no
            connection is available within the time period.
    
        :param release_conn:
            If False, then the urlopen call will not release the connection
            back into the pool once a response is received (but will release if
            you read the entire contents of the response such as when
            `preload_content=True`). This is useful if you're not preloading
            the response's content immediately. You will need to call
            ``r.release_conn()`` on the response ``r`` to return the connection
            back into the pool. If None, it takes the value of
            ``response_kw.get('preload_content', True)``.
    
        :param chunked:
            If True, urllib3 will send the body using chunked transfer
            encoding. Otherwise, urllib3 will send the body using the standard
            content-length form. Defaults to False.
    
        :param int body_pos:
            Position to seek to in file-like body in the event of a retry or
            redirect. Typically this won't need to be set because urllib3 will
            auto-populate the value when needed.
    
        :param \\**response_kw:
            Additional parameters are passed to
            :meth:`urllib3.response.HTTPResponse.from_httplib`
        """
    
        parsed_url = parse_url(url)
        destination_scheme = parsed_url.scheme
    
        if headers is None:
            headers = self.headers
    
        if not isinstance(retries, Retry):
            retries = Retry.from_int(retries, redirect=redirect, default=self.retries)
    
        if release_conn is None:
            release_conn = response_kw.get("preload_content", True)
    
        # Check host
        if assert_same_host and not self.is_same_host(url):
            raise HostChangedError(self, url, retries)
    
        # Ensure that the URL we're connecting to is properly encoded
        if url.startswith("/"):
            url = six.ensure_str(_encode_target(url))
        else:
            url = six.ensure_str(parsed_url.url)
    
        conn = None
    
        # Track whether `conn` needs to be released before
        # returning/raising/recursing. Update this variable if necessary, and
        # leave `release_conn` constant throughout the function. That way, if
        # the function recurses, the original value of `release_conn` will be
        # passed down into the recursive call, and its value will be respected.
        #
        # See issue #651 [1] for details.
        #
        # [1] <https://github.com/urllib3/urllib3/issues/651>
        release_this_conn = release_conn
    
        http_tunnel_required = connection_requires_http_tunnel(
            self.proxy, self.proxy_config, destination_scheme
        )
    
        # Merge the proxy headers. Only done when not using HTTP CONNECT. We
        # have to copy the headers dict so we can safely change it without those
        # changes being reflected in anyone else's copy.
        if not http_tunnel_required:
            headers = headers.copy()
            headers.update(self.proxy_headers)
    
        # Must keep the exception bound to a separate variable or else Python 3
        # complains about UnboundLocalError.
        err = None
    
        # Keep track of whether we cleanly exited the except block. This
        # ensures we do proper cleanup in finally.
        clean_exit = False
    
        # Rewind body position, if needed. Record current position
        # for future rewinds in the event of a redirect/retry.
        body_pos = set_file_position(body, body_pos)
    
        try:
            # Request a connection from the queue.
            timeout_obj = self._get_timeout(timeout)
            conn = self._get_conn(timeout=pool_timeout)
    
            conn.timeout = timeout_obj.connect_timeout
    
            is_new_proxy_conn = self.proxy is not None and not getattr(
                conn, "sock", None
            )
            if is_new_proxy_conn and http_tunnel_required:
                self._prepare_proxy(conn)
    
            # Make the request on the httplib connection object.
>           httplib_response = self._make_request(
                conn,
                method,
                url,
                timeout=timeout_obj,
                body=body,
                headers=headers,
                chunked=chunked,
            )

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py:699: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754ab75be0>
conn = <urllib3.connection.HTTPSConnection object at 0x7f754ac94520>
method = 'POST'
url = '/api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf'
timeout = Timeout(connect=None, read=None, total=None), chunked = False
httplib_request_kw = {'body': b'{"query": {"term": {"pennsieve.identifier.aggregate": "135"}}}', 'headers': {'User-Agent': 'python-requests...ip, deflate', 'Accept': '*/*', 'Connection': 'keep-alive', 'Content-Length': '62', 'Content-Type': 'application/json'}}
timeout_obj = Timeout(connect=None, read=None, total=None)

    def _make_request(
        self, conn, method, url, timeout=_Default, chunked=False, **httplib_request_kw
    ):
        """
        Perform a request on a given urllib connection object taken from our
        pool.
    
        :param conn:
            a connection from one of our connection pools
    
        :param timeout:
            Socket timeout in seconds for the request. This can be a
            float or integer, which will set the same timeout value for
            the socket connect and the socket read, or an instance of
            :class:`urllib3.util.Timeout`, which gives you more fine-grained
            control over your timeouts.
        """
        self.num_requests += 1
    
        timeout_obj = self._get_timeout(timeout)
        timeout_obj.start_connect()
        conn.timeout = timeout_obj.connect_timeout
    
        # Trigger any extra validation we need to do.
        try:
>           self._validate_conn(conn)

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py:382: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754ab75be0>
conn = <urllib3.connection.HTTPSConnection object at 0x7f754ac94520>

    def _validate_conn(self, conn):
        """
        Called right before a request is made, after the socket is created.
        """
        super(HTTPSConnectionPool, self)._validate_conn(conn)
    
        # Force connect early to allow us to validate the connection.
        if not getattr(conn, "sock", None):  # AppEngine might not have  `.sock`
>           conn.connect()

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py:1010: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connection.HTTPSConnection object at 0x7f754ac94520>

    def connect(self):
        # Add certificate verification
>       conn = self._new_conn()

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connection.py:353: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connection.HTTPSConnection object at 0x7f754ac94520>

    def _new_conn(self):
        """Establish a socket connection and set nodelay settings on it.
    
        :return: New socket connection.
        """
        extra_kw = {}
        if self.source_address:
            extra_kw["source_address"] = self.source_address
    
        if self.socket_options:
            extra_kw["socket_options"] = self.socket_options
    
        try:
            conn = connection.create_connection(
                (self._dns_host, self.port), self.timeout, **extra_kw
            )
    
        except SocketTimeout:
            raise ConnectTimeoutError(
                self,
                "Connection to %s timed out. (connect timeout=%s)"
                % (self.host, self.timeout),
            )
    
        except SocketError as e:
>           raise NewConnectionError(
                self, "Failed to establish a new connection: %s" % e
            )
E           urllib3.exceptions.NewConnectionError: <urllib3.connection.HTTPSConnection object at 0x7f754ac94520>: Failed to establish a new connection: [Errno 110] Connection timed out

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connection.py:181: NewConnectionError

During handling of the above exception, another exception occurred:

self = <requests.adapters.HTTPAdapter object at 0x7f754ab75df0>
request = <PreparedRequest [POST]>, stream = False
timeout = Timeout(connect=None, read=None, total=None), verify = True
cert = None, proxies = OrderedDict()

    def send(self, request, stream=False, timeout=None, verify=True, cert=None, proxies=None):
        """Sends PreparedRequest object. Returns Response object.
    
        :param request: The :class:`PreparedRequest <PreparedRequest>` being sent.
        :param stream: (optional) Whether to stream the request content.
        :param timeout: (optional) How long to wait for the server to send
            data before giving up, as a float, or a :ref:`(connect timeout,
            read timeout) <timeouts>` tuple.
        :type timeout: float or tuple or urllib3 Timeout object
        :param verify: (optional) Either a boolean, in which case it controls whether
            we verify the server's TLS certificate, or a string, in which case it
            must be a path to a CA bundle to use
        :param cert: (optional) Any user-provided SSL certificate to be trusted.
        :param proxies: (optional) The proxies dictionary to apply to the request.
        :rtype: requests.Response
        """
    
        try:
            conn = self.get_connection(request.url, proxies)
        except LocationValueError as e:
            raise InvalidURL(e, request=request)
    
        self.cert_verify(conn, request.url, verify, cert)
        url = self.request_url(request, proxies)
        self.add_headers(request, stream=stream, timeout=timeout, verify=verify, cert=cert, proxies=proxies)
    
        chunked = not (request.body is None or 'Content-Length' in request.headers)
    
        if isinstance(timeout, tuple):
            try:
                connect, read = timeout
                timeout = TimeoutSauce(connect=connect, read=read)
            except ValueError as e:
                # this may raise a string formatting error.
                err = ("Invalid timeout {}. Pass a (connect, read) "
                       "timeout tuple, or a single float to set "
                       "both timeouts to the same value".format(timeout))
                raise ValueError(err)
        elif isinstance(timeout, TimeoutSauce):
            pass
        else:
            timeout = TimeoutSauce(connect=timeout, read=timeout)
    
        try:
            if not chunked:
>               resp = conn.urlopen(
                    method=request.method,
                    url=url,
                    body=request.body,
                    headers=request.headers,
                    redirect=False,
                    assert_same_host=False,
                    preload_content=False,
                    decode_content=False,
                    retries=self.max_retries,
                    timeout=timeout
                )

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/adapters.py:439: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754ab75be0>
method = 'POST'
url = '/api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf'
body = b'{"query": {"term": {"pennsieve.identifier.aggregate": "135"}}}'
headers = {'User-Agent': 'python-requests/2.25.1', 'Accept-Encoding': 'gzip, deflate', 'Accept': '*/*', 'Connection': 'keep-alive', 'Content-Length': '62', 'Content-Type': 'application/json'}
retries = Retry(total=0, connect=None, read=False, redirect=None, status=None)
redirect = False, assert_same_host = False
timeout = Timeout(connect=None, read=None, total=None), pool_timeout = None
release_conn = False, chunked = False, body_pos = None
response_kw = {'decode_content': False, 'preload_content': False}
parsed_url = Url(scheme=None, auth=None, host=None, port=None, path='/api/1/elastic/SPARC_PortalDatasets_dev/_search', query='api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf', fragment=None)
destination_scheme = None, conn = None, release_this_conn = True
http_tunnel_required = False, err = None, clean_exit = False

    def urlopen(
        self,
        method,
        url,
        body=None,
        headers=None,
        retries=None,
        redirect=True,
        assert_same_host=True,
        timeout=_Default,
        pool_timeout=None,
        release_conn=None,
        chunked=False,
        body_pos=None,
        **response_kw
    ):
        """
        Get a connection from the pool and perform an HTTP request. This is the
        lowest level call for making a request, so you'll need to specify all
        the raw details.
    
        .. note::
    
           More commonly, it's appropriate to use a convenience method provided
           by :class:`.RequestMethods`, such as :meth:`request`.
    
        .. note::
    
           `release_conn` will only behave as expected if
           `preload_content=False` because we want to make
           `preload_content=False` the default behaviour someday soon without
           breaking backwards compatibility.
    
        :param method:
            HTTP request method (such as GET, POST, PUT, etc.)
    
        :param url:
            The URL to perform the request on.
    
        :param body:
            Data to send in the request body, either :class:`str`, :class:`bytes`,
            an iterable of :class:`str`/:class:`bytes`, or a file-like object.
    
        :param headers:
            Dictionary of custom headers to send, such as User-Agent,
            If-None-Match, etc. If None, pool headers are used. If provided,
            these headers completely replace any pool-specific headers.
    
        :param retries:
            Configure the number of retries to allow before raising a
            :class:`~urllib3.exceptions.MaxRetryError` exception.
    
            Pass ``None`` to retry until you receive a response. Pass a
            :class:`~urllib3.util.retry.Retry` object for fine-grained control
            over different types of retries.
            Pass an integer number to retry connection errors that many times,
            but no other types of errors. Pass zero to never retry.
    
            If ``False``, then retries are disabled and any exception is raised
            immediately. Also, instead of raising a MaxRetryError on redirects,
            the redirect response will be returned.
    
        :type retries: :class:`~urllib3.util.retry.Retry`, False, or an int.
    
        :param redirect:
            If True, automatically handle redirects (status codes 301, 302,
            303, 307, 308). Each redirect counts as a retry. Disabling retries
            will disable redirect, too.
    
        :param assert_same_host:
            If ``True``, will make sure that the host of the pool requests is
            consistent else will raise HostChangedError. When ``False``, you can
            use the pool on an HTTP proxy and request foreign hosts.
    
        :param timeout:
            If specified, overrides the default timeout for this one
            request. It may be a float (in seconds) or an instance of
            :class:`urllib3.util.Timeout`.
    
        :param pool_timeout:
            If set and the pool is set to block=True, then this method will
            block for ``pool_timeout`` seconds and raise EmptyPoolError if no
            connection is available within the time period.
    
        :param release_conn:
            If False, then the urlopen call will not release the connection
            back into the pool once a response is received (but will release if
            you read the entire contents of the response such as when
            `preload_content=True`). This is useful if you're not preloading
            the response's content immediately. You will need to call
            ``r.release_conn()`` on the response ``r`` to return the connection
            back into the pool. If None, it takes the value of
            ``response_kw.get('preload_content', True)``.
    
        :param chunked:
            If True, urllib3 will send the body using chunked transfer
            encoding. Otherwise, urllib3 will send the body using the standard
            content-length form. Defaults to False.
    
        :param int body_pos:
            Position to seek to in file-like body in the event of a retry or
            redirect. Typically this won't need to be set because urllib3 will
            auto-populate the value when needed.
    
        :param \\**response_kw:
            Additional parameters are passed to
            :meth:`urllib3.response.HTTPResponse.from_httplib`
        """
    
        parsed_url = parse_url(url)
        destination_scheme = parsed_url.scheme
    
        if headers is None:
            headers = self.headers
    
        if not isinstance(retries, Retry):
            retries = Retry.from_int(retries, redirect=redirect, default=self.retries)
    
        if release_conn is None:
            release_conn = response_kw.get("preload_content", True)
    
        # Check host
        if assert_same_host and not self.is_same_host(url):
            raise HostChangedError(self, url, retries)
    
        # Ensure that the URL we're connecting to is properly encoded
        if url.startswith("/"):
            url = six.ensure_str(_encode_target(url))
        else:
            url = six.ensure_str(parsed_url.url)
    
        conn = None
    
        # Track whether `conn` needs to be released before
        # returning/raising/recursing. Update this variable if necessary, and
        # leave `release_conn` constant throughout the function. That way, if
        # the function recurses, the original value of `release_conn` will be
        # passed down into the recursive call, and its value will be respected.
        #
        # See issue #651 [1] for details.
        #
        # [1] <https://github.com/urllib3/urllib3/issues/651>
        release_this_conn = release_conn
    
        http_tunnel_required = connection_requires_http_tunnel(
            self.proxy, self.proxy_config, destination_scheme
        )
    
        # Merge the proxy headers. Only done when not using HTTP CONNECT. We
        # have to copy the headers dict so we can safely change it without those
        # changes being reflected in anyone else's copy.
        if not http_tunnel_required:
            headers = headers.copy()
            headers.update(self.proxy_headers)
    
        # Must keep the exception bound to a separate variable or else Python 3
        # complains about UnboundLocalError.
        err = None
    
        # Keep track of whether we cleanly exited the except block. This
        # ensures we do proper cleanup in finally.
        clean_exit = False
    
        # Rewind body position, if needed. Record current position
        # for future rewinds in the event of a redirect/retry.
        body_pos = set_file_position(body, body_pos)
    
        try:
            # Request a connection from the queue.
            timeout_obj = self._get_timeout(timeout)
            conn = self._get_conn(timeout=pool_timeout)
    
            conn.timeout = timeout_obj.connect_timeout
    
            is_new_proxy_conn = self.proxy is not None and not getattr(
                conn, "sock", None
            )
            if is_new_proxy_conn and http_tunnel_required:
                self._prepare_proxy(conn)
    
            # Make the request on the httplib connection object.
            httplib_response = self._make_request(
                conn,
                method,
                url,
                timeout=timeout_obj,
                body=body,
                headers=headers,
                chunked=chunked,
            )
    
            # If we're going to release the connection in ``finally:``, then
            # the response doesn't need to know about the connection. Otherwise
            # it will also try to release it and we'll have a double-release
            # mess.
            response_conn = conn if not release_conn else None
    
            # Pass method to Response for length checking
            response_kw["request_method"] = method
    
            # Import httplib's response into our own wrapper object
            response = self.ResponseCls.from_httplib(
                httplib_response,
                pool=self,
                connection=response_conn,
                retries=retries,
                **response_kw
            )
    
            # Everything went great!
            clean_exit = True
    
        except EmptyPoolError:
            # Didn't get a connection from the pool, no need to clean up
            clean_exit = True
            release_this_conn = False
            raise
    
        except (
            TimeoutError,
            HTTPException,
            SocketError,
            ProtocolError,
            BaseSSLError,
            SSLError,
            CertificateError,
        ) as e:
            # Discard the connection for these exceptions. It will be
            # replaced during the next _get_conn() call.
            clean_exit = False
            if isinstance(e, (BaseSSLError, CertificateError)):
                e = SSLError(e)
            elif isinstance(e, (SocketError, NewConnectionError)) and self.proxy:
                e = ProxyError("Cannot connect to proxy.", e)
            elif isinstance(e, (SocketError, HTTPException)):
                e = ProtocolError("Connection aborted.", e)
    
>           retries = retries.increment(
                method, url, error=e, _pool=self, _stacktrace=sys.exc_info()[2]
            )

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py:755: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = Retry(total=0, connect=None, read=False, redirect=None, status=None)
method = 'POST'
url = '/api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf'
response = None
error = NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7f754ac94520>: Failed to establish a new connection: [Errno 110] Connection timed out')
_pool = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754ab75be0>
_stacktrace = <traceback object at 0x7f754ab3c400>

    def increment(
        self,
        method=None,
        url=None,
        response=None,
        error=None,
        _pool=None,
        _stacktrace=None,
    ):
        """Return a new Retry object with incremented retry counters.
    
        :param response: A response object, or None, if the server did not
            return a response.
        :type response: :class:`~urllib3.response.HTTPResponse`
        :param Exception error: An error encountered during the request, or
            None if the response was received successfully.
    
        :return: A new ``Retry`` object.
        """
        if self.total is False and error:
            # Disabled, indicate to re-raise the error.
            raise six.reraise(type(error), error, _stacktrace)
    
        total = self.total
        if total is not None:
            total -= 1
    
        connect = self.connect
        read = self.read
        redirect = self.redirect
        status_count = self.status
        other = self.other
        cause = "unknown"
        status = None
        redirect_location = None
    
        if error and self._is_connection_error(error):
            # Connect retry?
            if connect is False:
                raise six.reraise(type(error), error, _stacktrace)
            elif connect is not None:
                connect -= 1
    
        elif error and self._is_read_error(error):
            # Read retry?
            if read is False or not self._is_method_retryable(method):
                raise six.reraise(type(error), error, _stacktrace)
            elif read is not None:
                read -= 1
    
        elif error:
            # Other retry?
            if other is not None:
                other -= 1
    
        elif response and response.get_redirect_location():
            # Redirect retry?
            if redirect is not None:
                redirect -= 1
            cause = "too many redirects"
            redirect_location = response.get_redirect_location()
            status = response.status
    
        else:
            # Incrementing because of a server error like a 500 in
            # status_forcelist and the given method is in the allowed_methods
            cause = ResponseError.GENERIC_ERROR
            if response and response.status:
                if status_count is not None:
                    status_count -= 1
                cause = ResponseError.SPECIFIC_ERROR.format(status_code=response.status)
                status = response.status
    
        history = self.history + (
            RequestHistory(method, url, error, status, redirect_location),
        )
    
        new_retry = self.new(
            total=total,
            connect=connect,
            read=read,
            redirect=redirect,
            status=status_count,
            other=other,
            history=history,
        )
    
        if new_retry.is_exhausted():
>           raise MaxRetryError(_pool, url, error or ResponseError(cause))
E           urllib3.exceptions.MaxRetryError: HTTPSConnectionPool(host='scicrunch.org', port=443): Max retries exceeded with url: /api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7f754ac94520>: Failed to establish a new connection: [Errno 110] Connection timed out'))

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/util/retry.py:574: MaxRetryError

During handling of the above exception, another exception occurred:

client = <FlaskClient <Flask 'app.main'>>

    def test_simulation_ui_file_old_s3_bucket(client):
>       r = client.get('/simulation_ui_file/135')

tests/test_api.py:205: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/werkzeug/test.py:1029: in get
    return self.open(*args, **kw)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/testing.py:222: in open
    return Client.open(
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/werkzeug/test.py:993: in open
    response = self.run_wsgi_app(environ.copy(), buffered=buffered)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/werkzeug/test.py:884: in run_wsgi_app
    rv = run_wsgi_app(self.application, environ, buffered=buffered)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/werkzeug/test.py:1119: in run_wsgi_app
    app_rv = app(environ, start_response)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:2463: in __call__
    return self.wsgi_app(environ, start_response)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:2449: in wsgi_app
    response = self.handle_exception(e)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask_cors/extension.py:161: in wrapped_function
    return cors_after_request(app.make_response(f(*args, **kwargs)))
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1866: in handle_exception
    reraise(exc_type, exc_value, tb)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/_compat.py:39: in reraise
    raise value
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:2446: in wsgi_app
    response = self.full_dispatch_request()
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1951: in full_dispatch_request
    rv = self.handle_user_exception(e)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask_cors/extension.py:161: in wrapped_function
    return cors_after_request(app.make_response(f(*args, **kwargs)))
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1820: in handle_user_exception
    reraise(exc_type, exc_value, tb)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/_compat.py:39: in reraise
    raise value
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1949: in full_dispatch_request
    rv = self.dispatch_request()
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1935: in dispatch_request
    return self.view_functions[rule.endpoint](**req.view_args)
app/main.py:1358: in simulation_ui_file
    results = process_results(dataset_search(create_pennsieve_identifier_query(identifier)))
app/main.py:663: in dataset_search
    response = requests.post(f'{Config.SCI_CRUNCH_HOST}/_search',
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/api.py:119: in post
    return request('post', url, data=data, json=json, **kwargs)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/api.py:61: in request
    return session.request(method=method, url=url, **kwargs)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/sessions.py:542: in request
    resp = self.send(prep, **send_kwargs)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/sessions.py:655: in send
    r = adapter.send(request, **kwargs)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <requests.adapters.HTTPAdapter object at 0x7f754ab75df0>
request = <PreparedRequest [POST]>, stream = False
timeout = Timeout(connect=None, read=None, total=None), verify = True
cert = None, proxies = OrderedDict()

    def send(self, request, stream=False, timeout=None, verify=True, cert=None, proxies=None):
        """Sends PreparedRequest object. Returns Response object.
    
        :param request: The :class:`PreparedRequest <PreparedRequest>` being sent.
        :param stream: (optional) Whether to stream the request content.
        :param timeout: (optional) How long to wait for the server to send
            data before giving up, as a float, or a :ref:`(connect timeout,
            read timeout) <timeouts>` tuple.
        :type timeout: float or tuple or urllib3 Timeout object
        :param verify: (optional) Either a boolean, in which case it controls whether
            we verify the server's TLS certificate, or a string, in which case it
            must be a path to a CA bundle to use
        :param cert: (optional) Any user-provided SSL certificate to be trusted.
        :param proxies: (optional) The proxies dictionary to apply to the request.
        :rtype: requests.Response
        """
    
        try:
            conn = self.get_connection(request.url, proxies)
        except LocationValueError as e:
            raise InvalidURL(e, request=request)
    
        self.cert_verify(conn, request.url, verify, cert)
        url = self.request_url(request, proxies)
        self.add_headers(request, stream=stream, timeout=timeout, verify=verify, cert=cert, proxies=proxies)
    
        chunked = not (request.body is None or 'Content-Length' in request.headers)
    
        if isinstance(timeout, tuple):
            try:
                connect, read = timeout
                timeout = TimeoutSauce(connect=connect, read=read)
            except ValueError as e:
                # this may raise a string formatting error.
                err = ("Invalid timeout {}. Pass a (connect, read) "
                       "timeout tuple, or a single float to set "
                       "both timeouts to the same value".format(timeout))
                raise ValueError(err)
        elif isinstance(timeout, TimeoutSauce):
            pass
        else:
            timeout = TimeoutSauce(connect=timeout, read=timeout)
    
        try:
            if not chunked:
                resp = conn.urlopen(
                    method=request.method,
                    url=url,
                    body=request.body,
                    headers=request.headers,
                    redirect=False,
                    assert_same_host=False,
                    preload_content=False,
                    decode_content=False,
                    retries=self.max_retries,
                    timeout=timeout
                )
    
            # Send the request.
            else:
                if hasattr(conn, 'proxy_pool'):
                    conn = conn.proxy_pool
    
                low_conn = conn._get_conn(timeout=DEFAULT_POOL_TIMEOUT)
    
                try:
                    low_conn.putrequest(request.method,
                                        url,
                                        skip_accept_encoding=True)
    
                    for header, value in request.headers.items():
                        low_conn.putheader(header, value)
    
                    low_conn.endheaders()
    
                    for i in request.body:
                        low_conn.send(hex(len(i))[2:].encode('utf-8'))
                        low_conn.send(b'\r\n')
                        low_conn.send(i)
                        low_conn.send(b'\r\n')
                    low_conn.send(b'0\r\n\r\n')
    
                    # Receive the response from the server
                    try:
                        # For Python 2.7, use buffering of HTTP responses
                        r = low_conn.getresponse(buffering=True)
                    except TypeError:
                        # For compatibility with Python 3.3+
                        r = low_conn.getresponse()
    
                    resp = HTTPResponse.from_httplib(
                        r,
                        pool=conn,
                        connection=low_conn,
                        preload_content=False,
                        decode_content=False
                    )
                except:
                    # If we hit any problems here, clean up the connection.
                    # Then, reraise so that we can handle the actual exception.
                    low_conn.close()
                    raise
    
        except (ProtocolError, socket.error) as err:
            raise ConnectionError(err, request=request)
    
        except MaxRetryError as e:
            if isinstance(e.reason, ConnectTimeoutError):
                # TODO: Remove this in 3.0.0: see #2811
                if not isinstance(e.reason, NewConnectionError):
                    raise ConnectTimeout(e, request=request)
    
            if isinstance(e.reason, ResponseError):
                raise RetryError(e, request=request)
    
            if isinstance(e.reason, _ProxyError):
                raise ProxyError(e, request=request)
    
            if isinstance(e.reason, _SSLError):
                # This branch is for urllib3 v1.22 and later.
                raise SSLError(e, request=request)
    
>           raise ConnectionError(e, request=request)
E           requests.exceptions.ConnectionError: HTTPSConnectionPool(host='scicrunch.org', port=443): Max retries exceeded with url: /api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7f754ac94520>: Failed to establish a new connection: [Errno 110] Connection timed out'))

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/adapters.py:516: ConnectionError
____________________ test_simulation_ui_file_new_s3_bucket _____________________

self = <urllib3.connection.HTTPSConnection object at 0x7f754aacd280>

    def _new_conn(self):
        """Establish a socket connection and set nodelay settings on it.
    
        :return: New socket connection.
        """
        extra_kw = {}
        if self.source_address:
            extra_kw["source_address"] = self.source_address
    
        if self.socket_options:
            extra_kw["socket_options"] = self.socket_options
    
        try:
>           conn = connection.create_connection(
                (self._dns_host, self.port), self.timeout, **extra_kw
            )

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connection.py:169: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

address = ('scicrunch.org', 443), timeout = None, source_address = None
socket_options = [(6, 1, 1)]

    def create_connection(
        address,
        timeout=socket._GLOBAL_DEFAULT_TIMEOUT,
        source_address=None,
        socket_options=None,
    ):
        """Connect to *address* and return the socket object.
    
        Convenience function.  Connect to *address* (a 2-tuple ``(host,
        port)``) and return the socket object.  Passing the optional
        *timeout* parameter will set the timeout on the socket instance
        before attempting to connect.  If no *timeout* is supplied, the
        global default timeout setting returned by :func:`socket.getdefaulttimeout`
        is used.  If *source_address* is set it must be a tuple of (host, port)
        for the socket to bind as a source address before making the connection.
        An host of '' or port 0 tells the OS to use the default.
        """
    
        host, port = address
        if host.startswith("["):
            host = host.strip("[]")
        err = None
    
        # Using the value from allowed_gai_family() in the context of getaddrinfo lets
        # us select whether to work with IPv4 DNS records, IPv6 records, or both.
        # The original create_connection function always returns all records.
        family = allowed_gai_family()
    
        try:
            host.encode("idna")
        except UnicodeError:
            return six.raise_from(
                LocationParseError(u"'%s', label empty or too long" % host), None
            )
    
        for res in socket.getaddrinfo(host, port, family, socket.SOCK_STREAM):
            af, socktype, proto, canonname, sa = res
            sock = None
            try:
                sock = socket.socket(af, socktype, proto)
    
                # If provided, set socket level options before connecting.
                _set_socket_options(sock, socket_options)
    
                if timeout is not socket._GLOBAL_DEFAULT_TIMEOUT:
                    sock.settimeout(timeout)
                if source_address:
                    sock.bind(source_address)
                sock.connect(sa)
                return sock
    
            except socket.error as e:
                err = e
                if sock is not None:
                    sock.close()
                    sock = None
    
        if err is not None:
>           raise err

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/util/connection.py:96: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

address = ('scicrunch.org', 443), timeout = None, source_address = None
socket_options = [(6, 1, 1)]

    def create_connection(
        address,
        timeout=socket._GLOBAL_DEFAULT_TIMEOUT,
        source_address=None,
        socket_options=None,
    ):
        """Connect to *address* and return the socket object.
    
        Convenience function.  Connect to *address* (a 2-tuple ``(host,
        port)``) and return the socket object.  Passing the optional
        *timeout* parameter will set the timeout on the socket instance
        before attempting to connect.  If no *timeout* is supplied, the
        global default timeout setting returned by :func:`socket.getdefaulttimeout`
        is used.  If *source_address* is set it must be a tuple of (host, port)
        for the socket to bind as a source address before making the connection.
        An host of '' or port 0 tells the OS to use the default.
        """
    
        host, port = address
        if host.startswith("["):
            host = host.strip("[]")
        err = None
    
        # Using the value from allowed_gai_family() in the context of getaddrinfo lets
        # us select whether to work with IPv4 DNS records, IPv6 records, or both.
        # The original create_connection function always returns all records.
        family = allowed_gai_family()
    
        try:
            host.encode("idna")
        except UnicodeError:
            return six.raise_from(
                LocationParseError(u"'%s', label empty or too long" % host), None
            )
    
        for res in socket.getaddrinfo(host, port, family, socket.SOCK_STREAM):
            af, socktype, proto, canonname, sa = res
            sock = None
            try:
                sock = socket.socket(af, socktype, proto)
    
                # If provided, set socket level options before connecting.
                _set_socket_options(sock, socket_options)
    
                if timeout is not socket._GLOBAL_DEFAULT_TIMEOUT:
                    sock.settimeout(timeout)
                if source_address:
                    sock.bind(source_address)
>               sock.connect(sa)
E               TimeoutError: [Errno 110] Connection timed out

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/util/connection.py:86: TimeoutError

During handling of the above exception, another exception occurred:

self = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754aaca340>
method = 'POST'
url = '/api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf'
body = b'{"query": {"term": {"pennsieve.identifier.aggregate": "308"}}}'
headers = {'User-Agent': 'python-requests/2.25.1', 'Accept-Encoding': 'gzip, deflate', 'Accept': '*/*', 'Connection': 'keep-alive', 'Content-Length': '62', 'Content-Type': 'application/json'}
retries = Retry(total=0, connect=None, read=False, redirect=None, status=None)
redirect = False, assert_same_host = False
timeout = Timeout(connect=None, read=None, total=None), pool_timeout = None
release_conn = False, chunked = False, body_pos = None
response_kw = {'decode_content': False, 'preload_content': False}
parsed_url = Url(scheme=None, auth=None, host=None, port=None, path='/api/1/elastic/SPARC_PortalDatasets_dev/_search', query='api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf', fragment=None)
destination_scheme = None, conn = None, release_this_conn = True
http_tunnel_required = False, err = None, clean_exit = False

    def urlopen(
        self,
        method,
        url,
        body=None,
        headers=None,
        retries=None,
        redirect=True,
        assert_same_host=True,
        timeout=_Default,
        pool_timeout=None,
        release_conn=None,
        chunked=False,
        body_pos=None,
        **response_kw
    ):
        """
        Get a connection from the pool and perform an HTTP request. This is the
        lowest level call for making a request, so you'll need to specify all
        the raw details.
    
        .. note::
    
           More commonly, it's appropriate to use a convenience method provided
           by :class:`.RequestMethods`, such as :meth:`request`.
    
        .. note::
    
           `release_conn` will only behave as expected if
           `preload_content=False` because we want to make
           `preload_content=False` the default behaviour someday soon without
           breaking backwards compatibility.
    
        :param method:
            HTTP request method (such as GET, POST, PUT, etc.)
    
        :param url:
            The URL to perform the request on.
    
        :param body:
            Data to send in the request body, either :class:`str`, :class:`bytes`,
            an iterable of :class:`str`/:class:`bytes`, or a file-like object.
    
        :param headers:
            Dictionary of custom headers to send, such as User-Agent,
            If-None-Match, etc. If None, pool headers are used. If provided,
            these headers completely replace any pool-specific headers.
    
        :param retries:
            Configure the number of retries to allow before raising a
            :class:`~urllib3.exceptions.MaxRetryError` exception.
    
            Pass ``None`` to retry until you receive a response. Pass a
            :class:`~urllib3.util.retry.Retry` object for fine-grained control
            over different types of retries.
            Pass an integer number to retry connection errors that many times,
            but no other types of errors. Pass zero to never retry.
    
            If ``False``, then retries are disabled and any exception is raised
            immediately. Also, instead of raising a MaxRetryError on redirects,
            the redirect response will be returned.
    
        :type retries: :class:`~urllib3.util.retry.Retry`, False, or an int.
    
        :param redirect:
            If True, automatically handle redirects (status codes 301, 302,
            303, 307, 308). Each redirect counts as a retry. Disabling retries
            will disable redirect, too.
    
        :param assert_same_host:
            If ``True``, will make sure that the host of the pool requests is
            consistent else will raise HostChangedError. When ``False``, you can
            use the pool on an HTTP proxy and request foreign hosts.
    
        :param timeout:
            If specified, overrides the default timeout for this one
            request. It may be a float (in seconds) or an instance of
            :class:`urllib3.util.Timeout`.
    
        :param pool_timeout:
            If set and the pool is set to block=True, then this method will
            block for ``pool_timeout`` seconds and raise EmptyPoolError if no
            connection is available within the time period.
    
        :param release_conn:
            If False, then the urlopen call will not release the connection
            back into the pool once a response is received (but will release if
            you read the entire contents of the response such as when
            `preload_content=True`). This is useful if you're not preloading
            the response's content immediately. You will need to call
            ``r.release_conn()`` on the response ``r`` to return the connection
            back into the pool. If None, it takes the value of
            ``response_kw.get('preload_content', True)``.
    
        :param chunked:
            If True, urllib3 will send the body using chunked transfer
            encoding. Otherwise, urllib3 will send the body using the standard
            content-length form. Defaults to False.
    
        :param int body_pos:
            Position to seek to in file-like body in the event of a retry or
            redirect. Typically this won't need to be set because urllib3 will
            auto-populate the value when needed.
    
        :param \\**response_kw:
            Additional parameters are passed to
            :meth:`urllib3.response.HTTPResponse.from_httplib`
        """
    
        parsed_url = parse_url(url)
        destination_scheme = parsed_url.scheme
    
        if headers is None:
            headers = self.headers
    
        if not isinstance(retries, Retry):
            retries = Retry.from_int(retries, redirect=redirect, default=self.retries)
    
        if release_conn is None:
            release_conn = response_kw.get("preload_content", True)
    
        # Check host
        if assert_same_host and not self.is_same_host(url):
            raise HostChangedError(self, url, retries)
    
        # Ensure that the URL we're connecting to is properly encoded
        if url.startswith("/"):
            url = six.ensure_str(_encode_target(url))
        else:
            url = six.ensure_str(parsed_url.url)
    
        conn = None
    
        # Track whether `conn` needs to be released before
        # returning/raising/recursing. Update this variable if necessary, and
        # leave `release_conn` constant throughout the function. That way, if
        # the function recurses, the original value of `release_conn` will be
        # passed down into the recursive call, and its value will be respected.
        #
        # See issue #651 [1] for details.
        #
        # [1] <https://github.com/urllib3/urllib3/issues/651>
        release_this_conn = release_conn
    
        http_tunnel_required = connection_requires_http_tunnel(
            self.proxy, self.proxy_config, destination_scheme
        )
    
        # Merge the proxy headers. Only done when not using HTTP CONNECT. We
        # have to copy the headers dict so we can safely change it without those
        # changes being reflected in anyone else's copy.
        if not http_tunnel_required:
            headers = headers.copy()
            headers.update(self.proxy_headers)
    
        # Must keep the exception bound to a separate variable or else Python 3
        # complains about UnboundLocalError.
        err = None
    
        # Keep track of whether we cleanly exited the except block. This
        # ensures we do proper cleanup in finally.
        clean_exit = False
    
        # Rewind body position, if needed. Record current position
        # for future rewinds in the event of a redirect/retry.
        body_pos = set_file_position(body, body_pos)
    
        try:
            # Request a connection from the queue.
            timeout_obj = self._get_timeout(timeout)
            conn = self._get_conn(timeout=pool_timeout)
    
            conn.timeout = timeout_obj.connect_timeout
    
            is_new_proxy_conn = self.proxy is not None and not getattr(
                conn, "sock", None
            )
            if is_new_proxy_conn and http_tunnel_required:
                self._prepare_proxy(conn)
    
            # Make the request on the httplib connection object.
>           httplib_response = self._make_request(
                conn,
                method,
                url,
                timeout=timeout_obj,
                body=body,
                headers=headers,
                chunked=chunked,
            )

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py:699: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754aaca340>
conn = <urllib3.connection.HTTPSConnection object at 0x7f754aacd280>
method = 'POST'
url = '/api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf'
timeout = Timeout(connect=None, read=None, total=None), chunked = False
httplib_request_kw = {'body': b'{"query": {"term": {"pennsieve.identifier.aggregate": "308"}}}', 'headers': {'User-Agent': 'python-requests...ip, deflate', 'Accept': '*/*', 'Connection': 'keep-alive', 'Content-Length': '62', 'Content-Type': 'application/json'}}
timeout_obj = Timeout(connect=None, read=None, total=None)

    def _make_request(
        self, conn, method, url, timeout=_Default, chunked=False, **httplib_request_kw
    ):
        """
        Perform a request on a given urllib connection object taken from our
        pool.
    
        :param conn:
            a connection from one of our connection pools
    
        :param timeout:
            Socket timeout in seconds for the request. This can be a
            float or integer, which will set the same timeout value for
            the socket connect and the socket read, or an instance of
            :class:`urllib3.util.Timeout`, which gives you more fine-grained
            control over your timeouts.
        """
        self.num_requests += 1
    
        timeout_obj = self._get_timeout(timeout)
        timeout_obj.start_connect()
        conn.timeout = timeout_obj.connect_timeout
    
        # Trigger any extra validation we need to do.
        try:
>           self._validate_conn(conn)

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py:382: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754aaca340>
conn = <urllib3.connection.HTTPSConnection object at 0x7f754aacd280>

    def _validate_conn(self, conn):
        """
        Called right before a request is made, after the socket is created.
        """
        super(HTTPSConnectionPool, self)._validate_conn(conn)
    
        # Force connect early to allow us to validate the connection.
        if not getattr(conn, "sock", None):  # AppEngine might not have  `.sock`
>           conn.connect()

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py:1010: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connection.HTTPSConnection object at 0x7f754aacd280>

    def connect(self):
        # Add certificate verification
>       conn = self._new_conn()

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connection.py:353: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connection.HTTPSConnection object at 0x7f754aacd280>

    def _new_conn(self):
        """Establish a socket connection and set nodelay settings on it.
    
        :return: New socket connection.
        """
        extra_kw = {}
        if self.source_address:
            extra_kw["source_address"] = self.source_address
    
        if self.socket_options:
            extra_kw["socket_options"] = self.socket_options
    
        try:
            conn = connection.create_connection(
                (self._dns_host, self.port), self.timeout, **extra_kw
            )
    
        except SocketTimeout:
            raise ConnectTimeoutError(
                self,
                "Connection to %s timed out. (connect timeout=%s)"
                % (self.host, self.timeout),
            )
    
        except SocketError as e:
>           raise NewConnectionError(
                self, "Failed to establish a new connection: %s" % e
            )
E           urllib3.exceptions.NewConnectionError: <urllib3.connection.HTTPSConnection object at 0x7f754aacd280>: Failed to establish a new connection: [Errno 110] Connection timed out

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connection.py:181: NewConnectionError

During handling of the above exception, another exception occurred:

self = <requests.adapters.HTTPAdapter object at 0x7f754aaca670>
request = <PreparedRequest [POST]>, stream = False
timeout = Timeout(connect=None, read=None, total=None), verify = True
cert = None, proxies = OrderedDict()

    def send(self, request, stream=False, timeout=None, verify=True, cert=None, proxies=None):
        """Sends PreparedRequest object. Returns Response object.
    
        :param request: The :class:`PreparedRequest <PreparedRequest>` being sent.
        :param stream: (optional) Whether to stream the request content.
        :param timeout: (optional) How long to wait for the server to send
            data before giving up, as a float, or a :ref:`(connect timeout,
            read timeout) <timeouts>` tuple.
        :type timeout: float or tuple or urllib3 Timeout object
        :param verify: (optional) Either a boolean, in which case it controls whether
            we verify the server's TLS certificate, or a string, in which case it
            must be a path to a CA bundle to use
        :param cert: (optional) Any user-provided SSL certificate to be trusted.
        :param proxies: (optional) The proxies dictionary to apply to the request.
        :rtype: requests.Response
        """
    
        try:
            conn = self.get_connection(request.url, proxies)
        except LocationValueError as e:
            raise InvalidURL(e, request=request)
    
        self.cert_verify(conn, request.url, verify, cert)
        url = self.request_url(request, proxies)
        self.add_headers(request, stream=stream, timeout=timeout, verify=verify, cert=cert, proxies=proxies)
    
        chunked = not (request.body is None or 'Content-Length' in request.headers)
    
        if isinstance(timeout, tuple):
            try:
                connect, read = timeout
                timeout = TimeoutSauce(connect=connect, read=read)
            except ValueError as e:
                # this may raise a string formatting error.
                err = ("Invalid timeout {}. Pass a (connect, read) "
                       "timeout tuple, or a single float to set "
                       "both timeouts to the same value".format(timeout))
                raise ValueError(err)
        elif isinstance(timeout, TimeoutSauce):
            pass
        else:
            timeout = TimeoutSauce(connect=timeout, read=timeout)
    
        try:
            if not chunked:
>               resp = conn.urlopen(
                    method=request.method,
                    url=url,
                    body=request.body,
                    headers=request.headers,
                    redirect=False,
                    assert_same_host=False,
                    preload_content=False,
                    decode_content=False,
                    retries=self.max_retries,
                    timeout=timeout
                )

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/adapters.py:439: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754aaca340>
method = 'POST'
url = '/api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf'
body = b'{"query": {"term": {"pennsieve.identifier.aggregate": "308"}}}'
headers = {'User-Agent': 'python-requests/2.25.1', 'Accept-Encoding': 'gzip, deflate', 'Accept': '*/*', 'Connection': 'keep-alive', 'Content-Length': '62', 'Content-Type': 'application/json'}
retries = Retry(total=0, connect=None, read=False, redirect=None, status=None)
redirect = False, assert_same_host = False
timeout = Timeout(connect=None, read=None, total=None), pool_timeout = None
release_conn = False, chunked = False, body_pos = None
response_kw = {'decode_content': False, 'preload_content': False}
parsed_url = Url(scheme=None, auth=None, host=None, port=None, path='/api/1/elastic/SPARC_PortalDatasets_dev/_search', query='api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf', fragment=None)
destination_scheme = None, conn = None, release_this_conn = True
http_tunnel_required = False, err = None, clean_exit = False

    def urlopen(
        self,
        method,
        url,
        body=None,
        headers=None,
        retries=None,
        redirect=True,
        assert_same_host=True,
        timeout=_Default,
        pool_timeout=None,
        release_conn=None,
        chunked=False,
        body_pos=None,
        **response_kw
    ):
        """
        Get a connection from the pool and perform an HTTP request. This is the
        lowest level call for making a request, so you'll need to specify all
        the raw details.
    
        .. note::
    
           More commonly, it's appropriate to use a convenience method provided
           by :class:`.RequestMethods`, such as :meth:`request`.
    
        .. note::
    
           `release_conn` will only behave as expected if
           `preload_content=False` because we want to make
           `preload_content=False` the default behaviour someday soon without
           breaking backwards compatibility.
    
        :param method:
            HTTP request method (such as GET, POST, PUT, etc.)
    
        :param url:
            The URL to perform the request on.
    
        :param body:
            Data to send in the request body, either :class:`str`, :class:`bytes`,
            an iterable of :class:`str`/:class:`bytes`, or a file-like object.
    
        :param headers:
            Dictionary of custom headers to send, such as User-Agent,
            If-None-Match, etc. If None, pool headers are used. If provided,
            these headers completely replace any pool-specific headers.
    
        :param retries:
            Configure the number of retries to allow before raising a
            :class:`~urllib3.exceptions.MaxRetryError` exception.
    
            Pass ``None`` to retry until you receive a response. Pass a
            :class:`~urllib3.util.retry.Retry` object for fine-grained control
            over different types of retries.
            Pass an integer number to retry connection errors that many times,
            but no other types of errors. Pass zero to never retry.
    
            If ``False``, then retries are disabled and any exception is raised
            immediately. Also, instead of raising a MaxRetryError on redirects,
            the redirect response will be returned.
    
        :type retries: :class:`~urllib3.util.retry.Retry`, False, or an int.
    
        :param redirect:
            If True, automatically handle redirects (status codes 301, 302,
            303, 307, 308). Each redirect counts as a retry. Disabling retries
            will disable redirect, too.
    
        :param assert_same_host:
            If ``True``, will make sure that the host of the pool requests is
            consistent else will raise HostChangedError. When ``False``, you can
            use the pool on an HTTP proxy and request foreign hosts.
    
        :param timeout:
            If specified, overrides the default timeout for this one
            request. It may be a float (in seconds) or an instance of
            :class:`urllib3.util.Timeout`.
    
        :param pool_timeout:
            If set and the pool is set to block=True, then this method will
            block for ``pool_timeout`` seconds and raise EmptyPoolError if no
            connection is available within the time period.
    
        :param release_conn:
            If False, then the urlopen call will not release the connection
            back into the pool once a response is received (but will release if
            you read the entire contents of the response such as when
            `preload_content=True`). This is useful if you're not preloading
            the response's content immediately. You will need to call
            ``r.release_conn()`` on the response ``r`` to return the connection
            back into the pool. If None, it takes the value of
            ``response_kw.get('preload_content', True)``.
    
        :param chunked:
            If True, urllib3 will send the body using chunked transfer
            encoding. Otherwise, urllib3 will send the body using the standard
            content-length form. Defaults to False.
    
        :param int body_pos:
            Position to seek to in file-like body in the event of a retry or
            redirect. Typically this won't need to be set because urllib3 will
            auto-populate the value when needed.
    
        :param \\**response_kw:
            Additional parameters are passed to
            :meth:`urllib3.response.HTTPResponse.from_httplib`
        """
    
        parsed_url = parse_url(url)
        destination_scheme = parsed_url.scheme
    
        if headers is None:
            headers = self.headers
    
        if not isinstance(retries, Retry):
            retries = Retry.from_int(retries, redirect=redirect, default=self.retries)
    
        if release_conn is None:
            release_conn = response_kw.get("preload_content", True)
    
        # Check host
        if assert_same_host and not self.is_same_host(url):
            raise HostChangedError(self, url, retries)
    
        # Ensure that the URL we're connecting to is properly encoded
        if url.startswith("/"):
            url = six.ensure_str(_encode_target(url))
        else:
            url = six.ensure_str(parsed_url.url)
    
        conn = None
    
        # Track whether `conn` needs to be released before
        # returning/raising/recursing. Update this variable if necessary, and
        # leave `release_conn` constant throughout the function. That way, if
        # the function recurses, the original value of `release_conn` will be
        # passed down into the recursive call, and its value will be respected.
        #
        # See issue #651 [1] for details.
        #
        # [1] <https://github.com/urllib3/urllib3/issues/651>
        release_this_conn = release_conn
    
        http_tunnel_required = connection_requires_http_tunnel(
            self.proxy, self.proxy_config, destination_scheme
        )
    
        # Merge the proxy headers. Only done when not using HTTP CONNECT. We
        # have to copy the headers dict so we can safely change it without those
        # changes being reflected in anyone else's copy.
        if not http_tunnel_required:
            headers = headers.copy()
            headers.update(self.proxy_headers)
    
        # Must keep the exception bound to a separate variable or else Python 3
        # complains about UnboundLocalError.
        err = None
    
        # Keep track of whether we cleanly exited the except block. This
        # ensures we do proper cleanup in finally.
        clean_exit = False
    
        # Rewind body position, if needed. Record current position
        # for future rewinds in the event of a redirect/retry.
        body_pos = set_file_position(body, body_pos)
    
        try:
            # Request a connection from the queue.
            timeout_obj = self._get_timeout(timeout)
            conn = self._get_conn(timeout=pool_timeout)
    
            conn.timeout = timeout_obj.connect_timeout
    
            is_new_proxy_conn = self.proxy is not None and not getattr(
                conn, "sock", None
            )
            if is_new_proxy_conn and http_tunnel_required:
                self._prepare_proxy(conn)
    
            # Make the request on the httplib connection object.
            httplib_response = self._make_request(
                conn,
                method,
                url,
                timeout=timeout_obj,
                body=body,
                headers=headers,
                chunked=chunked,
            )
    
            # If we're going to release the connection in ``finally:``, then
            # the response doesn't need to know about the connection. Otherwise
            # it will also try to release it and we'll have a double-release
            # mess.
            response_conn = conn if not release_conn else None
    
            # Pass method to Response for length checking
            response_kw["request_method"] = method
    
            # Import httplib's response into our own wrapper object
            response = self.ResponseCls.from_httplib(
                httplib_response,
                pool=self,
                connection=response_conn,
                retries=retries,
                **response_kw
            )
    
            # Everything went great!
            clean_exit = True
    
        except EmptyPoolError:
            # Didn't get a connection from the pool, no need to clean up
            clean_exit = True
            release_this_conn = False
            raise
    
        except (
            TimeoutError,
            HTTPException,
            SocketError,
            ProtocolError,
            BaseSSLError,
            SSLError,
            CertificateError,
        ) as e:
            # Discard the connection for these exceptions. It will be
            # replaced during the next _get_conn() call.
            clean_exit = False
            if isinstance(e, (BaseSSLError, CertificateError)):
                e = SSLError(e)
            elif isinstance(e, (SocketError, NewConnectionError)) and self.proxy:
                e = ProxyError("Cannot connect to proxy.", e)
            elif isinstance(e, (SocketError, HTTPException)):
                e = ProtocolError("Connection aborted.", e)
    
>           retries = retries.increment(
                method, url, error=e, _pool=self, _stacktrace=sys.exc_info()[2]
            )

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py:755: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = Retry(total=0, connect=None, read=False, redirect=None, status=None)
method = 'POST'
url = '/api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf'
response = None
error = NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7f754aacd280>: Failed to establish a new connection: [Errno 110] Connection timed out')
_pool = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754aaca340>
_stacktrace = <traceback object at 0x7f754a7c85c0>

    def increment(
        self,
        method=None,
        url=None,
        response=None,
        error=None,
        _pool=None,
        _stacktrace=None,
    ):
        """Return a new Retry object with incremented retry counters.
    
        :param response: A response object, or None, if the server did not
            return a response.
        :type response: :class:`~urllib3.response.HTTPResponse`
        :param Exception error: An error encountered during the request, or
            None if the response was received successfully.
    
        :return: A new ``Retry`` object.
        """
        if self.total is False and error:
            # Disabled, indicate to re-raise the error.
            raise six.reraise(type(error), error, _stacktrace)
    
        total = self.total
        if total is not None:
            total -= 1
    
        connect = self.connect
        read = self.read
        redirect = self.redirect
        status_count = self.status
        other = self.other
        cause = "unknown"
        status = None
        redirect_location = None
    
        if error and self._is_connection_error(error):
            # Connect retry?
            if connect is False:
                raise six.reraise(type(error), error, _stacktrace)
            elif connect is not None:
                connect -= 1
    
        elif error and self._is_read_error(error):
            # Read retry?
            if read is False or not self._is_method_retryable(method):
                raise six.reraise(type(error), error, _stacktrace)
            elif read is not None:
                read -= 1
    
        elif error:
            # Other retry?
            if other is not None:
                other -= 1
    
        elif response and response.get_redirect_location():
            # Redirect retry?
            if redirect is not None:
                redirect -= 1
            cause = "too many redirects"
            redirect_location = response.get_redirect_location()
            status = response.status
    
        else:
            # Incrementing because of a server error like a 500 in
            # status_forcelist and the given method is in the allowed_methods
            cause = ResponseError.GENERIC_ERROR
            if response and response.status:
                if status_count is not None:
                    status_count -= 1
                cause = ResponseError.SPECIFIC_ERROR.format(status_code=response.status)
                status = response.status
    
        history = self.history + (
            RequestHistory(method, url, error, status, redirect_location),
        )
    
        new_retry = self.new(
            total=total,
            connect=connect,
            read=read,
            redirect=redirect,
            status=status_count,
            other=other,
            history=history,
        )
    
        if new_retry.is_exhausted():
>           raise MaxRetryError(_pool, url, error or ResponseError(cause))
E           urllib3.exceptions.MaxRetryError: HTTPSConnectionPool(host='scicrunch.org', port=443): Max retries exceeded with url: /api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7f754aacd280>: Failed to establish a new connection: [Errno 110] Connection timed out'))

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/util/retry.py:574: MaxRetryError

During handling of the above exception, another exception occurred:

client = <FlaskClient <Flask 'app.main'>>

    def test_simulation_ui_file_new_s3_bucket(client):
>       r = client.get('/simulation_ui_file/308')

tests/test_api.py:211: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/werkzeug/test.py:1029: in get
    return self.open(*args, **kw)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/testing.py:222: in open
    return Client.open(
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/werkzeug/test.py:993: in open
    response = self.run_wsgi_app(environ.copy(), buffered=buffered)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/werkzeug/test.py:884: in run_wsgi_app
    rv = run_wsgi_app(self.application, environ, buffered=buffered)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/werkzeug/test.py:1119: in run_wsgi_app
    app_rv = app(environ, start_response)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:2463: in __call__
    return self.wsgi_app(environ, start_response)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:2449: in wsgi_app
    response = self.handle_exception(e)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask_cors/extension.py:161: in wrapped_function
    return cors_after_request(app.make_response(f(*args, **kwargs)))
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1866: in handle_exception
    reraise(exc_type, exc_value, tb)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/_compat.py:39: in reraise
    raise value
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:2446: in wsgi_app
    response = self.full_dispatch_request()
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1951: in full_dispatch_request
    rv = self.handle_user_exception(e)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask_cors/extension.py:161: in wrapped_function
    return cors_after_request(app.make_response(f(*args, **kwargs)))
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1820: in handle_user_exception
    reraise(exc_type, exc_value, tb)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/_compat.py:39: in reraise
    raise value
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1949: in full_dispatch_request
    rv = self.dispatch_request()
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1935: in dispatch_request
    return self.view_functions[rule.endpoint](**req.view_args)
app/main.py:1358: in simulation_ui_file
    results = process_results(dataset_search(create_pennsieve_identifier_query(identifier)))
app/main.py:663: in dataset_search
    response = requests.post(f'{Config.SCI_CRUNCH_HOST}/_search',
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/api.py:119: in post
    return request('post', url, data=data, json=json, **kwargs)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/api.py:61: in request
    return session.request(method=method, url=url, **kwargs)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/sessions.py:542: in request
    resp = self.send(prep, **send_kwargs)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/sessions.py:655: in send
    r = adapter.send(request, **kwargs)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <requests.adapters.HTTPAdapter object at 0x7f754aaca670>
request = <PreparedRequest [POST]>, stream = False
timeout = Timeout(connect=None, read=None, total=None), verify = True
cert = None, proxies = OrderedDict()

    def send(self, request, stream=False, timeout=None, verify=True, cert=None, proxies=None):
        """Sends PreparedRequest object. Returns Response object.
    
        :param request: The :class:`PreparedRequest <PreparedRequest>` being sent.
        :param stream: (optional) Whether to stream the request content.
        :param timeout: (optional) How long to wait for the server to send
            data before giving up, as a float, or a :ref:`(connect timeout,
            read timeout) <timeouts>` tuple.
        :type timeout: float or tuple or urllib3 Timeout object
        :param verify: (optional) Either a boolean, in which case it controls whether
            we verify the server's TLS certificate, or a string, in which case it
            must be a path to a CA bundle to use
        :param cert: (optional) Any user-provided SSL certificate to be trusted.
        :param proxies: (optional) The proxies dictionary to apply to the request.
        :rtype: requests.Response
        """
    
        try:
            conn = self.get_connection(request.url, proxies)
        except LocationValueError as e:
            raise InvalidURL(e, request=request)
    
        self.cert_verify(conn, request.url, verify, cert)
        url = self.request_url(request, proxies)
        self.add_headers(request, stream=stream, timeout=timeout, verify=verify, cert=cert, proxies=proxies)
    
        chunked = not (request.body is None or 'Content-Length' in request.headers)
    
        if isinstance(timeout, tuple):
            try:
                connect, read = timeout
                timeout = TimeoutSauce(connect=connect, read=read)
            except ValueError as e:
                # this may raise a string formatting error.
                err = ("Invalid timeout {}. Pass a (connect, read) "
                       "timeout tuple, or a single float to set "
                       "both timeouts to the same value".format(timeout))
                raise ValueError(err)
        elif isinstance(timeout, TimeoutSauce):
            pass
        else:
            timeout = TimeoutSauce(connect=timeout, read=timeout)
    
        try:
            if not chunked:
                resp = conn.urlopen(
                    method=request.method,
                    url=url,
                    body=request.body,
                    headers=request.headers,
                    redirect=False,
                    assert_same_host=False,
                    preload_content=False,
                    decode_content=False,
                    retries=self.max_retries,
                    timeout=timeout
                )
    
            # Send the request.
            else:
                if hasattr(conn, 'proxy_pool'):
                    conn = conn.proxy_pool
    
                low_conn = conn._get_conn(timeout=DEFAULT_POOL_TIMEOUT)
    
                try:
                    low_conn.putrequest(request.method,
                                        url,
                                        skip_accept_encoding=True)
    
                    for header, value in request.headers.items():
                        low_conn.putheader(header, value)
    
                    low_conn.endheaders()
    
                    for i in request.body:
                        low_conn.send(hex(len(i))[2:].encode('utf-8'))
                        low_conn.send(b'\r\n')
                        low_conn.send(i)
                        low_conn.send(b'\r\n')
                    low_conn.send(b'0\r\n\r\n')
    
                    # Receive the response from the server
                    try:
                        # For Python 2.7, use buffering of HTTP responses
                        r = low_conn.getresponse(buffering=True)
                    except TypeError:
                        # For compatibility with Python 3.3+
                        r = low_conn.getresponse()
    
                    resp = HTTPResponse.from_httplib(
                        r,
                        pool=conn,
                        connection=low_conn,
                        preload_content=False,
                        decode_content=False
                    )
                except:
                    # If we hit any problems here, clean up the connection.
                    # Then, reraise so that we can handle the actual exception.
                    low_conn.close()
                    raise
    
        except (ProtocolError, socket.error) as err:
            raise ConnectionError(err, request=request)
    
        except MaxRetryError as e:
            if isinstance(e.reason, ConnectTimeoutError):
                # TODO: Remove this in 3.0.0: see #2811
                if not isinstance(e.reason, NewConnectionError):
                    raise ConnectTimeout(e, request=request)
    
            if isinstance(e.reason, ResponseError):
                raise RetryError(e, request=request)
    
            if isinstance(e.reason, _ProxyError):
                raise ProxyError(e, request=request)
    
            if isinstance(e.reason, _SSLError):
                # This branch is for urllib3 v1.22 and later.
                raise SSLError(e, request=request)
    
>           raise ConnectionError(e, request=request)
E           requests.exceptions.ConnectionError: HTTPSConnectionPool(host='scicrunch.org', port=443): Max retries exceeded with url: /api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7f754aacd280>: Failed to establish a new connection: [Errno 110] Connection timed out'))

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/adapters.py:516: ConnectionError
____________________________ test_current_doi_list _____________________________

self = <urllib3.connection.HTTPSConnection object at 0x7f754ac228e0>

    def _new_conn(self):
        """Establish a socket connection and set nodelay settings on it.
    
        :return: New socket connection.
        """
        extra_kw = {}
        if self.source_address:
            extra_kw["source_address"] = self.source_address
    
        if self.socket_options:
            extra_kw["socket_options"] = self.socket_options
    
        try:
>           conn = connection.create_connection(
                (self._dns_host, self.port), self.timeout, **extra_kw
            )

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connection.py:169: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

address = ('scicrunch.org', 443), timeout = None, source_address = None
socket_options = [(6, 1, 1)]

    def create_connection(
        address,
        timeout=socket._GLOBAL_DEFAULT_TIMEOUT,
        source_address=None,
        socket_options=None,
    ):
        """Connect to *address* and return the socket object.
    
        Convenience function.  Connect to *address* (a 2-tuple ``(host,
        port)``) and return the socket object.  Passing the optional
        *timeout* parameter will set the timeout on the socket instance
        before attempting to connect.  If no *timeout* is supplied, the
        global default timeout setting returned by :func:`socket.getdefaulttimeout`
        is used.  If *source_address* is set it must be a tuple of (host, port)
        for the socket to bind as a source address before making the connection.
        An host of '' or port 0 tells the OS to use the default.
        """
    
        host, port = address
        if host.startswith("["):
            host = host.strip("[]")
        err = None
    
        # Using the value from allowed_gai_family() in the context of getaddrinfo lets
        # us select whether to work with IPv4 DNS records, IPv6 records, or both.
        # The original create_connection function always returns all records.
        family = allowed_gai_family()
    
        try:
            host.encode("idna")
        except UnicodeError:
            return six.raise_from(
                LocationParseError(u"'%s', label empty or too long" % host), None
            )
    
        for res in socket.getaddrinfo(host, port, family, socket.SOCK_STREAM):
            af, socktype, proto, canonname, sa = res
            sock = None
            try:
                sock = socket.socket(af, socktype, proto)
    
                # If provided, set socket level options before connecting.
                _set_socket_options(sock, socket_options)
    
                if timeout is not socket._GLOBAL_DEFAULT_TIMEOUT:
                    sock.settimeout(timeout)
                if source_address:
                    sock.bind(source_address)
                sock.connect(sa)
                return sock
    
            except socket.error as e:
                err = e
                if sock is not None:
                    sock.close()
                    sock = None
    
        if err is not None:
>           raise err

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/util/connection.py:96: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

address = ('scicrunch.org', 443), timeout = None, source_address = None
socket_options = [(6, 1, 1)]

    def create_connection(
        address,
        timeout=socket._GLOBAL_DEFAULT_TIMEOUT,
        source_address=None,
        socket_options=None,
    ):
        """Connect to *address* and return the socket object.
    
        Convenience function.  Connect to *address* (a 2-tuple ``(host,
        port)``) and return the socket object.  Passing the optional
        *timeout* parameter will set the timeout on the socket instance
        before attempting to connect.  If no *timeout* is supplied, the
        global default timeout setting returned by :func:`socket.getdefaulttimeout`
        is used.  If *source_address* is set it must be a tuple of (host, port)
        for the socket to bind as a source address before making the connection.
        An host of '' or port 0 tells the OS to use the default.
        """
    
        host, port = address
        if host.startswith("["):
            host = host.strip("[]")
        err = None
    
        # Using the value from allowed_gai_family() in the context of getaddrinfo lets
        # us select whether to work with IPv4 DNS records, IPv6 records, or both.
        # The original create_connection function always returns all records.
        family = allowed_gai_family()
    
        try:
            host.encode("idna")
        except UnicodeError:
            return six.raise_from(
                LocationParseError(u"'%s', label empty or too long" % host), None
            )
    
        for res in socket.getaddrinfo(host, port, family, socket.SOCK_STREAM):
            af, socktype, proto, canonname, sa = res
            sock = None
            try:
                sock = socket.socket(af, socktype, proto)
    
                # If provided, set socket level options before connecting.
                _set_socket_options(sock, socket_options)
    
                if timeout is not socket._GLOBAL_DEFAULT_TIMEOUT:
                    sock.settimeout(timeout)
                if source_address:
                    sock.bind(source_address)
>               sock.connect(sa)
E               TimeoutError: [Errno 110] Connection timed out

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/util/connection.py:86: TimeoutError

During handling of the above exception, another exception occurred:

self = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754ac22fa0>
method = 'POST'
url = '/api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf'
body = b'{"from": 0, "size": 0, "aggregations": {"doi": {"composite": {"size": 1000, "sources": [{"curie": {"terms": {"field": "item.curie.aggregate"}}}], "after": {"curie": ""}}}}}'
headers = {'User-Agent': 'python-requests/2.25.1', 'Accept-Encoding': 'gzip, deflate', 'Accept': '*/*', 'Connection': 'keep-alive', 'Content-Length': '172', 'Content-Type': 'application/json'}
retries = Retry(total=0, connect=None, read=False, redirect=None, status=None)
redirect = False, assert_same_host = False
timeout = Timeout(connect=None, read=None, total=None), pool_timeout = None
release_conn = False, chunked = False, body_pos = None
response_kw = {'decode_content': False, 'preload_content': False}
parsed_url = Url(scheme=None, auth=None, host=None, port=None, path='/api/1/elastic/SPARC_PortalDatasets_dev/_search', query='api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf', fragment=None)
destination_scheme = None, conn = None, release_this_conn = True
http_tunnel_required = False, err = None, clean_exit = False

    def urlopen(
        self,
        method,
        url,
        body=None,
        headers=None,
        retries=None,
        redirect=True,
        assert_same_host=True,
        timeout=_Default,
        pool_timeout=None,
        release_conn=None,
        chunked=False,
        body_pos=None,
        **response_kw
    ):
        """
        Get a connection from the pool and perform an HTTP request. This is the
        lowest level call for making a request, so you'll need to specify all
        the raw details.
    
        .. note::
    
           More commonly, it's appropriate to use a convenience method provided
           by :class:`.RequestMethods`, such as :meth:`request`.
    
        .. note::
    
           `release_conn` will only behave as expected if
           `preload_content=False` because we want to make
           `preload_content=False` the default behaviour someday soon without
           breaking backwards compatibility.
    
        :param method:
            HTTP request method (such as GET, POST, PUT, etc.)
    
        :param url:
            The URL to perform the request on.
    
        :param body:
            Data to send in the request body, either :class:`str`, :class:`bytes`,
            an iterable of :class:`str`/:class:`bytes`, or a file-like object.
    
        :param headers:
            Dictionary of custom headers to send, such as User-Agent,
            If-None-Match, etc. If None, pool headers are used. If provided,
            these headers completely replace any pool-specific headers.
    
        :param retries:
            Configure the number of retries to allow before raising a
            :class:`~urllib3.exceptions.MaxRetryError` exception.
    
            Pass ``None`` to retry until you receive a response. Pass a
            :class:`~urllib3.util.retry.Retry` object for fine-grained control
            over different types of retries.
            Pass an integer number to retry connection errors that many times,
            but no other types of errors. Pass zero to never retry.
    
            If ``False``, then retries are disabled and any exception is raised
            immediately. Also, instead of raising a MaxRetryError on redirects,
            the redirect response will be returned.
    
        :type retries: :class:`~urllib3.util.retry.Retry`, False, or an int.
    
        :param redirect:
            If True, automatically handle redirects (status codes 301, 302,
            303, 307, 308). Each redirect counts as a retry. Disabling retries
            will disable redirect, too.
    
        :param assert_same_host:
            If ``True``, will make sure that the host of the pool requests is
            consistent else will raise HostChangedError. When ``False``, you can
            use the pool on an HTTP proxy and request foreign hosts.
    
        :param timeout:
            If specified, overrides the default timeout for this one
            request. It may be a float (in seconds) or an instance of
            :class:`urllib3.util.Timeout`.
    
        :param pool_timeout:
            If set and the pool is set to block=True, then this method will
            block for ``pool_timeout`` seconds and raise EmptyPoolError if no
            connection is available within the time period.
    
        :param release_conn:
            If False, then the urlopen call will not release the connection
            back into the pool once a response is received (but will release if
            you read the entire contents of the response such as when
            `preload_content=True`). This is useful if you're not preloading
            the response's content immediately. You will need to call
            ``r.release_conn()`` on the response ``r`` to return the connection
            back into the pool. If None, it takes the value of
            ``response_kw.get('preload_content', True)``.
    
        :param chunked:
            If True, urllib3 will send the body using chunked transfer
            encoding. Otherwise, urllib3 will send the body using the standard
            content-length form. Defaults to False.
    
        :param int body_pos:
            Position to seek to in file-like body in the event of a retry or
            redirect. Typically this won't need to be set because urllib3 will
            auto-populate the value when needed.
    
        :param \\**response_kw:
            Additional parameters are passed to
            :meth:`urllib3.response.HTTPResponse.from_httplib`
        """
    
        parsed_url = parse_url(url)
        destination_scheme = parsed_url.scheme
    
        if headers is None:
            headers = self.headers
    
        if not isinstance(retries, Retry):
            retries = Retry.from_int(retries, redirect=redirect, default=self.retries)
    
        if release_conn is None:
            release_conn = response_kw.get("preload_content", True)
    
        # Check host
        if assert_same_host and not self.is_same_host(url):
            raise HostChangedError(self, url, retries)
    
        # Ensure that the URL we're connecting to is properly encoded
        if url.startswith("/"):
            url = six.ensure_str(_encode_target(url))
        else:
            url = six.ensure_str(parsed_url.url)
    
        conn = None
    
        # Track whether `conn` needs to be released before
        # returning/raising/recursing. Update this variable if necessary, and
        # leave `release_conn` constant throughout the function. That way, if
        # the function recurses, the original value of `release_conn` will be
        # passed down into the recursive call, and its value will be respected.
        #
        # See issue #651 [1] for details.
        #
        # [1] <https://github.com/urllib3/urllib3/issues/651>
        release_this_conn = release_conn
    
        http_tunnel_required = connection_requires_http_tunnel(
            self.proxy, self.proxy_config, destination_scheme
        )
    
        # Merge the proxy headers. Only done when not using HTTP CONNECT. We
        # have to copy the headers dict so we can safely change it without those
        # changes being reflected in anyone else's copy.
        if not http_tunnel_required:
            headers = headers.copy()
            headers.update(self.proxy_headers)
    
        # Must keep the exception bound to a separate variable or else Python 3
        # complains about UnboundLocalError.
        err = None
    
        # Keep track of whether we cleanly exited the except block. This
        # ensures we do proper cleanup in finally.
        clean_exit = False
    
        # Rewind body position, if needed. Record current position
        # for future rewinds in the event of a redirect/retry.
        body_pos = set_file_position(body, body_pos)
    
        try:
            # Request a connection from the queue.
            timeout_obj = self._get_timeout(timeout)
            conn = self._get_conn(timeout=pool_timeout)
    
            conn.timeout = timeout_obj.connect_timeout
    
            is_new_proxy_conn = self.proxy is not None and not getattr(
                conn, "sock", None
            )
            if is_new_proxy_conn and http_tunnel_required:
                self._prepare_proxy(conn)
    
            # Make the request on the httplib connection object.
>           httplib_response = self._make_request(
                conn,
                method,
                url,
                timeout=timeout_obj,
                body=body,
                headers=headers,
                chunked=chunked,
            )

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py:699: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754ac22fa0>
conn = <urllib3.connection.HTTPSConnection object at 0x7f754ac228e0>
method = 'POST'
url = '/api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf'
timeout = Timeout(connect=None, read=None, total=None), chunked = False
httplib_request_kw = {'body': b'{"from": 0, "size": 0, "aggregations": {"doi": {"composite": {"size": 1000, "sources": [{"curie": {"terms":...p, deflate', 'Accept': '*/*', 'Connection': 'keep-alive', 'Content-Length': '172', 'Content-Type': 'application/json'}}
timeout_obj = Timeout(connect=None, read=None, total=None)

    def _make_request(
        self, conn, method, url, timeout=_Default, chunked=False, **httplib_request_kw
    ):
        """
        Perform a request on a given urllib connection object taken from our
        pool.
    
        :param conn:
            a connection from one of our connection pools
    
        :param timeout:
            Socket timeout in seconds for the request. This can be a
            float or integer, which will set the same timeout value for
            the socket connect and the socket read, or an instance of
            :class:`urllib3.util.Timeout`, which gives you more fine-grained
            control over your timeouts.
        """
        self.num_requests += 1
    
        timeout_obj = self._get_timeout(timeout)
        timeout_obj.start_connect()
        conn.timeout = timeout_obj.connect_timeout
    
        # Trigger any extra validation we need to do.
        try:
>           self._validate_conn(conn)

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py:382: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754ac22fa0>
conn = <urllib3.connection.HTTPSConnection object at 0x7f754ac228e0>

    def _validate_conn(self, conn):
        """
        Called right before a request is made, after the socket is created.
        """
        super(HTTPSConnectionPool, self)._validate_conn(conn)
    
        # Force connect early to allow us to validate the connection.
        if not getattr(conn, "sock", None):  # AppEngine might not have  `.sock`
>           conn.connect()

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py:1010: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connection.HTTPSConnection object at 0x7f754ac228e0>

    def connect(self):
        # Add certificate verification
>       conn = self._new_conn()

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connection.py:353: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connection.HTTPSConnection object at 0x7f754ac228e0>

    def _new_conn(self):
        """Establish a socket connection and set nodelay settings on it.
    
        :return: New socket connection.
        """
        extra_kw = {}
        if self.source_address:
            extra_kw["source_address"] = self.source_address
    
        if self.socket_options:
            extra_kw["socket_options"] = self.socket_options
    
        try:
            conn = connection.create_connection(
                (self._dns_host, self.port), self.timeout, **extra_kw
            )
    
        except SocketTimeout:
            raise ConnectTimeoutError(
                self,
                "Connection to %s timed out. (connect timeout=%s)"
                % (self.host, self.timeout),
            )
    
        except SocketError as e:
>           raise NewConnectionError(
                self, "Failed to establish a new connection: %s" % e
            )
E           urllib3.exceptions.NewConnectionError: <urllib3.connection.HTTPSConnection object at 0x7f754ac228e0>: Failed to establish a new connection: [Errno 110] Connection timed out

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connection.py:181: NewConnectionError

During handling of the above exception, another exception occurred:

self = <requests.adapters.HTTPAdapter object at 0x7f754a957dc0>
request = <PreparedRequest [POST]>, stream = False
timeout = Timeout(connect=None, read=None, total=None), verify = True
cert = None, proxies = OrderedDict()

    def send(self, request, stream=False, timeout=None, verify=True, cert=None, proxies=None):
        """Sends PreparedRequest object. Returns Response object.
    
        :param request: The :class:`PreparedRequest <PreparedRequest>` being sent.
        :param stream: (optional) Whether to stream the request content.
        :param timeout: (optional) How long to wait for the server to send
            data before giving up, as a float, or a :ref:`(connect timeout,
            read timeout) <timeouts>` tuple.
        :type timeout: float or tuple or urllib3 Timeout object
        :param verify: (optional) Either a boolean, in which case it controls whether
            we verify the server's TLS certificate, or a string, in which case it
            must be a path to a CA bundle to use
        :param cert: (optional) Any user-provided SSL certificate to be trusted.
        :param proxies: (optional) The proxies dictionary to apply to the request.
        :rtype: requests.Response
        """
    
        try:
            conn = self.get_connection(request.url, proxies)
        except LocationValueError as e:
            raise InvalidURL(e, request=request)
    
        self.cert_verify(conn, request.url, verify, cert)
        url = self.request_url(request, proxies)
        self.add_headers(request, stream=stream, timeout=timeout, verify=verify, cert=cert, proxies=proxies)
    
        chunked = not (request.body is None or 'Content-Length' in request.headers)
    
        if isinstance(timeout, tuple):
            try:
                connect, read = timeout
                timeout = TimeoutSauce(connect=connect, read=read)
            except ValueError as e:
                # this may raise a string formatting error.
                err = ("Invalid timeout {}. Pass a (connect, read) "
                       "timeout tuple, or a single float to set "
                       "both timeouts to the same value".format(timeout))
                raise ValueError(err)
        elif isinstance(timeout, TimeoutSauce):
            pass
        else:
            timeout = TimeoutSauce(connect=timeout, read=timeout)
    
        try:
            if not chunked:
>               resp = conn.urlopen(
                    method=request.method,
                    url=url,
                    body=request.body,
                    headers=request.headers,
                    redirect=False,
                    assert_same_host=False,
                    preload_content=False,
                    decode_content=False,
                    retries=self.max_retries,
                    timeout=timeout
                )

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/adapters.py:439: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754ac22fa0>
method = 'POST'
url = '/api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf'
body = b'{"from": 0, "size": 0, "aggregations": {"doi": {"composite": {"size": 1000, "sources": [{"curie": {"terms": {"field": "item.curie.aggregate"}}}], "after": {"curie": ""}}}}}'
headers = {'User-Agent': 'python-requests/2.25.1', 'Accept-Encoding': 'gzip, deflate', 'Accept': '*/*', 'Connection': 'keep-alive', 'Content-Length': '172', 'Content-Type': 'application/json'}
retries = Retry(total=0, connect=None, read=False, redirect=None, status=None)
redirect = False, assert_same_host = False
timeout = Timeout(connect=None, read=None, total=None), pool_timeout = None
release_conn = False, chunked = False, body_pos = None
response_kw = {'decode_content': False, 'preload_content': False}
parsed_url = Url(scheme=None, auth=None, host=None, port=None, path='/api/1/elastic/SPARC_PortalDatasets_dev/_search', query='api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf', fragment=None)
destination_scheme = None, conn = None, release_this_conn = True
http_tunnel_required = False, err = None, clean_exit = False

    def urlopen(
        self,
        method,
        url,
        body=None,
        headers=None,
        retries=None,
        redirect=True,
        assert_same_host=True,
        timeout=_Default,
        pool_timeout=None,
        release_conn=None,
        chunked=False,
        body_pos=None,
        **response_kw
    ):
        """
        Get a connection from the pool and perform an HTTP request. This is the
        lowest level call for making a request, so you'll need to specify all
        the raw details.
    
        .. note::
    
           More commonly, it's appropriate to use a convenience method provided
           by :class:`.RequestMethods`, such as :meth:`request`.
    
        .. note::
    
           `release_conn` will only behave as expected if
           `preload_content=False` because we want to make
           `preload_content=False` the default behaviour someday soon without
           breaking backwards compatibility.
    
        :param method:
            HTTP request method (such as GET, POST, PUT, etc.)
    
        :param url:
            The URL to perform the request on.
    
        :param body:
            Data to send in the request body, either :class:`str`, :class:`bytes`,
            an iterable of :class:`str`/:class:`bytes`, or a file-like object.
    
        :param headers:
            Dictionary of custom headers to send, such as User-Agent,
            If-None-Match, etc. If None, pool headers are used. If provided,
            these headers completely replace any pool-specific headers.
    
        :param retries:
            Configure the number of retries to allow before raising a
            :class:`~urllib3.exceptions.MaxRetryError` exception.
    
            Pass ``None`` to retry until you receive a response. Pass a
            :class:`~urllib3.util.retry.Retry` object for fine-grained control
            over different types of retries.
            Pass an integer number to retry connection errors that many times,
            but no other types of errors. Pass zero to never retry.
    
            If ``False``, then retries are disabled and any exception is raised
            immediately. Also, instead of raising a MaxRetryError on redirects,
            the redirect response will be returned.
    
        :type retries: :class:`~urllib3.util.retry.Retry`, False, or an int.
    
        :param redirect:
            If True, automatically handle redirects (status codes 301, 302,
            303, 307, 308). Each redirect counts as a retry. Disabling retries
            will disable redirect, too.
    
        :param assert_same_host:
            If ``True``, will make sure that the host of the pool requests is
            consistent else will raise HostChangedError. When ``False``, you can
            use the pool on an HTTP proxy and request foreign hosts.
    
        :param timeout:
            If specified, overrides the default timeout for this one
            request. It may be a float (in seconds) or an instance of
            :class:`urllib3.util.Timeout`.
    
        :param pool_timeout:
            If set and the pool is set to block=True, then this method will
            block for ``pool_timeout`` seconds and raise EmptyPoolError if no
            connection is available within the time period.
    
        :param release_conn:
            If False, then the urlopen call will not release the connection
            back into the pool once a response is received (but will release if
            you read the entire contents of the response such as when
            `preload_content=True`). This is useful if you're not preloading
            the response's content immediately. You will need to call
            ``r.release_conn()`` on the response ``r`` to return the connection
            back into the pool. If None, it takes the value of
            ``response_kw.get('preload_content', True)``.
    
        :param chunked:
            If True, urllib3 will send the body using chunked transfer
            encoding. Otherwise, urllib3 will send the body using the standard
            content-length form. Defaults to False.
    
        :param int body_pos:
            Position to seek to in file-like body in the event of a retry or
            redirect. Typically this won't need to be set because urllib3 will
            auto-populate the value when needed.
    
        :param \\**response_kw:
            Additional parameters are passed to
            :meth:`urllib3.response.HTTPResponse.from_httplib`
        """
    
        parsed_url = parse_url(url)
        destination_scheme = parsed_url.scheme
    
        if headers is None:
            headers = self.headers
    
        if not isinstance(retries, Retry):
            retries = Retry.from_int(retries, redirect=redirect, default=self.retries)
    
        if release_conn is None:
            release_conn = response_kw.get("preload_content", True)
    
        # Check host
        if assert_same_host and not self.is_same_host(url):
            raise HostChangedError(self, url, retries)
    
        # Ensure that the URL we're connecting to is properly encoded
        if url.startswith("/"):
            url = six.ensure_str(_encode_target(url))
        else:
            url = six.ensure_str(parsed_url.url)
    
        conn = None
    
        # Track whether `conn` needs to be released before
        # returning/raising/recursing. Update this variable if necessary, and
        # leave `release_conn` constant throughout the function. That way, if
        # the function recurses, the original value of `release_conn` will be
        # passed down into the recursive call, and its value will be respected.
        #
        # See issue #651 [1] for details.
        #
        # [1] <https://github.com/urllib3/urllib3/issues/651>
        release_this_conn = release_conn
    
        http_tunnel_required = connection_requires_http_tunnel(
            self.proxy, self.proxy_config, destination_scheme
        )
    
        # Merge the proxy headers. Only done when not using HTTP CONNECT. We
        # have to copy the headers dict so we can safely change it without those
        # changes being reflected in anyone else's copy.
        if not http_tunnel_required:
            headers = headers.copy()
            headers.update(self.proxy_headers)
    
        # Must keep the exception bound to a separate variable or else Python 3
        # complains about UnboundLocalError.
        err = None
    
        # Keep track of whether we cleanly exited the except block. This
        # ensures we do proper cleanup in finally.
        clean_exit = False
    
        # Rewind body position, if needed. Record current position
        # for future rewinds in the event of a redirect/retry.
        body_pos = set_file_position(body, body_pos)
    
        try:
            # Request a connection from the queue.
            timeout_obj = self._get_timeout(timeout)
            conn = self._get_conn(timeout=pool_timeout)
    
            conn.timeout = timeout_obj.connect_timeout
    
            is_new_proxy_conn = self.proxy is not None and not getattr(
                conn, "sock", None
            )
            if is_new_proxy_conn and http_tunnel_required:
                self._prepare_proxy(conn)
    
            # Make the request on the httplib connection object.
            httplib_response = self._make_request(
                conn,
                method,
                url,
                timeout=timeout_obj,
                body=body,
                headers=headers,
                chunked=chunked,
            )
    
            # If we're going to release the connection in ``finally:``, then
            # the response doesn't need to know about the connection. Otherwise
            # it will also try to release it and we'll have a double-release
            # mess.
            response_conn = conn if not release_conn else None
    
            # Pass method to Response for length checking
            response_kw["request_method"] = method
    
            # Import httplib's response into our own wrapper object
            response = self.ResponseCls.from_httplib(
                httplib_response,
                pool=self,
                connection=response_conn,
                retries=retries,
                **response_kw
            )
    
            # Everything went great!
            clean_exit = True
    
        except EmptyPoolError:
            # Didn't get a connection from the pool, no need to clean up
            clean_exit = True
            release_this_conn = False
            raise
    
        except (
            TimeoutError,
            HTTPException,
            SocketError,
            ProtocolError,
            BaseSSLError,
            SSLError,
            CertificateError,
        ) as e:
            # Discard the connection for these exceptions. It will be
            # replaced during the next _get_conn() call.
            clean_exit = False
            if isinstance(e, (BaseSSLError, CertificateError)):
                e = SSLError(e)
            elif isinstance(e, (SocketError, NewConnectionError)) and self.proxy:
                e = ProxyError("Cannot connect to proxy.", e)
            elif isinstance(e, (SocketError, HTTPException)):
                e = ProtocolError("Connection aborted.", e)
    
>           retries = retries.increment(
                method, url, error=e, _pool=self, _stacktrace=sys.exc_info()[2]
            )

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py:755: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = Retry(total=0, connect=None, read=False, redirect=None, status=None)
method = 'POST'
url = '/api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf'
response = None
error = NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7f754ac228e0>: Failed to establish a new connection: [Errno 110] Connection timed out')
_pool = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754ac22fa0>
_stacktrace = <traceback object at 0x7f754ac29a80>

    def increment(
        self,
        method=None,
        url=None,
        response=None,
        error=None,
        _pool=None,
        _stacktrace=None,
    ):
        """Return a new Retry object with incremented retry counters.
    
        :param response: A response object, or None, if the server did not
            return a response.
        :type response: :class:`~urllib3.response.HTTPResponse`
        :param Exception error: An error encountered during the request, or
            None if the response was received successfully.
    
        :return: A new ``Retry`` object.
        """
        if self.total is False and error:
            # Disabled, indicate to re-raise the error.
            raise six.reraise(type(error), error, _stacktrace)
    
        total = self.total
        if total is not None:
            total -= 1
    
        connect = self.connect
        read = self.read
        redirect = self.redirect
        status_count = self.status
        other = self.other
        cause = "unknown"
        status = None
        redirect_location = None
    
        if error and self._is_connection_error(error):
            # Connect retry?
            if connect is False:
                raise six.reraise(type(error), error, _stacktrace)
            elif connect is not None:
                connect -= 1
    
        elif error and self._is_read_error(error):
            # Read retry?
            if read is False or not self._is_method_retryable(method):
                raise six.reraise(type(error), error, _stacktrace)
            elif read is not None:
                read -= 1
    
        elif error:
            # Other retry?
            if other is not None:
                other -= 1
    
        elif response and response.get_redirect_location():
            # Redirect retry?
            if redirect is not None:
                redirect -= 1
            cause = "too many redirects"
            redirect_location = response.get_redirect_location()
            status = response.status
    
        else:
            # Incrementing because of a server error like a 500 in
            # status_forcelist and the given method is in the allowed_methods
            cause = ResponseError.GENERIC_ERROR
            if response and response.status:
                if status_count is not None:
                    status_count -= 1
                cause = ResponseError.SPECIFIC_ERROR.format(status_code=response.status)
                status = response.status
    
        history = self.history + (
            RequestHistory(method, url, error, status, redirect_location),
        )
    
        new_retry = self.new(
            total=total,
            connect=connect,
            read=read,
            redirect=redirect,
            status=status_count,
            other=other,
            history=history,
        )
    
        if new_retry.is_exhausted():
>           raise MaxRetryError(_pool, url, error or ResponseError(cause))
E           urllib3.exceptions.MaxRetryError: HTTPSConnectionPool(host='scicrunch.org', port=443): Max retries exceeded with url: /api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7f754ac228e0>: Failed to establish a new connection: [Errno 110] Connection timed out'))

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/util/retry.py:574: MaxRetryError

During handling of the above exception, another exception occurred:

client = <FlaskClient <Flask 'app.main'>>

    def test_current_doi_list(client):
        doi_stem = "doi:"
        start = timer()
>       r = client.get('/current_doi_list')

tests/test_dataset_info.py:23: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/werkzeug/test.py:1029: in get
    return self.open(*args, **kw)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/testing.py:222: in open
    return Client.open(
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/werkzeug/test.py:993: in open
    response = self.run_wsgi_app(environ.copy(), buffered=buffered)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/werkzeug/test.py:884: in run_wsgi_app
    rv = run_wsgi_app(self.application, environ, buffered=buffered)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/werkzeug/test.py:1119: in run_wsgi_app
    app_rv = app(environ, start_response)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:2463: in __call__
    return self.wsgi_app(environ, start_response)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:2449: in wsgi_app
    response = self.handle_exception(e)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask_cors/extension.py:161: in wrapped_function
    return cors_after_request(app.make_response(f(*args, **kwargs)))
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1866: in handle_exception
    reraise(exc_type, exc_value, tb)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/_compat.py:39: in reraise
    raise value
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:2446: in wsgi_app
    response = self.full_dispatch_request()
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1951: in full_dispatch_request
    rv = self.handle_user_exception(e)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask_cors/extension.py:161: in wrapped_function
    return cors_after_request(app.make_response(f(*args, **kwargs)))
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1820: in handle_user_exception
    reraise(exc_type, exc_value, tb)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/_compat.py:39: in reraise
    raise value
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1949: in full_dispatch_request
    rv = self.dispatch_request()
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1935: in dispatch_request
    return self.view_functions[rule.endpoint](**req.view_args)
app/main.py:648: in get_all_doi
    results = reform_aggregation_results(dataset_search(query))
app/main.py:663: in dataset_search
    response = requests.post(f'{Config.SCI_CRUNCH_HOST}/_search',
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/api.py:119: in post
    return request('post', url, data=data, json=json, **kwargs)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/api.py:61: in request
    return session.request(method=method, url=url, **kwargs)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/sessions.py:542: in request
    resp = self.send(prep, **send_kwargs)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/sessions.py:655: in send
    r = adapter.send(request, **kwargs)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <requests.adapters.HTTPAdapter object at 0x7f754a957dc0>
request = <PreparedRequest [POST]>, stream = False
timeout = Timeout(connect=None, read=None, total=None), verify = True
cert = None, proxies = OrderedDict()

    def send(self, request, stream=False, timeout=None, verify=True, cert=None, proxies=None):
        """Sends PreparedRequest object. Returns Response object.
    
        :param request: The :class:`PreparedRequest <PreparedRequest>` being sent.
        :param stream: (optional) Whether to stream the request content.
        :param timeout: (optional) How long to wait for the server to send
            data before giving up, as a float, or a :ref:`(connect timeout,
            read timeout) <timeouts>` tuple.
        :type timeout: float or tuple or urllib3 Timeout object
        :param verify: (optional) Either a boolean, in which case it controls whether
            we verify the server's TLS certificate, or a string, in which case it
            must be a path to a CA bundle to use
        :param cert: (optional) Any user-provided SSL certificate to be trusted.
        :param proxies: (optional) The proxies dictionary to apply to the request.
        :rtype: requests.Response
        """
    
        try:
            conn = self.get_connection(request.url, proxies)
        except LocationValueError as e:
            raise InvalidURL(e, request=request)
    
        self.cert_verify(conn, request.url, verify, cert)
        url = self.request_url(request, proxies)
        self.add_headers(request, stream=stream, timeout=timeout, verify=verify, cert=cert, proxies=proxies)
    
        chunked = not (request.body is None or 'Content-Length' in request.headers)
    
        if isinstance(timeout, tuple):
            try:
                connect, read = timeout
                timeout = TimeoutSauce(connect=connect, read=read)
            except ValueError as e:
                # this may raise a string formatting error.
                err = ("Invalid timeout {}. Pass a (connect, read) "
                       "timeout tuple, or a single float to set "
                       "both timeouts to the same value".format(timeout))
                raise ValueError(err)
        elif isinstance(timeout, TimeoutSauce):
            pass
        else:
            timeout = TimeoutSauce(connect=timeout, read=timeout)
    
        try:
            if not chunked:
                resp = conn.urlopen(
                    method=request.method,
                    url=url,
                    body=request.body,
                    headers=request.headers,
                    redirect=False,
                    assert_same_host=False,
                    preload_content=False,
                    decode_content=False,
                    retries=self.max_retries,
                    timeout=timeout
                )
    
            # Send the request.
            else:
                if hasattr(conn, 'proxy_pool'):
                    conn = conn.proxy_pool
    
                low_conn = conn._get_conn(timeout=DEFAULT_POOL_TIMEOUT)
    
                try:
                    low_conn.putrequest(request.method,
                                        url,
                                        skip_accept_encoding=True)
    
                    for header, value in request.headers.items():
                        low_conn.putheader(header, value)
    
                    low_conn.endheaders()
    
                    for i in request.body:
                        low_conn.send(hex(len(i))[2:].encode('utf-8'))
                        low_conn.send(b'\r\n')
                        low_conn.send(i)
                        low_conn.send(b'\r\n')
                    low_conn.send(b'0\r\n\r\n')
    
                    # Receive the response from the server
                    try:
                        # For Python 2.7, use buffering of HTTP responses
                        r = low_conn.getresponse(buffering=True)
                    except TypeError:
                        # For compatibility with Python 3.3+
                        r = low_conn.getresponse()
    
                    resp = HTTPResponse.from_httplib(
                        r,
                        pool=conn,
                        connection=low_conn,
                        preload_content=False,
                        decode_content=False
                    )
                except:
                    # If we hit any problems here, clean up the connection.
                    # Then, reraise so that we can handle the actual exception.
                    low_conn.close()
                    raise
    
        except (ProtocolError, socket.error) as err:
            raise ConnectionError(err, request=request)
    
        except MaxRetryError as e:
            if isinstance(e.reason, ConnectTimeoutError):
                # TODO: Remove this in 3.0.0: see #2811
                if not isinstance(e.reason, NewConnectionError):
                    raise ConnectTimeout(e, request=request)
    
            if isinstance(e.reason, ResponseError):
                raise RetryError(e, request=request)
    
            if isinstance(e.reason, _ProxyError):
                raise ProxyError(e, request=request)
    
            if isinstance(e.reason, _SSLError):
                # This branch is for urllib3 v1.22 and later.
                raise SSLError(e, request=request)
    
>           raise ConnectionError(e, request=request)
E           requests.exceptions.ConnectionError: HTTPSConnectionPool(host='scicrunch.org', port=443): Max retries exceeded with url: /api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7f754ac228e0>: Failed to establish a new connection: [Errno 110] Connection timed out'))

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/adapters.py:516: ConnectionError
___________________ test_generic_mouse_colon_dataset_search ____________________

self = <urllib3.connection.HTTPSConnection object at 0x7f755002b610>

    def _new_conn(self):
        """Establish a socket connection and set nodelay settings on it.
    
        :return: New socket connection.
        """
        extra_kw = {}
        if self.source_address:
            extra_kw["source_address"] = self.source_address
    
        if self.socket_options:
            extra_kw["socket_options"] = self.socket_options
    
        try:
>           conn = connection.create_connection(
                (self._dns_host, self.port), self.timeout, **extra_kw
            )

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connection.py:169: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

address = ('scicrunch.org', 443), timeout = None, source_address = None
socket_options = [(6, 1, 1)]

    def create_connection(
        address,
        timeout=socket._GLOBAL_DEFAULT_TIMEOUT,
        source_address=None,
        socket_options=None,
    ):
        """Connect to *address* and return the socket object.
    
        Convenience function.  Connect to *address* (a 2-tuple ``(host,
        port)``) and return the socket object.  Passing the optional
        *timeout* parameter will set the timeout on the socket instance
        before attempting to connect.  If no *timeout* is supplied, the
        global default timeout setting returned by :func:`socket.getdefaulttimeout`
        is used.  If *source_address* is set it must be a tuple of (host, port)
        for the socket to bind as a source address before making the connection.
        An host of '' or port 0 tells the OS to use the default.
        """
    
        host, port = address
        if host.startswith("["):
            host = host.strip("[]")
        err = None
    
        # Using the value from allowed_gai_family() in the context of getaddrinfo lets
        # us select whether to work with IPv4 DNS records, IPv6 records, or both.
        # The original create_connection function always returns all records.
        family = allowed_gai_family()
    
        try:
            host.encode("idna")
        except UnicodeError:
            return six.raise_from(
                LocationParseError(u"'%s', label empty or too long" % host), None
            )
    
        for res in socket.getaddrinfo(host, port, family, socket.SOCK_STREAM):
            af, socktype, proto, canonname, sa = res
            sock = None
            try:
                sock = socket.socket(af, socktype, proto)
    
                # If provided, set socket level options before connecting.
                _set_socket_options(sock, socket_options)
    
                if timeout is not socket._GLOBAL_DEFAULT_TIMEOUT:
                    sock.settimeout(timeout)
                if source_address:
                    sock.bind(source_address)
                sock.connect(sa)
                return sock
    
            except socket.error as e:
                err = e
                if sock is not None:
                    sock.close()
                    sock = None
    
        if err is not None:
>           raise err

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/util/connection.py:96: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

address = ('scicrunch.org', 443), timeout = None, source_address = None
socket_options = [(6, 1, 1)]

    def create_connection(
        address,
        timeout=socket._GLOBAL_DEFAULT_TIMEOUT,
        source_address=None,
        socket_options=None,
    ):
        """Connect to *address* and return the socket object.
    
        Convenience function.  Connect to *address* (a 2-tuple ``(host,
        port)``) and return the socket object.  Passing the optional
        *timeout* parameter will set the timeout on the socket instance
        before attempting to connect.  If no *timeout* is supplied, the
        global default timeout setting returned by :func:`socket.getdefaulttimeout`
        is used.  If *source_address* is set it must be a tuple of (host, port)
        for the socket to bind as a source address before making the connection.
        An host of '' or port 0 tells the OS to use the default.
        """
    
        host, port = address
        if host.startswith("["):
            host = host.strip("[]")
        err = None
    
        # Using the value from allowed_gai_family() in the context of getaddrinfo lets
        # us select whether to work with IPv4 DNS records, IPv6 records, or both.
        # The original create_connection function always returns all records.
        family = allowed_gai_family()
    
        try:
            host.encode("idna")
        except UnicodeError:
            return six.raise_from(
                LocationParseError(u"'%s', label empty or too long" % host), None
            )
    
        for res in socket.getaddrinfo(host, port, family, socket.SOCK_STREAM):
            af, socktype, proto, canonname, sa = res
            sock = None
            try:
                sock = socket.socket(af, socktype, proto)
    
                # If provided, set socket level options before connecting.
                _set_socket_options(sock, socket_options)
    
                if timeout is not socket._GLOBAL_DEFAULT_TIMEOUT:
                    sock.settimeout(timeout)
                if source_address:
                    sock.bind(source_address)
>               sock.connect(sa)
E               TimeoutError: [Errno 110] Connection timed out

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/util/connection.py:86: TimeoutError

During handling of the above exception, another exception occurred:

self = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f755002b880>
method = 'POST'
url = '/api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf'
body = b'{"size": 10, "from": 0, "query": {"query_string": {"fields": ["item.name"], "query": "(Generic) AND (mouse) AND (colon) AND (scaffold)"}}}'
headers = {'User-Agent': 'python-requests/2.25.1', 'Accept-Encoding': 'gzip, deflate', 'Accept': '*/*', 'Connection': 'keep-alive', 'Content-Length': '138', 'Content-Type': 'application/json'}
retries = Retry(total=0, connect=None, read=False, redirect=None, status=None)
redirect = False, assert_same_host = False
timeout = Timeout(connect=None, read=None, total=None), pool_timeout = None
release_conn = False, chunked = False, body_pos = None
response_kw = {'decode_content': False, 'preload_content': False}
parsed_url = Url(scheme=None, auth=None, host=None, port=None, path='/api/1/elastic/SPARC_PortalDatasets_dev/_search', query='api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf', fragment=None)
destination_scheme = None, conn = None, release_this_conn = True
http_tunnel_required = False, err = None, clean_exit = False

    def urlopen(
        self,
        method,
        url,
        body=None,
        headers=None,
        retries=None,
        redirect=True,
        assert_same_host=True,
        timeout=_Default,
        pool_timeout=None,
        release_conn=None,
        chunked=False,
        body_pos=None,
        **response_kw
    ):
        """
        Get a connection from the pool and perform an HTTP request. This is the
        lowest level call for making a request, so you'll need to specify all
        the raw details.
    
        .. note::
    
           More commonly, it's appropriate to use a convenience method provided
           by :class:`.RequestMethods`, such as :meth:`request`.
    
        .. note::
    
           `release_conn` will only behave as expected if
           `preload_content=False` because we want to make
           `preload_content=False` the default behaviour someday soon without
           breaking backwards compatibility.
    
        :param method:
            HTTP request method (such as GET, POST, PUT, etc.)
    
        :param url:
            The URL to perform the request on.
    
        :param body:
            Data to send in the request body, either :class:`str`, :class:`bytes`,
            an iterable of :class:`str`/:class:`bytes`, or a file-like object.
    
        :param headers:
            Dictionary of custom headers to send, such as User-Agent,
            If-None-Match, etc. If None, pool headers are used. If provided,
            these headers completely replace any pool-specific headers.
    
        :param retries:
            Configure the number of retries to allow before raising a
            :class:`~urllib3.exceptions.MaxRetryError` exception.
    
            Pass ``None`` to retry until you receive a response. Pass a
            :class:`~urllib3.util.retry.Retry` object for fine-grained control
            over different types of retries.
            Pass an integer number to retry connection errors that many times,
            but no other types of errors. Pass zero to never retry.
    
            If ``False``, then retries are disabled and any exception is raised
            immediately. Also, instead of raising a MaxRetryError on redirects,
            the redirect response will be returned.
    
        :type retries: :class:`~urllib3.util.retry.Retry`, False, or an int.
    
        :param redirect:
            If True, automatically handle redirects (status codes 301, 302,
            303, 307, 308). Each redirect counts as a retry. Disabling retries
            will disable redirect, too.
    
        :param assert_same_host:
            If ``True``, will make sure that the host of the pool requests is
            consistent else will raise HostChangedError. When ``False``, you can
            use the pool on an HTTP proxy and request foreign hosts.
    
        :param timeout:
            If specified, overrides the default timeout for this one
            request. It may be a float (in seconds) or an instance of
            :class:`urllib3.util.Timeout`.
    
        :param pool_timeout:
            If set and the pool is set to block=True, then this method will
            block for ``pool_timeout`` seconds and raise EmptyPoolError if no
            connection is available within the time period.
    
        :param release_conn:
            If False, then the urlopen call will not release the connection
            back into the pool once a response is received (but will release if
            you read the entire contents of the response such as when
            `preload_content=True`). This is useful if you're not preloading
            the response's content immediately. You will need to call
            ``r.release_conn()`` on the response ``r`` to return the connection
            back into the pool. If None, it takes the value of
            ``response_kw.get('preload_content', True)``.
    
        :param chunked:
            If True, urllib3 will send the body using chunked transfer
            encoding. Otherwise, urllib3 will send the body using the standard
            content-length form. Defaults to False.
    
        :param int body_pos:
            Position to seek to in file-like body in the event of a retry or
            redirect. Typically this won't need to be set because urllib3 will
            auto-populate the value when needed.
    
        :param \\**response_kw:
            Additional parameters are passed to
            :meth:`urllib3.response.HTTPResponse.from_httplib`
        """
    
        parsed_url = parse_url(url)
        destination_scheme = parsed_url.scheme
    
        if headers is None:
            headers = self.headers
    
        if not isinstance(retries, Retry):
            retries = Retry.from_int(retries, redirect=redirect, default=self.retries)
    
        if release_conn is None:
            release_conn = response_kw.get("preload_content", True)
    
        # Check host
        if assert_same_host and not self.is_same_host(url):
            raise HostChangedError(self, url, retries)
    
        # Ensure that the URL we're connecting to is properly encoded
        if url.startswith("/"):
            url = six.ensure_str(_encode_target(url))
        else:
            url = six.ensure_str(parsed_url.url)
    
        conn = None
    
        # Track whether `conn` needs to be released before
        # returning/raising/recursing. Update this variable if necessary, and
        # leave `release_conn` constant throughout the function. That way, if
        # the function recurses, the original value of `release_conn` will be
        # passed down into the recursive call, and its value will be respected.
        #
        # See issue #651 [1] for details.
        #
        # [1] <https://github.com/urllib3/urllib3/issues/651>
        release_this_conn = release_conn
    
        http_tunnel_required = connection_requires_http_tunnel(
            self.proxy, self.proxy_config, destination_scheme
        )
    
        # Merge the proxy headers. Only done when not using HTTP CONNECT. We
        # have to copy the headers dict so we can safely change it without those
        # changes being reflected in anyone else's copy.
        if not http_tunnel_required:
            headers = headers.copy()
            headers.update(self.proxy_headers)
    
        # Must keep the exception bound to a separate variable or else Python 3
        # complains about UnboundLocalError.
        err = None
    
        # Keep track of whether we cleanly exited the except block. This
        # ensures we do proper cleanup in finally.
        clean_exit = False
    
        # Rewind body position, if needed. Record current position
        # for future rewinds in the event of a redirect/retry.
        body_pos = set_file_position(body, body_pos)
    
        try:
            # Request a connection from the queue.
            timeout_obj = self._get_timeout(timeout)
            conn = self._get_conn(timeout=pool_timeout)
    
            conn.timeout = timeout_obj.connect_timeout
    
            is_new_proxy_conn = self.proxy is not None and not getattr(
                conn, "sock", None
            )
            if is_new_proxy_conn and http_tunnel_required:
                self._prepare_proxy(conn)
    
            # Make the request on the httplib connection object.
>           httplib_response = self._make_request(
                conn,
                method,
                url,
                timeout=timeout_obj,
                body=body,
                headers=headers,
                chunked=chunked,
            )

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py:699: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f755002b880>
conn = <urllib3.connection.HTTPSConnection object at 0x7f755002b610>
method = 'POST'
url = '/api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf'
timeout = Timeout(connect=None, read=None, total=None), chunked = False
httplib_request_kw = {'body': b'{"size": 10, "from": 0, "query": {"query_string": {"fields": ["item.name"], "query": "(Generic) AND (mouse)...p, deflate', 'Accept': '*/*', 'Connection': 'keep-alive', 'Content-Length': '138', 'Content-Type': 'application/json'}}
timeout_obj = Timeout(connect=None, read=None, total=None)

    def _make_request(
        self, conn, method, url, timeout=_Default, chunked=False, **httplib_request_kw
    ):
        """
        Perform a request on a given urllib connection object taken from our
        pool.
    
        :param conn:
            a connection from one of our connection pools
    
        :param timeout:
            Socket timeout in seconds for the request. This can be a
            float or integer, which will set the same timeout value for
            the socket connect and the socket read, or an instance of
            :class:`urllib3.util.Timeout`, which gives you more fine-grained
            control over your timeouts.
        """
        self.num_requests += 1
    
        timeout_obj = self._get_timeout(timeout)
        timeout_obj.start_connect()
        conn.timeout = timeout_obj.connect_timeout
    
        # Trigger any extra validation we need to do.
        try:
>           self._validate_conn(conn)

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py:382: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f755002b880>
conn = <urllib3.connection.HTTPSConnection object at 0x7f755002b610>

    def _validate_conn(self, conn):
        """
        Called right before a request is made, after the socket is created.
        """
        super(HTTPSConnectionPool, self)._validate_conn(conn)
    
        # Force connect early to allow us to validate the connection.
        if not getattr(conn, "sock", None):  # AppEngine might not have  `.sock`
>           conn.connect()

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py:1010: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connection.HTTPSConnection object at 0x7f755002b610>

    def connect(self):
        # Add certificate verification
>       conn = self._new_conn()

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connection.py:353: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connection.HTTPSConnection object at 0x7f755002b610>

    def _new_conn(self):
        """Establish a socket connection and set nodelay settings on it.
    
        :return: New socket connection.
        """
        extra_kw = {}
        if self.source_address:
            extra_kw["source_address"] = self.source_address
    
        if self.socket_options:
            extra_kw["socket_options"] = self.socket_options
    
        try:
            conn = connection.create_connection(
                (self._dns_host, self.port), self.timeout, **extra_kw
            )
    
        except SocketTimeout:
            raise ConnectTimeoutError(
                self,
                "Connection to %s timed out. (connect timeout=%s)"
                % (self.host, self.timeout),
            )
    
        except SocketError as e:
>           raise NewConnectionError(
                self, "Failed to establish a new connection: %s" % e
            )
E           urllib3.exceptions.NewConnectionError: <urllib3.connection.HTTPSConnection object at 0x7f755002b610>: Failed to establish a new connection: [Errno 110] Connection timed out

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connection.py:181: NewConnectionError

During handling of the above exception, another exception occurred:

self = <requests.adapters.HTTPAdapter object at 0x7f755002bd30>
request = <PreparedRequest [POST]>, stream = False
timeout = Timeout(connect=None, read=None, total=None), verify = True
cert = None, proxies = OrderedDict()

    def send(self, request, stream=False, timeout=None, verify=True, cert=None, proxies=None):
        """Sends PreparedRequest object. Returns Response object.
    
        :param request: The :class:`PreparedRequest <PreparedRequest>` being sent.
        :param stream: (optional) Whether to stream the request content.
        :param timeout: (optional) How long to wait for the server to send
            data before giving up, as a float, or a :ref:`(connect timeout,
            read timeout) <timeouts>` tuple.
        :type timeout: float or tuple or urllib3 Timeout object
        :param verify: (optional) Either a boolean, in which case it controls whether
            we verify the server's TLS certificate, or a string, in which case it
            must be a path to a CA bundle to use
        :param cert: (optional) Any user-provided SSL certificate to be trusted.
        :param proxies: (optional) The proxies dictionary to apply to the request.
        :rtype: requests.Response
        """
    
        try:
            conn = self.get_connection(request.url, proxies)
        except LocationValueError as e:
            raise InvalidURL(e, request=request)
    
        self.cert_verify(conn, request.url, verify, cert)
        url = self.request_url(request, proxies)
        self.add_headers(request, stream=stream, timeout=timeout, verify=verify, cert=cert, proxies=proxies)
    
        chunked = not (request.body is None or 'Content-Length' in request.headers)
    
        if isinstance(timeout, tuple):
            try:
                connect, read = timeout
                timeout = TimeoutSauce(connect=connect, read=read)
            except ValueError as e:
                # this may raise a string formatting error.
                err = ("Invalid timeout {}. Pass a (connect, read) "
                       "timeout tuple, or a single float to set "
                       "both timeouts to the same value".format(timeout))
                raise ValueError(err)
        elif isinstance(timeout, TimeoutSauce):
            pass
        else:
            timeout = TimeoutSauce(connect=timeout, read=timeout)
    
        try:
            if not chunked:
>               resp = conn.urlopen(
                    method=request.method,
                    url=url,
                    body=request.body,
                    headers=request.headers,
                    redirect=False,
                    assert_same_host=False,
                    preload_content=False,
                    decode_content=False,
                    retries=self.max_retries,
                    timeout=timeout
                )

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/adapters.py:439: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f755002b880>
method = 'POST'
url = '/api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf'
body = b'{"size": 10, "from": 0, "query": {"query_string": {"fields": ["item.name"], "query": "(Generic) AND (mouse) AND (colon) AND (scaffold)"}}}'
headers = {'User-Agent': 'python-requests/2.25.1', 'Accept-Encoding': 'gzip, deflate', 'Accept': '*/*', 'Connection': 'keep-alive', 'Content-Length': '138', 'Content-Type': 'application/json'}
retries = Retry(total=0, connect=None, read=False, redirect=None, status=None)
redirect = False, assert_same_host = False
timeout = Timeout(connect=None, read=None, total=None), pool_timeout = None
release_conn = False, chunked = False, body_pos = None
response_kw = {'decode_content': False, 'preload_content': False}
parsed_url = Url(scheme=None, auth=None, host=None, port=None, path='/api/1/elastic/SPARC_PortalDatasets_dev/_search', query='api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf', fragment=None)
destination_scheme = None, conn = None, release_this_conn = True
http_tunnel_required = False, err = None, clean_exit = False

    def urlopen(
        self,
        method,
        url,
        body=None,
        headers=None,
        retries=None,
        redirect=True,
        assert_same_host=True,
        timeout=_Default,
        pool_timeout=None,
        release_conn=None,
        chunked=False,
        body_pos=None,
        **response_kw
    ):
        """
        Get a connection from the pool and perform an HTTP request. This is the
        lowest level call for making a request, so you'll need to specify all
        the raw details.
    
        .. note::
    
           More commonly, it's appropriate to use a convenience method provided
           by :class:`.RequestMethods`, such as :meth:`request`.
    
        .. note::
    
           `release_conn` will only behave as expected if
           `preload_content=False` because we want to make
           `preload_content=False` the default behaviour someday soon without
           breaking backwards compatibility.
    
        :param method:
            HTTP request method (such as GET, POST, PUT, etc.)
    
        :param url:
            The URL to perform the request on.
    
        :param body:
            Data to send in the request body, either :class:`str`, :class:`bytes`,
            an iterable of :class:`str`/:class:`bytes`, or a file-like object.
    
        :param headers:
            Dictionary of custom headers to send, such as User-Agent,
            If-None-Match, etc. If None, pool headers are used. If provided,
            these headers completely replace any pool-specific headers.
    
        :param retries:
            Configure the number of retries to allow before raising a
            :class:`~urllib3.exceptions.MaxRetryError` exception.
    
            Pass ``None`` to retry until you receive a response. Pass a
            :class:`~urllib3.util.retry.Retry` object for fine-grained control
            over different types of retries.
            Pass an integer number to retry connection errors that many times,
            but no other types of errors. Pass zero to never retry.
    
            If ``False``, then retries are disabled and any exception is raised
            immediately. Also, instead of raising a MaxRetryError on redirects,
            the redirect response will be returned.
    
        :type retries: :class:`~urllib3.util.retry.Retry`, False, or an int.
    
        :param redirect:
            If True, automatically handle redirects (status codes 301, 302,
            303, 307, 308). Each redirect counts as a retry. Disabling retries
            will disable redirect, too.
    
        :param assert_same_host:
            If ``True``, will make sure that the host of the pool requests is
            consistent else will raise HostChangedError. When ``False``, you can
            use the pool on an HTTP proxy and request foreign hosts.
    
        :param timeout:
            If specified, overrides the default timeout for this one
            request. It may be a float (in seconds) or an instance of
            :class:`urllib3.util.Timeout`.
    
        :param pool_timeout:
            If set and the pool is set to block=True, then this method will
            block for ``pool_timeout`` seconds and raise EmptyPoolError if no
            connection is available within the time period.
    
        :param release_conn:
            If False, then the urlopen call will not release the connection
            back into the pool once a response is received (but will release if
            you read the entire contents of the response such as when
            `preload_content=True`). This is useful if you're not preloading
            the response's content immediately. You will need to call
            ``r.release_conn()`` on the response ``r`` to return the connection
            back into the pool. If None, it takes the value of
            ``response_kw.get('preload_content', True)``.
    
        :param chunked:
            If True, urllib3 will send the body using chunked transfer
            encoding. Otherwise, urllib3 will send the body using the standard
            content-length form. Defaults to False.
    
        :param int body_pos:
            Position to seek to in file-like body in the event of a retry or
            redirect. Typically this won't need to be set because urllib3 will
            auto-populate the value when needed.
    
        :param \\**response_kw:
            Additional parameters are passed to
            :meth:`urllib3.response.HTTPResponse.from_httplib`
        """
    
        parsed_url = parse_url(url)
        destination_scheme = parsed_url.scheme
    
        if headers is None:
            headers = self.headers
    
        if not isinstance(retries, Retry):
            retries = Retry.from_int(retries, redirect=redirect, default=self.retries)
    
        if release_conn is None:
            release_conn = response_kw.get("preload_content", True)
    
        # Check host
        if assert_same_host and not self.is_same_host(url):
            raise HostChangedError(self, url, retries)
    
        # Ensure that the URL we're connecting to is properly encoded
        if url.startswith("/"):
            url = six.ensure_str(_encode_target(url))
        else:
            url = six.ensure_str(parsed_url.url)
    
        conn = None
    
        # Track whether `conn` needs to be released before
        # returning/raising/recursing. Update this variable if necessary, and
        # leave `release_conn` constant throughout the function. That way, if
        # the function recurses, the original value of `release_conn` will be
        # passed down into the recursive call, and its value will be respected.
        #
        # See issue #651 [1] for details.
        #
        # [1] <https://github.com/urllib3/urllib3/issues/651>
        release_this_conn = release_conn
    
        http_tunnel_required = connection_requires_http_tunnel(
            self.proxy, self.proxy_config, destination_scheme
        )
    
        # Merge the proxy headers. Only done when not using HTTP CONNECT. We
        # have to copy the headers dict so we can safely change it without those
        # changes being reflected in anyone else's copy.
        if not http_tunnel_required:
            headers = headers.copy()
            headers.update(self.proxy_headers)
    
        # Must keep the exception bound to a separate variable or else Python 3
        # complains about UnboundLocalError.
        err = None
    
        # Keep track of whether we cleanly exited the except block. This
        # ensures we do proper cleanup in finally.
        clean_exit = False
    
        # Rewind body position, if needed. Record current position
        # for future rewinds in the event of a redirect/retry.
        body_pos = set_file_position(body, body_pos)
    
        try:
            # Request a connection from the queue.
            timeout_obj = self._get_timeout(timeout)
            conn = self._get_conn(timeout=pool_timeout)
    
            conn.timeout = timeout_obj.connect_timeout
    
            is_new_proxy_conn = self.proxy is not None and not getattr(
                conn, "sock", None
            )
            if is_new_proxy_conn and http_tunnel_required:
                self._prepare_proxy(conn)
    
            # Make the request on the httplib connection object.
            httplib_response = self._make_request(
                conn,
                method,
                url,
                timeout=timeout_obj,
                body=body,
                headers=headers,
                chunked=chunked,
            )
    
            # If we're going to release the connection in ``finally:``, then
            # the response doesn't need to know about the connection. Otherwise
            # it will also try to release it and we'll have a double-release
            # mess.
            response_conn = conn if not release_conn else None
    
            # Pass method to Response for length checking
            response_kw["request_method"] = method
    
            # Import httplib's response into our own wrapper object
            response = self.ResponseCls.from_httplib(
                httplib_response,
                pool=self,
                connection=response_conn,
                retries=retries,
                **response_kw
            )
    
            # Everything went great!
            clean_exit = True
    
        except EmptyPoolError:
            # Didn't get a connection from the pool, no need to clean up
            clean_exit = True
            release_this_conn = False
            raise
    
        except (
            TimeoutError,
            HTTPException,
            SocketError,
            ProtocolError,
            BaseSSLError,
            SSLError,
            CertificateError,
        ) as e:
            # Discard the connection for these exceptions. It will be
            # replaced during the next _get_conn() call.
            clean_exit = False
            if isinstance(e, (BaseSSLError, CertificateError)):
                e = SSLError(e)
            elif isinstance(e, (SocketError, NewConnectionError)) and self.proxy:
                e = ProxyError("Cannot connect to proxy.", e)
            elif isinstance(e, (SocketError, HTTPException)):
                e = ProtocolError("Connection aborted.", e)
    
>           retries = retries.increment(
                method, url, error=e, _pool=self, _stacktrace=sys.exc_info()[2]
            )

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py:755: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = Retry(total=0, connect=None, read=False, redirect=None, status=None)
method = 'POST'
url = '/api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf'
response = None
error = NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7f755002b610>: Failed to establish a new connection: [Errno 110] Connection timed out')
_pool = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f755002b880>
_stacktrace = <traceback object at 0x7f754a7e9c40>

    def increment(
        self,
        method=None,
        url=None,
        response=None,
        error=None,
        _pool=None,
        _stacktrace=None,
    ):
        """Return a new Retry object with incremented retry counters.
    
        :param response: A response object, or None, if the server did not
            return a response.
        :type response: :class:`~urllib3.response.HTTPResponse`
        :param Exception error: An error encountered during the request, or
            None if the response was received successfully.
    
        :return: A new ``Retry`` object.
        """
        if self.total is False and error:
            # Disabled, indicate to re-raise the error.
            raise six.reraise(type(error), error, _stacktrace)
    
        total = self.total
        if total is not None:
            total -= 1
    
        connect = self.connect
        read = self.read
        redirect = self.redirect
        status_count = self.status
        other = self.other
        cause = "unknown"
        status = None
        redirect_location = None
    
        if error and self._is_connection_error(error):
            # Connect retry?
            if connect is False:
                raise six.reraise(type(error), error, _stacktrace)
            elif connect is not None:
                connect -= 1
    
        elif error and self._is_read_error(error):
            # Read retry?
            if read is False or not self._is_method_retryable(method):
                raise six.reraise(type(error), error, _stacktrace)
            elif read is not None:
                read -= 1
    
        elif error:
            # Other retry?
            if other is not None:
                other -= 1
    
        elif response and response.get_redirect_location():
            # Redirect retry?
            if redirect is not None:
                redirect -= 1
            cause = "too many redirects"
            redirect_location = response.get_redirect_location()
            status = response.status
    
        else:
            # Incrementing because of a server error like a 500 in
            # status_forcelist and the given method is in the allowed_methods
            cause = ResponseError.GENERIC_ERROR
            if response and response.status:
                if status_count is not None:
                    status_count -= 1
                cause = ResponseError.SPECIFIC_ERROR.format(status_code=response.status)
                status = response.status
    
        history = self.history + (
            RequestHistory(method, url, error, status, redirect_location),
        )
    
        new_retry = self.new(
            total=total,
            connect=connect,
            read=read,
            redirect=redirect,
            status=status_count,
            other=other,
            history=history,
        )
    
        if new_retry.is_exhausted():
>           raise MaxRetryError(_pool, url, error or ResponseError(cause))
E           urllib3.exceptions.MaxRetryError: HTTPSConnectionPool(host='scicrunch.org', port=443): Max retries exceeded with url: /api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7f755002b610>: Failed to establish a new connection: [Errno 110] Connection timed out'))

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/util/retry.py:574: MaxRetryError

During handling of the above exception, another exception occurred:

client = <FlaskClient <Flask 'app.main'>>

    def test_generic_mouse_colon_dataset_search(client):
        title = "Generic mouse colon scaffold"
        start = timer()
>       r = client.get('/dataset_info/using_title', query_string={'title': title})

tests/test_dataset_info.py:132: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/werkzeug/test.py:1029: in get
    return self.open(*args, **kw)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/testing.py:222: in open
    return Client.open(
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/werkzeug/test.py:993: in open
    response = self.run_wsgi_app(environ.copy(), buffered=buffered)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/werkzeug/test.py:884: in run_wsgi_app
    rv = run_wsgi_app(self.application, environ, buffered=buffered)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/werkzeug/test.py:1119: in run_wsgi_app
    app_rv = app(environ, start_response)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:2463: in __call__
    return self.wsgi_app(environ, start_response)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:2449: in wsgi_app
    response = self.handle_exception(e)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask_cors/extension.py:161: in wrapped_function
    return cors_after_request(app.make_response(f(*args, **kwargs)))
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1866: in handle_exception
    reraise(exc_type, exc_value, tb)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/_compat.py:39: in reraise
    raise value
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:2446: in wsgi_app
    response = self.full_dispatch_request()
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1951: in full_dispatch_request
    rv = self.handle_user_exception(e)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask_cors/extension.py:161: in wrapped_function
    return cors_after_request(app.make_response(f(*args, **kwargs)))
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1820: in handle_user_exception
    reraise(exc_type, exc_value, tb)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/_compat.py:39: in reraise
    raise value
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1949: in full_dispatch_request
    rv = self.dispatch_request()
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1935: in dispatch_request
    return self.view_functions[rule.endpoint](**req.view_args)
app/main.py:575: in get_dataset_info_title
    return reform_dataset_results(dataset_search(query))
app/main.py:663: in dataset_search
    response = requests.post(f'{Config.SCI_CRUNCH_HOST}/_search',
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/api.py:119: in post
    return request('post', url, data=data, json=json, **kwargs)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/api.py:61: in request
    return session.request(method=method, url=url, **kwargs)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/sessions.py:542: in request
    resp = self.send(prep, **send_kwargs)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/sessions.py:655: in send
    r = adapter.send(request, **kwargs)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <requests.adapters.HTTPAdapter object at 0x7f755002bd30>
request = <PreparedRequest [POST]>, stream = False
timeout = Timeout(connect=None, read=None, total=None), verify = True
cert = None, proxies = OrderedDict()

    def send(self, request, stream=False, timeout=None, verify=True, cert=None, proxies=None):
        """Sends PreparedRequest object. Returns Response object.
    
        :param request: The :class:`PreparedRequest <PreparedRequest>` being sent.
        :param stream: (optional) Whether to stream the request content.
        :param timeout: (optional) How long to wait for the server to send
            data before giving up, as a float, or a :ref:`(connect timeout,
            read timeout) <timeouts>` tuple.
        :type timeout: float or tuple or urllib3 Timeout object
        :param verify: (optional) Either a boolean, in which case it controls whether
            we verify the server's TLS certificate, or a string, in which case it
            must be a path to a CA bundle to use
        :param cert: (optional) Any user-provided SSL certificate to be trusted.
        :param proxies: (optional) The proxies dictionary to apply to the request.
        :rtype: requests.Response
        """
    
        try:
            conn = self.get_connection(request.url, proxies)
        except LocationValueError as e:
            raise InvalidURL(e, request=request)
    
        self.cert_verify(conn, request.url, verify, cert)
        url = self.request_url(request, proxies)
        self.add_headers(request, stream=stream, timeout=timeout, verify=verify, cert=cert, proxies=proxies)
    
        chunked = not (request.body is None or 'Content-Length' in request.headers)
    
        if isinstance(timeout, tuple):
            try:
                connect, read = timeout
                timeout = TimeoutSauce(connect=connect, read=read)
            except ValueError as e:
                # this may raise a string formatting error.
                err = ("Invalid timeout {}. Pass a (connect, read) "
                       "timeout tuple, or a single float to set "
                       "both timeouts to the same value".format(timeout))
                raise ValueError(err)
        elif isinstance(timeout, TimeoutSauce):
            pass
        else:
            timeout = TimeoutSauce(connect=timeout, read=timeout)
    
        try:
            if not chunked:
                resp = conn.urlopen(
                    method=request.method,
                    url=url,
                    body=request.body,
                    headers=request.headers,
                    redirect=False,
                    assert_same_host=False,
                    preload_content=False,
                    decode_content=False,
                    retries=self.max_retries,
                    timeout=timeout
                )
    
            # Send the request.
            else:
                if hasattr(conn, 'proxy_pool'):
                    conn = conn.proxy_pool
    
                low_conn = conn._get_conn(timeout=DEFAULT_POOL_TIMEOUT)
    
                try:
                    low_conn.putrequest(request.method,
                                        url,
                                        skip_accept_encoding=True)
    
                    for header, value in request.headers.items():
                        low_conn.putheader(header, value)
    
                    low_conn.endheaders()
    
                    for i in request.body:
                        low_conn.send(hex(len(i))[2:].encode('utf-8'))
                        low_conn.send(b'\r\n')
                        low_conn.send(i)
                        low_conn.send(b'\r\n')
                    low_conn.send(b'0\r\n\r\n')
    
                    # Receive the response from the server
                    try:
                        # For Python 2.7, use buffering of HTTP responses
                        r = low_conn.getresponse(buffering=True)
                    except TypeError:
                        # For compatibility with Python 3.3+
                        r = low_conn.getresponse()
    
                    resp = HTTPResponse.from_httplib(
                        r,
                        pool=conn,
                        connection=low_conn,
                        preload_content=False,
                        decode_content=False
                    )
                except:
                    # If we hit any problems here, clean up the connection.
                    # Then, reraise so that we can handle the actual exception.
                    low_conn.close()
                    raise
    
        except (ProtocolError, socket.error) as err:
            raise ConnectionError(err, request=request)
    
        except MaxRetryError as e:
            if isinstance(e.reason, ConnectTimeoutError):
                # TODO: Remove this in 3.0.0: see #2811
                if not isinstance(e.reason, NewConnectionError):
                    raise ConnectTimeout(e, request=request)
    
            if isinstance(e.reason, ResponseError):
                raise RetryError(e, request=request)
    
            if isinstance(e.reason, _ProxyError):
                raise ProxyError(e, request=request)
    
            if isinstance(e.reason, _SSLError):
                # This branch is for urllib3 v1.22 and later.
                raise SSLError(e, request=request)
    
>           raise ConnectionError(e, request=request)
E           requests.exceptions.ConnectionError: HTTPSConnectionPool(host='scicrunch.org', port=443): Max retries exceeded with url: /api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7f755002b610>: Failed to establish a new connection: [Errno 110] Connection timed out'))

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/adapters.py:516: ConnectionError
______________________ test_complex_title_dataset_search _______________________

self = <urllib3.connection.HTTPSConnection object at 0x7f754acccbe0>

    def _new_conn(self):
        """Establish a socket connection and set nodelay settings on it.
    
        :return: New socket connection.
        """
        extra_kw = {}
        if self.source_address:
            extra_kw["source_address"] = self.source_address
    
        if self.socket_options:
            extra_kw["socket_options"] = self.socket_options
    
        try:
>           conn = connection.create_connection(
                (self._dns_host, self.port), self.timeout, **extra_kw
            )

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connection.py:169: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

address = ('scicrunch.org', 443), timeout = None, source_address = None
socket_options = [(6, 1, 1)]

    def create_connection(
        address,
        timeout=socket._GLOBAL_DEFAULT_TIMEOUT,
        source_address=None,
        socket_options=None,
    ):
        """Connect to *address* and return the socket object.
    
        Convenience function.  Connect to *address* (a 2-tuple ``(host,
        port)``) and return the socket object.  Passing the optional
        *timeout* parameter will set the timeout on the socket instance
        before attempting to connect.  If no *timeout* is supplied, the
        global default timeout setting returned by :func:`socket.getdefaulttimeout`
        is used.  If *source_address* is set it must be a tuple of (host, port)
        for the socket to bind as a source address before making the connection.
        An host of '' or port 0 tells the OS to use the default.
        """
    
        host, port = address
        if host.startswith("["):
            host = host.strip("[]")
        err = None
    
        # Using the value from allowed_gai_family() in the context of getaddrinfo lets
        # us select whether to work with IPv4 DNS records, IPv6 records, or both.
        # The original create_connection function always returns all records.
        family = allowed_gai_family()
    
        try:
            host.encode("idna")
        except UnicodeError:
            return six.raise_from(
                LocationParseError(u"'%s', label empty or too long" % host), None
            )
    
        for res in socket.getaddrinfo(host, port, family, socket.SOCK_STREAM):
            af, socktype, proto, canonname, sa = res
            sock = None
            try:
                sock = socket.socket(af, socktype, proto)
    
                # If provided, set socket level options before connecting.
                _set_socket_options(sock, socket_options)
    
                if timeout is not socket._GLOBAL_DEFAULT_TIMEOUT:
                    sock.settimeout(timeout)
                if source_address:
                    sock.bind(source_address)
                sock.connect(sa)
                return sock
    
            except socket.error as e:
                err = e
                if sock is not None:
                    sock.close()
                    sock = None
    
        if err is not None:
>           raise err

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/util/connection.py:96: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

address = ('scicrunch.org', 443), timeout = None, source_address = None
socket_options = [(6, 1, 1)]

    def create_connection(
        address,
        timeout=socket._GLOBAL_DEFAULT_TIMEOUT,
        source_address=None,
        socket_options=None,
    ):
        """Connect to *address* and return the socket object.
    
        Convenience function.  Connect to *address* (a 2-tuple ``(host,
        port)``) and return the socket object.  Passing the optional
        *timeout* parameter will set the timeout on the socket instance
        before attempting to connect.  If no *timeout* is supplied, the
        global default timeout setting returned by :func:`socket.getdefaulttimeout`
        is used.  If *source_address* is set it must be a tuple of (host, port)
        for the socket to bind as a source address before making the connection.
        An host of '' or port 0 tells the OS to use the default.
        """
    
        host, port = address
        if host.startswith("["):
            host = host.strip("[]")
        err = None
    
        # Using the value from allowed_gai_family() in the context of getaddrinfo lets
        # us select whether to work with IPv4 DNS records, IPv6 records, or both.
        # The original create_connection function always returns all records.
        family = allowed_gai_family()
    
        try:
            host.encode("idna")
        except UnicodeError:
            return six.raise_from(
                LocationParseError(u"'%s', label empty or too long" % host), None
            )
    
        for res in socket.getaddrinfo(host, port, family, socket.SOCK_STREAM):
            af, socktype, proto, canonname, sa = res
            sock = None
            try:
                sock = socket.socket(af, socktype, proto)
    
                # If provided, set socket level options before connecting.
                _set_socket_options(sock, socket_options)
    
                if timeout is not socket._GLOBAL_DEFAULT_TIMEOUT:
                    sock.settimeout(timeout)
                if source_address:
                    sock.bind(source_address)
>               sock.connect(sa)
E               TimeoutError: [Errno 110] Connection timed out

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/util/connection.py:86: TimeoutError

During handling of the above exception, another exception occurred:

self = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754ad03130>
method = 'POST'
url = '/api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf'
body = b'{"size": 10, "from": 0, "query": {"query_string": {"fields": ["item.name"], "query": "(Spatial) AND (distribution) A...nts) AND (associated) AND (with) AND (the) AND (myenteric) AND (plexus) AND (of) AND (the) AND (rat) AND (stomach)"}}}'
headers = {'User-Agent': 'python-requests/2.25.1', 'Accept-Encoding': 'gzip, deflate', 'Accept': '*/*', 'Connection': 'keep-alive', 'Content-Length': '317', 'Content-Type': 'application/json'}
retries = Retry(total=0, connect=None, read=False, redirect=None, status=None)
redirect = False, assert_same_host = False
timeout = Timeout(connect=None, read=None, total=None), pool_timeout = None
release_conn = False, chunked = False, body_pos = None
response_kw = {'decode_content': False, 'preload_content': False}
parsed_url = Url(scheme=None, auth=None, host=None, port=None, path='/api/1/elastic/SPARC_PortalDatasets_dev/_search', query='api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf', fragment=None)
destination_scheme = None, conn = None, release_this_conn = True
http_tunnel_required = False, err = None, clean_exit = False

    def urlopen(
        self,
        method,
        url,
        body=None,
        headers=None,
        retries=None,
        redirect=True,
        assert_same_host=True,
        timeout=_Default,
        pool_timeout=None,
        release_conn=None,
        chunked=False,
        body_pos=None,
        **response_kw
    ):
        """
        Get a connection from the pool and perform an HTTP request. This is the
        lowest level call for making a request, so you'll need to specify all
        the raw details.
    
        .. note::
    
           More commonly, it's appropriate to use a convenience method provided
           by :class:`.RequestMethods`, such as :meth:`request`.
    
        .. note::
    
           `release_conn` will only behave as expected if
           `preload_content=False` because we want to make
           `preload_content=False` the default behaviour someday soon without
           breaking backwards compatibility.
    
        :param method:
            HTTP request method (such as GET, POST, PUT, etc.)
    
        :param url:
            The URL to perform the request on.
    
        :param body:
            Data to send in the request body, either :class:`str`, :class:`bytes`,
            an iterable of :class:`str`/:class:`bytes`, or a file-like object.
    
        :param headers:
            Dictionary of custom headers to send, such as User-Agent,
            If-None-Match, etc. If None, pool headers are used. If provided,
            these headers completely replace any pool-specific headers.
    
        :param retries:
            Configure the number of retries to allow before raising a
            :class:`~urllib3.exceptions.MaxRetryError` exception.
    
            Pass ``None`` to retry until you receive a response. Pass a
            :class:`~urllib3.util.retry.Retry` object for fine-grained control
            over different types of retries.
            Pass an integer number to retry connection errors that many times,
            but no other types of errors. Pass zero to never retry.
    
            If ``False``, then retries are disabled and any exception is raised
            immediately. Also, instead of raising a MaxRetryError on redirects,
            the redirect response will be returned.
    
        :type retries: :class:`~urllib3.util.retry.Retry`, False, or an int.
    
        :param redirect:
            If True, automatically handle redirects (status codes 301, 302,
            303, 307, 308). Each redirect counts as a retry. Disabling retries
            will disable redirect, too.
    
        :param assert_same_host:
            If ``True``, will make sure that the host of the pool requests is
            consistent else will raise HostChangedError. When ``False``, you can
            use the pool on an HTTP proxy and request foreign hosts.
    
        :param timeout:
            If specified, overrides the default timeout for this one
            request. It may be a float (in seconds) or an instance of
            :class:`urllib3.util.Timeout`.
    
        :param pool_timeout:
            If set and the pool is set to block=True, then this method will
            block for ``pool_timeout`` seconds and raise EmptyPoolError if no
            connection is available within the time period.
    
        :param release_conn:
            If False, then the urlopen call will not release the connection
            back into the pool once a response is received (but will release if
            you read the entire contents of the response such as when
            `preload_content=True`). This is useful if you're not preloading
            the response's content immediately. You will need to call
            ``r.release_conn()`` on the response ``r`` to return the connection
            back into the pool. If None, it takes the value of
            ``response_kw.get('preload_content', True)``.
    
        :param chunked:
            If True, urllib3 will send the body using chunked transfer
            encoding. Otherwise, urllib3 will send the body using the standard
            content-length form. Defaults to False.
    
        :param int body_pos:
            Position to seek to in file-like body in the event of a retry or
            redirect. Typically this won't need to be set because urllib3 will
            auto-populate the value when needed.
    
        :param \\**response_kw:
            Additional parameters are passed to
            :meth:`urllib3.response.HTTPResponse.from_httplib`
        """
    
        parsed_url = parse_url(url)
        destination_scheme = parsed_url.scheme
    
        if headers is None:
            headers = self.headers
    
        if not isinstance(retries, Retry):
            retries = Retry.from_int(retries, redirect=redirect, default=self.retries)
    
        if release_conn is None:
            release_conn = response_kw.get("preload_content", True)
    
        # Check host
        if assert_same_host and not self.is_same_host(url):
            raise HostChangedError(self, url, retries)
    
        # Ensure that the URL we're connecting to is properly encoded
        if url.startswith("/"):
            url = six.ensure_str(_encode_target(url))
        else:
            url = six.ensure_str(parsed_url.url)
    
        conn = None
    
        # Track whether `conn` needs to be released before
        # returning/raising/recursing. Update this variable if necessary, and
        # leave `release_conn` constant throughout the function. That way, if
        # the function recurses, the original value of `release_conn` will be
        # passed down into the recursive call, and its value will be respected.
        #
        # See issue #651 [1] for details.
        #
        # [1] <https://github.com/urllib3/urllib3/issues/651>
        release_this_conn = release_conn
    
        http_tunnel_required = connection_requires_http_tunnel(
            self.proxy, self.proxy_config, destination_scheme
        )
    
        # Merge the proxy headers. Only done when not using HTTP CONNECT. We
        # have to copy the headers dict so we can safely change it without those
        # changes being reflected in anyone else's copy.
        if not http_tunnel_required:
            headers = headers.copy()
            headers.update(self.proxy_headers)
    
        # Must keep the exception bound to a separate variable or else Python 3
        # complains about UnboundLocalError.
        err = None
    
        # Keep track of whether we cleanly exited the except block. This
        # ensures we do proper cleanup in finally.
        clean_exit = False
    
        # Rewind body position, if needed. Record current position
        # for future rewinds in the event of a redirect/retry.
        body_pos = set_file_position(body, body_pos)
    
        try:
            # Request a connection from the queue.
            timeout_obj = self._get_timeout(timeout)
            conn = self._get_conn(timeout=pool_timeout)
    
            conn.timeout = timeout_obj.connect_timeout
    
            is_new_proxy_conn = self.proxy is not None and not getattr(
                conn, "sock", None
            )
            if is_new_proxy_conn and http_tunnel_required:
                self._prepare_proxy(conn)
    
            # Make the request on the httplib connection object.
>           httplib_response = self._make_request(
                conn,
                method,
                url,
                timeout=timeout_obj,
                body=body,
                headers=headers,
                chunked=chunked,
            )

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py:699: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754ad03130>
conn = <urllib3.connection.HTTPSConnection object at 0x7f754acccbe0>
method = 'POST'
url = '/api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf'
timeout = Timeout(connect=None, read=None, total=None), chunked = False
httplib_request_kw = {'body': b'{"size": 10, "from": 0, "query": {"query_string": {"fields": ["item.name"], "query": "(Spatial) AND (distri...p, deflate', 'Accept': '*/*', 'Connection': 'keep-alive', 'Content-Length': '317', 'Content-Type': 'application/json'}}
timeout_obj = Timeout(connect=None, read=None, total=None)

    def _make_request(
        self, conn, method, url, timeout=_Default, chunked=False, **httplib_request_kw
    ):
        """
        Perform a request on a given urllib connection object taken from our
        pool.
    
        :param conn:
            a connection from one of our connection pools
    
        :param timeout:
            Socket timeout in seconds for the request. This can be a
            float or integer, which will set the same timeout value for
            the socket connect and the socket read, or an instance of
            :class:`urllib3.util.Timeout`, which gives you more fine-grained
            control over your timeouts.
        """
        self.num_requests += 1
    
        timeout_obj = self._get_timeout(timeout)
        timeout_obj.start_connect()
        conn.timeout = timeout_obj.connect_timeout
    
        # Trigger any extra validation we need to do.
        try:
>           self._validate_conn(conn)

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py:382: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754ad03130>
conn = <urllib3.connection.HTTPSConnection object at 0x7f754acccbe0>

    def _validate_conn(self, conn):
        """
        Called right before a request is made, after the socket is created.
        """
        super(HTTPSConnectionPool, self)._validate_conn(conn)
    
        # Force connect early to allow us to validate the connection.
        if not getattr(conn, "sock", None):  # AppEngine might not have  `.sock`
>           conn.connect()

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py:1010: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connection.HTTPSConnection object at 0x7f754acccbe0>

    def connect(self):
        # Add certificate verification
>       conn = self._new_conn()

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connection.py:353: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connection.HTTPSConnection object at 0x7f754acccbe0>

    def _new_conn(self):
        """Establish a socket connection and set nodelay settings on it.
    
        :return: New socket connection.
        """
        extra_kw = {}
        if self.source_address:
            extra_kw["source_address"] = self.source_address
    
        if self.socket_options:
            extra_kw["socket_options"] = self.socket_options
    
        try:
            conn = connection.create_connection(
                (self._dns_host, self.port), self.timeout, **extra_kw
            )
    
        except SocketTimeout:
            raise ConnectTimeoutError(
                self,
                "Connection to %s timed out. (connect timeout=%s)"
                % (self.host, self.timeout),
            )
    
        except SocketError as e:
>           raise NewConnectionError(
                self, "Failed to establish a new connection: %s" % e
            )
E           urllib3.exceptions.NewConnectionError: <urllib3.connection.HTTPSConnection object at 0x7f754acccbe0>: Failed to establish a new connection: [Errno 110] Connection timed out

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connection.py:181: NewConnectionError

During handling of the above exception, another exception occurred:

self = <requests.adapters.HTTPAdapter object at 0x7f754ad03460>
request = <PreparedRequest [POST]>, stream = False
timeout = Timeout(connect=None, read=None, total=None), verify = True
cert = None, proxies = OrderedDict()

    def send(self, request, stream=False, timeout=None, verify=True, cert=None, proxies=None):
        """Sends PreparedRequest object. Returns Response object.
    
        :param request: The :class:`PreparedRequest <PreparedRequest>` being sent.
        :param stream: (optional) Whether to stream the request content.
        :param timeout: (optional) How long to wait for the server to send
            data before giving up, as a float, or a :ref:`(connect timeout,
            read timeout) <timeouts>` tuple.
        :type timeout: float or tuple or urllib3 Timeout object
        :param verify: (optional) Either a boolean, in which case it controls whether
            we verify the server's TLS certificate, or a string, in which case it
            must be a path to a CA bundle to use
        :param cert: (optional) Any user-provided SSL certificate to be trusted.
        :param proxies: (optional) The proxies dictionary to apply to the request.
        :rtype: requests.Response
        """
    
        try:
            conn = self.get_connection(request.url, proxies)
        except LocationValueError as e:
            raise InvalidURL(e, request=request)
    
        self.cert_verify(conn, request.url, verify, cert)
        url = self.request_url(request, proxies)
        self.add_headers(request, stream=stream, timeout=timeout, verify=verify, cert=cert, proxies=proxies)
    
        chunked = not (request.body is None or 'Content-Length' in request.headers)
    
        if isinstance(timeout, tuple):
            try:
                connect, read = timeout
                timeout = TimeoutSauce(connect=connect, read=read)
            except ValueError as e:
                # this may raise a string formatting error.
                err = ("Invalid timeout {}. Pass a (connect, read) "
                       "timeout tuple, or a single float to set "
                       "both timeouts to the same value".format(timeout))
                raise ValueError(err)
        elif isinstance(timeout, TimeoutSauce):
            pass
        else:
            timeout = TimeoutSauce(connect=timeout, read=timeout)
    
        try:
            if not chunked:
>               resp = conn.urlopen(
                    method=request.method,
                    url=url,
                    body=request.body,
                    headers=request.headers,
                    redirect=False,
                    assert_same_host=False,
                    preload_content=False,
                    decode_content=False,
                    retries=self.max_retries,
                    timeout=timeout
                )

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/adapters.py:439: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754ad03130>
method = 'POST'
url = '/api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf'
body = b'{"size": 10, "from": 0, "query": {"query_string": {"fields": ["item.name"], "query": "(Spatial) AND (distribution) A...nts) AND (associated) AND (with) AND (the) AND (myenteric) AND (plexus) AND (of) AND (the) AND (rat) AND (stomach)"}}}'
headers = {'User-Agent': 'python-requests/2.25.1', 'Accept-Encoding': 'gzip, deflate', 'Accept': '*/*', 'Connection': 'keep-alive', 'Content-Length': '317', 'Content-Type': 'application/json'}
retries = Retry(total=0, connect=None, read=False, redirect=None, status=None)
redirect = False, assert_same_host = False
timeout = Timeout(connect=None, read=None, total=None), pool_timeout = None
release_conn = False, chunked = False, body_pos = None
response_kw = {'decode_content': False, 'preload_content': False}
parsed_url = Url(scheme=None, auth=None, host=None, port=None, path='/api/1/elastic/SPARC_PortalDatasets_dev/_search', query='api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf', fragment=None)
destination_scheme = None, conn = None, release_this_conn = True
http_tunnel_required = False, err = None, clean_exit = False

    def urlopen(
        self,
        method,
        url,
        body=None,
        headers=None,
        retries=None,
        redirect=True,
        assert_same_host=True,
        timeout=_Default,
        pool_timeout=None,
        release_conn=None,
        chunked=False,
        body_pos=None,
        **response_kw
    ):
        """
        Get a connection from the pool and perform an HTTP request. This is the
        lowest level call for making a request, so you'll need to specify all
        the raw details.
    
        .. note::
    
           More commonly, it's appropriate to use a convenience method provided
           by :class:`.RequestMethods`, such as :meth:`request`.
    
        .. note::
    
           `release_conn` will only behave as expected if
           `preload_content=False` because we want to make
           `preload_content=False` the default behaviour someday soon without
           breaking backwards compatibility.
    
        :param method:
            HTTP request method (such as GET, POST, PUT, etc.)
    
        :param url:
            The URL to perform the request on.
    
        :param body:
            Data to send in the request body, either :class:`str`, :class:`bytes`,
            an iterable of :class:`str`/:class:`bytes`, or a file-like object.
    
        :param headers:
            Dictionary of custom headers to send, such as User-Agent,
            If-None-Match, etc. If None, pool headers are used. If provided,
            these headers completely replace any pool-specific headers.
    
        :param retries:
            Configure the number of retries to allow before raising a
            :class:`~urllib3.exceptions.MaxRetryError` exception.
    
            Pass ``None`` to retry until you receive a response. Pass a
            :class:`~urllib3.util.retry.Retry` object for fine-grained control
            over different types of retries.
            Pass an integer number to retry connection errors that many times,
            but no other types of errors. Pass zero to never retry.
    
            If ``False``, then retries are disabled and any exception is raised
            immediately. Also, instead of raising a MaxRetryError on redirects,
            the redirect response will be returned.
    
        :type retries: :class:`~urllib3.util.retry.Retry`, False, or an int.
    
        :param redirect:
            If True, automatically handle redirects (status codes 301, 302,
            303, 307, 308). Each redirect counts as a retry. Disabling retries
            will disable redirect, too.
    
        :param assert_same_host:
            If ``True``, will make sure that the host of the pool requests is
            consistent else will raise HostChangedError. When ``False``, you can
            use the pool on an HTTP proxy and request foreign hosts.
    
        :param timeout:
            If specified, overrides the default timeout for this one
            request. It may be a float (in seconds) or an instance of
            :class:`urllib3.util.Timeout`.
    
        :param pool_timeout:
            If set and the pool is set to block=True, then this method will
            block for ``pool_timeout`` seconds and raise EmptyPoolError if no
            connection is available within the time period.
    
        :param release_conn:
            If False, then the urlopen call will not release the connection
            back into the pool once a response is received (but will release if
            you read the entire contents of the response such as when
            `preload_content=True`). This is useful if you're not preloading
            the response's content immediately. You will need to call
            ``r.release_conn()`` on the response ``r`` to return the connection
            back into the pool. If None, it takes the value of
            ``response_kw.get('preload_content', True)``.
    
        :param chunked:
            If True, urllib3 will send the body using chunked transfer
            encoding. Otherwise, urllib3 will send the body using the standard
            content-length form. Defaults to False.
    
        :param int body_pos:
            Position to seek to in file-like body in the event of a retry or
            redirect. Typically this won't need to be set because urllib3 will
            auto-populate the value when needed.
    
        :param \\**response_kw:
            Additional parameters are passed to
            :meth:`urllib3.response.HTTPResponse.from_httplib`
        """
    
        parsed_url = parse_url(url)
        destination_scheme = parsed_url.scheme
    
        if headers is None:
            headers = self.headers
    
        if not isinstance(retries, Retry):
            retries = Retry.from_int(retries, redirect=redirect, default=self.retries)
    
        if release_conn is None:
            release_conn = response_kw.get("preload_content", True)
    
        # Check host
        if assert_same_host and not self.is_same_host(url):
            raise HostChangedError(self, url, retries)
    
        # Ensure that the URL we're connecting to is properly encoded
        if url.startswith("/"):
            url = six.ensure_str(_encode_target(url))
        else:
            url = six.ensure_str(parsed_url.url)
    
        conn = None
    
        # Track whether `conn` needs to be released before
        # returning/raising/recursing. Update this variable if necessary, and
        # leave `release_conn` constant throughout the function. That way, if
        # the function recurses, the original value of `release_conn` will be
        # passed down into the recursive call, and its value will be respected.
        #
        # See issue #651 [1] for details.
        #
        # [1] <https://github.com/urllib3/urllib3/issues/651>
        release_this_conn = release_conn
    
        http_tunnel_required = connection_requires_http_tunnel(
            self.proxy, self.proxy_config, destination_scheme
        )
    
        # Merge the proxy headers. Only done when not using HTTP CONNECT. We
        # have to copy the headers dict so we can safely change it without those
        # changes being reflected in anyone else's copy.
        if not http_tunnel_required:
            headers = headers.copy()
            headers.update(self.proxy_headers)
    
        # Must keep the exception bound to a separate variable or else Python 3
        # complains about UnboundLocalError.
        err = None
    
        # Keep track of whether we cleanly exited the except block. This
        # ensures we do proper cleanup in finally.
        clean_exit = False
    
        # Rewind body position, if needed. Record current position
        # for future rewinds in the event of a redirect/retry.
        body_pos = set_file_position(body, body_pos)
    
        try:
            # Request a connection from the queue.
            timeout_obj = self._get_timeout(timeout)
            conn = self._get_conn(timeout=pool_timeout)
    
            conn.timeout = timeout_obj.connect_timeout
    
            is_new_proxy_conn = self.proxy is not None and not getattr(
                conn, "sock", None
            )
            if is_new_proxy_conn and http_tunnel_required:
                self._prepare_proxy(conn)
    
            # Make the request on the httplib connection object.
            httplib_response = self._make_request(
                conn,
                method,
                url,
                timeout=timeout_obj,
                body=body,
                headers=headers,
                chunked=chunked,
            )
    
            # If we're going to release the connection in ``finally:``, then
            # the response doesn't need to know about the connection. Otherwise
            # it will also try to release it and we'll have a double-release
            # mess.
            response_conn = conn if not release_conn else None
    
            # Pass method to Response for length checking
            response_kw["request_method"] = method
    
            # Import httplib's response into our own wrapper object
            response = self.ResponseCls.from_httplib(
                httplib_response,
                pool=self,
                connection=response_conn,
                retries=retries,
                **response_kw
            )
    
            # Everything went great!
            clean_exit = True
    
        except EmptyPoolError:
            # Didn't get a connection from the pool, no need to clean up
            clean_exit = True
            release_this_conn = False
            raise
    
        except (
            TimeoutError,
            HTTPException,
            SocketError,
            ProtocolError,
            BaseSSLError,
            SSLError,
            CertificateError,
        ) as e:
            # Discard the connection for these exceptions. It will be
            # replaced during the next _get_conn() call.
            clean_exit = False
            if isinstance(e, (BaseSSLError, CertificateError)):
                e = SSLError(e)
            elif isinstance(e, (SocketError, NewConnectionError)) and self.proxy:
                e = ProxyError("Cannot connect to proxy.", e)
            elif isinstance(e, (SocketError, HTTPException)):
                e = ProtocolError("Connection aborted.", e)
    
>           retries = retries.increment(
                method, url, error=e, _pool=self, _stacktrace=sys.exc_info()[2]
            )

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py:755: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = Retry(total=0, connect=None, read=False, redirect=None, status=None)
method = 'POST'
url = '/api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf'
response = None
error = NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7f754acccbe0>: Failed to establish a new connection: [Errno 110] Connection timed out')
_pool = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754ad03130>
_stacktrace = <traceback object at 0x7f754a8e54c0>

    def increment(
        self,
        method=None,
        url=None,
        response=None,
        error=None,
        _pool=None,
        _stacktrace=None,
    ):
        """Return a new Retry object with incremented retry counters.
    
        :param response: A response object, or None, if the server did not
            return a response.
        :type response: :class:`~urllib3.response.HTTPResponse`
        :param Exception error: An error encountered during the request, or
            None if the response was received successfully.
    
        :return: A new ``Retry`` object.
        """
        if self.total is False and error:
            # Disabled, indicate to re-raise the error.
            raise six.reraise(type(error), error, _stacktrace)
    
        total = self.total
        if total is not None:
            total -= 1
    
        connect = self.connect
        read = self.read
        redirect = self.redirect
        status_count = self.status
        other = self.other
        cause = "unknown"
        status = None
        redirect_location = None
    
        if error and self._is_connection_error(error):
            # Connect retry?
            if connect is False:
                raise six.reraise(type(error), error, _stacktrace)
            elif connect is not None:
                connect -= 1
    
        elif error and self._is_read_error(error):
            # Read retry?
            if read is False or not self._is_method_retryable(method):
                raise six.reraise(type(error), error, _stacktrace)
            elif read is not None:
                read -= 1
    
        elif error:
            # Other retry?
            if other is not None:
                other -= 1
    
        elif response and response.get_redirect_location():
            # Redirect retry?
            if redirect is not None:
                redirect -= 1
            cause = "too many redirects"
            redirect_location = response.get_redirect_location()
            status = response.status
    
        else:
            # Incrementing because of a server error like a 500 in
            # status_forcelist and the given method is in the allowed_methods
            cause = ResponseError.GENERIC_ERROR
            if response and response.status:
                if status_count is not None:
                    status_count -= 1
                cause = ResponseError.SPECIFIC_ERROR.format(status_code=response.status)
                status = response.status
    
        history = self.history + (
            RequestHistory(method, url, error, status, redirect_location),
        )
    
        new_retry = self.new(
            total=total,
            connect=connect,
            read=read,
            redirect=redirect,
            status=status_count,
            other=other,
            history=history,
        )
    
        if new_retry.is_exhausted():
>           raise MaxRetryError(_pool, url, error or ResponseError(cause))
E           urllib3.exceptions.MaxRetryError: HTTPSConnectionPool(host='scicrunch.org', port=443): Max retries exceeded with url: /api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7f754acccbe0>: Failed to establish a new connection: [Errno 110] Connection timed out'))

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/util/retry.py:574: MaxRetryError

During handling of the above exception, another exception occurred:

client = <FlaskClient <Flask 'app.main'>>

    def test_complex_title_dataset_search(client):
        title = "Spatial distribution and morphometric characterization of vagal efferents associated with the myenteric plexus of the rat stomach"
    
        start = timer()
>       r = client.get('/dataset_info/using_title', query_string={'title': title})

tests/test_dataset_info.py:151: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/werkzeug/test.py:1029: in get
    return self.open(*args, **kw)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/testing.py:222: in open
    return Client.open(
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/werkzeug/test.py:993: in open
    response = self.run_wsgi_app(environ.copy(), buffered=buffered)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/werkzeug/test.py:884: in run_wsgi_app
    rv = run_wsgi_app(self.application, environ, buffered=buffered)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/werkzeug/test.py:1119: in run_wsgi_app
    app_rv = app(environ, start_response)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:2463: in __call__
    return self.wsgi_app(environ, start_response)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:2449: in wsgi_app
    response = self.handle_exception(e)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask_cors/extension.py:161: in wrapped_function
    return cors_after_request(app.make_response(f(*args, **kwargs)))
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1866: in handle_exception
    reraise(exc_type, exc_value, tb)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/_compat.py:39: in reraise
    raise value
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:2446: in wsgi_app
    response = self.full_dispatch_request()
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1951: in full_dispatch_request
    rv = self.handle_user_exception(e)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask_cors/extension.py:161: in wrapped_function
    return cors_after_request(app.make_response(f(*args, **kwargs)))
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1820: in handle_user_exception
    reraise(exc_type, exc_value, tb)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/_compat.py:39: in reraise
    raise value
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1949: in full_dispatch_request
    rv = self.dispatch_request()
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1935: in dispatch_request
    return self.view_functions[rule.endpoint](**req.view_args)
app/main.py:575: in get_dataset_info_title
    return reform_dataset_results(dataset_search(query))
app/main.py:663: in dataset_search
    response = requests.post(f'{Config.SCI_CRUNCH_HOST}/_search',
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/api.py:119: in post
    return request('post', url, data=data, json=json, **kwargs)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/api.py:61: in request
    return session.request(method=method, url=url, **kwargs)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/sessions.py:542: in request
    resp = self.send(prep, **send_kwargs)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/sessions.py:655: in send
    r = adapter.send(request, **kwargs)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <requests.adapters.HTTPAdapter object at 0x7f754ad03460>
request = <PreparedRequest [POST]>, stream = False
timeout = Timeout(connect=None, read=None, total=None), verify = True
cert = None, proxies = OrderedDict()

    def send(self, request, stream=False, timeout=None, verify=True, cert=None, proxies=None):
        """Sends PreparedRequest object. Returns Response object.
    
        :param request: The :class:`PreparedRequest <PreparedRequest>` being sent.
        :param stream: (optional) Whether to stream the request content.
        :param timeout: (optional) How long to wait for the server to send
            data before giving up, as a float, or a :ref:`(connect timeout,
            read timeout) <timeouts>` tuple.
        :type timeout: float or tuple or urllib3 Timeout object
        :param verify: (optional) Either a boolean, in which case it controls whether
            we verify the server's TLS certificate, or a string, in which case it
            must be a path to a CA bundle to use
        :param cert: (optional) Any user-provided SSL certificate to be trusted.
        :param proxies: (optional) The proxies dictionary to apply to the request.
        :rtype: requests.Response
        """
    
        try:
            conn = self.get_connection(request.url, proxies)
        except LocationValueError as e:
            raise InvalidURL(e, request=request)
    
        self.cert_verify(conn, request.url, verify, cert)
        url = self.request_url(request, proxies)
        self.add_headers(request, stream=stream, timeout=timeout, verify=verify, cert=cert, proxies=proxies)
    
        chunked = not (request.body is None or 'Content-Length' in request.headers)
    
        if isinstance(timeout, tuple):
            try:
                connect, read = timeout
                timeout = TimeoutSauce(connect=connect, read=read)
            except ValueError as e:
                # this may raise a string formatting error.
                err = ("Invalid timeout {}. Pass a (connect, read) "
                       "timeout tuple, or a single float to set "
                       "both timeouts to the same value".format(timeout))
                raise ValueError(err)
        elif isinstance(timeout, TimeoutSauce):
            pass
        else:
            timeout = TimeoutSauce(connect=timeout, read=timeout)
    
        try:
            if not chunked:
                resp = conn.urlopen(
                    method=request.method,
                    url=url,
                    body=request.body,
                    headers=request.headers,
                    redirect=False,
                    assert_same_host=False,
                    preload_content=False,
                    decode_content=False,
                    retries=self.max_retries,
                    timeout=timeout
                )
    
            # Send the request.
            else:
                if hasattr(conn, 'proxy_pool'):
                    conn = conn.proxy_pool
    
                low_conn = conn._get_conn(timeout=DEFAULT_POOL_TIMEOUT)
    
                try:
                    low_conn.putrequest(request.method,
                                        url,
                                        skip_accept_encoding=True)
    
                    for header, value in request.headers.items():
                        low_conn.putheader(header, value)
    
                    low_conn.endheaders()
    
                    for i in request.body:
                        low_conn.send(hex(len(i))[2:].encode('utf-8'))
                        low_conn.send(b'\r\n')
                        low_conn.send(i)
                        low_conn.send(b'\r\n')
                    low_conn.send(b'0\r\n\r\n')
    
                    # Receive the response from the server
                    try:
                        # For Python 2.7, use buffering of HTTP responses
                        r = low_conn.getresponse(buffering=True)
                    except TypeError:
                        # For compatibility with Python 3.3+
                        r = low_conn.getresponse()
    
                    resp = HTTPResponse.from_httplib(
                        r,
                        pool=conn,
                        connection=low_conn,
                        preload_content=False,
                        decode_content=False
                    )
                except:
                    # If we hit any problems here, clean up the connection.
                    # Then, reraise so that we can handle the actual exception.
                    low_conn.close()
                    raise
    
        except (ProtocolError, socket.error) as err:
            raise ConnectionError(err, request=request)
    
        except MaxRetryError as e:
            if isinstance(e.reason, ConnectTimeoutError):
                # TODO: Remove this in 3.0.0: see #2811
                if not isinstance(e.reason, NewConnectionError):
                    raise ConnectTimeout(e, request=request)
    
            if isinstance(e.reason, ResponseError):
                raise RetryError(e, request=request)
    
            if isinstance(e.reason, _ProxyError):
                raise ProxyError(e, request=request)
    
            if isinstance(e.reason, _SSLError):
                # This branch is for urllib3 v1.22 and later.
                raise SSLError(e, request=request)
    
>           raise ConnectionError(e, request=request)
E           requests.exceptions.ConnectionError: HTTPSConnectionPool(host='scicrunch.org', port=443): Max retries exceeded with url: /api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7f754acccbe0>: Failed to establish a new connection: [Errno 110] Connection timed out'))

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/adapters.py:516: ConnectionError
__________________ test_title_plot_annotation_dataset_search ___________________

self = <urllib3.connection.HTTPSConnection object at 0x7f754b6ace50>

    def _new_conn(self):
        """Establish a socket connection and set nodelay settings on it.
    
        :return: New socket connection.
        """
        extra_kw = {}
        if self.source_address:
            extra_kw["source_address"] = self.source_address
    
        if self.socket_options:
            extra_kw["socket_options"] = self.socket_options
    
        try:
>           conn = connection.create_connection(
                (self._dns_host, self.port), self.timeout, **extra_kw
            )

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connection.py:169: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

address = ('scicrunch.org', 443), timeout = None, source_address = None
socket_options = [(6, 1, 1)]

    def create_connection(
        address,
        timeout=socket._GLOBAL_DEFAULT_TIMEOUT,
        source_address=None,
        socket_options=None,
    ):
        """Connect to *address* and return the socket object.
    
        Convenience function.  Connect to *address* (a 2-tuple ``(host,
        port)``) and return the socket object.  Passing the optional
        *timeout* parameter will set the timeout on the socket instance
        before attempting to connect.  If no *timeout* is supplied, the
        global default timeout setting returned by :func:`socket.getdefaulttimeout`
        is used.  If *source_address* is set it must be a tuple of (host, port)
        for the socket to bind as a source address before making the connection.
        An host of '' or port 0 tells the OS to use the default.
        """
    
        host, port = address
        if host.startswith("["):
            host = host.strip("[]")
        err = None
    
        # Using the value from allowed_gai_family() in the context of getaddrinfo lets
        # us select whether to work with IPv4 DNS records, IPv6 records, or both.
        # The original create_connection function always returns all records.
        family = allowed_gai_family()
    
        try:
            host.encode("idna")
        except UnicodeError:
            return six.raise_from(
                LocationParseError(u"'%s', label empty or too long" % host), None
            )
    
        for res in socket.getaddrinfo(host, port, family, socket.SOCK_STREAM):
            af, socktype, proto, canonname, sa = res
            sock = None
            try:
                sock = socket.socket(af, socktype, proto)
    
                # If provided, set socket level options before connecting.
                _set_socket_options(sock, socket_options)
    
                if timeout is not socket._GLOBAL_DEFAULT_TIMEOUT:
                    sock.settimeout(timeout)
                if source_address:
                    sock.bind(source_address)
                sock.connect(sa)
                return sock
    
            except socket.error as e:
                err = e
                if sock is not None:
                    sock.close()
                    sock = None
    
        if err is not None:
>           raise err

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/util/connection.py:96: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

address = ('scicrunch.org', 443), timeout = None, source_address = None
socket_options = [(6, 1, 1)]

    def create_connection(
        address,
        timeout=socket._GLOBAL_DEFAULT_TIMEOUT,
        source_address=None,
        socket_options=None,
    ):
        """Connect to *address* and return the socket object.
    
        Convenience function.  Connect to *address* (a 2-tuple ``(host,
        port)``) and return the socket object.  Passing the optional
        *timeout* parameter will set the timeout on the socket instance
        before attempting to connect.  If no *timeout* is supplied, the
        global default timeout setting returned by :func:`socket.getdefaulttimeout`
        is used.  If *source_address* is set it must be a tuple of (host, port)
        for the socket to bind as a source address before making the connection.
        An host of '' or port 0 tells the OS to use the default.
        """
    
        host, port = address
        if host.startswith("["):
            host = host.strip("[]")
        err = None
    
        # Using the value from allowed_gai_family() in the context of getaddrinfo lets
        # us select whether to work with IPv4 DNS records, IPv6 records, or both.
        # The original create_connection function always returns all records.
        family = allowed_gai_family()
    
        try:
            host.encode("idna")
        except UnicodeError:
            return six.raise_from(
                LocationParseError(u"'%s', label empty or too long" % host), None
            )
    
        for res in socket.getaddrinfo(host, port, family, socket.SOCK_STREAM):
            af, socktype, proto, canonname, sa = res
            sock = None
            try:
                sock = socket.socket(af, socktype, proto)
    
                # If provided, set socket level options before connecting.
                _set_socket_options(sock, socket_options)
    
                if timeout is not socket._GLOBAL_DEFAULT_TIMEOUT:
                    sock.settimeout(timeout)
                if source_address:
                    sock.bind(source_address)
>               sock.connect(sa)
E               TimeoutError: [Errno 110] Connection timed out

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/util/connection.py:86: TimeoutError

During handling of the above exception, another exception occurred:

self = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754b6aca60>
method = 'POST'
url = '/api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf'
body = b'{"size": 10, "from": 0, "query": {"query_string": {"fields": ["item.name"], "query": "(Sympathetic) AND (nerve) AND (stimulation) AND (of) AND (mouse) AND (and) AND (rabbit) AND (hearts)"}}}'
headers = {'User-Agent': 'python-requests/2.25.1', 'Accept-Encoding': 'gzip, deflate', 'Accept': '*/*', 'Connection': 'keep-alive', 'Content-Length': '190', 'Content-Type': 'application/json'}
retries = Retry(total=0, connect=None, read=False, redirect=None, status=None)
redirect = False, assert_same_host = False
timeout = Timeout(connect=None, read=None, total=None), pool_timeout = None
release_conn = False, chunked = False, body_pos = None
response_kw = {'decode_content': False, 'preload_content': False}
parsed_url = Url(scheme=None, auth=None, host=None, port=None, path='/api/1/elastic/SPARC_PortalDatasets_dev/_search', query='api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf', fragment=None)
destination_scheme = None, conn = None, release_this_conn = True
http_tunnel_required = False, err = None, clean_exit = False

    def urlopen(
        self,
        method,
        url,
        body=None,
        headers=None,
        retries=None,
        redirect=True,
        assert_same_host=True,
        timeout=_Default,
        pool_timeout=None,
        release_conn=None,
        chunked=False,
        body_pos=None,
        **response_kw
    ):
        """
        Get a connection from the pool and perform an HTTP request. This is the
        lowest level call for making a request, so you'll need to specify all
        the raw details.
    
        .. note::
    
           More commonly, it's appropriate to use a convenience method provided
           by :class:`.RequestMethods`, such as :meth:`request`.
    
        .. note::
    
           `release_conn` will only behave as expected if
           `preload_content=False` because we want to make
           `preload_content=False` the default behaviour someday soon without
           breaking backwards compatibility.
    
        :param method:
            HTTP request method (such as GET, POST, PUT, etc.)
    
        :param url:
            The URL to perform the request on.
    
        :param body:
            Data to send in the request body, either :class:`str`, :class:`bytes`,
            an iterable of :class:`str`/:class:`bytes`, or a file-like object.
    
        :param headers:
            Dictionary of custom headers to send, such as User-Agent,
            If-None-Match, etc. If None, pool headers are used. If provided,
            these headers completely replace any pool-specific headers.
    
        :param retries:
            Configure the number of retries to allow before raising a
            :class:`~urllib3.exceptions.MaxRetryError` exception.
    
            Pass ``None`` to retry until you receive a response. Pass a
            :class:`~urllib3.util.retry.Retry` object for fine-grained control
            over different types of retries.
            Pass an integer number to retry connection errors that many times,
            but no other types of errors. Pass zero to never retry.
    
            If ``False``, then retries are disabled and any exception is raised
            immediately. Also, instead of raising a MaxRetryError on redirects,
            the redirect response will be returned.
    
        :type retries: :class:`~urllib3.util.retry.Retry`, False, or an int.
    
        :param redirect:
            If True, automatically handle redirects (status codes 301, 302,
            303, 307, 308). Each redirect counts as a retry. Disabling retries
            will disable redirect, too.
    
        :param assert_same_host:
            If ``True``, will make sure that the host of the pool requests is
            consistent else will raise HostChangedError. When ``False``, you can
            use the pool on an HTTP proxy and request foreign hosts.
    
        :param timeout:
            If specified, overrides the default timeout for this one
            request. It may be a float (in seconds) or an instance of
            :class:`urllib3.util.Timeout`.
    
        :param pool_timeout:
            If set and the pool is set to block=True, then this method will
            block for ``pool_timeout`` seconds and raise EmptyPoolError if no
            connection is available within the time period.
    
        :param release_conn:
            If False, then the urlopen call will not release the connection
            back into the pool once a response is received (but will release if
            you read the entire contents of the response such as when
            `preload_content=True`). This is useful if you're not preloading
            the response's content immediately. You will need to call
            ``r.release_conn()`` on the response ``r`` to return the connection
            back into the pool. If None, it takes the value of
            ``response_kw.get('preload_content', True)``.
    
        :param chunked:
            If True, urllib3 will send the body using chunked transfer
            encoding. Otherwise, urllib3 will send the body using the standard
            content-length form. Defaults to False.
    
        :param int body_pos:
            Position to seek to in file-like body in the event of a retry or
            redirect. Typically this won't need to be set because urllib3 will
            auto-populate the value when needed.
    
        :param \\**response_kw:
            Additional parameters are passed to
            :meth:`urllib3.response.HTTPResponse.from_httplib`
        """
    
        parsed_url = parse_url(url)
        destination_scheme = parsed_url.scheme
    
        if headers is None:
            headers = self.headers
    
        if not isinstance(retries, Retry):
            retries = Retry.from_int(retries, redirect=redirect, default=self.retries)
    
        if release_conn is None:
            release_conn = response_kw.get("preload_content", True)
    
        # Check host
        if assert_same_host and not self.is_same_host(url):
            raise HostChangedError(self, url, retries)
    
        # Ensure that the URL we're connecting to is properly encoded
        if url.startswith("/"):
            url = six.ensure_str(_encode_target(url))
        else:
            url = six.ensure_str(parsed_url.url)
    
        conn = None
    
        # Track whether `conn` needs to be released before
        # returning/raising/recursing. Update this variable if necessary, and
        # leave `release_conn` constant throughout the function. That way, if
        # the function recurses, the original value of `release_conn` will be
        # passed down into the recursive call, and its value will be respected.
        #
        # See issue #651 [1] for details.
        #
        # [1] <https://github.com/urllib3/urllib3/issues/651>
        release_this_conn = release_conn
    
        http_tunnel_required = connection_requires_http_tunnel(
            self.proxy, self.proxy_config, destination_scheme
        )
    
        # Merge the proxy headers. Only done when not using HTTP CONNECT. We
        # have to copy the headers dict so we can safely change it without those
        # changes being reflected in anyone else's copy.
        if not http_tunnel_required:
            headers = headers.copy()
            headers.update(self.proxy_headers)
    
        # Must keep the exception bound to a separate variable or else Python 3
        # complains about UnboundLocalError.
        err = None
    
        # Keep track of whether we cleanly exited the except block. This
        # ensures we do proper cleanup in finally.
        clean_exit = False
    
        # Rewind body position, if needed. Record current position
        # for future rewinds in the event of a redirect/retry.
        body_pos = set_file_position(body, body_pos)
    
        try:
            # Request a connection from the queue.
            timeout_obj = self._get_timeout(timeout)
            conn = self._get_conn(timeout=pool_timeout)
    
            conn.timeout = timeout_obj.connect_timeout
    
            is_new_proxy_conn = self.proxy is not None and not getattr(
                conn, "sock", None
            )
            if is_new_proxy_conn and http_tunnel_required:
                self._prepare_proxy(conn)
    
            # Make the request on the httplib connection object.
>           httplib_response = self._make_request(
                conn,
                method,
                url,
                timeout=timeout_obj,
                body=body,
                headers=headers,
                chunked=chunked,
            )

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py:699: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754b6aca60>
conn = <urllib3.connection.HTTPSConnection object at 0x7f754b6ace50>
method = 'POST'
url = '/api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf'
timeout = Timeout(connect=None, read=None, total=None), chunked = False
httplib_request_kw = {'body': b'{"size": 10, "from": 0, "query": {"query_string": {"fields": ["item.name"], "query": "(Sympathetic) AND (ne...p, deflate', 'Accept': '*/*', 'Connection': 'keep-alive', 'Content-Length': '190', 'Content-Type': 'application/json'}}
timeout_obj = Timeout(connect=None, read=None, total=None)

    def _make_request(
        self, conn, method, url, timeout=_Default, chunked=False, **httplib_request_kw
    ):
        """
        Perform a request on a given urllib connection object taken from our
        pool.
    
        :param conn:
            a connection from one of our connection pools
    
        :param timeout:
            Socket timeout in seconds for the request. This can be a
            float or integer, which will set the same timeout value for
            the socket connect and the socket read, or an instance of
            :class:`urllib3.util.Timeout`, which gives you more fine-grained
            control over your timeouts.
        """
        self.num_requests += 1
    
        timeout_obj = self._get_timeout(timeout)
        timeout_obj.start_connect()
        conn.timeout = timeout_obj.connect_timeout
    
        # Trigger any extra validation we need to do.
        try:
>           self._validate_conn(conn)

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py:382: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754b6aca60>
conn = <urllib3.connection.HTTPSConnection object at 0x7f754b6ace50>

    def _validate_conn(self, conn):
        """
        Called right before a request is made, after the socket is created.
        """
        super(HTTPSConnectionPool, self)._validate_conn(conn)
    
        # Force connect early to allow us to validate the connection.
        if not getattr(conn, "sock", None):  # AppEngine might not have  `.sock`
>           conn.connect()

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py:1010: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connection.HTTPSConnection object at 0x7f754b6ace50>

    def connect(self):
        # Add certificate verification
>       conn = self._new_conn()

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connection.py:353: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connection.HTTPSConnection object at 0x7f754b6ace50>

    def _new_conn(self):
        """Establish a socket connection and set nodelay settings on it.
    
        :return: New socket connection.
        """
        extra_kw = {}
        if self.source_address:
            extra_kw["source_address"] = self.source_address
    
        if self.socket_options:
            extra_kw["socket_options"] = self.socket_options
    
        try:
            conn = connection.create_connection(
                (self._dns_host, self.port), self.timeout, **extra_kw
            )
    
        except SocketTimeout:
            raise ConnectTimeoutError(
                self,
                "Connection to %s timed out. (connect timeout=%s)"
                % (self.host, self.timeout),
            )
    
        except SocketError as e:
>           raise NewConnectionError(
                self, "Failed to establish a new connection: %s" % e
            )
E           urllib3.exceptions.NewConnectionError: <urllib3.connection.HTTPSConnection object at 0x7f754b6ace50>: Failed to establish a new connection: [Errno 110] Connection timed out

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connection.py:181: NewConnectionError

During handling of the above exception, another exception occurred:

self = <requests.adapters.HTTPAdapter object at 0x7f754aabbd60>
request = <PreparedRequest [POST]>, stream = False
timeout = Timeout(connect=None, read=None, total=None), verify = True
cert = None, proxies = OrderedDict()

    def send(self, request, stream=False, timeout=None, verify=True, cert=None, proxies=None):
        """Sends PreparedRequest object. Returns Response object.
    
        :param request: The :class:`PreparedRequest <PreparedRequest>` being sent.
        :param stream: (optional) Whether to stream the request content.
        :param timeout: (optional) How long to wait for the server to send
            data before giving up, as a float, or a :ref:`(connect timeout,
            read timeout) <timeouts>` tuple.
        :type timeout: float or tuple or urllib3 Timeout object
        :param verify: (optional) Either a boolean, in which case it controls whether
            we verify the server's TLS certificate, or a string, in which case it
            must be a path to a CA bundle to use
        :param cert: (optional) Any user-provided SSL certificate to be trusted.
        :param proxies: (optional) The proxies dictionary to apply to the request.
        :rtype: requests.Response
        """
    
        try:
            conn = self.get_connection(request.url, proxies)
        except LocationValueError as e:
            raise InvalidURL(e, request=request)
    
        self.cert_verify(conn, request.url, verify, cert)
        url = self.request_url(request, proxies)
        self.add_headers(request, stream=stream, timeout=timeout, verify=verify, cert=cert, proxies=proxies)
    
        chunked = not (request.body is None or 'Content-Length' in request.headers)
    
        if isinstance(timeout, tuple):
            try:
                connect, read = timeout
                timeout = TimeoutSauce(connect=connect, read=read)
            except ValueError as e:
                # this may raise a string formatting error.
                err = ("Invalid timeout {}. Pass a (connect, read) "
                       "timeout tuple, or a single float to set "
                       "both timeouts to the same value".format(timeout))
                raise ValueError(err)
        elif isinstance(timeout, TimeoutSauce):
            pass
        else:
            timeout = TimeoutSauce(connect=timeout, read=timeout)
    
        try:
            if not chunked:
>               resp = conn.urlopen(
                    method=request.method,
                    url=url,
                    body=request.body,
                    headers=request.headers,
                    redirect=False,
                    assert_same_host=False,
                    preload_content=False,
                    decode_content=False,
                    retries=self.max_retries,
                    timeout=timeout
                )

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/adapters.py:439: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754b6aca60>
method = 'POST'
url = '/api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf'
body = b'{"size": 10, "from": 0, "query": {"query_string": {"fields": ["item.name"], "query": "(Sympathetic) AND (nerve) AND (stimulation) AND (of) AND (mouse) AND (and) AND (rabbit) AND (hearts)"}}}'
headers = {'User-Agent': 'python-requests/2.25.1', 'Accept-Encoding': 'gzip, deflate', 'Accept': '*/*', 'Connection': 'keep-alive', 'Content-Length': '190', 'Content-Type': 'application/json'}
retries = Retry(total=0, connect=None, read=False, redirect=None, status=None)
redirect = False, assert_same_host = False
timeout = Timeout(connect=None, read=None, total=None), pool_timeout = None
release_conn = False, chunked = False, body_pos = None
response_kw = {'decode_content': False, 'preload_content': False}
parsed_url = Url(scheme=None, auth=None, host=None, port=None, path='/api/1/elastic/SPARC_PortalDatasets_dev/_search', query='api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf', fragment=None)
destination_scheme = None, conn = None, release_this_conn = True
http_tunnel_required = False, err = None, clean_exit = False

    def urlopen(
        self,
        method,
        url,
        body=None,
        headers=None,
        retries=None,
        redirect=True,
        assert_same_host=True,
        timeout=_Default,
        pool_timeout=None,
        release_conn=None,
        chunked=False,
        body_pos=None,
        **response_kw
    ):
        """
        Get a connection from the pool and perform an HTTP request. This is the
        lowest level call for making a request, so you'll need to specify all
        the raw details.
    
        .. note::
    
           More commonly, it's appropriate to use a convenience method provided
           by :class:`.RequestMethods`, such as :meth:`request`.
    
        .. note::
    
           `release_conn` will only behave as expected if
           `preload_content=False` because we want to make
           `preload_content=False` the default behaviour someday soon without
           breaking backwards compatibility.
    
        :param method:
            HTTP request method (such as GET, POST, PUT, etc.)
    
        :param url:
            The URL to perform the request on.
    
        :param body:
            Data to send in the request body, either :class:`str`, :class:`bytes`,
            an iterable of :class:`str`/:class:`bytes`, or a file-like object.
    
        :param headers:
            Dictionary of custom headers to send, such as User-Agent,
            If-None-Match, etc. If None, pool headers are used. If provided,
            these headers completely replace any pool-specific headers.
    
        :param retries:
            Configure the number of retries to allow before raising a
            :class:`~urllib3.exceptions.MaxRetryError` exception.
    
            Pass ``None`` to retry until you receive a response. Pass a
            :class:`~urllib3.util.retry.Retry` object for fine-grained control
            over different types of retries.
            Pass an integer number to retry connection errors that many times,
            but no other types of errors. Pass zero to never retry.
    
            If ``False``, then retries are disabled and any exception is raised
            immediately. Also, instead of raising a MaxRetryError on redirects,
            the redirect response will be returned.
    
        :type retries: :class:`~urllib3.util.retry.Retry`, False, or an int.
    
        :param redirect:
            If True, automatically handle redirects (status codes 301, 302,
            303, 307, 308). Each redirect counts as a retry. Disabling retries
            will disable redirect, too.
    
        :param assert_same_host:
            If ``True``, will make sure that the host of the pool requests is
            consistent else will raise HostChangedError. When ``False``, you can
            use the pool on an HTTP proxy and request foreign hosts.
    
        :param timeout:
            If specified, overrides the default timeout for this one
            request. It may be a float (in seconds) or an instance of
            :class:`urllib3.util.Timeout`.
    
        :param pool_timeout:
            If set and the pool is set to block=True, then this method will
            block for ``pool_timeout`` seconds and raise EmptyPoolError if no
            connection is available within the time period.
    
        :param release_conn:
            If False, then the urlopen call will not release the connection
            back into the pool once a response is received (but will release if
            you read the entire contents of the response such as when
            `preload_content=True`). This is useful if you're not preloading
            the response's content immediately. You will need to call
            ``r.release_conn()`` on the response ``r`` to return the connection
            back into the pool. If None, it takes the value of
            ``response_kw.get('preload_content', True)``.
    
        :param chunked:
            If True, urllib3 will send the body using chunked transfer
            encoding. Otherwise, urllib3 will send the body using the standard
            content-length form. Defaults to False.
    
        :param int body_pos:
            Position to seek to in file-like body in the event of a retry or
            redirect. Typically this won't need to be set because urllib3 will
            auto-populate the value when needed.
    
        :param \\**response_kw:
            Additional parameters are passed to
            :meth:`urllib3.response.HTTPResponse.from_httplib`
        """
    
        parsed_url = parse_url(url)
        destination_scheme = parsed_url.scheme
    
        if headers is None:
            headers = self.headers
    
        if not isinstance(retries, Retry):
            retries = Retry.from_int(retries, redirect=redirect, default=self.retries)
    
        if release_conn is None:
            release_conn = response_kw.get("preload_content", True)
    
        # Check host
        if assert_same_host and not self.is_same_host(url):
            raise HostChangedError(self, url, retries)
    
        # Ensure that the URL we're connecting to is properly encoded
        if url.startswith("/"):
            url = six.ensure_str(_encode_target(url))
        else:
            url = six.ensure_str(parsed_url.url)
    
        conn = None
    
        # Track whether `conn` needs to be released before
        # returning/raising/recursing. Update this variable if necessary, and
        # leave `release_conn` constant throughout the function. That way, if
        # the function recurses, the original value of `release_conn` will be
        # passed down into the recursive call, and its value will be respected.
        #
        # See issue #651 [1] for details.
        #
        # [1] <https://github.com/urllib3/urllib3/issues/651>
        release_this_conn = release_conn
    
        http_tunnel_required = connection_requires_http_tunnel(
            self.proxy, self.proxy_config, destination_scheme
        )
    
        # Merge the proxy headers. Only done when not using HTTP CONNECT. We
        # have to copy the headers dict so we can safely change it without those
        # changes being reflected in anyone else's copy.
        if not http_tunnel_required:
            headers = headers.copy()
            headers.update(self.proxy_headers)
    
        # Must keep the exception bound to a separate variable or else Python 3
        # complains about UnboundLocalError.
        err = None
    
        # Keep track of whether we cleanly exited the except block. This
        # ensures we do proper cleanup in finally.
        clean_exit = False
    
        # Rewind body position, if needed. Record current position
        # for future rewinds in the event of a redirect/retry.
        body_pos = set_file_position(body, body_pos)
    
        try:
            # Request a connection from the queue.
            timeout_obj = self._get_timeout(timeout)
            conn = self._get_conn(timeout=pool_timeout)
    
            conn.timeout = timeout_obj.connect_timeout
    
            is_new_proxy_conn = self.proxy is not None and not getattr(
                conn, "sock", None
            )
            if is_new_proxy_conn and http_tunnel_required:
                self._prepare_proxy(conn)
    
            # Make the request on the httplib connection object.
            httplib_response = self._make_request(
                conn,
                method,
                url,
                timeout=timeout_obj,
                body=body,
                headers=headers,
                chunked=chunked,
            )
    
            # If we're going to release the connection in ``finally:``, then
            # the response doesn't need to know about the connection. Otherwise
            # it will also try to release it and we'll have a double-release
            # mess.
            response_conn = conn if not release_conn else None
    
            # Pass method to Response for length checking
            response_kw["request_method"] = method
    
            # Import httplib's response into our own wrapper object
            response = self.ResponseCls.from_httplib(
                httplib_response,
                pool=self,
                connection=response_conn,
                retries=retries,
                **response_kw
            )
    
            # Everything went great!
            clean_exit = True
    
        except EmptyPoolError:
            # Didn't get a connection from the pool, no need to clean up
            clean_exit = True
            release_this_conn = False
            raise
    
        except (
            TimeoutError,
            HTTPException,
            SocketError,
            ProtocolError,
            BaseSSLError,
            SSLError,
            CertificateError,
        ) as e:
            # Discard the connection for these exceptions. It will be
            # replaced during the next _get_conn() call.
            clean_exit = False
            if isinstance(e, (BaseSSLError, CertificateError)):
                e = SSLError(e)
            elif isinstance(e, (SocketError, NewConnectionError)) and self.proxy:
                e = ProxyError("Cannot connect to proxy.", e)
            elif isinstance(e, (SocketError, HTTPException)):
                e = ProtocolError("Connection aborted.", e)
    
>           retries = retries.increment(
                method, url, error=e, _pool=self, _stacktrace=sys.exc_info()[2]
            )

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py:755: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = Retry(total=0, connect=None, read=False, redirect=None, status=None)
method = 'POST'
url = '/api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf'
response = None
error = NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7f754b6ace50>: Failed to establish a new connection: [Errno 110] Connection timed out')
_pool = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754b6aca60>
_stacktrace = <traceback object at 0x7f754a799980>

    def increment(
        self,
        method=None,
        url=None,
        response=None,
        error=None,
        _pool=None,
        _stacktrace=None,
    ):
        """Return a new Retry object with incremented retry counters.
    
        :param response: A response object, or None, if the server did not
            return a response.
        :type response: :class:`~urllib3.response.HTTPResponse`
        :param Exception error: An error encountered during the request, or
            None if the response was received successfully.
    
        :return: A new ``Retry`` object.
        """
        if self.total is False and error:
            # Disabled, indicate to re-raise the error.
            raise six.reraise(type(error), error, _stacktrace)
    
        total = self.total
        if total is not None:
            total -= 1
    
        connect = self.connect
        read = self.read
        redirect = self.redirect
        status_count = self.status
        other = self.other
        cause = "unknown"
        status = None
        redirect_location = None
    
        if error and self._is_connection_error(error):
            # Connect retry?
            if connect is False:
                raise six.reraise(type(error), error, _stacktrace)
            elif connect is not None:
                connect -= 1
    
        elif error and self._is_read_error(error):
            # Read retry?
            if read is False or not self._is_method_retryable(method):
                raise six.reraise(type(error), error, _stacktrace)
            elif read is not None:
                read -= 1
    
        elif error:
            # Other retry?
            if other is not None:
                other -= 1
    
        elif response and response.get_redirect_location():
            # Redirect retry?
            if redirect is not None:
                redirect -= 1
            cause = "too many redirects"
            redirect_location = response.get_redirect_location()
            status = response.status
    
        else:
            # Incrementing because of a server error like a 500 in
            # status_forcelist and the given method is in the allowed_methods
            cause = ResponseError.GENERIC_ERROR
            if response and response.status:
                if status_count is not None:
                    status_count -= 1
                cause = ResponseError.SPECIFIC_ERROR.format(status_code=response.status)
                status = response.status
    
        history = self.history + (
            RequestHistory(method, url, error, status, redirect_location),
        )
    
        new_retry = self.new(
            total=total,
            connect=connect,
            read=read,
            redirect=redirect,
            status=status_count,
            other=other,
            history=history,
        )
    
        if new_retry.is_exhausted():
>           raise MaxRetryError(_pool, url, error or ResponseError(cause))
E           urllib3.exceptions.MaxRetryError: HTTPSConnectionPool(host='scicrunch.org', port=443): Max retries exceeded with url: /api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7f754b6ace50>: Failed to establish a new connection: [Errno 110] Connection timed out'))

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/util/retry.py:574: MaxRetryError

During handling of the above exception, another exception occurred:

client = <FlaskClient <Flask 'app.main'>>

    def test_title_plot_annotation_dataset_search(client):
        print()
        title = "Sympathetic nerve stimulation of mouse and rabbit hearts"
        start = timer()
>       r = client.get('/dataset_info/using_title', query_string={'title': title})

tests/test_dataset_info.py:202: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/werkzeug/test.py:1029: in get
    return self.open(*args, **kw)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/testing.py:222: in open
    return Client.open(
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/werkzeug/test.py:993: in open
    response = self.run_wsgi_app(environ.copy(), buffered=buffered)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/werkzeug/test.py:884: in run_wsgi_app
    rv = run_wsgi_app(self.application, environ, buffered=buffered)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/werkzeug/test.py:1119: in run_wsgi_app
    app_rv = app(environ, start_response)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:2463: in __call__
    return self.wsgi_app(environ, start_response)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:2449: in wsgi_app
    response = self.handle_exception(e)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask_cors/extension.py:161: in wrapped_function
    return cors_after_request(app.make_response(f(*args, **kwargs)))
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1866: in handle_exception
    reraise(exc_type, exc_value, tb)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/_compat.py:39: in reraise
    raise value
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:2446: in wsgi_app
    response = self.full_dispatch_request()
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1951: in full_dispatch_request
    rv = self.handle_user_exception(e)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask_cors/extension.py:161: in wrapped_function
    return cors_after_request(app.make_response(f(*args, **kwargs)))
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1820: in handle_user_exception
    reraise(exc_type, exc_value, tb)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/_compat.py:39: in reraise
    raise value
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1949: in full_dispatch_request
    rv = self.dispatch_request()
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1935: in dispatch_request
    return self.view_functions[rule.endpoint](**req.view_args)
app/main.py:575: in get_dataset_info_title
    return reform_dataset_results(dataset_search(query))
app/main.py:663: in dataset_search
    response = requests.post(f'{Config.SCI_CRUNCH_HOST}/_search',
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/api.py:119: in post
    return request('post', url, data=data, json=json, **kwargs)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/api.py:61: in request
    return session.request(method=method, url=url, **kwargs)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/sessions.py:542: in request
    resp = self.send(prep, **send_kwargs)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/sessions.py:655: in send
    r = adapter.send(request, **kwargs)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <requests.adapters.HTTPAdapter object at 0x7f754aabbd60>
request = <PreparedRequest [POST]>, stream = False
timeout = Timeout(connect=None, read=None, total=None), verify = True
cert = None, proxies = OrderedDict()

    def send(self, request, stream=False, timeout=None, verify=True, cert=None, proxies=None):
        """Sends PreparedRequest object. Returns Response object.
    
        :param request: The :class:`PreparedRequest <PreparedRequest>` being sent.
        :param stream: (optional) Whether to stream the request content.
        :param timeout: (optional) How long to wait for the server to send
            data before giving up, as a float, or a :ref:`(connect timeout,
            read timeout) <timeouts>` tuple.
        :type timeout: float or tuple or urllib3 Timeout object
        :param verify: (optional) Either a boolean, in which case it controls whether
            we verify the server's TLS certificate, or a string, in which case it
            must be a path to a CA bundle to use
        :param cert: (optional) Any user-provided SSL certificate to be trusted.
        :param proxies: (optional) The proxies dictionary to apply to the request.
        :rtype: requests.Response
        """
    
        try:
            conn = self.get_connection(request.url, proxies)
        except LocationValueError as e:
            raise InvalidURL(e, request=request)
    
        self.cert_verify(conn, request.url, verify, cert)
        url = self.request_url(request, proxies)
        self.add_headers(request, stream=stream, timeout=timeout, verify=verify, cert=cert, proxies=proxies)
    
        chunked = not (request.body is None or 'Content-Length' in request.headers)
    
        if isinstance(timeout, tuple):
            try:
                connect, read = timeout
                timeout = TimeoutSauce(connect=connect, read=read)
            except ValueError as e:
                # this may raise a string formatting error.
                err = ("Invalid timeout {}. Pass a (connect, read) "
                       "timeout tuple, or a single float to set "
                       "both timeouts to the same value".format(timeout))
                raise ValueError(err)
        elif isinstance(timeout, TimeoutSauce):
            pass
        else:
            timeout = TimeoutSauce(connect=timeout, read=timeout)
    
        try:
            if not chunked:
                resp = conn.urlopen(
                    method=request.method,
                    url=url,
                    body=request.body,
                    headers=request.headers,
                    redirect=False,
                    assert_same_host=False,
                    preload_content=False,
                    decode_content=False,
                    retries=self.max_retries,
                    timeout=timeout
                )
    
            # Send the request.
            else:
                if hasattr(conn, 'proxy_pool'):
                    conn = conn.proxy_pool
    
                low_conn = conn._get_conn(timeout=DEFAULT_POOL_TIMEOUT)
    
                try:
                    low_conn.putrequest(request.method,
                                        url,
                                        skip_accept_encoding=True)
    
                    for header, value in request.headers.items():
                        low_conn.putheader(header, value)
    
                    low_conn.endheaders()
    
                    for i in request.body:
                        low_conn.send(hex(len(i))[2:].encode('utf-8'))
                        low_conn.send(b'\r\n')
                        low_conn.send(i)
                        low_conn.send(b'\r\n')
                    low_conn.send(b'0\r\n\r\n')
    
                    # Receive the response from the server
                    try:
                        # For Python 2.7, use buffering of HTTP responses
                        r = low_conn.getresponse(buffering=True)
                    except TypeError:
                        # For compatibility with Python 3.3+
                        r = low_conn.getresponse()
    
                    resp = HTTPResponse.from_httplib(
                        r,
                        pool=conn,
                        connection=low_conn,
                        preload_content=False,
                        decode_content=False
                    )
                except:
                    # If we hit any problems here, clean up the connection.
                    # Then, reraise so that we can handle the actual exception.
                    low_conn.close()
                    raise
    
        except (ProtocolError, socket.error) as err:
            raise ConnectionError(err, request=request)
    
        except MaxRetryError as e:
            if isinstance(e.reason, ConnectTimeoutError):
                # TODO: Remove this in 3.0.0: see #2811
                if not isinstance(e.reason, NewConnectionError):
                    raise ConnectTimeout(e, request=request)
    
            if isinstance(e.reason, ResponseError):
                raise RetryError(e, request=request)
    
            if isinstance(e.reason, _ProxyError):
                raise ProxyError(e, request=request)
    
            if isinstance(e.reason, _SSLError):
                # This branch is for urllib3 v1.22 and later.
                raise SSLError(e, request=request)
    
>           raise ConnectionError(e, request=request)
E           requests.exceptions.ConnectionError: HTTPSConnectionPool(host='scicrunch.org', port=443): Max retries exceeded with url: /api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7f754b6ace50>: Failed to establish a new connection: [Errno 110] Connection timed out'))

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/adapters.py:516: ConnectionError
----------------------------- Captured stdout call -----------------------------

____________________ test_object_identifier_dataset_search _____________________

self = <urllib3.connection.HTTPSConnection object at 0x7f754ac90e20>

    def _new_conn(self):
        """Establish a socket connection and set nodelay settings on it.
    
        :return: New socket connection.
        """
        extra_kw = {}
        if self.source_address:
            extra_kw["source_address"] = self.source_address
    
        if self.socket_options:
            extra_kw["socket_options"] = self.socket_options
    
        try:
>           conn = connection.create_connection(
                (self._dns_host, self.port), self.timeout, **extra_kw
            )

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connection.py:169: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

address = ('scicrunch.org', 443), timeout = None, source_address = None
socket_options = [(6, 1, 1)]

    def create_connection(
        address,
        timeout=socket._GLOBAL_DEFAULT_TIMEOUT,
        source_address=None,
        socket_options=None,
    ):
        """Connect to *address* and return the socket object.
    
        Convenience function.  Connect to *address* (a 2-tuple ``(host,
        port)``) and return the socket object.  Passing the optional
        *timeout* parameter will set the timeout on the socket instance
        before attempting to connect.  If no *timeout* is supplied, the
        global default timeout setting returned by :func:`socket.getdefaulttimeout`
        is used.  If *source_address* is set it must be a tuple of (host, port)
        for the socket to bind as a source address before making the connection.
        An host of '' or port 0 tells the OS to use the default.
        """
    
        host, port = address
        if host.startswith("["):
            host = host.strip("[]")
        err = None
    
        # Using the value from allowed_gai_family() in the context of getaddrinfo lets
        # us select whether to work with IPv4 DNS records, IPv6 records, or both.
        # The original create_connection function always returns all records.
        family = allowed_gai_family()
    
        try:
            host.encode("idna")
        except UnicodeError:
            return six.raise_from(
                LocationParseError(u"'%s', label empty or too long" % host), None
            )
    
        for res in socket.getaddrinfo(host, port, family, socket.SOCK_STREAM):
            af, socktype, proto, canonname, sa = res
            sock = None
            try:
                sock = socket.socket(af, socktype, proto)
    
                # If provided, set socket level options before connecting.
                _set_socket_options(sock, socket_options)
    
                if timeout is not socket._GLOBAL_DEFAULT_TIMEOUT:
                    sock.settimeout(timeout)
                if source_address:
                    sock.bind(source_address)
                sock.connect(sa)
                return sock
    
            except socket.error as e:
                err = e
                if sock is not None:
                    sock.close()
                    sock = None
    
        if err is not None:
>           raise err

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/util/connection.py:96: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

address = ('scicrunch.org', 443), timeout = None, source_address = None
socket_options = [(6, 1, 1)]

    def create_connection(
        address,
        timeout=socket._GLOBAL_DEFAULT_TIMEOUT,
        source_address=None,
        socket_options=None,
    ):
        """Connect to *address* and return the socket object.
    
        Convenience function.  Connect to *address* (a 2-tuple ``(host,
        port)``) and return the socket object.  Passing the optional
        *timeout* parameter will set the timeout on the socket instance
        before attempting to connect.  If no *timeout* is supplied, the
        global default timeout setting returned by :func:`socket.getdefaulttimeout`
        is used.  If *source_address* is set it must be a tuple of (host, port)
        for the socket to bind as a source address before making the connection.
        An host of '' or port 0 tells the OS to use the default.
        """
    
        host, port = address
        if host.startswith("["):
            host = host.strip("[]")
        err = None
    
        # Using the value from allowed_gai_family() in the context of getaddrinfo lets
        # us select whether to work with IPv4 DNS records, IPv6 records, or both.
        # The original create_connection function always returns all records.
        family = allowed_gai_family()
    
        try:
            host.encode("idna")
        except UnicodeError:
            return six.raise_from(
                LocationParseError(u"'%s', label empty or too long" % host), None
            )
    
        for res in socket.getaddrinfo(host, port, family, socket.SOCK_STREAM):
            af, socktype, proto, canonname, sa = res
            sock = None
            try:
                sock = socket.socket(af, socktype, proto)
    
                # If provided, set socket level options before connecting.
                _set_socket_options(sock, socket_options)
    
                if timeout is not socket._GLOBAL_DEFAULT_TIMEOUT:
                    sock.settimeout(timeout)
                if source_address:
                    sock.bind(source_address)
>               sock.connect(sa)
E               TimeoutError: [Errno 110] Connection timed out

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/util/connection.py:86: TimeoutError

During handling of the above exception, another exception occurred:

self = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754a7dcd90>
method = 'POST'
url = '/api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf'
body = b'{"size": 10, "from": 0, "query": {"query_string": {"fields": ["*identifier"], "query": "*b5f9e5d7-7e09-4855-a923-a966454967d7"}}}'
headers = {'User-Agent': 'python-requests/2.25.1', 'Accept-Encoding': 'gzip, deflate', 'Accept': '*/*', 'Connection': 'keep-alive', 'Content-Length': '129', 'Content-Type': 'application/json'}
retries = Retry(total=0, connect=None, read=False, redirect=None, status=None)
redirect = False, assert_same_host = False
timeout = Timeout(connect=None, read=None, total=None), pool_timeout = None
release_conn = False, chunked = False, body_pos = None
response_kw = {'decode_content': False, 'preload_content': False}
parsed_url = Url(scheme=None, auth=None, host=None, port=None, path='/api/1/elastic/SPARC_PortalDatasets_dev/_search', query='api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf', fragment=None)
destination_scheme = None, conn = None, release_this_conn = True
http_tunnel_required = False, err = None, clean_exit = False

    def urlopen(
        self,
        method,
        url,
        body=None,
        headers=None,
        retries=None,
        redirect=True,
        assert_same_host=True,
        timeout=_Default,
        pool_timeout=None,
        release_conn=None,
        chunked=False,
        body_pos=None,
        **response_kw
    ):
        """
        Get a connection from the pool and perform an HTTP request. This is the
        lowest level call for making a request, so you'll need to specify all
        the raw details.
    
        .. note::
    
           More commonly, it's appropriate to use a convenience method provided
           by :class:`.RequestMethods`, such as :meth:`request`.
    
        .. note::
    
           `release_conn` will only behave as expected if
           `preload_content=False` because we want to make
           `preload_content=False` the default behaviour someday soon without
           breaking backwards compatibility.
    
        :param method:
            HTTP request method (such as GET, POST, PUT, etc.)
    
        :param url:
            The URL to perform the request on.
    
        :param body:
            Data to send in the request body, either :class:`str`, :class:`bytes`,
            an iterable of :class:`str`/:class:`bytes`, or a file-like object.
    
        :param headers:
            Dictionary of custom headers to send, such as User-Agent,
            If-None-Match, etc. If None, pool headers are used. If provided,
            these headers completely replace any pool-specific headers.
    
        :param retries:
            Configure the number of retries to allow before raising a
            :class:`~urllib3.exceptions.MaxRetryError` exception.
    
            Pass ``None`` to retry until you receive a response. Pass a
            :class:`~urllib3.util.retry.Retry` object for fine-grained control
            over different types of retries.
            Pass an integer number to retry connection errors that many times,
            but no other types of errors. Pass zero to never retry.
    
            If ``False``, then retries are disabled and any exception is raised
            immediately. Also, instead of raising a MaxRetryError on redirects,
            the redirect response will be returned.
    
        :type retries: :class:`~urllib3.util.retry.Retry`, False, or an int.
    
        :param redirect:
            If True, automatically handle redirects (status codes 301, 302,
            303, 307, 308). Each redirect counts as a retry. Disabling retries
            will disable redirect, too.
    
        :param assert_same_host:
            If ``True``, will make sure that the host of the pool requests is
            consistent else will raise HostChangedError. When ``False``, you can
            use the pool on an HTTP proxy and request foreign hosts.
    
        :param timeout:
            If specified, overrides the default timeout for this one
            request. It may be a float (in seconds) or an instance of
            :class:`urllib3.util.Timeout`.
    
        :param pool_timeout:
            If set and the pool is set to block=True, then this method will
            block for ``pool_timeout`` seconds and raise EmptyPoolError if no
            connection is available within the time period.
    
        :param release_conn:
            If False, then the urlopen call will not release the connection
            back into the pool once a response is received (but will release if
            you read the entire contents of the response such as when
            `preload_content=True`). This is useful if you're not preloading
            the response's content immediately. You will need to call
            ``r.release_conn()`` on the response ``r`` to return the connection
            back into the pool. If None, it takes the value of
            ``response_kw.get('preload_content', True)``.
    
        :param chunked:
            If True, urllib3 will send the body using chunked transfer
            encoding. Otherwise, urllib3 will send the body using the standard
            content-length form. Defaults to False.
    
        :param int body_pos:
            Position to seek to in file-like body in the event of a retry or
            redirect. Typically this won't need to be set because urllib3 will
            auto-populate the value when needed.
    
        :param \\**response_kw:
            Additional parameters are passed to
            :meth:`urllib3.response.HTTPResponse.from_httplib`
        """
    
        parsed_url = parse_url(url)
        destination_scheme = parsed_url.scheme
    
        if headers is None:
            headers = self.headers
    
        if not isinstance(retries, Retry):
            retries = Retry.from_int(retries, redirect=redirect, default=self.retries)
    
        if release_conn is None:
            release_conn = response_kw.get("preload_content", True)
    
        # Check host
        if assert_same_host and not self.is_same_host(url):
            raise HostChangedError(self, url, retries)
    
        # Ensure that the URL we're connecting to is properly encoded
        if url.startswith("/"):
            url = six.ensure_str(_encode_target(url))
        else:
            url = six.ensure_str(parsed_url.url)
    
        conn = None
    
        # Track whether `conn` needs to be released before
        # returning/raising/recursing. Update this variable if necessary, and
        # leave `release_conn` constant throughout the function. That way, if
        # the function recurses, the original value of `release_conn` will be
        # passed down into the recursive call, and its value will be respected.
        #
        # See issue #651 [1] for details.
        #
        # [1] <https://github.com/urllib3/urllib3/issues/651>
        release_this_conn = release_conn
    
        http_tunnel_required = connection_requires_http_tunnel(
            self.proxy, self.proxy_config, destination_scheme
        )
    
        # Merge the proxy headers. Only done when not using HTTP CONNECT. We
        # have to copy the headers dict so we can safely change it without those
        # changes being reflected in anyone else's copy.
        if not http_tunnel_required:
            headers = headers.copy()
            headers.update(self.proxy_headers)
    
        # Must keep the exception bound to a separate variable or else Python 3
        # complains about UnboundLocalError.
        err = None
    
        # Keep track of whether we cleanly exited the except block. This
        # ensures we do proper cleanup in finally.
        clean_exit = False
    
        # Rewind body position, if needed. Record current position
        # for future rewinds in the event of a redirect/retry.
        body_pos = set_file_position(body, body_pos)
    
        try:
            # Request a connection from the queue.
            timeout_obj = self._get_timeout(timeout)
            conn = self._get_conn(timeout=pool_timeout)
    
            conn.timeout = timeout_obj.connect_timeout
    
            is_new_proxy_conn = self.proxy is not None and not getattr(
                conn, "sock", None
            )
            if is_new_proxy_conn and http_tunnel_required:
                self._prepare_proxy(conn)
    
            # Make the request on the httplib connection object.
>           httplib_response = self._make_request(
                conn,
                method,
                url,
                timeout=timeout_obj,
                body=body,
                headers=headers,
                chunked=chunked,
            )

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py:699: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754a7dcd90>
conn = <urllib3.connection.HTTPSConnection object at 0x7f754ac90e20>
method = 'POST'
url = '/api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf'
timeout = Timeout(connect=None, read=None, total=None), chunked = False
httplib_request_kw = {'body': b'{"size": 10, "from": 0, "query": {"query_string": {"fields": ["*identifier"], "query": "*b5f9e5d7-7e09-4855...p, deflate', 'Accept': '*/*', 'Connection': 'keep-alive', 'Content-Length': '129', 'Content-Type': 'application/json'}}
timeout_obj = Timeout(connect=None, read=None, total=None)

    def _make_request(
        self, conn, method, url, timeout=_Default, chunked=False, **httplib_request_kw
    ):
        """
        Perform a request on a given urllib connection object taken from our
        pool.
    
        :param conn:
            a connection from one of our connection pools
    
        :param timeout:
            Socket timeout in seconds for the request. This can be a
            float or integer, which will set the same timeout value for
            the socket connect and the socket read, or an instance of
            :class:`urllib3.util.Timeout`, which gives you more fine-grained
            control over your timeouts.
        """
        self.num_requests += 1
    
        timeout_obj = self._get_timeout(timeout)
        timeout_obj.start_connect()
        conn.timeout = timeout_obj.connect_timeout
    
        # Trigger any extra validation we need to do.
        try:
>           self._validate_conn(conn)

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py:382: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754a7dcd90>
conn = <urllib3.connection.HTTPSConnection object at 0x7f754ac90e20>

    def _validate_conn(self, conn):
        """
        Called right before a request is made, after the socket is created.
        """
        super(HTTPSConnectionPool, self)._validate_conn(conn)
    
        # Force connect early to allow us to validate the connection.
        if not getattr(conn, "sock", None):  # AppEngine might not have  `.sock`
>           conn.connect()

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py:1010: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connection.HTTPSConnection object at 0x7f754ac90e20>

    def connect(self):
        # Add certificate verification
>       conn = self._new_conn()

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connection.py:353: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connection.HTTPSConnection object at 0x7f754ac90e20>

    def _new_conn(self):
        """Establish a socket connection and set nodelay settings on it.
    
        :return: New socket connection.
        """
        extra_kw = {}
        if self.source_address:
            extra_kw["source_address"] = self.source_address
    
        if self.socket_options:
            extra_kw["socket_options"] = self.socket_options
    
        try:
            conn = connection.create_connection(
                (self._dns_host, self.port), self.timeout, **extra_kw
            )
    
        except SocketTimeout:
            raise ConnectTimeoutError(
                self,
                "Connection to %s timed out. (connect timeout=%s)"
                % (self.host, self.timeout),
            )
    
        except SocketError as e:
>           raise NewConnectionError(
                self, "Failed to establish a new connection: %s" % e
            )
E           urllib3.exceptions.NewConnectionError: <urllib3.connection.HTTPSConnection object at 0x7f754ac90e20>: Failed to establish a new connection: [Errno 110] Connection timed out

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connection.py:181: NewConnectionError

During handling of the above exception, another exception occurred:

self = <requests.adapters.HTTPAdapter object at 0x7f754a7dc5e0>
request = <PreparedRequest [POST]>, stream = False
timeout = Timeout(connect=None, read=None, total=None), verify = True
cert = None, proxies = OrderedDict()

    def send(self, request, stream=False, timeout=None, verify=True, cert=None, proxies=None):
        """Sends PreparedRequest object. Returns Response object.
    
        :param request: The :class:`PreparedRequest <PreparedRequest>` being sent.
        :param stream: (optional) Whether to stream the request content.
        :param timeout: (optional) How long to wait for the server to send
            data before giving up, as a float, or a :ref:`(connect timeout,
            read timeout) <timeouts>` tuple.
        :type timeout: float or tuple or urllib3 Timeout object
        :param verify: (optional) Either a boolean, in which case it controls whether
            we verify the server's TLS certificate, or a string, in which case it
            must be a path to a CA bundle to use
        :param cert: (optional) Any user-provided SSL certificate to be trusted.
        :param proxies: (optional) The proxies dictionary to apply to the request.
        :rtype: requests.Response
        """
    
        try:
            conn = self.get_connection(request.url, proxies)
        except LocationValueError as e:
            raise InvalidURL(e, request=request)
    
        self.cert_verify(conn, request.url, verify, cert)
        url = self.request_url(request, proxies)
        self.add_headers(request, stream=stream, timeout=timeout, verify=verify, cert=cert, proxies=proxies)
    
        chunked = not (request.body is None or 'Content-Length' in request.headers)
    
        if isinstance(timeout, tuple):
            try:
                connect, read = timeout
                timeout = TimeoutSauce(connect=connect, read=read)
            except ValueError as e:
                # this may raise a string formatting error.
                err = ("Invalid timeout {}. Pass a (connect, read) "
                       "timeout tuple, or a single float to set "
                       "both timeouts to the same value".format(timeout))
                raise ValueError(err)
        elif isinstance(timeout, TimeoutSauce):
            pass
        else:
            timeout = TimeoutSauce(connect=timeout, read=timeout)
    
        try:
            if not chunked:
>               resp = conn.urlopen(
                    method=request.method,
                    url=url,
                    body=request.body,
                    headers=request.headers,
                    redirect=False,
                    assert_same_host=False,
                    preload_content=False,
                    decode_content=False,
                    retries=self.max_retries,
                    timeout=timeout
                )

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/adapters.py:439: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754a7dcd90>
method = 'POST'
url = '/api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf'
body = b'{"size": 10, "from": 0, "query": {"query_string": {"fields": ["*identifier"], "query": "*b5f9e5d7-7e09-4855-a923-a966454967d7"}}}'
headers = {'User-Agent': 'python-requests/2.25.1', 'Accept-Encoding': 'gzip, deflate', 'Accept': '*/*', 'Connection': 'keep-alive', 'Content-Length': '129', 'Content-Type': 'application/json'}
retries = Retry(total=0, connect=None, read=False, redirect=None, status=None)
redirect = False, assert_same_host = False
timeout = Timeout(connect=None, read=None, total=None), pool_timeout = None
release_conn = False, chunked = False, body_pos = None
response_kw = {'decode_content': False, 'preload_content': False}
parsed_url = Url(scheme=None, auth=None, host=None, port=None, path='/api/1/elastic/SPARC_PortalDatasets_dev/_search', query='api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf', fragment=None)
destination_scheme = None, conn = None, release_this_conn = True
http_tunnel_required = False, err = None, clean_exit = False

    def urlopen(
        self,
        method,
        url,
        body=None,
        headers=None,
        retries=None,
        redirect=True,
        assert_same_host=True,
        timeout=_Default,
        pool_timeout=None,
        release_conn=None,
        chunked=False,
        body_pos=None,
        **response_kw
    ):
        """
        Get a connection from the pool and perform an HTTP request. This is the
        lowest level call for making a request, so you'll need to specify all
        the raw details.
    
        .. note::
    
           More commonly, it's appropriate to use a convenience method provided
           by :class:`.RequestMethods`, such as :meth:`request`.
    
        .. note::
    
           `release_conn` will only behave as expected if
           `preload_content=False` because we want to make
           `preload_content=False` the default behaviour someday soon without
           breaking backwards compatibility.
    
        :param method:
            HTTP request method (such as GET, POST, PUT, etc.)
    
        :param url:
            The URL to perform the request on.
    
        :param body:
            Data to send in the request body, either :class:`str`, :class:`bytes`,
            an iterable of :class:`str`/:class:`bytes`, or a file-like object.
    
        :param headers:
            Dictionary of custom headers to send, such as User-Agent,
            If-None-Match, etc. If None, pool headers are used. If provided,
            these headers completely replace any pool-specific headers.
    
        :param retries:
            Configure the number of retries to allow before raising a
            :class:`~urllib3.exceptions.MaxRetryError` exception.
    
            Pass ``None`` to retry until you receive a response. Pass a
            :class:`~urllib3.util.retry.Retry` object for fine-grained control
            over different types of retries.
            Pass an integer number to retry connection errors that many times,
            but no other types of errors. Pass zero to never retry.
    
            If ``False``, then retries are disabled and any exception is raised
            immediately. Also, instead of raising a MaxRetryError on redirects,
            the redirect response will be returned.
    
        :type retries: :class:`~urllib3.util.retry.Retry`, False, or an int.
    
        :param redirect:
            If True, automatically handle redirects (status codes 301, 302,
            303, 307, 308). Each redirect counts as a retry. Disabling retries
            will disable redirect, too.
    
        :param assert_same_host:
            If ``True``, will make sure that the host of the pool requests is
            consistent else will raise HostChangedError. When ``False``, you can
            use the pool on an HTTP proxy and request foreign hosts.
    
        :param timeout:
            If specified, overrides the default timeout for this one
            request. It may be a float (in seconds) or an instance of
            :class:`urllib3.util.Timeout`.
    
        :param pool_timeout:
            If set and the pool is set to block=True, then this method will
            block for ``pool_timeout`` seconds and raise EmptyPoolError if no
            connection is available within the time period.
    
        :param release_conn:
            If False, then the urlopen call will not release the connection
            back into the pool once a response is received (but will release if
            you read the entire contents of the response such as when
            `preload_content=True`). This is useful if you're not preloading
            the response's content immediately. You will need to call
            ``r.release_conn()`` on the response ``r`` to return the connection
            back into the pool. If None, it takes the value of
            ``response_kw.get('preload_content', True)``.
    
        :param chunked:
            If True, urllib3 will send the body using chunked transfer
            encoding. Otherwise, urllib3 will send the body using the standard
            content-length form. Defaults to False.
    
        :param int body_pos:
            Position to seek to in file-like body in the event of a retry or
            redirect. Typically this won't need to be set because urllib3 will
            auto-populate the value when needed.
    
        :param \\**response_kw:
            Additional parameters are passed to
            :meth:`urllib3.response.HTTPResponse.from_httplib`
        """
    
        parsed_url = parse_url(url)
        destination_scheme = parsed_url.scheme
    
        if headers is None:
            headers = self.headers
    
        if not isinstance(retries, Retry):
            retries = Retry.from_int(retries, redirect=redirect, default=self.retries)
    
        if release_conn is None:
            release_conn = response_kw.get("preload_content", True)
    
        # Check host
        if assert_same_host and not self.is_same_host(url):
            raise HostChangedError(self, url, retries)
    
        # Ensure that the URL we're connecting to is properly encoded
        if url.startswith("/"):
            url = six.ensure_str(_encode_target(url))
        else:
            url = six.ensure_str(parsed_url.url)
    
        conn = None
    
        # Track whether `conn` needs to be released before
        # returning/raising/recursing. Update this variable if necessary, and
        # leave `release_conn` constant throughout the function. That way, if
        # the function recurses, the original value of `release_conn` will be
        # passed down into the recursive call, and its value will be respected.
        #
        # See issue #651 [1] for details.
        #
        # [1] <https://github.com/urllib3/urllib3/issues/651>
        release_this_conn = release_conn
    
        http_tunnel_required = connection_requires_http_tunnel(
            self.proxy, self.proxy_config, destination_scheme
        )
    
        # Merge the proxy headers. Only done when not using HTTP CONNECT. We
        # have to copy the headers dict so we can safely change it without those
        # changes being reflected in anyone else's copy.
        if not http_tunnel_required:
            headers = headers.copy()
            headers.update(self.proxy_headers)
    
        # Must keep the exception bound to a separate variable or else Python 3
        # complains about UnboundLocalError.
        err = None
    
        # Keep track of whether we cleanly exited the except block. This
        # ensures we do proper cleanup in finally.
        clean_exit = False
    
        # Rewind body position, if needed. Record current position
        # for future rewinds in the event of a redirect/retry.
        body_pos = set_file_position(body, body_pos)
    
        try:
            # Request a connection from the queue.
            timeout_obj = self._get_timeout(timeout)
            conn = self._get_conn(timeout=pool_timeout)
    
            conn.timeout = timeout_obj.connect_timeout
    
            is_new_proxy_conn = self.proxy is not None and not getattr(
                conn, "sock", None
            )
            if is_new_proxy_conn and http_tunnel_required:
                self._prepare_proxy(conn)
    
            # Make the request on the httplib connection object.
            httplib_response = self._make_request(
                conn,
                method,
                url,
                timeout=timeout_obj,
                body=body,
                headers=headers,
                chunked=chunked,
            )
    
            # If we're going to release the connection in ``finally:``, then
            # the response doesn't need to know about the connection. Otherwise
            # it will also try to release it and we'll have a double-release
            # mess.
            response_conn = conn if not release_conn else None
    
            # Pass method to Response for length checking
            response_kw["request_method"] = method
    
            # Import httplib's response into our own wrapper object
            response = self.ResponseCls.from_httplib(
                httplib_response,
                pool=self,
                connection=response_conn,
                retries=retries,
                **response_kw
            )
    
            # Everything went great!
            clean_exit = True
    
        except EmptyPoolError:
            # Didn't get a connection from the pool, no need to clean up
            clean_exit = True
            release_this_conn = False
            raise
    
        except (
            TimeoutError,
            HTTPException,
            SocketError,
            ProtocolError,
            BaseSSLError,
            SSLError,
            CertificateError,
        ) as e:
            # Discard the connection for these exceptions. It will be
            # replaced during the next _get_conn() call.
            clean_exit = False
            if isinstance(e, (BaseSSLError, CertificateError)):
                e = SSLError(e)
            elif isinstance(e, (SocketError, NewConnectionError)) and self.proxy:
                e = ProxyError("Cannot connect to proxy.", e)
            elif isinstance(e, (SocketError, HTTPException)):
                e = ProtocolError("Connection aborted.", e)
    
>           retries = retries.increment(
                method, url, error=e, _pool=self, _stacktrace=sys.exc_info()[2]
            )

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py:755: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = Retry(total=0, connect=None, read=False, redirect=None, status=None)
method = 'POST'
url = '/api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf'
response = None
error = NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7f754ac90e20>: Failed to establish a new connection: [Errno 110] Connection timed out')
_pool = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754a7dcd90>
_stacktrace = <traceback object at 0x7f754ad43100>

    def increment(
        self,
        method=None,
        url=None,
        response=None,
        error=None,
        _pool=None,
        _stacktrace=None,
    ):
        """Return a new Retry object with incremented retry counters.
    
        :param response: A response object, or None, if the server did not
            return a response.
        :type response: :class:`~urllib3.response.HTTPResponse`
        :param Exception error: An error encountered during the request, or
            None if the response was received successfully.
    
        :return: A new ``Retry`` object.
        """
        if self.total is False and error:
            # Disabled, indicate to re-raise the error.
            raise six.reraise(type(error), error, _stacktrace)
    
        total = self.total
        if total is not None:
            total -= 1
    
        connect = self.connect
        read = self.read
        redirect = self.redirect
        status_count = self.status
        other = self.other
        cause = "unknown"
        status = None
        redirect_location = None
    
        if error and self._is_connection_error(error):
            # Connect retry?
            if connect is False:
                raise six.reraise(type(error), error, _stacktrace)
            elif connect is not None:
                connect -= 1
    
        elif error and self._is_read_error(error):
            # Read retry?
            if read is False or not self._is_method_retryable(method):
                raise six.reraise(type(error), error, _stacktrace)
            elif read is not None:
                read -= 1
    
        elif error:
            # Other retry?
            if other is not None:
                other -= 1
    
        elif response and response.get_redirect_location():
            # Redirect retry?
            if redirect is not None:
                redirect -= 1
            cause = "too many redirects"
            redirect_location = response.get_redirect_location()
            status = response.status
    
        else:
            # Incrementing because of a server error like a 500 in
            # status_forcelist and the given method is in the allowed_methods
            cause = ResponseError.GENERIC_ERROR
            if response and response.status:
                if status_count is not None:
                    status_count -= 1
                cause = ResponseError.SPECIFIC_ERROR.format(status_code=response.status)
                status = response.status
    
        history = self.history + (
            RequestHistory(method, url, error, status, redirect_location),
        )
    
        new_retry = self.new(
            total=total,
            connect=connect,
            read=read,
            redirect=redirect,
            status=status_count,
            other=other,
            history=history,
        )
    
        if new_retry.is_exhausted():
>           raise MaxRetryError(_pool, url, error or ResponseError(cause))
E           urllib3.exceptions.MaxRetryError: HTTPSConnectionPool(host='scicrunch.org', port=443): Max retries exceeded with url: /api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7f754ac90e20>: Failed to establish a new connection: [Errno 110] Connection timed out'))

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/util/retry.py:574: MaxRetryError

During handling of the above exception, another exception occurred:

client = <FlaskClient <Flask 'app.main'>>

    def test_object_identifier_dataset_search(client):
        #Dataset 212
        print()
        identifier = "package:b5f9e5d7-7e09-4855-a923-a966454967d7"
        start = timer()
>       r = client.get('/dataset_info/using_object_identifier', query_string={'identifier': identifier})

tests/test_dataset_info.py:231: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/werkzeug/test.py:1029: in get
    return self.open(*args, **kw)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/testing.py:222: in open
    return Client.open(
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/werkzeug/test.py:993: in open
    response = self.run_wsgi_app(environ.copy(), buffered=buffered)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/werkzeug/test.py:884: in run_wsgi_app
    rv = run_wsgi_app(self.application, environ, buffered=buffered)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/werkzeug/test.py:1119: in run_wsgi_app
    app_rv = app(environ, start_response)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:2463: in __call__
    return self.wsgi_app(environ, start_response)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:2449: in wsgi_app
    response = self.handle_exception(e)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask_cors/extension.py:161: in wrapped_function
    return cors_after_request(app.make_response(f(*args, **kwargs)))
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1866: in handle_exception
    reraise(exc_type, exc_value, tb)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/_compat.py:39: in reraise
    raise value
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:2446: in wsgi_app
    response = self.full_dispatch_request()
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1951: in full_dispatch_request
    rv = self.handle_user_exception(e)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask_cors/extension.py:161: in wrapped_function
    return cors_after_request(app.make_response(f(*args, **kwargs)))
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1820: in handle_user_exception
    reraise(exc_type, exc_value, tb)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/_compat.py:39: in reraise
    raise value
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1949: in full_dispatch_request
    rv = self.dispatch_request()
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1935: in dispatch_request
    return self.view_functions[rule.endpoint](**req.view_args)
app/main.py:583: in get_dataset_info_object_identifier
    return reform_dataset_results(dataset_search(query))
app/main.py:663: in dataset_search
    response = requests.post(f'{Config.SCI_CRUNCH_HOST}/_search',
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/api.py:119: in post
    return request('post', url, data=data, json=json, **kwargs)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/api.py:61: in request
    return session.request(method=method, url=url, **kwargs)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/sessions.py:542: in request
    resp = self.send(prep, **send_kwargs)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/sessions.py:655: in send
    r = adapter.send(request, **kwargs)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <requests.adapters.HTTPAdapter object at 0x7f754a7dc5e0>
request = <PreparedRequest [POST]>, stream = False
timeout = Timeout(connect=None, read=None, total=None), verify = True
cert = None, proxies = OrderedDict()

    def send(self, request, stream=False, timeout=None, verify=True, cert=None, proxies=None):
        """Sends PreparedRequest object. Returns Response object.
    
        :param request: The :class:`PreparedRequest <PreparedRequest>` being sent.
        :param stream: (optional) Whether to stream the request content.
        :param timeout: (optional) How long to wait for the server to send
            data before giving up, as a float, or a :ref:`(connect timeout,
            read timeout) <timeouts>` tuple.
        :type timeout: float or tuple or urllib3 Timeout object
        :param verify: (optional) Either a boolean, in which case it controls whether
            we verify the server's TLS certificate, or a string, in which case it
            must be a path to a CA bundle to use
        :param cert: (optional) Any user-provided SSL certificate to be trusted.
        :param proxies: (optional) The proxies dictionary to apply to the request.
        :rtype: requests.Response
        """
    
        try:
            conn = self.get_connection(request.url, proxies)
        except LocationValueError as e:
            raise InvalidURL(e, request=request)
    
        self.cert_verify(conn, request.url, verify, cert)
        url = self.request_url(request, proxies)
        self.add_headers(request, stream=stream, timeout=timeout, verify=verify, cert=cert, proxies=proxies)
    
        chunked = not (request.body is None or 'Content-Length' in request.headers)
    
        if isinstance(timeout, tuple):
            try:
                connect, read = timeout
                timeout = TimeoutSauce(connect=connect, read=read)
            except ValueError as e:
                # this may raise a string formatting error.
                err = ("Invalid timeout {}. Pass a (connect, read) "
                       "timeout tuple, or a single float to set "
                       "both timeouts to the same value".format(timeout))
                raise ValueError(err)
        elif isinstance(timeout, TimeoutSauce):
            pass
        else:
            timeout = TimeoutSauce(connect=timeout, read=timeout)
    
        try:
            if not chunked:
                resp = conn.urlopen(
                    method=request.method,
                    url=url,
                    body=request.body,
                    headers=request.headers,
                    redirect=False,
                    assert_same_host=False,
                    preload_content=False,
                    decode_content=False,
                    retries=self.max_retries,
                    timeout=timeout
                )
    
            # Send the request.
            else:
                if hasattr(conn, 'proxy_pool'):
                    conn = conn.proxy_pool
    
                low_conn = conn._get_conn(timeout=DEFAULT_POOL_TIMEOUT)
    
                try:
                    low_conn.putrequest(request.method,
                                        url,
                                        skip_accept_encoding=True)
    
                    for header, value in request.headers.items():
                        low_conn.putheader(header, value)
    
                    low_conn.endheaders()
    
                    for i in request.body:
                        low_conn.send(hex(len(i))[2:].encode('utf-8'))
                        low_conn.send(b'\r\n')
                        low_conn.send(i)
                        low_conn.send(b'\r\n')
                    low_conn.send(b'0\r\n\r\n')
    
                    # Receive the response from the server
                    try:
                        # For Python 2.7, use buffering of HTTP responses
                        r = low_conn.getresponse(buffering=True)
                    except TypeError:
                        # For compatibility with Python 3.3+
                        r = low_conn.getresponse()
    
                    resp = HTTPResponse.from_httplib(
                        r,
                        pool=conn,
                        connection=low_conn,
                        preload_content=False,
                        decode_content=False
                    )
                except:
                    # If we hit any problems here, clean up the connection.
                    # Then, reraise so that we can handle the actual exception.
                    low_conn.close()
                    raise
    
        except (ProtocolError, socket.error) as err:
            raise ConnectionError(err, request=request)
    
        except MaxRetryError as e:
            if isinstance(e.reason, ConnectTimeoutError):
                # TODO: Remove this in 3.0.0: see #2811
                if not isinstance(e.reason, NewConnectionError):
                    raise ConnectTimeout(e, request=request)
    
            if isinstance(e.reason, ResponseError):
                raise RetryError(e, request=request)
    
            if isinstance(e.reason, _ProxyError):
                raise ProxyError(e, request=request)
    
            if isinstance(e.reason, _SSLError):
                # This branch is for urllib3 v1.22 and later.
                raise SSLError(e, request=request)
    
>           raise ConnectionError(e, request=request)
E           requests.exceptions.ConnectionError: HTTPSConnectionPool(host='scicrunch.org', port=443): Max retries exceeded with url: /api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7f754ac90e20>: Failed to establish a new connection: [Errno 110] Connection timed out'))

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/adapters.py:516: ConnectionError
----------------------------- Captured stdout call -----------------------------

___________________ test_pennsieve_identifier_dataset_search ___________________

self = <urllib3.connection.HTTPSConnection object at 0x7f754aa4adf0>

    def _new_conn(self):
        """Establish a socket connection and set nodelay settings on it.
    
        :return: New socket connection.
        """
        extra_kw = {}
        if self.source_address:
            extra_kw["source_address"] = self.source_address
    
        if self.socket_options:
            extra_kw["socket_options"] = self.socket_options
    
        try:
>           conn = connection.create_connection(
                (self._dns_host, self.port), self.timeout, **extra_kw
            )

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connection.py:169: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

address = ('scicrunch.org', 443), timeout = None, source_address = None
socket_options = [(6, 1, 1)]

    def create_connection(
        address,
        timeout=socket._GLOBAL_DEFAULT_TIMEOUT,
        source_address=None,
        socket_options=None,
    ):
        """Connect to *address* and return the socket object.
    
        Convenience function.  Connect to *address* (a 2-tuple ``(host,
        port)``) and return the socket object.  Passing the optional
        *timeout* parameter will set the timeout on the socket instance
        before attempting to connect.  If no *timeout* is supplied, the
        global default timeout setting returned by :func:`socket.getdefaulttimeout`
        is used.  If *source_address* is set it must be a tuple of (host, port)
        for the socket to bind as a source address before making the connection.
        An host of '' or port 0 tells the OS to use the default.
        """
    
        host, port = address
        if host.startswith("["):
            host = host.strip("[]")
        err = None
    
        # Using the value from allowed_gai_family() in the context of getaddrinfo lets
        # us select whether to work with IPv4 DNS records, IPv6 records, or both.
        # The original create_connection function always returns all records.
        family = allowed_gai_family()
    
        try:
            host.encode("idna")
        except UnicodeError:
            return six.raise_from(
                LocationParseError(u"'%s', label empty or too long" % host), None
            )
    
        for res in socket.getaddrinfo(host, port, family, socket.SOCK_STREAM):
            af, socktype, proto, canonname, sa = res
            sock = None
            try:
                sock = socket.socket(af, socktype, proto)
    
                # If provided, set socket level options before connecting.
                _set_socket_options(sock, socket_options)
    
                if timeout is not socket._GLOBAL_DEFAULT_TIMEOUT:
                    sock.settimeout(timeout)
                if source_address:
                    sock.bind(source_address)
                sock.connect(sa)
                return sock
    
            except socket.error as e:
                err = e
                if sock is not None:
                    sock.close()
                    sock = None
    
        if err is not None:
>           raise err

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/util/connection.py:96: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

address = ('scicrunch.org', 443), timeout = None, source_address = None
socket_options = [(6, 1, 1)]

    def create_connection(
        address,
        timeout=socket._GLOBAL_DEFAULT_TIMEOUT,
        source_address=None,
        socket_options=None,
    ):
        """Connect to *address* and return the socket object.
    
        Convenience function.  Connect to *address* (a 2-tuple ``(host,
        port)``) and return the socket object.  Passing the optional
        *timeout* parameter will set the timeout on the socket instance
        before attempting to connect.  If no *timeout* is supplied, the
        global default timeout setting returned by :func:`socket.getdefaulttimeout`
        is used.  If *source_address* is set it must be a tuple of (host, port)
        for the socket to bind as a source address before making the connection.
        An host of '' or port 0 tells the OS to use the default.
        """
    
        host, port = address
        if host.startswith("["):
            host = host.strip("[]")
        err = None
    
        # Using the value from allowed_gai_family() in the context of getaddrinfo lets
        # us select whether to work with IPv4 DNS records, IPv6 records, or both.
        # The original create_connection function always returns all records.
        family = allowed_gai_family()
    
        try:
            host.encode("idna")
        except UnicodeError:
            return six.raise_from(
                LocationParseError(u"'%s', label empty or too long" % host), None
            )
    
        for res in socket.getaddrinfo(host, port, family, socket.SOCK_STREAM):
            af, socktype, proto, canonname, sa = res
            sock = None
            try:
                sock = socket.socket(af, socktype, proto)
    
                # If provided, set socket level options before connecting.
                _set_socket_options(sock, socket_options)
    
                if timeout is not socket._GLOBAL_DEFAULT_TIMEOUT:
                    sock.settimeout(timeout)
                if source_address:
                    sock.bind(source_address)
>               sock.connect(sa)
E               TimeoutError: [Errno 110] Connection timed out

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/util/connection.py:86: TimeoutError

During handling of the above exception, another exception occurred:

self = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754a7ad130>
method = 'POST'
url = '/api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf'
body = b'{"query": {"term": {"pennsieve.identifier.aggregate": "43"}}}'
headers = {'User-Agent': 'python-requests/2.25.1', 'Accept-Encoding': 'gzip, deflate', 'Accept': '*/*', 'Connection': 'keep-alive', 'Content-Length': '61', 'Content-Type': 'application/json'}
retries = Retry(total=0, connect=None, read=False, redirect=None, status=None)
redirect = False, assert_same_host = False
timeout = Timeout(connect=None, read=None, total=None), pool_timeout = None
release_conn = False, chunked = False, body_pos = None
response_kw = {'decode_content': False, 'preload_content': False}
parsed_url = Url(scheme=None, auth=None, host=None, port=None, path='/api/1/elastic/SPARC_PortalDatasets_dev/_search', query='api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf', fragment=None)
destination_scheme = None, conn = None, release_this_conn = True
http_tunnel_required = False, err = None, clean_exit = False

    def urlopen(
        self,
        method,
        url,
        body=None,
        headers=None,
        retries=None,
        redirect=True,
        assert_same_host=True,
        timeout=_Default,
        pool_timeout=None,
        release_conn=None,
        chunked=False,
        body_pos=None,
        **response_kw
    ):
        """
        Get a connection from the pool and perform an HTTP request. This is the
        lowest level call for making a request, so you'll need to specify all
        the raw details.
    
        .. note::
    
           More commonly, it's appropriate to use a convenience method provided
           by :class:`.RequestMethods`, such as :meth:`request`.
    
        .. note::
    
           `release_conn` will only behave as expected if
           `preload_content=False` because we want to make
           `preload_content=False` the default behaviour someday soon without
           breaking backwards compatibility.
    
        :param method:
            HTTP request method (such as GET, POST, PUT, etc.)
    
        :param url:
            The URL to perform the request on.
    
        :param body:
            Data to send in the request body, either :class:`str`, :class:`bytes`,
            an iterable of :class:`str`/:class:`bytes`, or a file-like object.
    
        :param headers:
            Dictionary of custom headers to send, such as User-Agent,
            If-None-Match, etc. If None, pool headers are used. If provided,
            these headers completely replace any pool-specific headers.
    
        :param retries:
            Configure the number of retries to allow before raising a
            :class:`~urllib3.exceptions.MaxRetryError` exception.
    
            Pass ``None`` to retry until you receive a response. Pass a
            :class:`~urllib3.util.retry.Retry` object for fine-grained control
            over different types of retries.
            Pass an integer number to retry connection errors that many times,
            but no other types of errors. Pass zero to never retry.
    
            If ``False``, then retries are disabled and any exception is raised
            immediately. Also, instead of raising a MaxRetryError on redirects,
            the redirect response will be returned.
    
        :type retries: :class:`~urllib3.util.retry.Retry`, False, or an int.
    
        :param redirect:
            If True, automatically handle redirects (status codes 301, 302,
            303, 307, 308). Each redirect counts as a retry. Disabling retries
            will disable redirect, too.
    
        :param assert_same_host:
            If ``True``, will make sure that the host of the pool requests is
            consistent else will raise HostChangedError. When ``False``, you can
            use the pool on an HTTP proxy and request foreign hosts.
    
        :param timeout:
            If specified, overrides the default timeout for this one
            request. It may be a float (in seconds) or an instance of
            :class:`urllib3.util.Timeout`.
    
        :param pool_timeout:
            If set and the pool is set to block=True, then this method will
            block for ``pool_timeout`` seconds and raise EmptyPoolError if no
            connection is available within the time period.
    
        :param release_conn:
            If False, then the urlopen call will not release the connection
            back into the pool once a response is received (but will release if
            you read the entire contents of the response such as when
            `preload_content=True`). This is useful if you're not preloading
            the response's content immediately. You will need to call
            ``r.release_conn()`` on the response ``r`` to return the connection
            back into the pool. If None, it takes the value of
            ``response_kw.get('preload_content', True)``.
    
        :param chunked:
            If True, urllib3 will send the body using chunked transfer
            encoding. Otherwise, urllib3 will send the body using the standard
            content-length form. Defaults to False.
    
        :param int body_pos:
            Position to seek to in file-like body in the event of a retry or
            redirect. Typically this won't need to be set because urllib3 will
            auto-populate the value when needed.
    
        :param \\**response_kw:
            Additional parameters are passed to
            :meth:`urllib3.response.HTTPResponse.from_httplib`
        """
    
        parsed_url = parse_url(url)
        destination_scheme = parsed_url.scheme
    
        if headers is None:
            headers = self.headers
    
        if not isinstance(retries, Retry):
            retries = Retry.from_int(retries, redirect=redirect, default=self.retries)
    
        if release_conn is None:
            release_conn = response_kw.get("preload_content", True)
    
        # Check host
        if assert_same_host and not self.is_same_host(url):
            raise HostChangedError(self, url, retries)
    
        # Ensure that the URL we're connecting to is properly encoded
        if url.startswith("/"):
            url = six.ensure_str(_encode_target(url))
        else:
            url = six.ensure_str(parsed_url.url)
    
        conn = None
    
        # Track whether `conn` needs to be released before
        # returning/raising/recursing. Update this variable if necessary, and
        # leave `release_conn` constant throughout the function. That way, if
        # the function recurses, the original value of `release_conn` will be
        # passed down into the recursive call, and its value will be respected.
        #
        # See issue #651 [1] for details.
        #
        # [1] <https://github.com/urllib3/urllib3/issues/651>
        release_this_conn = release_conn
    
        http_tunnel_required = connection_requires_http_tunnel(
            self.proxy, self.proxy_config, destination_scheme
        )
    
        # Merge the proxy headers. Only done when not using HTTP CONNECT. We
        # have to copy the headers dict so we can safely change it without those
        # changes being reflected in anyone else's copy.
        if not http_tunnel_required:
            headers = headers.copy()
            headers.update(self.proxy_headers)
    
        # Must keep the exception bound to a separate variable or else Python 3
        # complains about UnboundLocalError.
        err = None
    
        # Keep track of whether we cleanly exited the except block. This
        # ensures we do proper cleanup in finally.
        clean_exit = False
    
        # Rewind body position, if needed. Record current position
        # for future rewinds in the event of a redirect/retry.
        body_pos = set_file_position(body, body_pos)
    
        try:
            # Request a connection from the queue.
            timeout_obj = self._get_timeout(timeout)
            conn = self._get_conn(timeout=pool_timeout)
    
            conn.timeout = timeout_obj.connect_timeout
    
            is_new_proxy_conn = self.proxy is not None and not getattr(
                conn, "sock", None
            )
            if is_new_proxy_conn and http_tunnel_required:
                self._prepare_proxy(conn)
    
            # Make the request on the httplib connection object.
>           httplib_response = self._make_request(
                conn,
                method,
                url,
                timeout=timeout_obj,
                body=body,
                headers=headers,
                chunked=chunked,
            )

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py:699: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754a7ad130>
conn = <urllib3.connection.HTTPSConnection object at 0x7f754aa4adf0>
method = 'POST'
url = '/api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf'
timeout = Timeout(connect=None, read=None, total=None), chunked = False
httplib_request_kw = {'body': b'{"query": {"term": {"pennsieve.identifier.aggregate": "43"}}}', 'headers': {'User-Agent': 'python-requests/...ip, deflate', 'Accept': '*/*', 'Connection': 'keep-alive', 'Content-Length': '61', 'Content-Type': 'application/json'}}
timeout_obj = Timeout(connect=None, read=None, total=None)

    def _make_request(
        self, conn, method, url, timeout=_Default, chunked=False, **httplib_request_kw
    ):
        """
        Perform a request on a given urllib connection object taken from our
        pool.
    
        :param conn:
            a connection from one of our connection pools
    
        :param timeout:
            Socket timeout in seconds for the request. This can be a
            float or integer, which will set the same timeout value for
            the socket connect and the socket read, or an instance of
            :class:`urllib3.util.Timeout`, which gives you more fine-grained
            control over your timeouts.
        """
        self.num_requests += 1
    
        timeout_obj = self._get_timeout(timeout)
        timeout_obj.start_connect()
        conn.timeout = timeout_obj.connect_timeout
    
        # Trigger any extra validation we need to do.
        try:
>           self._validate_conn(conn)

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py:382: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754a7ad130>
conn = <urllib3.connection.HTTPSConnection object at 0x7f754aa4adf0>

    def _validate_conn(self, conn):
        """
        Called right before a request is made, after the socket is created.
        """
        super(HTTPSConnectionPool, self)._validate_conn(conn)
    
        # Force connect early to allow us to validate the connection.
        if not getattr(conn, "sock", None):  # AppEngine might not have  `.sock`
>           conn.connect()

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py:1010: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connection.HTTPSConnection object at 0x7f754aa4adf0>

    def connect(self):
        # Add certificate verification
>       conn = self._new_conn()

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connection.py:353: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connection.HTTPSConnection object at 0x7f754aa4adf0>

    def _new_conn(self):
        """Establish a socket connection and set nodelay settings on it.
    
        :return: New socket connection.
        """
        extra_kw = {}
        if self.source_address:
            extra_kw["source_address"] = self.source_address
    
        if self.socket_options:
            extra_kw["socket_options"] = self.socket_options
    
        try:
            conn = connection.create_connection(
                (self._dns_host, self.port), self.timeout, **extra_kw
            )
    
        except SocketTimeout:
            raise ConnectTimeoutError(
                self,
                "Connection to %s timed out. (connect timeout=%s)"
                % (self.host, self.timeout),
            )
    
        except SocketError as e:
>           raise NewConnectionError(
                self, "Failed to establish a new connection: %s" % e
            )
E           urllib3.exceptions.NewConnectionError: <urllib3.connection.HTTPSConnection object at 0x7f754aa4adf0>: Failed to establish a new connection: [Errno 110] Connection timed out

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connection.py:181: NewConnectionError

During handling of the above exception, another exception occurred:

self = <requests.adapters.HTTPAdapter object at 0x7f754a7ad460>
request = <PreparedRequest [POST]>, stream = False
timeout = Timeout(connect=None, read=None, total=None), verify = True
cert = None, proxies = OrderedDict()

    def send(self, request, stream=False, timeout=None, verify=True, cert=None, proxies=None):
        """Sends PreparedRequest object. Returns Response object.
    
        :param request: The :class:`PreparedRequest <PreparedRequest>` being sent.
        :param stream: (optional) Whether to stream the request content.
        :param timeout: (optional) How long to wait for the server to send
            data before giving up, as a float, or a :ref:`(connect timeout,
            read timeout) <timeouts>` tuple.
        :type timeout: float or tuple or urllib3 Timeout object
        :param verify: (optional) Either a boolean, in which case it controls whether
            we verify the server's TLS certificate, or a string, in which case it
            must be a path to a CA bundle to use
        :param cert: (optional) Any user-provided SSL certificate to be trusted.
        :param proxies: (optional) The proxies dictionary to apply to the request.
        :rtype: requests.Response
        """
    
        try:
            conn = self.get_connection(request.url, proxies)
        except LocationValueError as e:
            raise InvalidURL(e, request=request)
    
        self.cert_verify(conn, request.url, verify, cert)
        url = self.request_url(request, proxies)
        self.add_headers(request, stream=stream, timeout=timeout, verify=verify, cert=cert, proxies=proxies)
    
        chunked = not (request.body is None or 'Content-Length' in request.headers)
    
        if isinstance(timeout, tuple):
            try:
                connect, read = timeout
                timeout = TimeoutSauce(connect=connect, read=read)
            except ValueError as e:
                # this may raise a string formatting error.
                err = ("Invalid timeout {}. Pass a (connect, read) "
                       "timeout tuple, or a single float to set "
                       "both timeouts to the same value".format(timeout))
                raise ValueError(err)
        elif isinstance(timeout, TimeoutSauce):
            pass
        else:
            timeout = TimeoutSauce(connect=timeout, read=timeout)
    
        try:
            if not chunked:
>               resp = conn.urlopen(
                    method=request.method,
                    url=url,
                    body=request.body,
                    headers=request.headers,
                    redirect=False,
                    assert_same_host=False,
                    preload_content=False,
                    decode_content=False,
                    retries=self.max_retries,
                    timeout=timeout
                )

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/adapters.py:439: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754a7ad130>
method = 'POST'
url = '/api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf'
body = b'{"query": {"term": {"pennsieve.identifier.aggregate": "43"}}}'
headers = {'User-Agent': 'python-requests/2.25.1', 'Accept-Encoding': 'gzip, deflate', 'Accept': '*/*', 'Connection': 'keep-alive', 'Content-Length': '61', 'Content-Type': 'application/json'}
retries = Retry(total=0, connect=None, read=False, redirect=None, status=None)
redirect = False, assert_same_host = False
timeout = Timeout(connect=None, read=None, total=None), pool_timeout = None
release_conn = False, chunked = False, body_pos = None
response_kw = {'decode_content': False, 'preload_content': False}
parsed_url = Url(scheme=None, auth=None, host=None, port=None, path='/api/1/elastic/SPARC_PortalDatasets_dev/_search', query='api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf', fragment=None)
destination_scheme = None, conn = None, release_this_conn = True
http_tunnel_required = False, err = None, clean_exit = False

    def urlopen(
        self,
        method,
        url,
        body=None,
        headers=None,
        retries=None,
        redirect=True,
        assert_same_host=True,
        timeout=_Default,
        pool_timeout=None,
        release_conn=None,
        chunked=False,
        body_pos=None,
        **response_kw
    ):
        """
        Get a connection from the pool and perform an HTTP request. This is the
        lowest level call for making a request, so you'll need to specify all
        the raw details.
    
        .. note::
    
           More commonly, it's appropriate to use a convenience method provided
           by :class:`.RequestMethods`, such as :meth:`request`.
    
        .. note::
    
           `release_conn` will only behave as expected if
           `preload_content=False` because we want to make
           `preload_content=False` the default behaviour someday soon without
           breaking backwards compatibility.
    
        :param method:
            HTTP request method (such as GET, POST, PUT, etc.)
    
        :param url:
            The URL to perform the request on.
    
        :param body:
            Data to send in the request body, either :class:`str`, :class:`bytes`,
            an iterable of :class:`str`/:class:`bytes`, or a file-like object.
    
        :param headers:
            Dictionary of custom headers to send, such as User-Agent,
            If-None-Match, etc. If None, pool headers are used. If provided,
            these headers completely replace any pool-specific headers.
    
        :param retries:
            Configure the number of retries to allow before raising a
            :class:`~urllib3.exceptions.MaxRetryError` exception.
    
            Pass ``None`` to retry until you receive a response. Pass a
            :class:`~urllib3.util.retry.Retry` object for fine-grained control
            over different types of retries.
            Pass an integer number to retry connection errors that many times,
            but no other types of errors. Pass zero to never retry.
    
            If ``False``, then retries are disabled and any exception is raised
            immediately. Also, instead of raising a MaxRetryError on redirects,
            the redirect response will be returned.
    
        :type retries: :class:`~urllib3.util.retry.Retry`, False, or an int.
    
        :param redirect:
            If True, automatically handle redirects (status codes 301, 302,
            303, 307, 308). Each redirect counts as a retry. Disabling retries
            will disable redirect, too.
    
        :param assert_same_host:
            If ``True``, will make sure that the host of the pool requests is
            consistent else will raise HostChangedError. When ``False``, you can
            use the pool on an HTTP proxy and request foreign hosts.
    
        :param timeout:
            If specified, overrides the default timeout for this one
            request. It may be a float (in seconds) or an instance of
            :class:`urllib3.util.Timeout`.
    
        :param pool_timeout:
            If set and the pool is set to block=True, then this method will
            block for ``pool_timeout`` seconds and raise EmptyPoolError if no
            connection is available within the time period.
    
        :param release_conn:
            If False, then the urlopen call will not release the connection
            back into the pool once a response is received (but will release if
            you read the entire contents of the response such as when
            `preload_content=True`). This is useful if you're not preloading
            the response's content immediately. You will need to call
            ``r.release_conn()`` on the response ``r`` to return the connection
            back into the pool. If None, it takes the value of
            ``response_kw.get('preload_content', True)``.
    
        :param chunked:
            If True, urllib3 will send the body using chunked transfer
            encoding. Otherwise, urllib3 will send the body using the standard
            content-length form. Defaults to False.
    
        :param int body_pos:
            Position to seek to in file-like body in the event of a retry or
            redirect. Typically this won't need to be set because urllib3 will
            auto-populate the value when needed.
    
        :param \\**response_kw:
            Additional parameters are passed to
            :meth:`urllib3.response.HTTPResponse.from_httplib`
        """
    
        parsed_url = parse_url(url)
        destination_scheme = parsed_url.scheme
    
        if headers is None:
            headers = self.headers
    
        if not isinstance(retries, Retry):
            retries = Retry.from_int(retries, redirect=redirect, default=self.retries)
    
        if release_conn is None:
            release_conn = response_kw.get("preload_content", True)
    
        # Check host
        if assert_same_host and not self.is_same_host(url):
            raise HostChangedError(self, url, retries)
    
        # Ensure that the URL we're connecting to is properly encoded
        if url.startswith("/"):
            url = six.ensure_str(_encode_target(url))
        else:
            url = six.ensure_str(parsed_url.url)
    
        conn = None
    
        # Track whether `conn` needs to be released before
        # returning/raising/recursing. Update this variable if necessary, and
        # leave `release_conn` constant throughout the function. That way, if
        # the function recurses, the original value of `release_conn` will be
        # passed down into the recursive call, and its value will be respected.
        #
        # See issue #651 [1] for details.
        #
        # [1] <https://github.com/urllib3/urllib3/issues/651>
        release_this_conn = release_conn
    
        http_tunnel_required = connection_requires_http_tunnel(
            self.proxy, self.proxy_config, destination_scheme
        )
    
        # Merge the proxy headers. Only done when not using HTTP CONNECT. We
        # have to copy the headers dict so we can safely change it without those
        # changes being reflected in anyone else's copy.
        if not http_tunnel_required:
            headers = headers.copy()
            headers.update(self.proxy_headers)
    
        # Must keep the exception bound to a separate variable or else Python 3
        # complains about UnboundLocalError.
        err = None
    
        # Keep track of whether we cleanly exited the except block. This
        # ensures we do proper cleanup in finally.
        clean_exit = False
    
        # Rewind body position, if needed. Record current position
        # for future rewinds in the event of a redirect/retry.
        body_pos = set_file_position(body, body_pos)
    
        try:
            # Request a connection from the queue.
            timeout_obj = self._get_timeout(timeout)
            conn = self._get_conn(timeout=pool_timeout)
    
            conn.timeout = timeout_obj.connect_timeout
    
            is_new_proxy_conn = self.proxy is not None and not getattr(
                conn, "sock", None
            )
            if is_new_proxy_conn and http_tunnel_required:
                self._prepare_proxy(conn)
    
            # Make the request on the httplib connection object.
            httplib_response = self._make_request(
                conn,
                method,
                url,
                timeout=timeout_obj,
                body=body,
                headers=headers,
                chunked=chunked,
            )
    
            # If we're going to release the connection in ``finally:``, then
            # the response doesn't need to know about the connection. Otherwise
            # it will also try to release it and we'll have a double-release
            # mess.
            response_conn = conn if not release_conn else None
    
            # Pass method to Response for length checking
            response_kw["request_method"] = method
    
            # Import httplib's response into our own wrapper object
            response = self.ResponseCls.from_httplib(
                httplib_response,
                pool=self,
                connection=response_conn,
                retries=retries,
                **response_kw
            )
    
            # Everything went great!
            clean_exit = True
    
        except EmptyPoolError:
            # Didn't get a connection from the pool, no need to clean up
            clean_exit = True
            release_this_conn = False
            raise
    
        except (
            TimeoutError,
            HTTPException,
            SocketError,
            ProtocolError,
            BaseSSLError,
            SSLError,
            CertificateError,
        ) as e:
            # Discard the connection for these exceptions. It will be
            # replaced during the next _get_conn() call.
            clean_exit = False
            if isinstance(e, (BaseSSLError, CertificateError)):
                e = SSLError(e)
            elif isinstance(e, (SocketError, NewConnectionError)) and self.proxy:
                e = ProxyError("Cannot connect to proxy.", e)
            elif isinstance(e, (SocketError, HTTPException)):
                e = ProtocolError("Connection aborted.", e)
    
>           retries = retries.increment(
                method, url, error=e, _pool=self, _stacktrace=sys.exc_info()[2]
            )

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py:755: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = Retry(total=0, connect=None, read=False, redirect=None, status=None)
method = 'POST'
url = '/api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf'
response = None
error = NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7f754aa4adf0>: Failed to establish a new connection: [Errno 110] Connection timed out')
_pool = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754a7ad130>
_stacktrace = <traceback object at 0x7f754a7bc440>

    def increment(
        self,
        method=None,
        url=None,
        response=None,
        error=None,
        _pool=None,
        _stacktrace=None,
    ):
        """Return a new Retry object with incremented retry counters.
    
        :param response: A response object, or None, if the server did not
            return a response.
        :type response: :class:`~urllib3.response.HTTPResponse`
        :param Exception error: An error encountered during the request, or
            None if the response was received successfully.
    
        :return: A new ``Retry`` object.
        """
        if self.total is False and error:
            # Disabled, indicate to re-raise the error.
            raise six.reraise(type(error), error, _stacktrace)
    
        total = self.total
        if total is not None:
            total -= 1
    
        connect = self.connect
        read = self.read
        redirect = self.redirect
        status_count = self.status
        other = self.other
        cause = "unknown"
        status = None
        redirect_location = None
    
        if error and self._is_connection_error(error):
            # Connect retry?
            if connect is False:
                raise six.reraise(type(error), error, _stacktrace)
            elif connect is not None:
                connect -= 1
    
        elif error and self._is_read_error(error):
            # Read retry?
            if read is False or not self._is_method_retryable(method):
                raise six.reraise(type(error), error, _stacktrace)
            elif read is not None:
                read -= 1
    
        elif error:
            # Other retry?
            if other is not None:
                other -= 1
    
        elif response and response.get_redirect_location():
            # Redirect retry?
            if redirect is not None:
                redirect -= 1
            cause = "too many redirects"
            redirect_location = response.get_redirect_location()
            status = response.status
    
        else:
            # Incrementing because of a server error like a 500 in
            # status_forcelist and the given method is in the allowed_methods
            cause = ResponseError.GENERIC_ERROR
            if response and response.status:
                if status_count is not None:
                    status_count -= 1
                cause = ResponseError.SPECIFIC_ERROR.format(status_code=response.status)
                status = response.status
    
        history = self.history + (
            RequestHistory(method, url, error, status, redirect_location),
        )
    
        new_retry = self.new(
            total=total,
            connect=connect,
            read=read,
            redirect=redirect,
            status=status_count,
            other=other,
            history=history,
        )
    
        if new_retry.is_exhausted():
>           raise MaxRetryError(_pool, url, error or ResponseError(cause))
E           urllib3.exceptions.MaxRetryError: HTTPSConnectionPool(host='scicrunch.org', port=443): Max retries exceeded with url: /api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7f754aa4adf0>: Failed to establish a new connection: [Errno 110] Connection timed out'))

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/util/retry.py:574: MaxRetryError

During handling of the above exception, another exception occurred:

client = <FlaskClient <Flask 'app.main'>>

    def test_pennsieve_identifier_dataset_search(client):
        print()
        identifier = "43"
        start = timer()
>       r = client.get('/dataset_info/using_pennsieve_identifier', query_string={'identifier': identifier})

tests/test_dataset_info.py:259: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/werkzeug/test.py:1029: in get
    return self.open(*args, **kw)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/testing.py:222: in open
    return Client.open(
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/werkzeug/test.py:993: in open
    response = self.run_wsgi_app(environ.copy(), buffered=buffered)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/werkzeug/test.py:884: in run_wsgi_app
    rv = run_wsgi_app(self.application, environ, buffered=buffered)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/werkzeug/test.py:1119: in run_wsgi_app
    app_rv = app(environ, start_response)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:2463: in __call__
    return self.wsgi_app(environ, start_response)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:2449: in wsgi_app
    response = self.handle_exception(e)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask_cors/extension.py:161: in wrapped_function
    return cors_after_request(app.make_response(f(*args, **kwargs)))
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1866: in handle_exception
    reraise(exc_type, exc_value, tb)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/_compat.py:39: in reraise
    raise value
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:2446: in wsgi_app
    response = self.full_dispatch_request()
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1951: in full_dispatch_request
    rv = self.handle_user_exception(e)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask_cors/extension.py:161: in wrapped_function
    return cors_after_request(app.make_response(f(*args, **kwargs)))
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1820: in handle_user_exception
    reraise(exc_type, exc_value, tb)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/_compat.py:39: in reraise
    raise value
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1949: in full_dispatch_request
    rv = self.dispatch_request()
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1935: in dispatch_request
    return self.view_functions[rule.endpoint](**req.view_args)
app/main.py:602: in get_dataset_info_pennsieve_identifier
    return reform_dataset_results(dataset_search(query))
app/main.py:663: in dataset_search
    response = requests.post(f'{Config.SCI_CRUNCH_HOST}/_search',
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/api.py:119: in post
    return request('post', url, data=data, json=json, **kwargs)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/api.py:61: in request
    return session.request(method=method, url=url, **kwargs)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/sessions.py:542: in request
    resp = self.send(prep, **send_kwargs)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/sessions.py:655: in send
    r = adapter.send(request, **kwargs)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <requests.adapters.HTTPAdapter object at 0x7f754a7ad460>
request = <PreparedRequest [POST]>, stream = False
timeout = Timeout(connect=None, read=None, total=None), verify = True
cert = None, proxies = OrderedDict()

    def send(self, request, stream=False, timeout=None, verify=True, cert=None, proxies=None):
        """Sends PreparedRequest object. Returns Response object.
    
        :param request: The :class:`PreparedRequest <PreparedRequest>` being sent.
        :param stream: (optional) Whether to stream the request content.
        :param timeout: (optional) How long to wait for the server to send
            data before giving up, as a float, or a :ref:`(connect timeout,
            read timeout) <timeouts>` tuple.
        :type timeout: float or tuple or urllib3 Timeout object
        :param verify: (optional) Either a boolean, in which case it controls whether
            we verify the server's TLS certificate, or a string, in which case it
            must be a path to a CA bundle to use
        :param cert: (optional) Any user-provided SSL certificate to be trusted.
        :param proxies: (optional) The proxies dictionary to apply to the request.
        :rtype: requests.Response
        """
    
        try:
            conn = self.get_connection(request.url, proxies)
        except LocationValueError as e:
            raise InvalidURL(e, request=request)
    
        self.cert_verify(conn, request.url, verify, cert)
        url = self.request_url(request, proxies)
        self.add_headers(request, stream=stream, timeout=timeout, verify=verify, cert=cert, proxies=proxies)
    
        chunked = not (request.body is None or 'Content-Length' in request.headers)
    
        if isinstance(timeout, tuple):
            try:
                connect, read = timeout
                timeout = TimeoutSauce(connect=connect, read=read)
            except ValueError as e:
                # this may raise a string formatting error.
                err = ("Invalid timeout {}. Pass a (connect, read) "
                       "timeout tuple, or a single float to set "
                       "both timeouts to the same value".format(timeout))
                raise ValueError(err)
        elif isinstance(timeout, TimeoutSauce):
            pass
        else:
            timeout = TimeoutSauce(connect=timeout, read=timeout)
    
        try:
            if not chunked:
                resp = conn.urlopen(
                    method=request.method,
                    url=url,
                    body=request.body,
                    headers=request.headers,
                    redirect=False,
                    assert_same_host=False,
                    preload_content=False,
                    decode_content=False,
                    retries=self.max_retries,
                    timeout=timeout
                )
    
            # Send the request.
            else:
                if hasattr(conn, 'proxy_pool'):
                    conn = conn.proxy_pool
    
                low_conn = conn._get_conn(timeout=DEFAULT_POOL_TIMEOUT)
    
                try:
                    low_conn.putrequest(request.method,
                                        url,
                                        skip_accept_encoding=True)
    
                    for header, value in request.headers.items():
                        low_conn.putheader(header, value)
    
                    low_conn.endheaders()
    
                    for i in request.body:
                        low_conn.send(hex(len(i))[2:].encode('utf-8'))
                        low_conn.send(b'\r\n')
                        low_conn.send(i)
                        low_conn.send(b'\r\n')
                    low_conn.send(b'0\r\n\r\n')
    
                    # Receive the response from the server
                    try:
                        # For Python 2.7, use buffering of HTTP responses
                        r = low_conn.getresponse(buffering=True)
                    except TypeError:
                        # For compatibility with Python 3.3+
                        r = low_conn.getresponse()
    
                    resp = HTTPResponse.from_httplib(
                        r,
                        pool=conn,
                        connection=low_conn,
                        preload_content=False,
                        decode_content=False
                    )
                except:
                    # If we hit any problems here, clean up the connection.
                    # Then, reraise so that we can handle the actual exception.
                    low_conn.close()
                    raise
    
        except (ProtocolError, socket.error) as err:
            raise ConnectionError(err, request=request)
    
        except MaxRetryError as e:
            if isinstance(e.reason, ConnectTimeoutError):
                # TODO: Remove this in 3.0.0: see #2811
                if not isinstance(e.reason, NewConnectionError):
                    raise ConnectTimeout(e, request=request)
    
            if isinstance(e.reason, ResponseError):
                raise RetryError(e, request=request)
    
            if isinstance(e.reason, _ProxyError):
                raise ProxyError(e, request=request)
    
            if isinstance(e.reason, _SSLError):
                # This branch is for urllib3 v1.22 and later.
                raise SSLError(e, request=request)
    
>           raise ConnectionError(e, request=request)
E           requests.exceptions.ConnectionError: HTTPSConnectionPool(host='scicrunch.org', port=443): Max retries exceeded with url: /api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7f754aa4adf0>: Failed to establish a new connection: [Errno 110] Connection timed out'))

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/adapters.py:516: ConnectionError
----------------------------- Captured stdout call -----------------------------

_____________________________ test_scicrunch_keys ______________________________

self = <urllib3.connection.HTTPSConnection object at 0x7f754aab7100>

    def _new_conn(self):
        """Establish a socket connection and set nodelay settings on it.
    
        :return: New socket connection.
        """
        extra_kw = {}
        if self.source_address:
            extra_kw["source_address"] = self.source_address
    
        if self.socket_options:
            extra_kw["socket_options"] = self.socket_options
    
        try:
>           conn = connection.create_connection(
                (self._dns_host, self.port), self.timeout, **extra_kw
            )

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connection.py:169: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

address = ('scicrunch.org', 443), timeout = None, source_address = None
socket_options = [(6, 1, 1)]

    def create_connection(
        address,
        timeout=socket._GLOBAL_DEFAULT_TIMEOUT,
        source_address=None,
        socket_options=None,
    ):
        """Connect to *address* and return the socket object.
    
        Convenience function.  Connect to *address* (a 2-tuple ``(host,
        port)``) and return the socket object.  Passing the optional
        *timeout* parameter will set the timeout on the socket instance
        before attempting to connect.  If no *timeout* is supplied, the
        global default timeout setting returned by :func:`socket.getdefaulttimeout`
        is used.  If *source_address* is set it must be a tuple of (host, port)
        for the socket to bind as a source address before making the connection.
        An host of '' or port 0 tells the OS to use the default.
        """
    
        host, port = address
        if host.startswith("["):
            host = host.strip("[]")
        err = None
    
        # Using the value from allowed_gai_family() in the context of getaddrinfo lets
        # us select whether to work with IPv4 DNS records, IPv6 records, or both.
        # The original create_connection function always returns all records.
        family = allowed_gai_family()
    
        try:
            host.encode("idna")
        except UnicodeError:
            return six.raise_from(
                LocationParseError(u"'%s', label empty or too long" % host), None
            )
    
        for res in socket.getaddrinfo(host, port, family, socket.SOCK_STREAM):
            af, socktype, proto, canonname, sa = res
            sock = None
            try:
                sock = socket.socket(af, socktype, proto)
    
                # If provided, set socket level options before connecting.
                _set_socket_options(sock, socket_options)
    
                if timeout is not socket._GLOBAL_DEFAULT_TIMEOUT:
                    sock.settimeout(timeout)
                if source_address:
                    sock.bind(source_address)
                sock.connect(sa)
                return sock
    
            except socket.error as e:
                err = e
                if sock is not None:
                    sock.close()
                    sock = None
    
        if err is not None:
>           raise err

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/util/connection.py:96: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

address = ('scicrunch.org', 443), timeout = None, source_address = None
socket_options = [(6, 1, 1)]

    def create_connection(
        address,
        timeout=socket._GLOBAL_DEFAULT_TIMEOUT,
        source_address=None,
        socket_options=None,
    ):
        """Connect to *address* and return the socket object.
    
        Convenience function.  Connect to *address* (a 2-tuple ``(host,
        port)``) and return the socket object.  Passing the optional
        *timeout* parameter will set the timeout on the socket instance
        before attempting to connect.  If no *timeout* is supplied, the
        global default timeout setting returned by :func:`socket.getdefaulttimeout`
        is used.  If *source_address* is set it must be a tuple of (host, port)
        for the socket to bind as a source address before making the connection.
        An host of '' or port 0 tells the OS to use the default.
        """
    
        host, port = address
        if host.startswith("["):
            host = host.strip("[]")
        err = None
    
        # Using the value from allowed_gai_family() in the context of getaddrinfo lets
        # us select whether to work with IPv4 DNS records, IPv6 records, or both.
        # The original create_connection function always returns all records.
        family = allowed_gai_family()
    
        try:
            host.encode("idna")
        except UnicodeError:
            return six.raise_from(
                LocationParseError(u"'%s', label empty or too long" % host), None
            )
    
        for res in socket.getaddrinfo(host, port, family, socket.SOCK_STREAM):
            af, socktype, proto, canonname, sa = res
            sock = None
            try:
                sock = socket.socket(af, socktype, proto)
    
                # If provided, set socket level options before connecting.
                _set_socket_options(sock, socket_options)
    
                if timeout is not socket._GLOBAL_DEFAULT_TIMEOUT:
                    sock.settimeout(timeout)
                if source_address:
                    sock.bind(source_address)
>               sock.connect(sa)
E               TimeoutError: [Errno 110] Connection timed out

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/util/connection.py:86: TimeoutError

During handling of the above exception, another exception occurred:

self = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754abb1a30>
method = 'GET'
url = '/api/1/elastic/SPARC_PortalDatasets_dev/_search?q=&size=10&from=0&api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf'
body = None
headers = {'User-Agent': 'python-requests/2.25.1', 'Accept-Encoding': 'gzip, deflate', 'Accept': '*/*', 'Connection': 'keep-alive'}
retries = Retry(total=0, connect=None, read=False, redirect=None, status=None)
redirect = False, assert_same_host = False
timeout = Timeout(connect=None, read=None, total=None), pool_timeout = None
release_conn = False, chunked = False, body_pos = None
response_kw = {'decode_content': False, 'preload_content': False}
parsed_url = Url(scheme=None, auth=None, host=None, port=None, path='/api/1/elastic/SPARC_PortalDatasets_dev/_search', query='q=&size=10&from=0&api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf', fragment=None)
destination_scheme = None, conn = None, release_this_conn = True
http_tunnel_required = False, err = None, clean_exit = False

    def urlopen(
        self,
        method,
        url,
        body=None,
        headers=None,
        retries=None,
        redirect=True,
        assert_same_host=True,
        timeout=_Default,
        pool_timeout=None,
        release_conn=None,
        chunked=False,
        body_pos=None,
        **response_kw
    ):
        """
        Get a connection from the pool and perform an HTTP request. This is the
        lowest level call for making a request, so you'll need to specify all
        the raw details.
    
        .. note::
    
           More commonly, it's appropriate to use a convenience method provided
           by :class:`.RequestMethods`, such as :meth:`request`.
    
        .. note::
    
           `release_conn` will only behave as expected if
           `preload_content=False` because we want to make
           `preload_content=False` the default behaviour someday soon without
           breaking backwards compatibility.
    
        :param method:
            HTTP request method (such as GET, POST, PUT, etc.)
    
        :param url:
            The URL to perform the request on.
    
        :param body:
            Data to send in the request body, either :class:`str`, :class:`bytes`,
            an iterable of :class:`str`/:class:`bytes`, or a file-like object.
    
        :param headers:
            Dictionary of custom headers to send, such as User-Agent,
            If-None-Match, etc. If None, pool headers are used. If provided,
            these headers completely replace any pool-specific headers.
    
        :param retries:
            Configure the number of retries to allow before raising a
            :class:`~urllib3.exceptions.MaxRetryError` exception.
    
            Pass ``None`` to retry until you receive a response. Pass a
            :class:`~urllib3.util.retry.Retry` object for fine-grained control
            over different types of retries.
            Pass an integer number to retry connection errors that many times,
            but no other types of errors. Pass zero to never retry.
    
            If ``False``, then retries are disabled and any exception is raised
            immediately. Also, instead of raising a MaxRetryError on redirects,
            the redirect response will be returned.
    
        :type retries: :class:`~urllib3.util.retry.Retry`, False, or an int.
    
        :param redirect:
            If True, automatically handle redirects (status codes 301, 302,
            303, 307, 308). Each redirect counts as a retry. Disabling retries
            will disable redirect, too.
    
        :param assert_same_host:
            If ``True``, will make sure that the host of the pool requests is
            consistent else will raise HostChangedError. When ``False``, you can
            use the pool on an HTTP proxy and request foreign hosts.
    
        :param timeout:
            If specified, overrides the default timeout for this one
            request. It may be a float (in seconds) or an instance of
            :class:`urllib3.util.Timeout`.
    
        :param pool_timeout:
            If set and the pool is set to block=True, then this method will
            block for ``pool_timeout`` seconds and raise EmptyPoolError if no
            connection is available within the time period.
    
        :param release_conn:
            If False, then the urlopen call will not release the connection
            back into the pool once a response is received (but will release if
            you read the entire contents of the response such as when
            `preload_content=True`). This is useful if you're not preloading
            the response's content immediately. You will need to call
            ``r.release_conn()`` on the response ``r`` to return the connection
            back into the pool. If None, it takes the value of
            ``response_kw.get('preload_content', True)``.
    
        :param chunked:
            If True, urllib3 will send the body using chunked transfer
            encoding. Otherwise, urllib3 will send the body using the standard
            content-length form. Defaults to False.
    
        :param int body_pos:
            Position to seek to in file-like body in the event of a retry or
            redirect. Typically this won't need to be set because urllib3 will
            auto-populate the value when needed.
    
        :param \\**response_kw:
            Additional parameters are passed to
            :meth:`urllib3.response.HTTPResponse.from_httplib`
        """
    
        parsed_url = parse_url(url)
        destination_scheme = parsed_url.scheme
    
        if headers is None:
            headers = self.headers
    
        if not isinstance(retries, Retry):
            retries = Retry.from_int(retries, redirect=redirect, default=self.retries)
    
        if release_conn is None:
            release_conn = response_kw.get("preload_content", True)
    
        # Check host
        if assert_same_host and not self.is_same_host(url):
            raise HostChangedError(self, url, retries)
    
        # Ensure that the URL we're connecting to is properly encoded
        if url.startswith("/"):
            url = six.ensure_str(_encode_target(url))
        else:
            url = six.ensure_str(parsed_url.url)
    
        conn = None
    
        # Track whether `conn` needs to be released before
        # returning/raising/recursing. Update this variable if necessary, and
        # leave `release_conn` constant throughout the function. That way, if
        # the function recurses, the original value of `release_conn` will be
        # passed down into the recursive call, and its value will be respected.
        #
        # See issue #651 [1] for details.
        #
        # [1] <https://github.com/urllib3/urllib3/issues/651>
        release_this_conn = release_conn
    
        http_tunnel_required = connection_requires_http_tunnel(
            self.proxy, self.proxy_config, destination_scheme
        )
    
        # Merge the proxy headers. Only done when not using HTTP CONNECT. We
        # have to copy the headers dict so we can safely change it without those
        # changes being reflected in anyone else's copy.
        if not http_tunnel_required:
            headers = headers.copy()
            headers.update(self.proxy_headers)
    
        # Must keep the exception bound to a separate variable or else Python 3
        # complains about UnboundLocalError.
        err = None
    
        # Keep track of whether we cleanly exited the except block. This
        # ensures we do proper cleanup in finally.
        clean_exit = False
    
        # Rewind body position, if needed. Record current position
        # for future rewinds in the event of a redirect/retry.
        body_pos = set_file_position(body, body_pos)
    
        try:
            # Request a connection from the queue.
            timeout_obj = self._get_timeout(timeout)
            conn = self._get_conn(timeout=pool_timeout)
    
            conn.timeout = timeout_obj.connect_timeout
    
            is_new_proxy_conn = self.proxy is not None and not getattr(
                conn, "sock", None
            )
            if is_new_proxy_conn and http_tunnel_required:
                self._prepare_proxy(conn)
    
            # Make the request on the httplib connection object.
>           httplib_response = self._make_request(
                conn,
                method,
                url,
                timeout=timeout_obj,
                body=body,
                headers=headers,
                chunked=chunked,
            )

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py:699: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754abb1a30>
conn = <urllib3.connection.HTTPSConnection object at 0x7f754aab7100>
method = 'GET'
url = '/api/1/elastic/SPARC_PortalDatasets_dev/_search?q=&size=10&from=0&api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf'
timeout = Timeout(connect=None, read=None, total=None), chunked = False
httplib_request_kw = {'body': None, 'headers': {'User-Agent': 'python-requests/2.25.1', 'Accept-Encoding': 'gzip, deflate', 'Accept': '*/*', 'Connection': 'keep-alive'}}
timeout_obj = Timeout(connect=None, read=None, total=None)

    def _make_request(
        self, conn, method, url, timeout=_Default, chunked=False, **httplib_request_kw
    ):
        """
        Perform a request on a given urllib connection object taken from our
        pool.
    
        :param conn:
            a connection from one of our connection pools
    
        :param timeout:
            Socket timeout in seconds for the request. This can be a
            float or integer, which will set the same timeout value for
            the socket connect and the socket read, or an instance of
            :class:`urllib3.util.Timeout`, which gives you more fine-grained
            control over your timeouts.
        """
        self.num_requests += 1
    
        timeout_obj = self._get_timeout(timeout)
        timeout_obj.start_connect()
        conn.timeout = timeout_obj.connect_timeout
    
        # Trigger any extra validation we need to do.
        try:
>           self._validate_conn(conn)

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py:382: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754abb1a30>
conn = <urllib3.connection.HTTPSConnection object at 0x7f754aab7100>

    def _validate_conn(self, conn):
        """
        Called right before a request is made, after the socket is created.
        """
        super(HTTPSConnectionPool, self)._validate_conn(conn)
    
        # Force connect early to allow us to validate the connection.
        if not getattr(conn, "sock", None):  # AppEngine might not have  `.sock`
>           conn.connect()

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py:1010: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connection.HTTPSConnection object at 0x7f754aab7100>

    def connect(self):
        # Add certificate verification
>       conn = self._new_conn()

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connection.py:353: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connection.HTTPSConnection object at 0x7f754aab7100>

    def _new_conn(self):
        """Establish a socket connection and set nodelay settings on it.
    
        :return: New socket connection.
        """
        extra_kw = {}
        if self.source_address:
            extra_kw["source_address"] = self.source_address
    
        if self.socket_options:
            extra_kw["socket_options"] = self.socket_options
    
        try:
            conn = connection.create_connection(
                (self._dns_host, self.port), self.timeout, **extra_kw
            )
    
        except SocketTimeout:
            raise ConnectTimeoutError(
                self,
                "Connection to %s timed out. (connect timeout=%s)"
                % (self.host, self.timeout),
            )
    
        except SocketError as e:
>           raise NewConnectionError(
                self, "Failed to establish a new connection: %s" % e
            )
E           urllib3.exceptions.NewConnectionError: <urllib3.connection.HTTPSConnection object at 0x7f754aab7100>: Failed to establish a new connection: [Errno 110] Connection timed out

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connection.py:181: NewConnectionError

During handling of the above exception, another exception occurred:

self = <requests.adapters.HTTPAdapter object at 0x7f754abb1dc0>
request = <PreparedRequest [GET]>, stream = False
timeout = Timeout(connect=None, read=None, total=None), verify = True
cert = None, proxies = OrderedDict()

    def send(self, request, stream=False, timeout=None, verify=True, cert=None, proxies=None):
        """Sends PreparedRequest object. Returns Response object.
    
        :param request: The :class:`PreparedRequest <PreparedRequest>` being sent.
        :param stream: (optional) Whether to stream the request content.
        :param timeout: (optional) How long to wait for the server to send
            data before giving up, as a float, or a :ref:`(connect timeout,
            read timeout) <timeouts>` tuple.
        :type timeout: float or tuple or urllib3 Timeout object
        :param verify: (optional) Either a boolean, in which case it controls whether
            we verify the server's TLS certificate, or a string, in which case it
            must be a path to a CA bundle to use
        :param cert: (optional) Any user-provided SSL certificate to be trusted.
        :param proxies: (optional) The proxies dictionary to apply to the request.
        :rtype: requests.Response
        """
    
        try:
            conn = self.get_connection(request.url, proxies)
        except LocationValueError as e:
            raise InvalidURL(e, request=request)
    
        self.cert_verify(conn, request.url, verify, cert)
        url = self.request_url(request, proxies)
        self.add_headers(request, stream=stream, timeout=timeout, verify=verify, cert=cert, proxies=proxies)
    
        chunked = not (request.body is None or 'Content-Length' in request.headers)
    
        if isinstance(timeout, tuple):
            try:
                connect, read = timeout
                timeout = TimeoutSauce(connect=connect, read=read)
            except ValueError as e:
                # this may raise a string formatting error.
                err = ("Invalid timeout {}. Pass a (connect, read) "
                       "timeout tuple, or a single float to set "
                       "both timeouts to the same value".format(timeout))
                raise ValueError(err)
        elif isinstance(timeout, TimeoutSauce):
            pass
        else:
            timeout = TimeoutSauce(connect=timeout, read=timeout)
    
        try:
            if not chunked:
>               resp = conn.urlopen(
                    method=request.method,
                    url=url,
                    body=request.body,
                    headers=request.headers,
                    redirect=False,
                    assert_same_host=False,
                    preload_content=False,
                    decode_content=False,
                    retries=self.max_retries,
                    timeout=timeout
                )

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/adapters.py:439: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754abb1a30>
method = 'GET'
url = '/api/1/elastic/SPARC_PortalDatasets_dev/_search?q=&size=10&from=0&api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf'
body = None
headers = {'User-Agent': 'python-requests/2.25.1', 'Accept-Encoding': 'gzip, deflate', 'Accept': '*/*', 'Connection': 'keep-alive'}
retries = Retry(total=0, connect=None, read=False, redirect=None, status=None)
redirect = False, assert_same_host = False
timeout = Timeout(connect=None, read=None, total=None), pool_timeout = None
release_conn = False, chunked = False, body_pos = None
response_kw = {'decode_content': False, 'preload_content': False}
parsed_url = Url(scheme=None, auth=None, host=None, port=None, path='/api/1/elastic/SPARC_PortalDatasets_dev/_search', query='q=&size=10&from=0&api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf', fragment=None)
destination_scheme = None, conn = None, release_this_conn = True
http_tunnel_required = False, err = None, clean_exit = False

    def urlopen(
        self,
        method,
        url,
        body=None,
        headers=None,
        retries=None,
        redirect=True,
        assert_same_host=True,
        timeout=_Default,
        pool_timeout=None,
        release_conn=None,
        chunked=False,
        body_pos=None,
        **response_kw
    ):
        """
        Get a connection from the pool and perform an HTTP request. This is the
        lowest level call for making a request, so you'll need to specify all
        the raw details.
    
        .. note::
    
           More commonly, it's appropriate to use a convenience method provided
           by :class:`.RequestMethods`, such as :meth:`request`.
    
        .. note::
    
           `release_conn` will only behave as expected if
           `preload_content=False` because we want to make
           `preload_content=False` the default behaviour someday soon without
           breaking backwards compatibility.
    
        :param method:
            HTTP request method (such as GET, POST, PUT, etc.)
    
        :param url:
            The URL to perform the request on.
    
        :param body:
            Data to send in the request body, either :class:`str`, :class:`bytes`,
            an iterable of :class:`str`/:class:`bytes`, or a file-like object.
    
        :param headers:
            Dictionary of custom headers to send, such as User-Agent,
            If-None-Match, etc. If None, pool headers are used. If provided,
            these headers completely replace any pool-specific headers.
    
        :param retries:
            Configure the number of retries to allow before raising a
            :class:`~urllib3.exceptions.MaxRetryError` exception.
    
            Pass ``None`` to retry until you receive a response. Pass a
            :class:`~urllib3.util.retry.Retry` object for fine-grained control
            over different types of retries.
            Pass an integer number to retry connection errors that many times,
            but no other types of errors. Pass zero to never retry.
    
            If ``False``, then retries are disabled and any exception is raised
            immediately. Also, instead of raising a MaxRetryError on redirects,
            the redirect response will be returned.
    
        :type retries: :class:`~urllib3.util.retry.Retry`, False, or an int.
    
        :param redirect:
            If True, automatically handle redirects (status codes 301, 302,
            303, 307, 308). Each redirect counts as a retry. Disabling retries
            will disable redirect, too.
    
        :param assert_same_host:
            If ``True``, will make sure that the host of the pool requests is
            consistent else will raise HostChangedError. When ``False``, you can
            use the pool on an HTTP proxy and request foreign hosts.
    
        :param timeout:
            If specified, overrides the default timeout for this one
            request. It may be a float (in seconds) or an instance of
            :class:`urllib3.util.Timeout`.
    
        :param pool_timeout:
            If set and the pool is set to block=True, then this method will
            block for ``pool_timeout`` seconds and raise EmptyPoolError if no
            connection is available within the time period.
    
        :param release_conn:
            If False, then the urlopen call will not release the connection
            back into the pool once a response is received (but will release if
            you read the entire contents of the response such as when
            `preload_content=True`). This is useful if you're not preloading
            the response's content immediately. You will need to call
            ``r.release_conn()`` on the response ``r`` to return the connection
            back into the pool. If None, it takes the value of
            ``response_kw.get('preload_content', True)``.
    
        :param chunked:
            If True, urllib3 will send the body using chunked transfer
            encoding. Otherwise, urllib3 will send the body using the standard
            content-length form. Defaults to False.
    
        :param int body_pos:
            Position to seek to in file-like body in the event of a retry or
            redirect. Typically this won't need to be set because urllib3 will
            auto-populate the value when needed.
    
        :param \\**response_kw:
            Additional parameters are passed to
            :meth:`urllib3.response.HTTPResponse.from_httplib`
        """
    
        parsed_url = parse_url(url)
        destination_scheme = parsed_url.scheme
    
        if headers is None:
            headers = self.headers
    
        if not isinstance(retries, Retry):
            retries = Retry.from_int(retries, redirect=redirect, default=self.retries)
    
        if release_conn is None:
            release_conn = response_kw.get("preload_content", True)
    
        # Check host
        if assert_same_host and not self.is_same_host(url):
            raise HostChangedError(self, url, retries)
    
        # Ensure that the URL we're connecting to is properly encoded
        if url.startswith("/"):
            url = six.ensure_str(_encode_target(url))
        else:
            url = six.ensure_str(parsed_url.url)
    
        conn = None
    
        # Track whether `conn` needs to be released before
        # returning/raising/recursing. Update this variable if necessary, and
        # leave `release_conn` constant throughout the function. That way, if
        # the function recurses, the original value of `release_conn` will be
        # passed down into the recursive call, and its value will be respected.
        #
        # See issue #651 [1] for details.
        #
        # [1] <https://github.com/urllib3/urllib3/issues/651>
        release_this_conn = release_conn
    
        http_tunnel_required = connection_requires_http_tunnel(
            self.proxy, self.proxy_config, destination_scheme
        )
    
        # Merge the proxy headers. Only done when not using HTTP CONNECT. We
        # have to copy the headers dict so we can safely change it without those
        # changes being reflected in anyone else's copy.
        if not http_tunnel_required:
            headers = headers.copy()
            headers.update(self.proxy_headers)
    
        # Must keep the exception bound to a separate variable or else Python 3
        # complains about UnboundLocalError.
        err = None
    
        # Keep track of whether we cleanly exited the except block. This
        # ensures we do proper cleanup in finally.
        clean_exit = False
    
        # Rewind body position, if needed. Record current position
        # for future rewinds in the event of a redirect/retry.
        body_pos = set_file_position(body, body_pos)
    
        try:
            # Request a connection from the queue.
            timeout_obj = self._get_timeout(timeout)
            conn = self._get_conn(timeout=pool_timeout)
    
            conn.timeout = timeout_obj.connect_timeout
    
            is_new_proxy_conn = self.proxy is not None and not getattr(
                conn, "sock", None
            )
            if is_new_proxy_conn and http_tunnel_required:
                self._prepare_proxy(conn)
    
            # Make the request on the httplib connection object.
            httplib_response = self._make_request(
                conn,
                method,
                url,
                timeout=timeout_obj,
                body=body,
                headers=headers,
                chunked=chunked,
            )
    
            # If we're going to release the connection in ``finally:``, then
            # the response doesn't need to know about the connection. Otherwise
            # it will also try to release it and we'll have a double-release
            # mess.
            response_conn = conn if not release_conn else None
    
            # Pass method to Response for length checking
            response_kw["request_method"] = method
    
            # Import httplib's response into our own wrapper object
            response = self.ResponseCls.from_httplib(
                httplib_response,
                pool=self,
                connection=response_conn,
                retries=retries,
                **response_kw
            )
    
            # Everything went great!
            clean_exit = True
    
        except EmptyPoolError:
            # Didn't get a connection from the pool, no need to clean up
            clean_exit = True
            release_this_conn = False
            raise
    
        except (
            TimeoutError,
            HTTPException,
            SocketError,
            ProtocolError,
            BaseSSLError,
            SSLError,
            CertificateError,
        ) as e:
            # Discard the connection for these exceptions. It will be
            # replaced during the next _get_conn() call.
            clean_exit = False
            if isinstance(e, (BaseSSLError, CertificateError)):
                e = SSLError(e)
            elif isinstance(e, (SocketError, NewConnectionError)) and self.proxy:
                e = ProxyError("Cannot connect to proxy.", e)
            elif isinstance(e, (SocketError, HTTPException)):
                e = ProtocolError("Connection aborted.", e)
    
>           retries = retries.increment(
                method, url, error=e, _pool=self, _stacktrace=sys.exc_info()[2]
            )

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py:755: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = Retry(total=0, connect=None, read=False, redirect=None, status=None)
method = 'GET'
url = '/api/1/elastic/SPARC_PortalDatasets_dev/_search?q=&size=10&from=0&api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf'
response = None
error = NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7f754aab7100>: Failed to establish a new connection: [Errno 110] Connection timed out')
_pool = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754abb1a30>
_stacktrace = <traceback object at 0x7f754ac70800>

    def increment(
        self,
        method=None,
        url=None,
        response=None,
        error=None,
        _pool=None,
        _stacktrace=None,
    ):
        """Return a new Retry object with incremented retry counters.
    
        :param response: A response object, or None, if the server did not
            return a response.
        :type response: :class:`~urllib3.response.HTTPResponse`
        :param Exception error: An error encountered during the request, or
            None if the response was received successfully.
    
        :return: A new ``Retry`` object.
        """
        if self.total is False and error:
            # Disabled, indicate to re-raise the error.
            raise six.reraise(type(error), error, _stacktrace)
    
        total = self.total
        if total is not None:
            total -= 1
    
        connect = self.connect
        read = self.read
        redirect = self.redirect
        status_count = self.status
        other = self.other
        cause = "unknown"
        status = None
        redirect_location = None
    
        if error and self._is_connection_error(error):
            # Connect retry?
            if connect is False:
                raise six.reraise(type(error), error, _stacktrace)
            elif connect is not None:
                connect -= 1
    
        elif error and self._is_read_error(error):
            # Read retry?
            if read is False or not self._is_method_retryable(method):
                raise six.reraise(type(error), error, _stacktrace)
            elif read is not None:
                read -= 1
    
        elif error:
            # Other retry?
            if other is not None:
                other -= 1
    
        elif response and response.get_redirect_location():
            # Redirect retry?
            if redirect is not None:
                redirect -= 1
            cause = "too many redirects"
            redirect_location = response.get_redirect_location()
            status = response.status
    
        else:
            # Incrementing because of a server error like a 500 in
            # status_forcelist and the given method is in the allowed_methods
            cause = ResponseError.GENERIC_ERROR
            if response and response.status:
                if status_count is not None:
                    status_count -= 1
                cause = ResponseError.SPECIFIC_ERROR.format(status_code=response.status)
                status = response.status
    
        history = self.history + (
            RequestHistory(method, url, error, status, redirect_location),
        )
    
        new_retry = self.new(
            total=total,
            connect=connect,
            read=read,
            redirect=redirect,
            status=status_count,
            other=other,
            history=history,
        )
    
        if new_retry.is_exhausted():
>           raise MaxRetryError(_pool, url, error or ResponseError(cause))
E           urllib3.exceptions.MaxRetryError: HTTPSConnectionPool(host='scicrunch.org', port=443): Max retries exceeded with url: /api/1/elastic/SPARC_PortalDatasets_dev/_search?q=&size=10&from=0&api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7f754aab7100>: Failed to establish a new connection: [Errno 110] Connection timed out'))

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/util/retry.py:574: MaxRetryError

During handling of the above exception, another exception occurred:

client = <FlaskClient <Flask 'app.main'>>

    def test_scicrunch_keys(client):
>       r = client.get('/search/')

tests/test_scicrunch.py:26: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/werkzeug/test.py:1029: in get
    return self.open(*args, **kw)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/testing.py:222: in open
    return Client.open(
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/werkzeug/test.py:993: in open
    response = self.run_wsgi_app(environ.copy(), buffered=buffered)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/werkzeug/test.py:884: in run_wsgi_app
    rv = run_wsgi_app(self.application, environ, buffered=buffered)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/werkzeug/test.py:1119: in run_wsgi_app
    app_rv = app(environ, start_response)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:2463: in __call__
    return self.wsgi_app(environ, start_response)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:2449: in wsgi_app
    response = self.handle_exception(e)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask_cors/extension.py:161: in wrapped_function
    return cors_after_request(app.make_response(f(*args, **kwargs)))
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1866: in handle_exception
    reraise(exc_type, exc_value, tb)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/_compat.py:39: in reraise
    raise value
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:2446: in wsgi_app
    response = self.full_dispatch_request()
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1951: in full_dispatch_request
    rv = self.handle_user_exception(e)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask_cors/extension.py:161: in wrapped_function
    return cors_after_request(app.make_response(f(*args, **kwargs)))
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1820: in handle_user_exception
    reraise(exc_type, exc_value, tb)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/_compat.py:39: in reraise
    raise value
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1949: in full_dispatch_request
    rv = self.dispatch_request()
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1935: in dispatch_request
    return self.view_functions[rule.endpoint](**req.view_args)
app/main.py:686: in kb_search
    response = requests.get(f'{Config.SCI_CRUNCH_HOST}/_search?q={query}&size={limit}&from={start}&api_key={Config.KNOWLEDGEBASE_KEY}')
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/api.py:76: in get
    return request('get', url, params=params, **kwargs)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/api.py:61: in request
    return session.request(method=method, url=url, **kwargs)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/sessions.py:542: in request
    resp = self.send(prep, **send_kwargs)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/sessions.py:655: in send
    r = adapter.send(request, **kwargs)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <requests.adapters.HTTPAdapter object at 0x7f754abb1dc0>
request = <PreparedRequest [GET]>, stream = False
timeout = Timeout(connect=None, read=None, total=None), verify = True
cert = None, proxies = OrderedDict()

    def send(self, request, stream=False, timeout=None, verify=True, cert=None, proxies=None):
        """Sends PreparedRequest object. Returns Response object.
    
        :param request: The :class:`PreparedRequest <PreparedRequest>` being sent.
        :param stream: (optional) Whether to stream the request content.
        :param timeout: (optional) How long to wait for the server to send
            data before giving up, as a float, or a :ref:`(connect timeout,
            read timeout) <timeouts>` tuple.
        :type timeout: float or tuple or urllib3 Timeout object
        :param verify: (optional) Either a boolean, in which case it controls whether
            we verify the server's TLS certificate, or a string, in which case it
            must be a path to a CA bundle to use
        :param cert: (optional) Any user-provided SSL certificate to be trusted.
        :param proxies: (optional) The proxies dictionary to apply to the request.
        :rtype: requests.Response
        """
    
        try:
            conn = self.get_connection(request.url, proxies)
        except LocationValueError as e:
            raise InvalidURL(e, request=request)
    
        self.cert_verify(conn, request.url, verify, cert)
        url = self.request_url(request, proxies)
        self.add_headers(request, stream=stream, timeout=timeout, verify=verify, cert=cert, proxies=proxies)
    
        chunked = not (request.body is None or 'Content-Length' in request.headers)
    
        if isinstance(timeout, tuple):
            try:
                connect, read = timeout
                timeout = TimeoutSauce(connect=connect, read=read)
            except ValueError as e:
                # this may raise a string formatting error.
                err = ("Invalid timeout {}. Pass a (connect, read) "
                       "timeout tuple, or a single float to set "
                       "both timeouts to the same value".format(timeout))
                raise ValueError(err)
        elif isinstance(timeout, TimeoutSauce):
            pass
        else:
            timeout = TimeoutSauce(connect=timeout, read=timeout)
    
        try:
            if not chunked:
                resp = conn.urlopen(
                    method=request.method,
                    url=url,
                    body=request.body,
                    headers=request.headers,
                    redirect=False,
                    assert_same_host=False,
                    preload_content=False,
                    decode_content=False,
                    retries=self.max_retries,
                    timeout=timeout
                )
    
            # Send the request.
            else:
                if hasattr(conn, 'proxy_pool'):
                    conn = conn.proxy_pool
    
                low_conn = conn._get_conn(timeout=DEFAULT_POOL_TIMEOUT)
    
                try:
                    low_conn.putrequest(request.method,
                                        url,
                                        skip_accept_encoding=True)
    
                    for header, value in request.headers.items():
                        low_conn.putheader(header, value)
    
                    low_conn.endheaders()
    
                    for i in request.body:
                        low_conn.send(hex(len(i))[2:].encode('utf-8'))
                        low_conn.send(b'\r\n')
                        low_conn.send(i)
                        low_conn.send(b'\r\n')
                    low_conn.send(b'0\r\n\r\n')
    
                    # Receive the response from the server
                    try:
                        # For Python 2.7, use buffering of HTTP responses
                        r = low_conn.getresponse(buffering=True)
                    except TypeError:
                        # For compatibility with Python 3.3+
                        r = low_conn.getresponse()
    
                    resp = HTTPResponse.from_httplib(
                        r,
                        pool=conn,
                        connection=low_conn,
                        preload_content=False,
                        decode_content=False
                    )
                except:
                    # If we hit any problems here, clean up the connection.
                    # Then, reraise so that we can handle the actual exception.
                    low_conn.close()
                    raise
    
        except (ProtocolError, socket.error) as err:
            raise ConnectionError(err, request=request)
    
        except MaxRetryError as e:
            if isinstance(e.reason, ConnectTimeoutError):
                # TODO: Remove this in 3.0.0: see #2811
                if not isinstance(e.reason, NewConnectionError):
                    raise ConnectTimeout(e, request=request)
    
            if isinstance(e.reason, ResponseError):
                raise RetryError(e, request=request)
    
            if isinstance(e.reason, _ProxyError):
                raise ProxyError(e, request=request)
    
            if isinstance(e.reason, _SSLError):
                # This branch is for urllib3 v1.22 and later.
                raise SSLError(e, request=request)
    
>           raise ConnectionError(e, request=request)
E           requests.exceptions.ConnectionError: HTTPSConnectionPool(host='scicrunch.org', port=443): Max retries exceeded with url: /api/1/elastic/SPARC_PortalDatasets_dev/_search?q=&size=10&from=0&api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7f754aab7100>: Failed to establish a new connection: [Errno 110] Connection timed out'))

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/adapters.py:516: ConnectionError
____________________ test_scicrunch_versions_are_supported _____________________

self = <urllib3.connection.HTTPSConnection object at 0x7f754a55f1f0>

    def _new_conn(self):
        """Establish a socket connection and set nodelay settings on it.
    
        :return: New socket connection.
        """
        extra_kw = {}
        if self.source_address:
            extra_kw["source_address"] = self.source_address
    
        if self.socket_options:
            extra_kw["socket_options"] = self.socket_options
    
        try:
>           conn = connection.create_connection(
                (self._dns_host, self.port), self.timeout, **extra_kw
            )

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connection.py:169: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

address = ('scicrunch.org', 443), timeout = None, source_address = None
socket_options = [(6, 1, 1)]

    def create_connection(
        address,
        timeout=socket._GLOBAL_DEFAULT_TIMEOUT,
        source_address=None,
        socket_options=None,
    ):
        """Connect to *address* and return the socket object.
    
        Convenience function.  Connect to *address* (a 2-tuple ``(host,
        port)``) and return the socket object.  Passing the optional
        *timeout* parameter will set the timeout on the socket instance
        before attempting to connect.  If no *timeout* is supplied, the
        global default timeout setting returned by :func:`socket.getdefaulttimeout`
        is used.  If *source_address* is set it must be a tuple of (host, port)
        for the socket to bind as a source address before making the connection.
        An host of '' or port 0 tells the OS to use the default.
        """
    
        host, port = address
        if host.startswith("["):
            host = host.strip("[]")
        err = None
    
        # Using the value from allowed_gai_family() in the context of getaddrinfo lets
        # us select whether to work with IPv4 DNS records, IPv6 records, or both.
        # The original create_connection function always returns all records.
        family = allowed_gai_family()
    
        try:
            host.encode("idna")
        except UnicodeError:
            return six.raise_from(
                LocationParseError(u"'%s', label empty or too long" % host), None
            )
    
        for res in socket.getaddrinfo(host, port, family, socket.SOCK_STREAM):
            af, socktype, proto, canonname, sa = res
            sock = None
            try:
                sock = socket.socket(af, socktype, proto)
    
                # If provided, set socket level options before connecting.
                _set_socket_options(sock, socket_options)
    
                if timeout is not socket._GLOBAL_DEFAULT_TIMEOUT:
                    sock.settimeout(timeout)
                if source_address:
                    sock.bind(source_address)
                sock.connect(sa)
                return sock
    
            except socket.error as e:
                err = e
                if sock is not None:
                    sock.close()
                    sock = None
    
        if err is not None:
>           raise err

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/util/connection.py:96: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

address = ('scicrunch.org', 443), timeout = None, source_address = None
socket_options = [(6, 1, 1)]

    def create_connection(
        address,
        timeout=socket._GLOBAL_DEFAULT_TIMEOUT,
        source_address=None,
        socket_options=None,
    ):
        """Connect to *address* and return the socket object.
    
        Convenience function.  Connect to *address* (a 2-tuple ``(host,
        port)``) and return the socket object.  Passing the optional
        *timeout* parameter will set the timeout on the socket instance
        before attempting to connect.  If no *timeout* is supplied, the
        global default timeout setting returned by :func:`socket.getdefaulttimeout`
        is used.  If *source_address* is set it must be a tuple of (host, port)
        for the socket to bind as a source address before making the connection.
        An host of '' or port 0 tells the OS to use the default.
        """
    
        host, port = address
        if host.startswith("["):
            host = host.strip("[]")
        err = None
    
        # Using the value from allowed_gai_family() in the context of getaddrinfo lets
        # us select whether to work with IPv4 DNS records, IPv6 records, or both.
        # The original create_connection function always returns all records.
        family = allowed_gai_family()
    
        try:
            host.encode("idna")
        except UnicodeError:
            return six.raise_from(
                LocationParseError(u"'%s', label empty or too long" % host), None
            )
    
        for res in socket.getaddrinfo(host, port, family, socket.SOCK_STREAM):
            af, socktype, proto, canonname, sa = res
            sock = None
            try:
                sock = socket.socket(af, socktype, proto)
    
                # If provided, set socket level options before connecting.
                _set_socket_options(sock, socket_options)
    
                if timeout is not socket._GLOBAL_DEFAULT_TIMEOUT:
                    sock.settimeout(timeout)
                if source_address:
                    sock.bind(source_address)
>               sock.connect(sa)
E               TimeoutError: [Errno 110] Connection timed out

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/util/connection.py:86: TimeoutError

During handling of the above exception, another exception occurred:

self = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754a55f9d0>
method = 'GET'
url = '/api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf&q=%22%22'
body = None
headers = {'User-Agent': 'python-requests/2.25.1', 'Accept-Encoding': 'gzip, deflate', 'Accept': '*/*', 'Connection': 'keep-alive'}
retries = Retry(total=0, connect=None, read=False, redirect=None, status=None)
redirect = False, assert_same_host = False
timeout = Timeout(connect=None, read=None, total=None), pool_timeout = None
release_conn = False, chunked = False, body_pos = None
response_kw = {'decode_content': False, 'preload_content': False}
parsed_url = Url(scheme=None, auth=None, host=None, port=None, path='/api/1/elastic/SPARC_PortalDatasets_dev/_search', query='api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf&q=%22%22', fragment=None)
destination_scheme = None, conn = None, release_this_conn = True
http_tunnel_required = False, err = None, clean_exit = False

    def urlopen(
        self,
        method,
        url,
        body=None,
        headers=None,
        retries=None,
        redirect=True,
        assert_same_host=True,
        timeout=_Default,
        pool_timeout=None,
        release_conn=None,
        chunked=False,
        body_pos=None,
        **response_kw
    ):
        """
        Get a connection from the pool and perform an HTTP request. This is the
        lowest level call for making a request, so you'll need to specify all
        the raw details.
    
        .. note::
    
           More commonly, it's appropriate to use a convenience method provided
           by :class:`.RequestMethods`, such as :meth:`request`.
    
        .. note::
    
           `release_conn` will only behave as expected if
           `preload_content=False` because we want to make
           `preload_content=False` the default behaviour someday soon without
           breaking backwards compatibility.
    
        :param method:
            HTTP request method (such as GET, POST, PUT, etc.)
    
        :param url:
            The URL to perform the request on.
    
        :param body:
            Data to send in the request body, either :class:`str`, :class:`bytes`,
            an iterable of :class:`str`/:class:`bytes`, or a file-like object.
    
        :param headers:
            Dictionary of custom headers to send, such as User-Agent,
            If-None-Match, etc. If None, pool headers are used. If provided,
            these headers completely replace any pool-specific headers.
    
        :param retries:
            Configure the number of retries to allow before raising a
            :class:`~urllib3.exceptions.MaxRetryError` exception.
    
            Pass ``None`` to retry until you receive a response. Pass a
            :class:`~urllib3.util.retry.Retry` object for fine-grained control
            over different types of retries.
            Pass an integer number to retry connection errors that many times,
            but no other types of errors. Pass zero to never retry.
    
            If ``False``, then retries are disabled and any exception is raised
            immediately. Also, instead of raising a MaxRetryError on redirects,
            the redirect response will be returned.
    
        :type retries: :class:`~urllib3.util.retry.Retry`, False, or an int.
    
        :param redirect:
            If True, automatically handle redirects (status codes 301, 302,
            303, 307, 308). Each redirect counts as a retry. Disabling retries
            will disable redirect, too.
    
        :param assert_same_host:
            If ``True``, will make sure that the host of the pool requests is
            consistent else will raise HostChangedError. When ``False``, you can
            use the pool on an HTTP proxy and request foreign hosts.
    
        :param timeout:
            If specified, overrides the default timeout for this one
            request. It may be a float (in seconds) or an instance of
            :class:`urllib3.util.Timeout`.
    
        :param pool_timeout:
            If set and the pool is set to block=True, then this method will
            block for ``pool_timeout`` seconds and raise EmptyPoolError if no
            connection is available within the time period.
    
        :param release_conn:
            If False, then the urlopen call will not release the connection
            back into the pool once a response is received (but will release if
            you read the entire contents of the response such as when
            `preload_content=True`). This is useful if you're not preloading
            the response's content immediately. You will need to call
            ``r.release_conn()`` on the response ``r`` to return the connection
            back into the pool. If None, it takes the value of
            ``response_kw.get('preload_content', True)``.
    
        :param chunked:
            If True, urllib3 will send the body using chunked transfer
            encoding. Otherwise, urllib3 will send the body using the standard
            content-length form. Defaults to False.
    
        :param int body_pos:
            Position to seek to in file-like body in the event of a retry or
            redirect. Typically this won't need to be set because urllib3 will
            auto-populate the value when needed.
    
        :param \\**response_kw:
            Additional parameters are passed to
            :meth:`urllib3.response.HTTPResponse.from_httplib`
        """
    
        parsed_url = parse_url(url)
        destination_scheme = parsed_url.scheme
    
        if headers is None:
            headers = self.headers
    
        if not isinstance(retries, Retry):
            retries = Retry.from_int(retries, redirect=redirect, default=self.retries)
    
        if release_conn is None:
            release_conn = response_kw.get("preload_content", True)
    
        # Check host
        if assert_same_host and not self.is_same_host(url):
            raise HostChangedError(self, url, retries)
    
        # Ensure that the URL we're connecting to is properly encoded
        if url.startswith("/"):
            url = six.ensure_str(_encode_target(url))
        else:
            url = six.ensure_str(parsed_url.url)
    
        conn = None
    
        # Track whether `conn` needs to be released before
        # returning/raising/recursing. Update this variable if necessary, and
        # leave `release_conn` constant throughout the function. That way, if
        # the function recurses, the original value of `release_conn` will be
        # passed down into the recursive call, and its value will be respected.
        #
        # See issue #651 [1] for details.
        #
        # [1] <https://github.com/urllib3/urllib3/issues/651>
        release_this_conn = release_conn
    
        http_tunnel_required = connection_requires_http_tunnel(
            self.proxy, self.proxy_config, destination_scheme
        )
    
        # Merge the proxy headers. Only done when not using HTTP CONNECT. We
        # have to copy the headers dict so we can safely change it without those
        # changes being reflected in anyone else's copy.
        if not http_tunnel_required:
            headers = headers.copy()
            headers.update(self.proxy_headers)
    
        # Must keep the exception bound to a separate variable or else Python 3
        # complains about UnboundLocalError.
        err = None
    
        # Keep track of whether we cleanly exited the except block. This
        # ensures we do proper cleanup in finally.
        clean_exit = False
    
        # Rewind body position, if needed. Record current position
        # for future rewinds in the event of a redirect/retry.
        body_pos = set_file_position(body, body_pos)
    
        try:
            # Request a connection from the queue.
            timeout_obj = self._get_timeout(timeout)
            conn = self._get_conn(timeout=pool_timeout)
    
            conn.timeout = timeout_obj.connect_timeout
    
            is_new_proxy_conn = self.proxy is not None and not getattr(
                conn, "sock", None
            )
            if is_new_proxy_conn and http_tunnel_required:
                self._prepare_proxy(conn)
    
            # Make the request on the httplib connection object.
>           httplib_response = self._make_request(
                conn,
                method,
                url,
                timeout=timeout_obj,
                body=body,
                headers=headers,
                chunked=chunked,
            )

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py:699: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754a55f9d0>
conn = <urllib3.connection.HTTPSConnection object at 0x7f754a55f1f0>
method = 'GET'
url = '/api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf&q=%22%22'
timeout = Timeout(connect=None, read=None, total=None), chunked = False
httplib_request_kw = {'body': None, 'headers': {'User-Agent': 'python-requests/2.25.1', 'Accept-Encoding': 'gzip, deflate', 'Accept': '*/*', 'Connection': 'keep-alive'}}
timeout_obj = Timeout(connect=None, read=None, total=None)

    def _make_request(
        self, conn, method, url, timeout=_Default, chunked=False, **httplib_request_kw
    ):
        """
        Perform a request on a given urllib connection object taken from our
        pool.
    
        :param conn:
            a connection from one of our connection pools
    
        :param timeout:
            Socket timeout in seconds for the request. This can be a
            float or integer, which will set the same timeout value for
            the socket connect and the socket read, or an instance of
            :class:`urllib3.util.Timeout`, which gives you more fine-grained
            control over your timeouts.
        """
        self.num_requests += 1
    
        timeout_obj = self._get_timeout(timeout)
        timeout_obj.start_connect()
        conn.timeout = timeout_obj.connect_timeout
    
        # Trigger any extra validation we need to do.
        try:
>           self._validate_conn(conn)

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py:382: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754a55f9d0>
conn = <urllib3.connection.HTTPSConnection object at 0x7f754a55f1f0>

    def _validate_conn(self, conn):
        """
        Called right before a request is made, after the socket is created.
        """
        super(HTTPSConnectionPool, self)._validate_conn(conn)
    
        # Force connect early to allow us to validate the connection.
        if not getattr(conn, "sock", None):  # AppEngine might not have  `.sock`
>           conn.connect()

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py:1010: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connection.HTTPSConnection object at 0x7f754a55f1f0>

    def connect(self):
        # Add certificate verification
>       conn = self._new_conn()

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connection.py:353: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connection.HTTPSConnection object at 0x7f754a55f1f0>

    def _new_conn(self):
        """Establish a socket connection and set nodelay settings on it.
    
        :return: New socket connection.
        """
        extra_kw = {}
        if self.source_address:
            extra_kw["source_address"] = self.source_address
    
        if self.socket_options:
            extra_kw["socket_options"] = self.socket_options
    
        try:
            conn = connection.create_connection(
                (self._dns_host, self.port), self.timeout, **extra_kw
            )
    
        except SocketTimeout:
            raise ConnectTimeoutError(
                self,
                "Connection to %s timed out. (connect timeout=%s)"
                % (self.host, self.timeout),
            )
    
        except SocketError as e:
>           raise NewConnectionError(
                self, "Failed to establish a new connection: %s" % e
            )
E           urllib3.exceptions.NewConnectionError: <urllib3.connection.HTTPSConnection object at 0x7f754a55f1f0>: Failed to establish a new connection: [Errno 110] Connection timed out

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connection.py:181: NewConnectionError

During handling of the above exception, another exception occurred:

self = <requests.adapters.HTTPAdapter object at 0x7f754a55fa90>
request = <PreparedRequest [GET]>, stream = False
timeout = Timeout(connect=None, read=None, total=None), verify = True
cert = None, proxies = OrderedDict()

    def send(self, request, stream=False, timeout=None, verify=True, cert=None, proxies=None):
        """Sends PreparedRequest object. Returns Response object.
    
        :param request: The :class:`PreparedRequest <PreparedRequest>` being sent.
        :param stream: (optional) Whether to stream the request content.
        :param timeout: (optional) How long to wait for the server to send
            data before giving up, as a float, or a :ref:`(connect timeout,
            read timeout) <timeouts>` tuple.
        :type timeout: float or tuple or urllib3 Timeout object
        :param verify: (optional) Either a boolean, in which case it controls whether
            we verify the server's TLS certificate, or a string, in which case it
            must be a path to a CA bundle to use
        :param cert: (optional) Any user-provided SSL certificate to be trusted.
        :param proxies: (optional) The proxies dictionary to apply to the request.
        :rtype: requests.Response
        """
    
        try:
            conn = self.get_connection(request.url, proxies)
        except LocationValueError as e:
            raise InvalidURL(e, request=request)
    
        self.cert_verify(conn, request.url, verify, cert)
        url = self.request_url(request, proxies)
        self.add_headers(request, stream=stream, timeout=timeout, verify=verify, cert=cert, proxies=proxies)
    
        chunked = not (request.body is None or 'Content-Length' in request.headers)
    
        if isinstance(timeout, tuple):
            try:
                connect, read = timeout
                timeout = TimeoutSauce(connect=connect, read=read)
            except ValueError as e:
                # this may raise a string formatting error.
                err = ("Invalid timeout {}. Pass a (connect, read) "
                       "timeout tuple, or a single float to set "
                       "both timeouts to the same value".format(timeout))
                raise ValueError(err)
        elif isinstance(timeout, TimeoutSauce):
            pass
        else:
            timeout = TimeoutSauce(connect=timeout, read=timeout)
    
        try:
            if not chunked:
>               resp = conn.urlopen(
                    method=request.method,
                    url=url,
                    body=request.body,
                    headers=request.headers,
                    redirect=False,
                    assert_same_host=False,
                    preload_content=False,
                    decode_content=False,
                    retries=self.max_retries,
                    timeout=timeout
                )

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/adapters.py:439: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754a55f9d0>
method = 'GET'
url = '/api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf&q=%22%22'
body = None
headers = {'User-Agent': 'python-requests/2.25.1', 'Accept-Encoding': 'gzip, deflate', 'Accept': '*/*', 'Connection': 'keep-alive'}
retries = Retry(total=0, connect=None, read=False, redirect=None, status=None)
redirect = False, assert_same_host = False
timeout = Timeout(connect=None, read=None, total=None), pool_timeout = None
release_conn = False, chunked = False, body_pos = None
response_kw = {'decode_content': False, 'preload_content': False}
parsed_url = Url(scheme=None, auth=None, host=None, port=None, path='/api/1/elastic/SPARC_PortalDatasets_dev/_search', query='api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf&q=%22%22', fragment=None)
destination_scheme = None, conn = None, release_this_conn = True
http_tunnel_required = False, err = None, clean_exit = False

    def urlopen(
        self,
        method,
        url,
        body=None,
        headers=None,
        retries=None,
        redirect=True,
        assert_same_host=True,
        timeout=_Default,
        pool_timeout=None,
        release_conn=None,
        chunked=False,
        body_pos=None,
        **response_kw
    ):
        """
        Get a connection from the pool and perform an HTTP request. This is the
        lowest level call for making a request, so you'll need to specify all
        the raw details.
    
        .. note::
    
           More commonly, it's appropriate to use a convenience method provided
           by :class:`.RequestMethods`, such as :meth:`request`.
    
        .. note::
    
           `release_conn` will only behave as expected if
           `preload_content=False` because we want to make
           `preload_content=False` the default behaviour someday soon without
           breaking backwards compatibility.
    
        :param method:
            HTTP request method (such as GET, POST, PUT, etc.)
    
        :param url:
            The URL to perform the request on.
    
        :param body:
            Data to send in the request body, either :class:`str`, :class:`bytes`,
            an iterable of :class:`str`/:class:`bytes`, or a file-like object.
    
        :param headers:
            Dictionary of custom headers to send, such as User-Agent,
            If-None-Match, etc. If None, pool headers are used. If provided,
            these headers completely replace any pool-specific headers.
    
        :param retries:
            Configure the number of retries to allow before raising a
            :class:`~urllib3.exceptions.MaxRetryError` exception.
    
            Pass ``None`` to retry until you receive a response. Pass a
            :class:`~urllib3.util.retry.Retry` object for fine-grained control
            over different types of retries.
            Pass an integer number to retry connection errors that many times,
            but no other types of errors. Pass zero to never retry.
    
            If ``False``, then retries are disabled and any exception is raised
            immediately. Also, instead of raising a MaxRetryError on redirects,
            the redirect response will be returned.
    
        :type retries: :class:`~urllib3.util.retry.Retry`, False, or an int.
    
        :param redirect:
            If True, automatically handle redirects (status codes 301, 302,
            303, 307, 308). Each redirect counts as a retry. Disabling retries
            will disable redirect, too.
    
        :param assert_same_host:
            If ``True``, will make sure that the host of the pool requests is
            consistent else will raise HostChangedError. When ``False``, you can
            use the pool on an HTTP proxy and request foreign hosts.
    
        :param timeout:
            If specified, overrides the default timeout for this one
            request. It may be a float (in seconds) or an instance of
            :class:`urllib3.util.Timeout`.
    
        :param pool_timeout:
            If set and the pool is set to block=True, then this method will
            block for ``pool_timeout`` seconds and raise EmptyPoolError if no
            connection is available within the time period.
    
        :param release_conn:
            If False, then the urlopen call will not release the connection
            back into the pool once a response is received (but will release if
            you read the entire contents of the response such as when
            `preload_content=True`). This is useful if you're not preloading
            the response's content immediately. You will need to call
            ``r.release_conn()`` on the response ``r`` to return the connection
            back into the pool. If None, it takes the value of
            ``response_kw.get('preload_content', True)``.
    
        :param chunked:
            If True, urllib3 will send the body using chunked transfer
            encoding. Otherwise, urllib3 will send the body using the standard
            content-length form. Defaults to False.
    
        :param int body_pos:
            Position to seek to in file-like body in the event of a retry or
            redirect. Typically this won't need to be set because urllib3 will
            auto-populate the value when needed.
    
        :param \\**response_kw:
            Additional parameters are passed to
            :meth:`urllib3.response.HTTPResponse.from_httplib`
        """
    
        parsed_url = parse_url(url)
        destination_scheme = parsed_url.scheme
    
        if headers is None:
            headers = self.headers
    
        if not isinstance(retries, Retry):
            retries = Retry.from_int(retries, redirect=redirect, default=self.retries)
    
        if release_conn is None:
            release_conn = response_kw.get("preload_content", True)
    
        # Check host
        if assert_same_host and not self.is_same_host(url):
            raise HostChangedError(self, url, retries)
    
        # Ensure that the URL we're connecting to is properly encoded
        if url.startswith("/"):
            url = six.ensure_str(_encode_target(url))
        else:
            url = six.ensure_str(parsed_url.url)
    
        conn = None
    
        # Track whether `conn` needs to be released before
        # returning/raising/recursing. Update this variable if necessary, and
        # leave `release_conn` constant throughout the function. That way, if
        # the function recurses, the original value of `release_conn` will be
        # passed down into the recursive call, and its value will be respected.
        #
        # See issue #651 [1] for details.
        #
        # [1] <https://github.com/urllib3/urllib3/issues/651>
        release_this_conn = release_conn
    
        http_tunnel_required = connection_requires_http_tunnel(
            self.proxy, self.proxy_config, destination_scheme
        )
    
        # Merge the proxy headers. Only done when not using HTTP CONNECT. We
        # have to copy the headers dict so we can safely change it without those
        # changes being reflected in anyone else's copy.
        if not http_tunnel_required:
            headers = headers.copy()
            headers.update(self.proxy_headers)
    
        # Must keep the exception bound to a separate variable or else Python 3
        # complains about UnboundLocalError.
        err = None
    
        # Keep track of whether we cleanly exited the except block. This
        # ensures we do proper cleanup in finally.
        clean_exit = False
    
        # Rewind body position, if needed. Record current position
        # for future rewinds in the event of a redirect/retry.
        body_pos = set_file_position(body, body_pos)
    
        try:
            # Request a connection from the queue.
            timeout_obj = self._get_timeout(timeout)
            conn = self._get_conn(timeout=pool_timeout)
    
            conn.timeout = timeout_obj.connect_timeout
    
            is_new_proxy_conn = self.proxy is not None and not getattr(
                conn, "sock", None
            )
            if is_new_proxy_conn and http_tunnel_required:
                self._prepare_proxy(conn)
    
            # Make the request on the httplib connection object.
            httplib_response = self._make_request(
                conn,
                method,
                url,
                timeout=timeout_obj,
                body=body,
                headers=headers,
                chunked=chunked,
            )
    
            # If we're going to release the connection in ``finally:``, then
            # the response doesn't need to know about the connection. Otherwise
            # it will also try to release it and we'll have a double-release
            # mess.
            response_conn = conn if not release_conn else None
    
            # Pass method to Response for length checking
            response_kw["request_method"] = method
    
            # Import httplib's response into our own wrapper object
            response = self.ResponseCls.from_httplib(
                httplib_response,
                pool=self,
                connection=response_conn,
                retries=retries,
                **response_kw
            )
    
            # Everything went great!
            clean_exit = True
    
        except EmptyPoolError:
            # Didn't get a connection from the pool, no need to clean up
            clean_exit = True
            release_this_conn = False
            raise
    
        except (
            TimeoutError,
            HTTPException,
            SocketError,
            ProtocolError,
            BaseSSLError,
            SSLError,
            CertificateError,
        ) as e:
            # Discard the connection for these exceptions. It will be
            # replaced during the next _get_conn() call.
            clean_exit = False
            if isinstance(e, (BaseSSLError, CertificateError)):
                e = SSLError(e)
            elif isinstance(e, (SocketError, NewConnectionError)) and self.proxy:
                e = ProxyError("Cannot connect to proxy.", e)
            elif isinstance(e, (SocketError, HTTPException)):
                e = ProtocolError("Connection aborted.", e)
    
>           retries = retries.increment(
                method, url, error=e, _pool=self, _stacktrace=sys.exc_info()[2]
            )

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py:755: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = Retry(total=0, connect=None, read=False, redirect=None, status=None)
method = 'GET'
url = '/api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf&q=%22%22'
response = None
error = NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7f754a55f1f0>: Failed to establish a new connection: [Errno 110] Connection timed out')
_pool = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754a55f9d0>
_stacktrace = <traceback object at 0x7f754a55ef40>

    def increment(
        self,
        method=None,
        url=None,
        response=None,
        error=None,
        _pool=None,
        _stacktrace=None,
    ):
        """Return a new Retry object with incremented retry counters.
    
        :param response: A response object, or None, if the server did not
            return a response.
        :type response: :class:`~urllib3.response.HTTPResponse`
        :param Exception error: An error encountered during the request, or
            None if the response was received successfully.
    
        :return: A new ``Retry`` object.
        """
        if self.total is False and error:
            # Disabled, indicate to re-raise the error.
            raise six.reraise(type(error), error, _stacktrace)
    
        total = self.total
        if total is not None:
            total -= 1
    
        connect = self.connect
        read = self.read
        redirect = self.redirect
        status_count = self.status
        other = self.other
        cause = "unknown"
        status = None
        redirect_location = None
    
        if error and self._is_connection_error(error):
            # Connect retry?
            if connect is False:
                raise six.reraise(type(error), error, _stacktrace)
            elif connect is not None:
                connect -= 1
    
        elif error and self._is_read_error(error):
            # Read retry?
            if read is False or not self._is_method_retryable(method):
                raise six.reraise(type(error), error, _stacktrace)
            elif read is not None:
                read -= 1
    
        elif error:
            # Other retry?
            if other is not None:
                other -= 1
    
        elif response and response.get_redirect_location():
            # Redirect retry?
            if redirect is not None:
                redirect -= 1
            cause = "too many redirects"
            redirect_location = response.get_redirect_location()
            status = response.status
    
        else:
            # Incrementing because of a server error like a 500 in
            # status_forcelist and the given method is in the allowed_methods
            cause = ResponseError.GENERIC_ERROR
            if response and response.status:
                if status_count is not None:
                    status_count -= 1
                cause = ResponseError.SPECIFIC_ERROR.format(status_code=response.status)
                status = response.status
    
        history = self.history + (
            RequestHistory(method, url, error, status, redirect_location),
        )
    
        new_retry = self.new(
            total=total,
            connect=connect,
            read=read,
            redirect=redirect,
            status=status_count,
            other=other,
            history=history,
        )
    
        if new_retry.is_exhausted():
>           raise MaxRetryError(_pool, url, error or ResponseError(cause))
E           urllib3.exceptions.MaxRetryError: HTTPSConnectionPool(host='scicrunch.org', port=443): Max retries exceeded with url: /api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf&q=%22%22 (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7f754a55f1f0>: Failed to establish a new connection: [Errno 110] Connection timed out'))

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/util/retry.py:574: MaxRetryError

During handling of the above exception, another exception occurred:

    def test_scicrunch_versions_are_supported():
        # Lines below are to allow the test to be run from the root dir or sparc-api/tests
        current_directory = os.path.dirname(os.path.abspath(__file__))
        app_directory = os.path.join(current_directory, '..', 'app')
    
        # List the contents of the 'app' directory, to find which versions we have files for
        available_versions = os.listdir(app_directory)
    
>       r = requests.get(f'{Config.SCI_CRUNCH_HOST}/_search?api_key={Config.KNOWLEDGEBASE_KEY}&q=""')

tests/test_scicrunch.py:38: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/api.py:76: in get
    return request('get', url, params=params, **kwargs)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/api.py:61: in request
    return session.request(method=method, url=url, **kwargs)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/sessions.py:542: in request
    resp = self.send(prep, **send_kwargs)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/sessions.py:655: in send
    r = adapter.send(request, **kwargs)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <requests.adapters.HTTPAdapter object at 0x7f754a55fa90>
request = <PreparedRequest [GET]>, stream = False
timeout = Timeout(connect=None, read=None, total=None), verify = True
cert = None, proxies = OrderedDict()

    def send(self, request, stream=False, timeout=None, verify=True, cert=None, proxies=None):
        """Sends PreparedRequest object. Returns Response object.
    
        :param request: The :class:`PreparedRequest <PreparedRequest>` being sent.
        :param stream: (optional) Whether to stream the request content.
        :param timeout: (optional) How long to wait for the server to send
            data before giving up, as a float, or a :ref:`(connect timeout,
            read timeout) <timeouts>` tuple.
        :type timeout: float or tuple or urllib3 Timeout object
        :param verify: (optional) Either a boolean, in which case it controls whether
            we verify the server's TLS certificate, or a string, in which case it
            must be a path to a CA bundle to use
        :param cert: (optional) Any user-provided SSL certificate to be trusted.
        :param proxies: (optional) The proxies dictionary to apply to the request.
        :rtype: requests.Response
        """
    
        try:
            conn = self.get_connection(request.url, proxies)
        except LocationValueError as e:
            raise InvalidURL(e, request=request)
    
        self.cert_verify(conn, request.url, verify, cert)
        url = self.request_url(request, proxies)
        self.add_headers(request, stream=stream, timeout=timeout, verify=verify, cert=cert, proxies=proxies)
    
        chunked = not (request.body is None or 'Content-Length' in request.headers)
    
        if isinstance(timeout, tuple):
            try:
                connect, read = timeout
                timeout = TimeoutSauce(connect=connect, read=read)
            except ValueError as e:
                # this may raise a string formatting error.
                err = ("Invalid timeout {}. Pass a (connect, read) "
                       "timeout tuple, or a single float to set "
                       "both timeouts to the same value".format(timeout))
                raise ValueError(err)
        elif isinstance(timeout, TimeoutSauce):
            pass
        else:
            timeout = TimeoutSauce(connect=timeout, read=timeout)
    
        try:
            if not chunked:
                resp = conn.urlopen(
                    method=request.method,
                    url=url,
                    body=request.body,
                    headers=request.headers,
                    redirect=False,
                    assert_same_host=False,
                    preload_content=False,
                    decode_content=False,
                    retries=self.max_retries,
                    timeout=timeout
                )
    
            # Send the request.
            else:
                if hasattr(conn, 'proxy_pool'):
                    conn = conn.proxy_pool
    
                low_conn = conn._get_conn(timeout=DEFAULT_POOL_TIMEOUT)
    
                try:
                    low_conn.putrequest(request.method,
                                        url,
                                        skip_accept_encoding=True)
    
                    for header, value in request.headers.items():
                        low_conn.putheader(header, value)
    
                    low_conn.endheaders()
    
                    for i in request.body:
                        low_conn.send(hex(len(i))[2:].encode('utf-8'))
                        low_conn.send(b'\r\n')
                        low_conn.send(i)
                        low_conn.send(b'\r\n')
                    low_conn.send(b'0\r\n\r\n')
    
                    # Receive the response from the server
                    try:
                        # For Python 2.7, use buffering of HTTP responses
                        r = low_conn.getresponse(buffering=True)
                    except TypeError:
                        # For compatibility with Python 3.3+
                        r = low_conn.getresponse()
    
                    resp = HTTPResponse.from_httplib(
                        r,
                        pool=conn,
                        connection=low_conn,
                        preload_content=False,
                        decode_content=False
                    )
                except:
                    # If we hit any problems here, clean up the connection.
                    # Then, reraise so that we can handle the actual exception.
                    low_conn.close()
                    raise
    
        except (ProtocolError, socket.error) as err:
            raise ConnectionError(err, request=request)
    
        except MaxRetryError as e:
            if isinstance(e.reason, ConnectTimeoutError):
                # TODO: Remove this in 3.0.0: see #2811
                if not isinstance(e.reason, NewConnectionError):
                    raise ConnectTimeout(e, request=request)
    
            if isinstance(e.reason, ResponseError):
                raise RetryError(e, request=request)
    
            if isinstance(e.reason, _ProxyError):
                raise ProxyError(e, request=request)
    
            if isinstance(e.reason, _SSLError):
                # This branch is for urllib3 v1.22 and later.
                raise SSLError(e, request=request)
    
>           raise ConnectionError(e, request=request)
E           requests.exceptions.ConnectionError: HTTPSConnectionPool(host='scicrunch.org', port=443): Max retries exceeded with url: /api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf&q=%22%22 (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7f754a55f1f0>: Failed to establish a new connection: [Errno 110] Connection timed out'))

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/adapters.py:516: ConnectionError
__________________________ test_scicrunch_dataset_doi __________________________

self = <urllib3.connection.HTTPSConnection object at 0x7f754a7a7820>

    def _new_conn(self):
        """Establish a socket connection and set nodelay settings on it.
    
        :return: New socket connection.
        """
        extra_kw = {}
        if self.source_address:
            extra_kw["source_address"] = self.source_address
    
        if self.socket_options:
            extra_kw["socket_options"] = self.socket_options
    
        try:
>           conn = connection.create_connection(
                (self._dns_host, self.port), self.timeout, **extra_kw
            )

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connection.py:169: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

address = ('scicrunch.org', 443), timeout = None, source_address = None
socket_options = [(6, 1, 1)]

    def create_connection(
        address,
        timeout=socket._GLOBAL_DEFAULT_TIMEOUT,
        source_address=None,
        socket_options=None,
    ):
        """Connect to *address* and return the socket object.
    
        Convenience function.  Connect to *address* (a 2-tuple ``(host,
        port)``) and return the socket object.  Passing the optional
        *timeout* parameter will set the timeout on the socket instance
        before attempting to connect.  If no *timeout* is supplied, the
        global default timeout setting returned by :func:`socket.getdefaulttimeout`
        is used.  If *source_address* is set it must be a tuple of (host, port)
        for the socket to bind as a source address before making the connection.
        An host of '' or port 0 tells the OS to use the default.
        """
    
        host, port = address
        if host.startswith("["):
            host = host.strip("[]")
        err = None
    
        # Using the value from allowed_gai_family() in the context of getaddrinfo lets
        # us select whether to work with IPv4 DNS records, IPv6 records, or both.
        # The original create_connection function always returns all records.
        family = allowed_gai_family()
    
        try:
            host.encode("idna")
        except UnicodeError:
            return six.raise_from(
                LocationParseError(u"'%s', label empty or too long" % host), None
            )
    
        for res in socket.getaddrinfo(host, port, family, socket.SOCK_STREAM):
            af, socktype, proto, canonname, sa = res
            sock = None
            try:
                sock = socket.socket(af, socktype, proto)
    
                # If provided, set socket level options before connecting.
                _set_socket_options(sock, socket_options)
    
                if timeout is not socket._GLOBAL_DEFAULT_TIMEOUT:
                    sock.settimeout(timeout)
                if source_address:
                    sock.bind(source_address)
                sock.connect(sa)
                return sock
    
            except socket.error as e:
                err = e
                if sock is not None:
                    sock.close()
                    sock = None
    
        if err is not None:
>           raise err

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/util/connection.py:96: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

address = ('scicrunch.org', 443), timeout = None, source_address = None
socket_options = [(6, 1, 1)]

    def create_connection(
        address,
        timeout=socket._GLOBAL_DEFAULT_TIMEOUT,
        source_address=None,
        socket_options=None,
    ):
        """Connect to *address* and return the socket object.
    
        Convenience function.  Connect to *address* (a 2-tuple ``(host,
        port)``) and return the socket object.  Passing the optional
        *timeout* parameter will set the timeout on the socket instance
        before attempting to connect.  If no *timeout* is supplied, the
        global default timeout setting returned by :func:`socket.getdefaulttimeout`
        is used.  If *source_address* is set it must be a tuple of (host, port)
        for the socket to bind as a source address before making the connection.
        An host of '' or port 0 tells the OS to use the default.
        """
    
        host, port = address
        if host.startswith("["):
            host = host.strip("[]")
        err = None
    
        # Using the value from allowed_gai_family() in the context of getaddrinfo lets
        # us select whether to work with IPv4 DNS records, IPv6 records, or both.
        # The original create_connection function always returns all records.
        family = allowed_gai_family()
    
        try:
            host.encode("idna")
        except UnicodeError:
            return six.raise_from(
                LocationParseError(u"'%s', label empty or too long" % host), None
            )
    
        for res in socket.getaddrinfo(host, port, family, socket.SOCK_STREAM):
            af, socktype, proto, canonname, sa = res
            sock = None
            try:
                sock = socket.socket(af, socktype, proto)
    
                # If provided, set socket level options before connecting.
                _set_socket_options(sock, socket_options)
    
                if timeout is not socket._GLOBAL_DEFAULT_TIMEOUT:
                    sock.settimeout(timeout)
                if source_address:
                    sock.bind(source_address)
>               sock.connect(sa)
E               TimeoutError: [Errno 110] Connection timed out

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/util/connection.py:86: TimeoutError

During handling of the above exception, another exception occurred:

self = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754a7a7d00>
method = 'POST'
url = '/api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf'
body = b'{"query": {"term": {"pennsieve.identifier.aggregate": "55"}}}'
headers = {'User-Agent': 'python-requests/2.25.1', 'Accept-Encoding': 'gzip, deflate', 'Accept': '*/*', 'Connection': 'keep-alive', 'Content-Length': '61', 'Content-Type': 'application/json'}
retries = Retry(total=0, connect=None, read=False, redirect=None, status=None)
redirect = False, assert_same_host = False
timeout = Timeout(connect=None, read=None, total=None), pool_timeout = None
release_conn = False, chunked = False, body_pos = None
response_kw = {'decode_content': False, 'preload_content': False}
parsed_url = Url(scheme=None, auth=None, host=None, port=None, path='/api/1/elastic/SPARC_PortalDatasets_dev/_search', query='api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf', fragment=None)
destination_scheme = None, conn = None, release_this_conn = True
http_tunnel_required = False, err = None, clean_exit = False

    def urlopen(
        self,
        method,
        url,
        body=None,
        headers=None,
        retries=None,
        redirect=True,
        assert_same_host=True,
        timeout=_Default,
        pool_timeout=None,
        release_conn=None,
        chunked=False,
        body_pos=None,
        **response_kw
    ):
        """
        Get a connection from the pool and perform an HTTP request. This is the
        lowest level call for making a request, so you'll need to specify all
        the raw details.
    
        .. note::
    
           More commonly, it's appropriate to use a convenience method provided
           by :class:`.RequestMethods`, such as :meth:`request`.
    
        .. note::
    
           `release_conn` will only behave as expected if
           `preload_content=False` because we want to make
           `preload_content=False` the default behaviour someday soon without
           breaking backwards compatibility.
    
        :param method:
            HTTP request method (such as GET, POST, PUT, etc.)
    
        :param url:
            The URL to perform the request on.
    
        :param body:
            Data to send in the request body, either :class:`str`, :class:`bytes`,
            an iterable of :class:`str`/:class:`bytes`, or a file-like object.
    
        :param headers:
            Dictionary of custom headers to send, such as User-Agent,
            If-None-Match, etc. If None, pool headers are used. If provided,
            these headers completely replace any pool-specific headers.
    
        :param retries:
            Configure the number of retries to allow before raising a
            :class:`~urllib3.exceptions.MaxRetryError` exception.
    
            Pass ``None`` to retry until you receive a response. Pass a
            :class:`~urllib3.util.retry.Retry` object for fine-grained control
            over different types of retries.
            Pass an integer number to retry connection errors that many times,
            but no other types of errors. Pass zero to never retry.
    
            If ``False``, then retries are disabled and any exception is raised
            immediately. Also, instead of raising a MaxRetryError on redirects,
            the redirect response will be returned.
    
        :type retries: :class:`~urllib3.util.retry.Retry`, False, or an int.
    
        :param redirect:
            If True, automatically handle redirects (status codes 301, 302,
            303, 307, 308). Each redirect counts as a retry. Disabling retries
            will disable redirect, too.
    
        :param assert_same_host:
            If ``True``, will make sure that the host of the pool requests is
            consistent else will raise HostChangedError. When ``False``, you can
            use the pool on an HTTP proxy and request foreign hosts.
    
        :param timeout:
            If specified, overrides the default timeout for this one
            request. It may be a float (in seconds) or an instance of
            :class:`urllib3.util.Timeout`.
    
        :param pool_timeout:
            If set and the pool is set to block=True, then this method will
            block for ``pool_timeout`` seconds and raise EmptyPoolError if no
            connection is available within the time period.
    
        :param release_conn:
            If False, then the urlopen call will not release the connection
            back into the pool once a response is received (but will release if
            you read the entire contents of the response such as when
            `preload_content=True`). This is useful if you're not preloading
            the response's content immediately. You will need to call
            ``r.release_conn()`` on the response ``r`` to return the connection
            back into the pool. If None, it takes the value of
            ``response_kw.get('preload_content', True)``.
    
        :param chunked:
            If True, urllib3 will send the body using chunked transfer
            encoding. Otherwise, urllib3 will send the body using the standard
            content-length form. Defaults to False.
    
        :param int body_pos:
            Position to seek to in file-like body in the event of a retry or
            redirect. Typically this won't need to be set because urllib3 will
            auto-populate the value when needed.
    
        :param \\**response_kw:
            Additional parameters are passed to
            :meth:`urllib3.response.HTTPResponse.from_httplib`
        """
    
        parsed_url = parse_url(url)
        destination_scheme = parsed_url.scheme
    
        if headers is None:
            headers = self.headers
    
        if not isinstance(retries, Retry):
            retries = Retry.from_int(retries, redirect=redirect, default=self.retries)
    
        if release_conn is None:
            release_conn = response_kw.get("preload_content", True)
    
        # Check host
        if assert_same_host and not self.is_same_host(url):
            raise HostChangedError(self, url, retries)
    
        # Ensure that the URL we're connecting to is properly encoded
        if url.startswith("/"):
            url = six.ensure_str(_encode_target(url))
        else:
            url = six.ensure_str(parsed_url.url)
    
        conn = None
    
        # Track whether `conn` needs to be released before
        # returning/raising/recursing. Update this variable if necessary, and
        # leave `release_conn` constant throughout the function. That way, if
        # the function recurses, the original value of `release_conn` will be
        # passed down into the recursive call, and its value will be respected.
        #
        # See issue #651 [1] for details.
        #
        # [1] <https://github.com/urllib3/urllib3/issues/651>
        release_this_conn = release_conn
    
        http_tunnel_required = connection_requires_http_tunnel(
            self.proxy, self.proxy_config, destination_scheme
        )
    
        # Merge the proxy headers. Only done when not using HTTP CONNECT. We
        # have to copy the headers dict so we can safely change it without those
        # changes being reflected in anyone else's copy.
        if not http_tunnel_required:
            headers = headers.copy()
            headers.update(self.proxy_headers)
    
        # Must keep the exception bound to a separate variable or else Python 3
        # complains about UnboundLocalError.
        err = None
    
        # Keep track of whether we cleanly exited the except block. This
        # ensures we do proper cleanup in finally.
        clean_exit = False
    
        # Rewind body position, if needed. Record current position
        # for future rewinds in the event of a redirect/retry.
        body_pos = set_file_position(body, body_pos)
    
        try:
            # Request a connection from the queue.
            timeout_obj = self._get_timeout(timeout)
            conn = self._get_conn(timeout=pool_timeout)
    
            conn.timeout = timeout_obj.connect_timeout
    
            is_new_proxy_conn = self.proxy is not None and not getattr(
                conn, "sock", None
            )
            if is_new_proxy_conn and http_tunnel_required:
                self._prepare_proxy(conn)
    
            # Make the request on the httplib connection object.
>           httplib_response = self._make_request(
                conn,
                method,
                url,
                timeout=timeout_obj,
                body=body,
                headers=headers,
                chunked=chunked,
            )

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py:699: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754a7a7d00>
conn = <urllib3.connection.HTTPSConnection object at 0x7f754a7a7820>
method = 'POST'
url = '/api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf'
timeout = Timeout(connect=None, read=None, total=None), chunked = False
httplib_request_kw = {'body': b'{"query": {"term": {"pennsieve.identifier.aggregate": "55"}}}', 'headers': {'User-Agent': 'python-requests/...ip, deflate', 'Accept': '*/*', 'Connection': 'keep-alive', 'Content-Length': '61', 'Content-Type': 'application/json'}}
timeout_obj = Timeout(connect=None, read=None, total=None)

    def _make_request(
        self, conn, method, url, timeout=_Default, chunked=False, **httplib_request_kw
    ):
        """
        Perform a request on a given urllib connection object taken from our
        pool.
    
        :param conn:
            a connection from one of our connection pools
    
        :param timeout:
            Socket timeout in seconds for the request. This can be a
            float or integer, which will set the same timeout value for
            the socket connect and the socket read, or an instance of
            :class:`urllib3.util.Timeout`, which gives you more fine-grained
            control over your timeouts.
        """
        self.num_requests += 1
    
        timeout_obj = self._get_timeout(timeout)
        timeout_obj.start_connect()
        conn.timeout = timeout_obj.connect_timeout
    
        # Trigger any extra validation we need to do.
        try:
>           self._validate_conn(conn)

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py:382: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754a7a7d00>
conn = <urllib3.connection.HTTPSConnection object at 0x7f754a7a7820>

    def _validate_conn(self, conn):
        """
        Called right before a request is made, after the socket is created.
        """
        super(HTTPSConnectionPool, self)._validate_conn(conn)
    
        # Force connect early to allow us to validate the connection.
        if not getattr(conn, "sock", None):  # AppEngine might not have  `.sock`
>           conn.connect()

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py:1010: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connection.HTTPSConnection object at 0x7f754a7a7820>

    def connect(self):
        # Add certificate verification
>       conn = self._new_conn()

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connection.py:353: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connection.HTTPSConnection object at 0x7f754a7a7820>

    def _new_conn(self):
        """Establish a socket connection and set nodelay settings on it.
    
        :return: New socket connection.
        """
        extra_kw = {}
        if self.source_address:
            extra_kw["source_address"] = self.source_address
    
        if self.socket_options:
            extra_kw["socket_options"] = self.socket_options
    
        try:
            conn = connection.create_connection(
                (self._dns_host, self.port), self.timeout, **extra_kw
            )
    
        except SocketTimeout:
            raise ConnectTimeoutError(
                self,
                "Connection to %s timed out. (connect timeout=%s)"
                % (self.host, self.timeout),
            )
    
        except SocketError as e:
>           raise NewConnectionError(
                self, "Failed to establish a new connection: %s" % e
            )
E           urllib3.exceptions.NewConnectionError: <urllib3.connection.HTTPSConnection object at 0x7f754a7a7820>: Failed to establish a new connection: [Errno 110] Connection timed out

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connection.py:181: NewConnectionError

During handling of the above exception, another exception occurred:

self = <requests.adapters.HTTPAdapter object at 0x7f754a86e880>
request = <PreparedRequest [POST]>, stream = False
timeout = Timeout(connect=None, read=None, total=None), verify = True
cert = None, proxies = OrderedDict()

    def send(self, request, stream=False, timeout=None, verify=True, cert=None, proxies=None):
        """Sends PreparedRequest object. Returns Response object.
    
        :param request: The :class:`PreparedRequest <PreparedRequest>` being sent.
        :param stream: (optional) Whether to stream the request content.
        :param timeout: (optional) How long to wait for the server to send
            data before giving up, as a float, or a :ref:`(connect timeout,
            read timeout) <timeouts>` tuple.
        :type timeout: float or tuple or urllib3 Timeout object
        :param verify: (optional) Either a boolean, in which case it controls whether
            we verify the server's TLS certificate, or a string, in which case it
            must be a path to a CA bundle to use
        :param cert: (optional) Any user-provided SSL certificate to be trusted.
        :param proxies: (optional) The proxies dictionary to apply to the request.
        :rtype: requests.Response
        """
    
        try:
            conn = self.get_connection(request.url, proxies)
        except LocationValueError as e:
            raise InvalidURL(e, request=request)
    
        self.cert_verify(conn, request.url, verify, cert)
        url = self.request_url(request, proxies)
        self.add_headers(request, stream=stream, timeout=timeout, verify=verify, cert=cert, proxies=proxies)
    
        chunked = not (request.body is None or 'Content-Length' in request.headers)
    
        if isinstance(timeout, tuple):
            try:
                connect, read = timeout
                timeout = TimeoutSauce(connect=connect, read=read)
            except ValueError as e:
                # this may raise a string formatting error.
                err = ("Invalid timeout {}. Pass a (connect, read) "
                       "timeout tuple, or a single float to set "
                       "both timeouts to the same value".format(timeout))
                raise ValueError(err)
        elif isinstance(timeout, TimeoutSauce):
            pass
        else:
            timeout = TimeoutSauce(connect=timeout, read=timeout)
    
        try:
            if not chunked:
>               resp = conn.urlopen(
                    method=request.method,
                    url=url,
                    body=request.body,
                    headers=request.headers,
                    redirect=False,
                    assert_same_host=False,
                    preload_content=False,
                    decode_content=False,
                    retries=self.max_retries,
                    timeout=timeout
                )

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/adapters.py:439: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754a7a7d00>
method = 'POST'
url = '/api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf'
body = b'{"query": {"term": {"pennsieve.identifier.aggregate": "55"}}}'
headers = {'User-Agent': 'python-requests/2.25.1', 'Accept-Encoding': 'gzip, deflate', 'Accept': '*/*', 'Connection': 'keep-alive', 'Content-Length': '61', 'Content-Type': 'application/json'}
retries = Retry(total=0, connect=None, read=False, redirect=None, status=None)
redirect = False, assert_same_host = False
timeout = Timeout(connect=None, read=None, total=None), pool_timeout = None
release_conn = False, chunked = False, body_pos = None
response_kw = {'decode_content': False, 'preload_content': False}
parsed_url = Url(scheme=None, auth=None, host=None, port=None, path='/api/1/elastic/SPARC_PortalDatasets_dev/_search', query='api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf', fragment=None)
destination_scheme = None, conn = None, release_this_conn = True
http_tunnel_required = False, err = None, clean_exit = False

    def urlopen(
        self,
        method,
        url,
        body=None,
        headers=None,
        retries=None,
        redirect=True,
        assert_same_host=True,
        timeout=_Default,
        pool_timeout=None,
        release_conn=None,
        chunked=False,
        body_pos=None,
        **response_kw
    ):
        """
        Get a connection from the pool and perform an HTTP request. This is the
        lowest level call for making a request, so you'll need to specify all
        the raw details.
    
        .. note::
    
           More commonly, it's appropriate to use a convenience method provided
           by :class:`.RequestMethods`, such as :meth:`request`.
    
        .. note::
    
           `release_conn` will only behave as expected if
           `preload_content=False` because we want to make
           `preload_content=False` the default behaviour someday soon without
           breaking backwards compatibility.
    
        :param method:
            HTTP request method (such as GET, POST, PUT, etc.)
    
        :param url:
            The URL to perform the request on.
    
        :param body:
            Data to send in the request body, either :class:`str`, :class:`bytes`,
            an iterable of :class:`str`/:class:`bytes`, or a file-like object.
    
        :param headers:
            Dictionary of custom headers to send, such as User-Agent,
            If-None-Match, etc. If None, pool headers are used. If provided,
            these headers completely replace any pool-specific headers.
    
        :param retries:
            Configure the number of retries to allow before raising a
            :class:`~urllib3.exceptions.MaxRetryError` exception.
    
            Pass ``None`` to retry until you receive a response. Pass a
            :class:`~urllib3.util.retry.Retry` object for fine-grained control
            over different types of retries.
            Pass an integer number to retry connection errors that many times,
            but no other types of errors. Pass zero to never retry.
    
            If ``False``, then retries are disabled and any exception is raised
            immediately. Also, instead of raising a MaxRetryError on redirects,
            the redirect response will be returned.
    
        :type retries: :class:`~urllib3.util.retry.Retry`, False, or an int.
    
        :param redirect:
            If True, automatically handle redirects (status codes 301, 302,
            303, 307, 308). Each redirect counts as a retry. Disabling retries
            will disable redirect, too.
    
        :param assert_same_host:
            If ``True``, will make sure that the host of the pool requests is
            consistent else will raise HostChangedError. When ``False``, you can
            use the pool on an HTTP proxy and request foreign hosts.
    
        :param timeout:
            If specified, overrides the default timeout for this one
            request. It may be a float (in seconds) or an instance of
            :class:`urllib3.util.Timeout`.
    
        :param pool_timeout:
            If set and the pool is set to block=True, then this method will
            block for ``pool_timeout`` seconds and raise EmptyPoolError if no
            connection is available within the time period.
    
        :param release_conn:
            If False, then the urlopen call will not release the connection
            back into the pool once a response is received (but will release if
            you read the entire contents of the response such as when
            `preload_content=True`). This is useful if you're not preloading
            the response's content immediately. You will need to call
            ``r.release_conn()`` on the response ``r`` to return the connection
            back into the pool. If None, it takes the value of
            ``response_kw.get('preload_content', True)``.
    
        :param chunked:
            If True, urllib3 will send the body using chunked transfer
            encoding. Otherwise, urllib3 will send the body using the standard
            content-length form. Defaults to False.
    
        :param int body_pos:
            Position to seek to in file-like body in the event of a retry or
            redirect. Typically this won't need to be set because urllib3 will
            auto-populate the value when needed.
    
        :param \\**response_kw:
            Additional parameters are passed to
            :meth:`urllib3.response.HTTPResponse.from_httplib`
        """
    
        parsed_url = parse_url(url)
        destination_scheme = parsed_url.scheme
    
        if headers is None:
            headers = self.headers
    
        if not isinstance(retries, Retry):
            retries = Retry.from_int(retries, redirect=redirect, default=self.retries)
    
        if release_conn is None:
            release_conn = response_kw.get("preload_content", True)
    
        # Check host
        if assert_same_host and not self.is_same_host(url):
            raise HostChangedError(self, url, retries)
    
        # Ensure that the URL we're connecting to is properly encoded
        if url.startswith("/"):
            url = six.ensure_str(_encode_target(url))
        else:
            url = six.ensure_str(parsed_url.url)
    
        conn = None
    
        # Track whether `conn` needs to be released before
        # returning/raising/recursing. Update this variable if necessary, and
        # leave `release_conn` constant throughout the function. That way, if
        # the function recurses, the original value of `release_conn` will be
        # passed down into the recursive call, and its value will be respected.
        #
        # See issue #651 [1] for details.
        #
        # [1] <https://github.com/urllib3/urllib3/issues/651>
        release_this_conn = release_conn
    
        http_tunnel_required = connection_requires_http_tunnel(
            self.proxy, self.proxy_config, destination_scheme
        )
    
        # Merge the proxy headers. Only done when not using HTTP CONNECT. We
        # have to copy the headers dict so we can safely change it without those
        # changes being reflected in anyone else's copy.
        if not http_tunnel_required:
            headers = headers.copy()
            headers.update(self.proxy_headers)
    
        # Must keep the exception bound to a separate variable or else Python 3
        # complains about UnboundLocalError.
        err = None
    
        # Keep track of whether we cleanly exited the except block. This
        # ensures we do proper cleanup in finally.
        clean_exit = False
    
        # Rewind body position, if needed. Record current position
        # for future rewinds in the event of a redirect/retry.
        body_pos = set_file_position(body, body_pos)
    
        try:
            # Request a connection from the queue.
            timeout_obj = self._get_timeout(timeout)
            conn = self._get_conn(timeout=pool_timeout)
    
            conn.timeout = timeout_obj.connect_timeout
    
            is_new_proxy_conn = self.proxy is not None and not getattr(
                conn, "sock", None
            )
            if is_new_proxy_conn and http_tunnel_required:
                self._prepare_proxy(conn)
    
            # Make the request on the httplib connection object.
            httplib_response = self._make_request(
                conn,
                method,
                url,
                timeout=timeout_obj,
                body=body,
                headers=headers,
                chunked=chunked,
            )
    
            # If we're going to release the connection in ``finally:``, then
            # the response doesn't need to know about the connection. Otherwise
            # it will also try to release it and we'll have a double-release
            # mess.
            response_conn = conn if not release_conn else None
    
            # Pass method to Response for length checking
            response_kw["request_method"] = method
    
            # Import httplib's response into our own wrapper object
            response = self.ResponseCls.from_httplib(
                httplib_response,
                pool=self,
                connection=response_conn,
                retries=retries,
                **response_kw
            )
    
            # Everything went great!
            clean_exit = True
    
        except EmptyPoolError:
            # Didn't get a connection from the pool, no need to clean up
            clean_exit = True
            release_this_conn = False
            raise
    
        except (
            TimeoutError,
            HTTPException,
            SocketError,
            ProtocolError,
            BaseSSLError,
            SSLError,
            CertificateError,
        ) as e:
            # Discard the connection for these exceptions. It will be
            # replaced during the next _get_conn() call.
            clean_exit = False
            if isinstance(e, (BaseSSLError, CertificateError)):
                e = SSLError(e)
            elif isinstance(e, (SocketError, NewConnectionError)) and self.proxy:
                e = ProxyError("Cannot connect to proxy.", e)
            elif isinstance(e, (SocketError, HTTPException)):
                e = ProtocolError("Connection aborted.", e)
    
>           retries = retries.increment(
                method, url, error=e, _pool=self, _stacktrace=sys.exc_info()[2]
            )

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py:755: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = Retry(total=0, connect=None, read=False, redirect=None, status=None)
method = 'POST'
url = '/api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf'
response = None
error = NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7f754a7a7820>: Failed to establish a new connection: [Errno 110] Connection timed out')
_pool = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754a7a7d00>
_stacktrace = <traceback object at 0x7f754a886640>

    def increment(
        self,
        method=None,
        url=None,
        response=None,
        error=None,
        _pool=None,
        _stacktrace=None,
    ):
        """Return a new Retry object with incremented retry counters.
    
        :param response: A response object, or None, if the server did not
            return a response.
        :type response: :class:`~urllib3.response.HTTPResponse`
        :param Exception error: An error encountered during the request, or
            None if the response was received successfully.
    
        :return: A new ``Retry`` object.
        """
        if self.total is False and error:
            # Disabled, indicate to re-raise the error.
            raise six.reraise(type(error), error, _stacktrace)
    
        total = self.total
        if total is not None:
            total -= 1
    
        connect = self.connect
        read = self.read
        redirect = self.redirect
        status_count = self.status
        other = self.other
        cause = "unknown"
        status = None
        redirect_location = None
    
        if error and self._is_connection_error(error):
            # Connect retry?
            if connect is False:
                raise six.reraise(type(error), error, _stacktrace)
            elif connect is not None:
                connect -= 1
    
        elif error and self._is_read_error(error):
            # Read retry?
            if read is False or not self._is_method_retryable(method):
                raise six.reraise(type(error), error, _stacktrace)
            elif read is not None:
                read -= 1
    
        elif error:
            # Other retry?
            if other is not None:
                other -= 1
    
        elif response and response.get_redirect_location():
            # Redirect retry?
            if redirect is not None:
                redirect -= 1
            cause = "too many redirects"
            redirect_location = response.get_redirect_location()
            status = response.status
    
        else:
            # Incrementing because of a server error like a 500 in
            # status_forcelist and the given method is in the allowed_methods
            cause = ResponseError.GENERIC_ERROR
            if response and response.status:
                if status_count is not None:
                    status_count -= 1
                cause = ResponseError.SPECIFIC_ERROR.format(status_code=response.status)
                status = response.status
    
        history = self.history + (
            RequestHistory(method, url, error, status, redirect_location),
        )
    
        new_retry = self.new(
            total=total,
            connect=connect,
            read=read,
            redirect=redirect,
            status=status_count,
            other=other,
            history=history,
        )
    
        if new_retry.is_exhausted():
>           raise MaxRetryError(_pool, url, error or ResponseError(cause))
E           urllib3.exceptions.MaxRetryError: HTTPSConnectionPool(host='scicrunch.org', port=443): Max retries exceeded with url: /api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7f754a7a7820>: Failed to establish a new connection: [Errno 110] Connection timed out'))

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/util/retry.py:574: MaxRetryError

During handling of the above exception, another exception occurred:

client = <FlaskClient <Flask 'app.main'>>

    def test_scicrunch_dataset_doi(client):
        # Testing with dataset 55
        identifier = "55"
>       run_doi_test = check_doi_status(client, identifier, '10.26275/pzek-91wx')

tests/test_scicrunch.py:68: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
tests/test_scicrunch.py:53: in check_doi_status
    r = client.get('/dataset_info/using_pennsieve_identifier', query_string={'identifier': dataset_id})
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/werkzeug/test.py:1029: in get
    return self.open(*args, **kw)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/testing.py:222: in open
    return Client.open(
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/werkzeug/test.py:993: in open
    response = self.run_wsgi_app(environ.copy(), buffered=buffered)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/werkzeug/test.py:884: in run_wsgi_app
    rv = run_wsgi_app(self.application, environ, buffered=buffered)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/werkzeug/test.py:1119: in run_wsgi_app
    app_rv = app(environ, start_response)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:2463: in __call__
    return self.wsgi_app(environ, start_response)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:2449: in wsgi_app
    response = self.handle_exception(e)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask_cors/extension.py:161: in wrapped_function
    return cors_after_request(app.make_response(f(*args, **kwargs)))
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1866: in handle_exception
    reraise(exc_type, exc_value, tb)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/_compat.py:39: in reraise
    raise value
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:2446: in wsgi_app
    response = self.full_dispatch_request()
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1951: in full_dispatch_request
    rv = self.handle_user_exception(e)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask_cors/extension.py:161: in wrapped_function
    return cors_after_request(app.make_response(f(*args, **kwargs)))
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1820: in handle_user_exception
    reraise(exc_type, exc_value, tb)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/_compat.py:39: in reraise
    raise value
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1949: in full_dispatch_request
    rv = self.dispatch_request()
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1935: in dispatch_request
    return self.view_functions[rule.endpoint](**req.view_args)
app/main.py:602: in get_dataset_info_pennsieve_identifier
    return reform_dataset_results(dataset_search(query))
app/main.py:663: in dataset_search
    response = requests.post(f'{Config.SCI_CRUNCH_HOST}/_search',
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/api.py:119: in post
    return request('post', url, data=data, json=json, **kwargs)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/api.py:61: in request
    return session.request(method=method, url=url, **kwargs)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/sessions.py:542: in request
    resp = self.send(prep, **send_kwargs)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/sessions.py:655: in send
    r = adapter.send(request, **kwargs)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <requests.adapters.HTTPAdapter object at 0x7f754a86e880>
request = <PreparedRequest [POST]>, stream = False
timeout = Timeout(connect=None, read=None, total=None), verify = True
cert = None, proxies = OrderedDict()

    def send(self, request, stream=False, timeout=None, verify=True, cert=None, proxies=None):
        """Sends PreparedRequest object. Returns Response object.
    
        :param request: The :class:`PreparedRequest <PreparedRequest>` being sent.
        :param stream: (optional) Whether to stream the request content.
        :param timeout: (optional) How long to wait for the server to send
            data before giving up, as a float, or a :ref:`(connect timeout,
            read timeout) <timeouts>` tuple.
        :type timeout: float or tuple or urllib3 Timeout object
        :param verify: (optional) Either a boolean, in which case it controls whether
            we verify the server's TLS certificate, or a string, in which case it
            must be a path to a CA bundle to use
        :param cert: (optional) Any user-provided SSL certificate to be trusted.
        :param proxies: (optional) The proxies dictionary to apply to the request.
        :rtype: requests.Response
        """
    
        try:
            conn = self.get_connection(request.url, proxies)
        except LocationValueError as e:
            raise InvalidURL(e, request=request)
    
        self.cert_verify(conn, request.url, verify, cert)
        url = self.request_url(request, proxies)
        self.add_headers(request, stream=stream, timeout=timeout, verify=verify, cert=cert, proxies=proxies)
    
        chunked = not (request.body is None or 'Content-Length' in request.headers)
    
        if isinstance(timeout, tuple):
            try:
                connect, read = timeout
                timeout = TimeoutSauce(connect=connect, read=read)
            except ValueError as e:
                # this may raise a string formatting error.
                err = ("Invalid timeout {}. Pass a (connect, read) "
                       "timeout tuple, or a single float to set "
                       "both timeouts to the same value".format(timeout))
                raise ValueError(err)
        elif isinstance(timeout, TimeoutSauce):
            pass
        else:
            timeout = TimeoutSauce(connect=timeout, read=timeout)
    
        try:
            if not chunked:
                resp = conn.urlopen(
                    method=request.method,
                    url=url,
                    body=request.body,
                    headers=request.headers,
                    redirect=False,
                    assert_same_host=False,
                    preload_content=False,
                    decode_content=False,
                    retries=self.max_retries,
                    timeout=timeout
                )
    
            # Send the request.
            else:
                if hasattr(conn, 'proxy_pool'):
                    conn = conn.proxy_pool
    
                low_conn = conn._get_conn(timeout=DEFAULT_POOL_TIMEOUT)
    
                try:
                    low_conn.putrequest(request.method,
                                        url,
                                        skip_accept_encoding=True)
    
                    for header, value in request.headers.items():
                        low_conn.putheader(header, value)
    
                    low_conn.endheaders()
    
                    for i in request.body:
                        low_conn.send(hex(len(i))[2:].encode('utf-8'))
                        low_conn.send(b'\r\n')
                        low_conn.send(i)
                        low_conn.send(b'\r\n')
                    low_conn.send(b'0\r\n\r\n')
    
                    # Receive the response from the server
                    try:
                        # For Python 2.7, use buffering of HTTP responses
                        r = low_conn.getresponse(buffering=True)
                    except TypeError:
                        # For compatibility with Python 3.3+
                        r = low_conn.getresponse()
    
                    resp = HTTPResponse.from_httplib(
                        r,
                        pool=conn,
                        connection=low_conn,
                        preload_content=False,
                        decode_content=False
                    )
                except:
                    # If we hit any problems here, clean up the connection.
                    # Then, reraise so that we can handle the actual exception.
                    low_conn.close()
                    raise
    
        except (ProtocolError, socket.error) as err:
            raise ConnectionError(err, request=request)
    
        except MaxRetryError as e:
            if isinstance(e.reason, ConnectTimeoutError):
                # TODO: Remove this in 3.0.0: see #2811
                if not isinstance(e.reason, NewConnectionError):
                    raise ConnectTimeout(e, request=request)
    
            if isinstance(e.reason, ResponseError):
                raise RetryError(e, request=request)
    
            if isinstance(e.reason, _ProxyError):
                raise ProxyError(e, request=request)
    
            if isinstance(e.reason, _SSLError):
                # This branch is for urllib3 v1.22 and later.
                raise SSLError(e, request=request)
    
>           raise ConnectionError(e, request=request)
E           requests.exceptions.ConnectionError: HTTPSConnectionPool(host='scicrunch.org', port=443): Max retries exceeded with url: /api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7f754a7a7820>: Failed to establish a new connection: [Errno 110] Connection timed out'))

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/adapters.py:516: ConnectionError
_____________________ test_scicrunch_multiple_dataset_doi ______________________

self = <urllib3.connection.HTTPSConnection object at 0x7f754a52ec10>

    def _new_conn(self):
        """Establish a socket connection and set nodelay settings on it.
    
        :return: New socket connection.
        """
        extra_kw = {}
        if self.source_address:
            extra_kw["source_address"] = self.source_address
    
        if self.socket_options:
            extra_kw["socket_options"] = self.socket_options
    
        try:
>           conn = connection.create_connection(
                (self._dns_host, self.port), self.timeout, **extra_kw
            )

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connection.py:169: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

address = ('scicrunch.org', 443), timeout = None, source_address = None
socket_options = [(6, 1, 1)]

    def create_connection(
        address,
        timeout=socket._GLOBAL_DEFAULT_TIMEOUT,
        source_address=None,
        socket_options=None,
    ):
        """Connect to *address* and return the socket object.
    
        Convenience function.  Connect to *address* (a 2-tuple ``(host,
        port)``) and return the socket object.  Passing the optional
        *timeout* parameter will set the timeout on the socket instance
        before attempting to connect.  If no *timeout* is supplied, the
        global default timeout setting returned by :func:`socket.getdefaulttimeout`
        is used.  If *source_address* is set it must be a tuple of (host, port)
        for the socket to bind as a source address before making the connection.
        An host of '' or port 0 tells the OS to use the default.
        """
    
        host, port = address
        if host.startswith("["):
            host = host.strip("[]")
        err = None
    
        # Using the value from allowed_gai_family() in the context of getaddrinfo lets
        # us select whether to work with IPv4 DNS records, IPv6 records, or both.
        # The original create_connection function always returns all records.
        family = allowed_gai_family()
    
        try:
            host.encode("idna")
        except UnicodeError:
            return six.raise_from(
                LocationParseError(u"'%s', label empty or too long" % host), None
            )
    
        for res in socket.getaddrinfo(host, port, family, socket.SOCK_STREAM):
            af, socktype, proto, canonname, sa = res
            sock = None
            try:
                sock = socket.socket(af, socktype, proto)
    
                # If provided, set socket level options before connecting.
                _set_socket_options(sock, socket_options)
    
                if timeout is not socket._GLOBAL_DEFAULT_TIMEOUT:
                    sock.settimeout(timeout)
                if source_address:
                    sock.bind(source_address)
                sock.connect(sa)
                return sock
    
            except socket.error as e:
                err = e
                if sock is not None:
                    sock.close()
                    sock = None
    
        if err is not None:
>           raise err

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/util/connection.py:96: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

address = ('scicrunch.org', 443), timeout = None, source_address = None
socket_options = [(6, 1, 1)]

    def create_connection(
        address,
        timeout=socket._GLOBAL_DEFAULT_TIMEOUT,
        source_address=None,
        socket_options=None,
    ):
        """Connect to *address* and return the socket object.
    
        Convenience function.  Connect to *address* (a 2-tuple ``(host,
        port)``) and return the socket object.  Passing the optional
        *timeout* parameter will set the timeout on the socket instance
        before attempting to connect.  If no *timeout* is supplied, the
        global default timeout setting returned by :func:`socket.getdefaulttimeout`
        is used.  If *source_address* is set it must be a tuple of (host, port)
        for the socket to bind as a source address before making the connection.
        An host of '' or port 0 tells the OS to use the default.
        """
    
        host, port = address
        if host.startswith("["):
            host = host.strip("[]")
        err = None
    
        # Using the value from allowed_gai_family() in the context of getaddrinfo lets
        # us select whether to work with IPv4 DNS records, IPv6 records, or both.
        # The original create_connection function always returns all records.
        family = allowed_gai_family()
    
        try:
            host.encode("idna")
        except UnicodeError:
            return six.raise_from(
                LocationParseError(u"'%s', label empty or too long" % host), None
            )
    
        for res in socket.getaddrinfo(host, port, family, socket.SOCK_STREAM):
            af, socktype, proto, canonname, sa = res
            sock = None
            try:
                sock = socket.socket(af, socktype, proto)
    
                # If provided, set socket level options before connecting.
                _set_socket_options(sock, socket_options)
    
                if timeout is not socket._GLOBAL_DEFAULT_TIMEOUT:
                    sock.settimeout(timeout)
                if source_address:
                    sock.bind(source_address)
>               sock.connect(sa)
E               TimeoutError: [Errno 110] Connection timed out

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/util/connection.py:86: TimeoutError

During handling of the above exception, another exception occurred:

self = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754a5f2310>
method = 'POST'
url = '/api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf'
body = b'{"query": {"term": {"pennsieve.identifier.aggregate": "55"}}}'
headers = {'User-Agent': 'python-requests/2.25.1', 'Accept-Encoding': 'gzip, deflate', 'Accept': '*/*', 'Connection': 'keep-alive', 'Content-Length': '61', 'Content-Type': 'application/json'}
retries = Retry(total=0, connect=None, read=False, redirect=None, status=None)
redirect = False, assert_same_host = False
timeout = Timeout(connect=None, read=None, total=None), pool_timeout = None
release_conn = False, chunked = False, body_pos = None
response_kw = {'decode_content': False, 'preload_content': False}
parsed_url = Url(scheme=None, auth=None, host=None, port=None, path='/api/1/elastic/SPARC_PortalDatasets_dev/_search', query='api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf', fragment=None)
destination_scheme = None, conn = None, release_this_conn = True
http_tunnel_required = False, err = None, clean_exit = False

    def urlopen(
        self,
        method,
        url,
        body=None,
        headers=None,
        retries=None,
        redirect=True,
        assert_same_host=True,
        timeout=_Default,
        pool_timeout=None,
        release_conn=None,
        chunked=False,
        body_pos=None,
        **response_kw
    ):
        """
        Get a connection from the pool and perform an HTTP request. This is the
        lowest level call for making a request, so you'll need to specify all
        the raw details.
    
        .. note::
    
           More commonly, it's appropriate to use a convenience method provided
           by :class:`.RequestMethods`, such as :meth:`request`.
    
        .. note::
    
           `release_conn` will only behave as expected if
           `preload_content=False` because we want to make
           `preload_content=False` the default behaviour someday soon without
           breaking backwards compatibility.
    
        :param method:
            HTTP request method (such as GET, POST, PUT, etc.)
    
        :param url:
            The URL to perform the request on.
    
        :param body:
            Data to send in the request body, either :class:`str`, :class:`bytes`,
            an iterable of :class:`str`/:class:`bytes`, or a file-like object.
    
        :param headers:
            Dictionary of custom headers to send, such as User-Agent,
            If-None-Match, etc. If None, pool headers are used. If provided,
            these headers completely replace any pool-specific headers.
    
        :param retries:
            Configure the number of retries to allow before raising a
            :class:`~urllib3.exceptions.MaxRetryError` exception.
    
            Pass ``None`` to retry until you receive a response. Pass a
            :class:`~urllib3.util.retry.Retry` object for fine-grained control
            over different types of retries.
            Pass an integer number to retry connection errors that many times,
            but no other types of errors. Pass zero to never retry.
    
            If ``False``, then retries are disabled and any exception is raised
            immediately. Also, instead of raising a MaxRetryError on redirects,
            the redirect response will be returned.
    
        :type retries: :class:`~urllib3.util.retry.Retry`, False, or an int.
    
        :param redirect:
            If True, automatically handle redirects (status codes 301, 302,
            303, 307, 308). Each redirect counts as a retry. Disabling retries
            will disable redirect, too.
    
        :param assert_same_host:
            If ``True``, will make sure that the host of the pool requests is
            consistent else will raise HostChangedError. When ``False``, you can
            use the pool on an HTTP proxy and request foreign hosts.
    
        :param timeout:
            If specified, overrides the default timeout for this one
            request. It may be a float (in seconds) or an instance of
            :class:`urllib3.util.Timeout`.
    
        :param pool_timeout:
            If set and the pool is set to block=True, then this method will
            block for ``pool_timeout`` seconds and raise EmptyPoolError if no
            connection is available within the time period.
    
        :param release_conn:
            If False, then the urlopen call will not release the connection
            back into the pool once a response is received (but will release if
            you read the entire contents of the response such as when
            `preload_content=True`). This is useful if you're not preloading
            the response's content immediately. You will need to call
            ``r.release_conn()`` on the response ``r`` to return the connection
            back into the pool. If None, it takes the value of
            ``response_kw.get('preload_content', True)``.
    
        :param chunked:
            If True, urllib3 will send the body using chunked transfer
            encoding. Otherwise, urllib3 will send the body using the standard
            content-length form. Defaults to False.
    
        :param int body_pos:
            Position to seek to in file-like body in the event of a retry or
            redirect. Typically this won't need to be set because urllib3 will
            auto-populate the value when needed.
    
        :param \\**response_kw:
            Additional parameters are passed to
            :meth:`urllib3.response.HTTPResponse.from_httplib`
        """
    
        parsed_url = parse_url(url)
        destination_scheme = parsed_url.scheme
    
        if headers is None:
            headers = self.headers
    
        if not isinstance(retries, Retry):
            retries = Retry.from_int(retries, redirect=redirect, default=self.retries)
    
        if release_conn is None:
            release_conn = response_kw.get("preload_content", True)
    
        # Check host
        if assert_same_host and not self.is_same_host(url):
            raise HostChangedError(self, url, retries)
    
        # Ensure that the URL we're connecting to is properly encoded
        if url.startswith("/"):
            url = six.ensure_str(_encode_target(url))
        else:
            url = six.ensure_str(parsed_url.url)
    
        conn = None
    
        # Track whether `conn` needs to be released before
        # returning/raising/recursing. Update this variable if necessary, and
        # leave `release_conn` constant throughout the function. That way, if
        # the function recurses, the original value of `release_conn` will be
        # passed down into the recursive call, and its value will be respected.
        #
        # See issue #651 [1] for details.
        #
        # [1] <https://github.com/urllib3/urllib3/issues/651>
        release_this_conn = release_conn
    
        http_tunnel_required = connection_requires_http_tunnel(
            self.proxy, self.proxy_config, destination_scheme
        )
    
        # Merge the proxy headers. Only done when not using HTTP CONNECT. We
        # have to copy the headers dict so we can safely change it without those
        # changes being reflected in anyone else's copy.
        if not http_tunnel_required:
            headers = headers.copy()
            headers.update(self.proxy_headers)
    
        # Must keep the exception bound to a separate variable or else Python 3
        # complains about UnboundLocalError.
        err = None
    
        # Keep track of whether we cleanly exited the except block. This
        # ensures we do proper cleanup in finally.
        clean_exit = False
    
        # Rewind body position, if needed. Record current position
        # for future rewinds in the event of a redirect/retry.
        body_pos = set_file_position(body, body_pos)
    
        try:
            # Request a connection from the queue.
            timeout_obj = self._get_timeout(timeout)
            conn = self._get_conn(timeout=pool_timeout)
    
            conn.timeout = timeout_obj.connect_timeout
    
            is_new_proxy_conn = self.proxy is not None and not getattr(
                conn, "sock", None
            )
            if is_new_proxy_conn and http_tunnel_required:
                self._prepare_proxy(conn)
    
            # Make the request on the httplib connection object.
>           httplib_response = self._make_request(
                conn,
                method,
                url,
                timeout=timeout_obj,
                body=body,
                headers=headers,
                chunked=chunked,
            )

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py:699: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754a5f2310>
conn = <urllib3.connection.HTTPSConnection object at 0x7f754a52ec10>
method = 'POST'
url = '/api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf'
timeout = Timeout(connect=None, read=None, total=None), chunked = False
httplib_request_kw = {'body': b'{"query": {"term": {"pennsieve.identifier.aggregate": "55"}}}', 'headers': {'User-Agent': 'python-requests/...ip, deflate', 'Accept': '*/*', 'Connection': 'keep-alive', 'Content-Length': '61', 'Content-Type': 'application/json'}}
timeout_obj = Timeout(connect=None, read=None, total=None)

    def _make_request(
        self, conn, method, url, timeout=_Default, chunked=False, **httplib_request_kw
    ):
        """
        Perform a request on a given urllib connection object taken from our
        pool.
    
        :param conn:
            a connection from one of our connection pools
    
        :param timeout:
            Socket timeout in seconds for the request. This can be a
            float or integer, which will set the same timeout value for
            the socket connect and the socket read, or an instance of
            :class:`urllib3.util.Timeout`, which gives you more fine-grained
            control over your timeouts.
        """
        self.num_requests += 1
    
        timeout_obj = self._get_timeout(timeout)
        timeout_obj.start_connect()
        conn.timeout = timeout_obj.connect_timeout
    
        # Trigger any extra validation we need to do.
        try:
>           self._validate_conn(conn)

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py:382: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754a5f2310>
conn = <urllib3.connection.HTTPSConnection object at 0x7f754a52ec10>

    def _validate_conn(self, conn):
        """
        Called right before a request is made, after the socket is created.
        """
        super(HTTPSConnectionPool, self)._validate_conn(conn)
    
        # Force connect early to allow us to validate the connection.
        if not getattr(conn, "sock", None):  # AppEngine might not have  `.sock`
>           conn.connect()

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py:1010: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connection.HTTPSConnection object at 0x7f754a52ec10>

    def connect(self):
        # Add certificate verification
>       conn = self._new_conn()

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connection.py:353: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connection.HTTPSConnection object at 0x7f754a52ec10>

    def _new_conn(self):
        """Establish a socket connection and set nodelay settings on it.
    
        :return: New socket connection.
        """
        extra_kw = {}
        if self.source_address:
            extra_kw["source_address"] = self.source_address
    
        if self.socket_options:
            extra_kw["socket_options"] = self.socket_options
    
        try:
            conn = connection.create_connection(
                (self._dns_host, self.port), self.timeout, **extra_kw
            )
    
        except SocketTimeout:
            raise ConnectTimeoutError(
                self,
                "Connection to %s timed out. (connect timeout=%s)"
                % (self.host, self.timeout),
            )
    
        except SocketError as e:
>           raise NewConnectionError(
                self, "Failed to establish a new connection: %s" % e
            )
E           urllib3.exceptions.NewConnectionError: <urllib3.connection.HTTPSConnection object at 0x7f754a52ec10>: Failed to establish a new connection: [Errno 110] Connection timed out

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connection.py:181: NewConnectionError

During handling of the above exception, another exception occurred:

self = <requests.adapters.HTTPAdapter object at 0x7f754a5f23a0>
request = <PreparedRequest [POST]>, stream = False
timeout = Timeout(connect=None, read=None, total=None), verify = True
cert = None, proxies = OrderedDict()

    def send(self, request, stream=False, timeout=None, verify=True, cert=None, proxies=None):
        """Sends PreparedRequest object. Returns Response object.
    
        :param request: The :class:`PreparedRequest <PreparedRequest>` being sent.
        :param stream: (optional) Whether to stream the request content.
        :param timeout: (optional) How long to wait for the server to send
            data before giving up, as a float, or a :ref:`(connect timeout,
            read timeout) <timeouts>` tuple.
        :type timeout: float or tuple or urllib3 Timeout object
        :param verify: (optional) Either a boolean, in which case it controls whether
            we verify the server's TLS certificate, or a string, in which case it
            must be a path to a CA bundle to use
        :param cert: (optional) Any user-provided SSL certificate to be trusted.
        :param proxies: (optional) The proxies dictionary to apply to the request.
        :rtype: requests.Response
        """
    
        try:
            conn = self.get_connection(request.url, proxies)
        except LocationValueError as e:
            raise InvalidURL(e, request=request)
    
        self.cert_verify(conn, request.url, verify, cert)
        url = self.request_url(request, proxies)
        self.add_headers(request, stream=stream, timeout=timeout, verify=verify, cert=cert, proxies=proxies)
    
        chunked = not (request.body is None or 'Content-Length' in request.headers)
    
        if isinstance(timeout, tuple):
            try:
                connect, read = timeout
                timeout = TimeoutSauce(connect=connect, read=read)
            except ValueError as e:
                # this may raise a string formatting error.
                err = ("Invalid timeout {}. Pass a (connect, read) "
                       "timeout tuple, or a single float to set "
                       "both timeouts to the same value".format(timeout))
                raise ValueError(err)
        elif isinstance(timeout, TimeoutSauce):
            pass
        else:
            timeout = TimeoutSauce(connect=timeout, read=timeout)
    
        try:
            if not chunked:
>               resp = conn.urlopen(
                    method=request.method,
                    url=url,
                    body=request.body,
                    headers=request.headers,
                    redirect=False,
                    assert_same_host=False,
                    preload_content=False,
                    decode_content=False,
                    retries=self.max_retries,
                    timeout=timeout
                )

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/adapters.py:439: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754a5f2310>
method = 'POST'
url = '/api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf'
body = b'{"query": {"term": {"pennsieve.identifier.aggregate": "55"}}}'
headers = {'User-Agent': 'python-requests/2.25.1', 'Accept-Encoding': 'gzip, deflate', 'Accept': '*/*', 'Connection': 'keep-alive', 'Content-Length': '61', 'Content-Type': 'application/json'}
retries = Retry(total=0, connect=None, read=False, redirect=None, status=None)
redirect = False, assert_same_host = False
timeout = Timeout(connect=None, read=None, total=None), pool_timeout = None
release_conn = False, chunked = False, body_pos = None
response_kw = {'decode_content': False, 'preload_content': False}
parsed_url = Url(scheme=None, auth=None, host=None, port=None, path='/api/1/elastic/SPARC_PortalDatasets_dev/_search', query='api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf', fragment=None)
destination_scheme = None, conn = None, release_this_conn = True
http_tunnel_required = False, err = None, clean_exit = False

    def urlopen(
        self,
        method,
        url,
        body=None,
        headers=None,
        retries=None,
        redirect=True,
        assert_same_host=True,
        timeout=_Default,
        pool_timeout=None,
        release_conn=None,
        chunked=False,
        body_pos=None,
        **response_kw
    ):
        """
        Get a connection from the pool and perform an HTTP request. This is the
        lowest level call for making a request, so you'll need to specify all
        the raw details.
    
        .. note::
    
           More commonly, it's appropriate to use a convenience method provided
           by :class:`.RequestMethods`, such as :meth:`request`.
    
        .. note::
    
           `release_conn` will only behave as expected if
           `preload_content=False` because we want to make
           `preload_content=False` the default behaviour someday soon without
           breaking backwards compatibility.
    
        :param method:
            HTTP request method (such as GET, POST, PUT, etc.)
    
        :param url:
            The URL to perform the request on.
    
        :param body:
            Data to send in the request body, either :class:`str`, :class:`bytes`,
            an iterable of :class:`str`/:class:`bytes`, or a file-like object.
    
        :param headers:
            Dictionary of custom headers to send, such as User-Agent,
            If-None-Match, etc. If None, pool headers are used. If provided,
            these headers completely replace any pool-specific headers.
    
        :param retries:
            Configure the number of retries to allow before raising a
            :class:`~urllib3.exceptions.MaxRetryError` exception.
    
            Pass ``None`` to retry until you receive a response. Pass a
            :class:`~urllib3.util.retry.Retry` object for fine-grained control
            over different types of retries.
            Pass an integer number to retry connection errors that many times,
            but no other types of errors. Pass zero to never retry.
    
            If ``False``, then retries are disabled and any exception is raised
            immediately. Also, instead of raising a MaxRetryError on redirects,
            the redirect response will be returned.
    
        :type retries: :class:`~urllib3.util.retry.Retry`, False, or an int.
    
        :param redirect:
            If True, automatically handle redirects (status codes 301, 302,
            303, 307, 308). Each redirect counts as a retry. Disabling retries
            will disable redirect, too.
    
        :param assert_same_host:
            If ``True``, will make sure that the host of the pool requests is
            consistent else will raise HostChangedError. When ``False``, you can
            use the pool on an HTTP proxy and request foreign hosts.
    
        :param timeout:
            If specified, overrides the default timeout for this one
            request. It may be a float (in seconds) or an instance of
            :class:`urllib3.util.Timeout`.
    
        :param pool_timeout:
            If set and the pool is set to block=True, then this method will
            block for ``pool_timeout`` seconds and raise EmptyPoolError if no
            connection is available within the time period.
    
        :param release_conn:
            If False, then the urlopen call will not release the connection
            back into the pool once a response is received (but will release if
            you read the entire contents of the response such as when
            `preload_content=True`). This is useful if you're not preloading
            the response's content immediately. You will need to call
            ``r.release_conn()`` on the response ``r`` to return the connection
            back into the pool. If None, it takes the value of
            ``response_kw.get('preload_content', True)``.
    
        :param chunked:
            If True, urllib3 will send the body using chunked transfer
            encoding. Otherwise, urllib3 will send the body using the standard
            content-length form. Defaults to False.
    
        :param int body_pos:
            Position to seek to in file-like body in the event of a retry or
            redirect. Typically this won't need to be set because urllib3 will
            auto-populate the value when needed.
    
        :param \\**response_kw:
            Additional parameters are passed to
            :meth:`urllib3.response.HTTPResponse.from_httplib`
        """
    
        parsed_url = parse_url(url)
        destination_scheme = parsed_url.scheme
    
        if headers is None:
            headers = self.headers
    
        if not isinstance(retries, Retry):
            retries = Retry.from_int(retries, redirect=redirect, default=self.retries)
    
        if release_conn is None:
            release_conn = response_kw.get("preload_content", True)
    
        # Check host
        if assert_same_host and not self.is_same_host(url):
            raise HostChangedError(self, url, retries)
    
        # Ensure that the URL we're connecting to is properly encoded
        if url.startswith("/"):
            url = six.ensure_str(_encode_target(url))
        else:
            url = six.ensure_str(parsed_url.url)
    
        conn = None
    
        # Track whether `conn` needs to be released before
        # returning/raising/recursing. Update this variable if necessary, and
        # leave `release_conn` constant throughout the function. That way, if
        # the function recurses, the original value of `release_conn` will be
        # passed down into the recursive call, and its value will be respected.
        #
        # See issue #651 [1] for details.
        #
        # [1] <https://github.com/urllib3/urllib3/issues/651>
        release_this_conn = release_conn
    
        http_tunnel_required = connection_requires_http_tunnel(
            self.proxy, self.proxy_config, destination_scheme
        )
    
        # Merge the proxy headers. Only done when not using HTTP CONNECT. We
        # have to copy the headers dict so we can safely change it without those
        # changes being reflected in anyone else's copy.
        if not http_tunnel_required:
            headers = headers.copy()
            headers.update(self.proxy_headers)
    
        # Must keep the exception bound to a separate variable or else Python 3
        # complains about UnboundLocalError.
        err = None
    
        # Keep track of whether we cleanly exited the except block. This
        # ensures we do proper cleanup in finally.
        clean_exit = False
    
        # Rewind body position, if needed. Record current position
        # for future rewinds in the event of a redirect/retry.
        body_pos = set_file_position(body, body_pos)
    
        try:
            # Request a connection from the queue.
            timeout_obj = self._get_timeout(timeout)
            conn = self._get_conn(timeout=pool_timeout)
    
            conn.timeout = timeout_obj.connect_timeout
    
            is_new_proxy_conn = self.proxy is not None and not getattr(
                conn, "sock", None
            )
            if is_new_proxy_conn and http_tunnel_required:
                self._prepare_proxy(conn)
    
            # Make the request on the httplib connection object.
            httplib_response = self._make_request(
                conn,
                method,
                url,
                timeout=timeout_obj,
                body=body,
                headers=headers,
                chunked=chunked,
            )
    
            # If we're going to release the connection in ``finally:``, then
            # the response doesn't need to know about the connection. Otherwise
            # it will also try to release it and we'll have a double-release
            # mess.
            response_conn = conn if not release_conn else None
    
            # Pass method to Response for length checking
            response_kw["request_method"] = method
    
            # Import httplib's response into our own wrapper object
            response = self.ResponseCls.from_httplib(
                httplib_response,
                pool=self,
                connection=response_conn,
                retries=retries,
                **response_kw
            )
    
            # Everything went great!
            clean_exit = True
    
        except EmptyPoolError:
            # Didn't get a connection from the pool, no need to clean up
            clean_exit = True
            release_this_conn = False
            raise
    
        except (
            TimeoutError,
            HTTPException,
            SocketError,
            ProtocolError,
            BaseSSLError,
            SSLError,
            CertificateError,
        ) as e:
            # Discard the connection for these exceptions. It will be
            # replaced during the next _get_conn() call.
            clean_exit = False
            if isinstance(e, (BaseSSLError, CertificateError)):
                e = SSLError(e)
            elif isinstance(e, (SocketError, NewConnectionError)) and self.proxy:
                e = ProxyError("Cannot connect to proxy.", e)
            elif isinstance(e, (SocketError, HTTPException)):
                e = ProtocolError("Connection aborted.", e)
    
>           retries = retries.increment(
                method, url, error=e, _pool=self, _stacktrace=sys.exc_info()[2]
            )

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py:755: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = Retry(total=0, connect=None, read=False, redirect=None, status=None)
method = 'POST'
url = '/api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf'
response = None
error = NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7f754a52ec10>: Failed to establish a new connection: [Errno 110] Connection timed out')
_pool = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754a5f2310>
_stacktrace = <traceback object at 0x7f754a61dfc0>

    def increment(
        self,
        method=None,
        url=None,
        response=None,
        error=None,
        _pool=None,
        _stacktrace=None,
    ):
        """Return a new Retry object with incremented retry counters.
    
        :param response: A response object, or None, if the server did not
            return a response.
        :type response: :class:`~urllib3.response.HTTPResponse`
        :param Exception error: An error encountered during the request, or
            None if the response was received successfully.
    
        :return: A new ``Retry`` object.
        """
        if self.total is False and error:
            # Disabled, indicate to re-raise the error.
            raise six.reraise(type(error), error, _stacktrace)
    
        total = self.total
        if total is not None:
            total -= 1
    
        connect = self.connect
        read = self.read
        redirect = self.redirect
        status_count = self.status
        other = self.other
        cause = "unknown"
        status = None
        redirect_location = None
    
        if error and self._is_connection_error(error):
            # Connect retry?
            if connect is False:
                raise six.reraise(type(error), error, _stacktrace)
            elif connect is not None:
                connect -= 1
    
        elif error and self._is_read_error(error):
            # Read retry?
            if read is False or not self._is_method_retryable(method):
                raise six.reraise(type(error), error, _stacktrace)
            elif read is not None:
                read -= 1
    
        elif error:
            # Other retry?
            if other is not None:
                other -= 1
    
        elif response and response.get_redirect_location():
            # Redirect retry?
            if redirect is not None:
                redirect -= 1
            cause = "too many redirects"
            redirect_location = response.get_redirect_location()
            status = response.status
    
        else:
            # Incrementing because of a server error like a 500 in
            # status_forcelist and the given method is in the allowed_methods
            cause = ResponseError.GENERIC_ERROR
            if response and response.status:
                if status_count is not None:
                    status_count -= 1
                cause = ResponseError.SPECIFIC_ERROR.format(status_code=response.status)
                status = response.status
    
        history = self.history + (
            RequestHistory(method, url, error, status, redirect_location),
        )
    
        new_retry = self.new(
            total=total,
            connect=connect,
            read=read,
            redirect=redirect,
            status=status_count,
            other=other,
            history=history,
        )
    
        if new_retry.is_exhausted():
>           raise MaxRetryError(_pool, url, error or ResponseError(cause))
E           urllib3.exceptions.MaxRetryError: HTTPSConnectionPool(host='scicrunch.org', port=443): Max retries exceeded with url: /api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7f754a52ec10>: Failed to establish a new connection: [Errno 110] Connection timed out'))

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/util/retry.py:574: MaxRetryError

During handling of the above exception, another exception occurred:

client = <FlaskClient <Flask 'app.main'>>

    def test_scicrunch_multiple_dataset_doi(client):
        # Testing with dataset 55 and 68
>       run_doi_test_1 = check_doi_status(client, "55", '10.26275/pzek-91wx')

tests/test_scicrunch.py:84: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
tests/test_scicrunch.py:53: in check_doi_status
    r = client.get('/dataset_info/using_pennsieve_identifier', query_string={'identifier': dataset_id})
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/werkzeug/test.py:1029: in get
    return self.open(*args, **kw)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/testing.py:222: in open
    return Client.open(
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/werkzeug/test.py:993: in open
    response = self.run_wsgi_app(environ.copy(), buffered=buffered)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/werkzeug/test.py:884: in run_wsgi_app
    rv = run_wsgi_app(self.application, environ, buffered=buffered)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/werkzeug/test.py:1119: in run_wsgi_app
    app_rv = app(environ, start_response)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:2463: in __call__
    return self.wsgi_app(environ, start_response)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:2449: in wsgi_app
    response = self.handle_exception(e)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask_cors/extension.py:161: in wrapped_function
    return cors_after_request(app.make_response(f(*args, **kwargs)))
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1866: in handle_exception
    reraise(exc_type, exc_value, tb)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/_compat.py:39: in reraise
    raise value
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:2446: in wsgi_app
    response = self.full_dispatch_request()
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1951: in full_dispatch_request
    rv = self.handle_user_exception(e)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask_cors/extension.py:161: in wrapped_function
    return cors_after_request(app.make_response(f(*args, **kwargs)))
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1820: in handle_user_exception
    reraise(exc_type, exc_value, tb)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/_compat.py:39: in reraise
    raise value
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1949: in full_dispatch_request
    rv = self.dispatch_request()
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1935: in dispatch_request
    return self.view_functions[rule.endpoint](**req.view_args)
app/main.py:602: in get_dataset_info_pennsieve_identifier
    return reform_dataset_results(dataset_search(query))
app/main.py:663: in dataset_search
    response = requests.post(f'{Config.SCI_CRUNCH_HOST}/_search',
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/api.py:119: in post
    return request('post', url, data=data, json=json, **kwargs)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/api.py:61: in request
    return session.request(method=method, url=url, **kwargs)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/sessions.py:542: in request
    resp = self.send(prep, **send_kwargs)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/sessions.py:655: in send
    r = adapter.send(request, **kwargs)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <requests.adapters.HTTPAdapter object at 0x7f754a5f23a0>
request = <PreparedRequest [POST]>, stream = False
timeout = Timeout(connect=None, read=None, total=None), verify = True
cert = None, proxies = OrderedDict()

    def send(self, request, stream=False, timeout=None, verify=True, cert=None, proxies=None):
        """Sends PreparedRequest object. Returns Response object.
    
        :param request: The :class:`PreparedRequest <PreparedRequest>` being sent.
        :param stream: (optional) Whether to stream the request content.
        :param timeout: (optional) How long to wait for the server to send
            data before giving up, as a float, or a :ref:`(connect timeout,
            read timeout) <timeouts>` tuple.
        :type timeout: float or tuple or urllib3 Timeout object
        :param verify: (optional) Either a boolean, in which case it controls whether
            we verify the server's TLS certificate, or a string, in which case it
            must be a path to a CA bundle to use
        :param cert: (optional) Any user-provided SSL certificate to be trusted.
        :param proxies: (optional) The proxies dictionary to apply to the request.
        :rtype: requests.Response
        """
    
        try:
            conn = self.get_connection(request.url, proxies)
        except LocationValueError as e:
            raise InvalidURL(e, request=request)
    
        self.cert_verify(conn, request.url, verify, cert)
        url = self.request_url(request, proxies)
        self.add_headers(request, stream=stream, timeout=timeout, verify=verify, cert=cert, proxies=proxies)
    
        chunked = not (request.body is None or 'Content-Length' in request.headers)
    
        if isinstance(timeout, tuple):
            try:
                connect, read = timeout
                timeout = TimeoutSauce(connect=connect, read=read)
            except ValueError as e:
                # this may raise a string formatting error.
                err = ("Invalid timeout {}. Pass a (connect, read) "
                       "timeout tuple, or a single float to set "
                       "both timeouts to the same value".format(timeout))
                raise ValueError(err)
        elif isinstance(timeout, TimeoutSauce):
            pass
        else:
            timeout = TimeoutSauce(connect=timeout, read=timeout)
    
        try:
            if not chunked:
                resp = conn.urlopen(
                    method=request.method,
                    url=url,
                    body=request.body,
                    headers=request.headers,
                    redirect=False,
                    assert_same_host=False,
                    preload_content=False,
                    decode_content=False,
                    retries=self.max_retries,
                    timeout=timeout
                )
    
            # Send the request.
            else:
                if hasattr(conn, 'proxy_pool'):
                    conn = conn.proxy_pool
    
                low_conn = conn._get_conn(timeout=DEFAULT_POOL_TIMEOUT)
    
                try:
                    low_conn.putrequest(request.method,
                                        url,
                                        skip_accept_encoding=True)
    
                    for header, value in request.headers.items():
                        low_conn.putheader(header, value)
    
                    low_conn.endheaders()
    
                    for i in request.body:
                        low_conn.send(hex(len(i))[2:].encode('utf-8'))
                        low_conn.send(b'\r\n')
                        low_conn.send(i)
                        low_conn.send(b'\r\n')
                    low_conn.send(b'0\r\n\r\n')
    
                    # Receive the response from the server
                    try:
                        # For Python 2.7, use buffering of HTTP responses
                        r = low_conn.getresponse(buffering=True)
                    except TypeError:
                        # For compatibility with Python 3.3+
                        r = low_conn.getresponse()
    
                    resp = HTTPResponse.from_httplib(
                        r,
                        pool=conn,
                        connection=low_conn,
                        preload_content=False,
                        decode_content=False
                    )
                except:
                    # If we hit any problems here, clean up the connection.
                    # Then, reraise so that we can handle the actual exception.
                    low_conn.close()
                    raise
    
        except (ProtocolError, socket.error) as err:
            raise ConnectionError(err, request=request)
    
        except MaxRetryError as e:
            if isinstance(e.reason, ConnectTimeoutError):
                # TODO: Remove this in 3.0.0: see #2811
                if not isinstance(e.reason, NewConnectionError):
                    raise ConnectTimeout(e, request=request)
    
            if isinstance(e.reason, ResponseError):
                raise RetryError(e, request=request)
    
            if isinstance(e.reason, _ProxyError):
                raise ProxyError(e, request=request)
    
            if isinstance(e.reason, _SSLError):
                # This branch is for urllib3 v1.22 and later.
                raise SSLError(e, request=request)
    
>           raise ConnectionError(e, request=request)
E           requests.exceptions.ConnectionError: HTTPSConnectionPool(host='scicrunch.org', port=443): Max retries exceeded with url: /api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7f754a52ec10>: Failed to establish a new connection: [Errno 110] Connection timed out'))

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/adapters.py:516: ConnectionError
_____________________ test_scicrunch_multiple_dataset_ids ______________________

self = <urllib3.connection.HTTPSConnection object at 0x7f754a6e75e0>

    def _new_conn(self):
        """Establish a socket connection and set nodelay settings on it.
    
        :return: New socket connection.
        """
        extra_kw = {}
        if self.source_address:
            extra_kw["source_address"] = self.source_address
    
        if self.socket_options:
            extra_kw["socket_options"] = self.socket_options
    
        try:
>           conn = connection.create_connection(
                (self._dns_host, self.port), self.timeout, **extra_kw
            )

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connection.py:169: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

address = ('scicrunch.org', 443), timeout = None, source_address = None
socket_options = [(6, 1, 1)]

    def create_connection(
        address,
        timeout=socket._GLOBAL_DEFAULT_TIMEOUT,
        source_address=None,
        socket_options=None,
    ):
        """Connect to *address* and return the socket object.
    
        Convenience function.  Connect to *address* (a 2-tuple ``(host,
        port)``) and return the socket object.  Passing the optional
        *timeout* parameter will set the timeout on the socket instance
        before attempting to connect.  If no *timeout* is supplied, the
        global default timeout setting returned by :func:`socket.getdefaulttimeout`
        is used.  If *source_address* is set it must be a tuple of (host, port)
        for the socket to bind as a source address before making the connection.
        An host of '' or port 0 tells the OS to use the default.
        """
    
        host, port = address
        if host.startswith("["):
            host = host.strip("[]")
        err = None
    
        # Using the value from allowed_gai_family() in the context of getaddrinfo lets
        # us select whether to work with IPv4 DNS records, IPv6 records, or both.
        # The original create_connection function always returns all records.
        family = allowed_gai_family()
    
        try:
            host.encode("idna")
        except UnicodeError:
            return six.raise_from(
                LocationParseError(u"'%s', label empty or too long" % host), None
            )
    
        for res in socket.getaddrinfo(host, port, family, socket.SOCK_STREAM):
            af, socktype, proto, canonname, sa = res
            sock = None
            try:
                sock = socket.socket(af, socktype, proto)
    
                # If provided, set socket level options before connecting.
                _set_socket_options(sock, socket_options)
    
                if timeout is not socket._GLOBAL_DEFAULT_TIMEOUT:
                    sock.settimeout(timeout)
                if source_address:
                    sock.bind(source_address)
                sock.connect(sa)
                return sock
    
            except socket.error as e:
                err = e
                if sock is not None:
                    sock.close()
                    sock = None
    
        if err is not None:
>           raise err

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/util/connection.py:96: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

address = ('scicrunch.org', 443), timeout = None, source_address = None
socket_options = [(6, 1, 1)]

    def create_connection(
        address,
        timeout=socket._GLOBAL_DEFAULT_TIMEOUT,
        source_address=None,
        socket_options=None,
    ):
        """Connect to *address* and return the socket object.
    
        Convenience function.  Connect to *address* (a 2-tuple ``(host,
        port)``) and return the socket object.  Passing the optional
        *timeout* parameter will set the timeout on the socket instance
        before attempting to connect.  If no *timeout* is supplied, the
        global default timeout setting returned by :func:`socket.getdefaulttimeout`
        is used.  If *source_address* is set it must be a tuple of (host, port)
        for the socket to bind as a source address before making the connection.
        An host of '' or port 0 tells the OS to use the default.
        """
    
        host, port = address
        if host.startswith("["):
            host = host.strip("[]")
        err = None
    
        # Using the value from allowed_gai_family() in the context of getaddrinfo lets
        # us select whether to work with IPv4 DNS records, IPv6 records, or both.
        # The original create_connection function always returns all records.
        family = allowed_gai_family()
    
        try:
            host.encode("idna")
        except UnicodeError:
            return six.raise_from(
                LocationParseError(u"'%s', label empty or too long" % host), None
            )
    
        for res in socket.getaddrinfo(host, port, family, socket.SOCK_STREAM):
            af, socktype, proto, canonname, sa = res
            sock = None
            try:
                sock = socket.socket(af, socktype, proto)
    
                # If provided, set socket level options before connecting.
                _set_socket_options(sock, socket_options)
    
                if timeout is not socket._GLOBAL_DEFAULT_TIMEOUT:
                    sock.settimeout(timeout)
                if source_address:
                    sock.bind(source_address)
>               sock.connect(sa)
E               TimeoutError: [Errno 110] Connection timed out

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/util/connection.py:86: TimeoutError

During handling of the above exception, another exception occurred:

self = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754a587880>
method = 'POST'
url = '/api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf'
body = b'{"size": 999, "query": {"terms": {"pennsieve.identifier": ["55", "68"]}}}'
headers = {'User-Agent': 'python-requests/2.25.1', 'Accept-Encoding': 'gzip, deflate', 'Accept': '*/*', 'Connection': 'keep-alive', 'Content-Length': '73', 'Content-Type': 'application/json'}
retries = Retry(total=0, connect=None, read=False, redirect=None, status=None)
redirect = False, assert_same_host = False
timeout = Timeout(connect=None, read=None, total=None), pool_timeout = None
release_conn = False, chunked = False, body_pos = None
response_kw = {'decode_content': False, 'preload_content': False}
parsed_url = Url(scheme=None, auth=None, host=None, port=None, path='/api/1/elastic/SPARC_PortalDatasets_dev/_search', query='api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf', fragment=None)
destination_scheme = None, conn = None, release_this_conn = True
http_tunnel_required = False, err = None, clean_exit = False

    def urlopen(
        self,
        method,
        url,
        body=None,
        headers=None,
        retries=None,
        redirect=True,
        assert_same_host=True,
        timeout=_Default,
        pool_timeout=None,
        release_conn=None,
        chunked=False,
        body_pos=None,
        **response_kw
    ):
        """
        Get a connection from the pool and perform an HTTP request. This is the
        lowest level call for making a request, so you'll need to specify all
        the raw details.
    
        .. note::
    
           More commonly, it's appropriate to use a convenience method provided
           by :class:`.RequestMethods`, such as :meth:`request`.
    
        .. note::
    
           `release_conn` will only behave as expected if
           `preload_content=False` because we want to make
           `preload_content=False` the default behaviour someday soon without
           breaking backwards compatibility.
    
        :param method:
            HTTP request method (such as GET, POST, PUT, etc.)
    
        :param url:
            The URL to perform the request on.
    
        :param body:
            Data to send in the request body, either :class:`str`, :class:`bytes`,
            an iterable of :class:`str`/:class:`bytes`, or a file-like object.
    
        :param headers:
            Dictionary of custom headers to send, such as User-Agent,
            If-None-Match, etc. If None, pool headers are used. If provided,
            these headers completely replace any pool-specific headers.
    
        :param retries:
            Configure the number of retries to allow before raising a
            :class:`~urllib3.exceptions.MaxRetryError` exception.
    
            Pass ``None`` to retry until you receive a response. Pass a
            :class:`~urllib3.util.retry.Retry` object for fine-grained control
            over different types of retries.
            Pass an integer number to retry connection errors that many times,
            but no other types of errors. Pass zero to never retry.
    
            If ``False``, then retries are disabled and any exception is raised
            immediately. Also, instead of raising a MaxRetryError on redirects,
            the redirect response will be returned.
    
        :type retries: :class:`~urllib3.util.retry.Retry`, False, or an int.
    
        :param redirect:
            If True, automatically handle redirects (status codes 301, 302,
            303, 307, 308). Each redirect counts as a retry. Disabling retries
            will disable redirect, too.
    
        :param assert_same_host:
            If ``True``, will make sure that the host of the pool requests is
            consistent else will raise HostChangedError. When ``False``, you can
            use the pool on an HTTP proxy and request foreign hosts.
    
        :param timeout:
            If specified, overrides the default timeout for this one
            request. It may be a float (in seconds) or an instance of
            :class:`urllib3.util.Timeout`.
    
        :param pool_timeout:
            If set and the pool is set to block=True, then this method will
            block for ``pool_timeout`` seconds and raise EmptyPoolError if no
            connection is available within the time period.
    
        :param release_conn:
            If False, then the urlopen call will not release the connection
            back into the pool once a response is received (but will release if
            you read the entire contents of the response such as when
            `preload_content=True`). This is useful if you're not preloading
            the response's content immediately. You will need to call
            ``r.release_conn()`` on the response ``r`` to return the connection
            back into the pool. If None, it takes the value of
            ``response_kw.get('preload_content', True)``.
    
        :param chunked:
            If True, urllib3 will send the body using chunked transfer
            encoding. Otherwise, urllib3 will send the body using the standard
            content-length form. Defaults to False.
    
        :param int body_pos:
            Position to seek to in file-like body in the event of a retry or
            redirect. Typically this won't need to be set because urllib3 will
            auto-populate the value when needed.
    
        :param \\**response_kw:
            Additional parameters are passed to
            :meth:`urllib3.response.HTTPResponse.from_httplib`
        """
    
        parsed_url = parse_url(url)
        destination_scheme = parsed_url.scheme
    
        if headers is None:
            headers = self.headers
    
        if not isinstance(retries, Retry):
            retries = Retry.from_int(retries, redirect=redirect, default=self.retries)
    
        if release_conn is None:
            release_conn = response_kw.get("preload_content", True)
    
        # Check host
        if assert_same_host and not self.is_same_host(url):
            raise HostChangedError(self, url, retries)
    
        # Ensure that the URL we're connecting to is properly encoded
        if url.startswith("/"):
            url = six.ensure_str(_encode_target(url))
        else:
            url = six.ensure_str(parsed_url.url)
    
        conn = None
    
        # Track whether `conn` needs to be released before
        # returning/raising/recursing. Update this variable if necessary, and
        # leave `release_conn` constant throughout the function. That way, if
        # the function recurses, the original value of `release_conn` will be
        # passed down into the recursive call, and its value will be respected.
        #
        # See issue #651 [1] for details.
        #
        # [1] <https://github.com/urllib3/urllib3/issues/651>
        release_this_conn = release_conn
    
        http_tunnel_required = connection_requires_http_tunnel(
            self.proxy, self.proxy_config, destination_scheme
        )
    
        # Merge the proxy headers. Only done when not using HTTP CONNECT. We
        # have to copy the headers dict so we can safely change it without those
        # changes being reflected in anyone else's copy.
        if not http_tunnel_required:
            headers = headers.copy()
            headers.update(self.proxy_headers)
    
        # Must keep the exception bound to a separate variable or else Python 3
        # complains about UnboundLocalError.
        err = None
    
        # Keep track of whether we cleanly exited the except block. This
        # ensures we do proper cleanup in finally.
        clean_exit = False
    
        # Rewind body position, if needed. Record current position
        # for future rewinds in the event of a redirect/retry.
        body_pos = set_file_position(body, body_pos)
    
        try:
            # Request a connection from the queue.
            timeout_obj = self._get_timeout(timeout)
            conn = self._get_conn(timeout=pool_timeout)
    
            conn.timeout = timeout_obj.connect_timeout
    
            is_new_proxy_conn = self.proxy is not None and not getattr(
                conn, "sock", None
            )
            if is_new_proxy_conn and http_tunnel_required:
                self._prepare_proxy(conn)
    
            # Make the request on the httplib connection object.
>           httplib_response = self._make_request(
                conn,
                method,
                url,
                timeout=timeout_obj,
                body=body,
                headers=headers,
                chunked=chunked,
            )

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py:699: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754a587880>
conn = <urllib3.connection.HTTPSConnection object at 0x7f754a6e75e0>
method = 'POST'
url = '/api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf'
timeout = Timeout(connect=None, read=None, total=None), chunked = False
httplib_request_kw = {'body': b'{"size": 999, "query": {"terms": {"pennsieve.identifier": ["55", "68"]}}}', 'headers': {'User-Agent': 'pyth...ip, deflate', 'Accept': '*/*', 'Connection': 'keep-alive', 'Content-Length': '73', 'Content-Type': 'application/json'}}
timeout_obj = Timeout(connect=None, read=None, total=None)

    def _make_request(
        self, conn, method, url, timeout=_Default, chunked=False, **httplib_request_kw
    ):
        """
        Perform a request on a given urllib connection object taken from our
        pool.
    
        :param conn:
            a connection from one of our connection pools
    
        :param timeout:
            Socket timeout in seconds for the request. This can be a
            float or integer, which will set the same timeout value for
            the socket connect and the socket read, or an instance of
            :class:`urllib3.util.Timeout`, which gives you more fine-grained
            control over your timeouts.
        """
        self.num_requests += 1
    
        timeout_obj = self._get_timeout(timeout)
        timeout_obj.start_connect()
        conn.timeout = timeout_obj.connect_timeout
    
        # Trigger any extra validation we need to do.
        try:
>           self._validate_conn(conn)

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py:382: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754a587880>
conn = <urllib3.connection.HTTPSConnection object at 0x7f754a6e75e0>

    def _validate_conn(self, conn):
        """
        Called right before a request is made, after the socket is created.
        """
        super(HTTPSConnectionPool, self)._validate_conn(conn)
    
        # Force connect early to allow us to validate the connection.
        if not getattr(conn, "sock", None):  # AppEngine might not have  `.sock`
>           conn.connect()

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py:1010: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connection.HTTPSConnection object at 0x7f754a6e75e0>

    def connect(self):
        # Add certificate verification
>       conn = self._new_conn()

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connection.py:353: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connection.HTTPSConnection object at 0x7f754a6e75e0>

    def _new_conn(self):
        """Establish a socket connection and set nodelay settings on it.
    
        :return: New socket connection.
        """
        extra_kw = {}
        if self.source_address:
            extra_kw["source_address"] = self.source_address
    
        if self.socket_options:
            extra_kw["socket_options"] = self.socket_options
    
        try:
            conn = connection.create_connection(
                (self._dns_host, self.port), self.timeout, **extra_kw
            )
    
        except SocketTimeout:
            raise ConnectTimeoutError(
                self,
                "Connection to %s timed out. (connect timeout=%s)"
                % (self.host, self.timeout),
            )
    
        except SocketError as e:
>           raise NewConnectionError(
                self, "Failed to establish a new connection: %s" % e
            )
E           urllib3.exceptions.NewConnectionError: <urllib3.connection.HTTPSConnection object at 0x7f754a6e75e0>: Failed to establish a new connection: [Errno 110] Connection timed out

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connection.py:181: NewConnectionError

During handling of the above exception, another exception occurred:

self = <requests.adapters.HTTPAdapter object at 0x7f754a587bb0>
request = <PreparedRequest [POST]>, stream = False
timeout = Timeout(connect=None, read=None, total=None), verify = True
cert = None, proxies = OrderedDict()

    def send(self, request, stream=False, timeout=None, verify=True, cert=None, proxies=None):
        """Sends PreparedRequest object. Returns Response object.
    
        :param request: The :class:`PreparedRequest <PreparedRequest>` being sent.
        :param stream: (optional) Whether to stream the request content.
        :param timeout: (optional) How long to wait for the server to send
            data before giving up, as a float, or a :ref:`(connect timeout,
            read timeout) <timeouts>` tuple.
        :type timeout: float or tuple or urllib3 Timeout object
        :param verify: (optional) Either a boolean, in which case it controls whether
            we verify the server's TLS certificate, or a string, in which case it
            must be a path to a CA bundle to use
        :param cert: (optional) Any user-provided SSL certificate to be trusted.
        :param proxies: (optional) The proxies dictionary to apply to the request.
        :rtype: requests.Response
        """
    
        try:
            conn = self.get_connection(request.url, proxies)
        except LocationValueError as e:
            raise InvalidURL(e, request=request)
    
        self.cert_verify(conn, request.url, verify, cert)
        url = self.request_url(request, proxies)
        self.add_headers(request, stream=stream, timeout=timeout, verify=verify, cert=cert, proxies=proxies)
    
        chunked = not (request.body is None or 'Content-Length' in request.headers)
    
        if isinstance(timeout, tuple):
            try:
                connect, read = timeout
                timeout = TimeoutSauce(connect=connect, read=read)
            except ValueError as e:
                # this may raise a string formatting error.
                err = ("Invalid timeout {}. Pass a (connect, read) "
                       "timeout tuple, or a single float to set "
                       "both timeouts to the same value".format(timeout))
                raise ValueError(err)
        elif isinstance(timeout, TimeoutSauce):
            pass
        else:
            timeout = TimeoutSauce(connect=timeout, read=timeout)
    
        try:
            if not chunked:
>               resp = conn.urlopen(
                    method=request.method,
                    url=url,
                    body=request.body,
                    headers=request.headers,
                    redirect=False,
                    assert_same_host=False,
                    preload_content=False,
                    decode_content=False,
                    retries=self.max_retries,
                    timeout=timeout
                )

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/adapters.py:439: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754a587880>
method = 'POST'
url = '/api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf'
body = b'{"size": 999, "query": {"terms": {"pennsieve.identifier": ["55", "68"]}}}'
headers = {'User-Agent': 'python-requests/2.25.1', 'Accept-Encoding': 'gzip, deflate', 'Accept': '*/*', 'Connection': 'keep-alive', 'Content-Length': '73', 'Content-Type': 'application/json'}
retries = Retry(total=0, connect=None, read=False, redirect=None, status=None)
redirect = False, assert_same_host = False
timeout = Timeout(connect=None, read=None, total=None), pool_timeout = None
release_conn = False, chunked = False, body_pos = None
response_kw = {'decode_content': False, 'preload_content': False}
parsed_url = Url(scheme=None, auth=None, host=None, port=None, path='/api/1/elastic/SPARC_PortalDatasets_dev/_search', query='api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf', fragment=None)
destination_scheme = None, conn = None, release_this_conn = True
http_tunnel_required = False, err = None, clean_exit = False

    def urlopen(
        self,
        method,
        url,
        body=None,
        headers=None,
        retries=None,
        redirect=True,
        assert_same_host=True,
        timeout=_Default,
        pool_timeout=None,
        release_conn=None,
        chunked=False,
        body_pos=None,
        **response_kw
    ):
        """
        Get a connection from the pool and perform an HTTP request. This is the
        lowest level call for making a request, so you'll need to specify all
        the raw details.
    
        .. note::
    
           More commonly, it's appropriate to use a convenience method provided
           by :class:`.RequestMethods`, such as :meth:`request`.
    
        .. note::
    
           `release_conn` will only behave as expected if
           `preload_content=False` because we want to make
           `preload_content=False` the default behaviour someday soon without
           breaking backwards compatibility.
    
        :param method:
            HTTP request method (such as GET, POST, PUT, etc.)
    
        :param url:
            The URL to perform the request on.
    
        :param body:
            Data to send in the request body, either :class:`str`, :class:`bytes`,
            an iterable of :class:`str`/:class:`bytes`, or a file-like object.
    
        :param headers:
            Dictionary of custom headers to send, such as User-Agent,
            If-None-Match, etc. If None, pool headers are used. If provided,
            these headers completely replace any pool-specific headers.
    
        :param retries:
            Configure the number of retries to allow before raising a
            :class:`~urllib3.exceptions.MaxRetryError` exception.
    
            Pass ``None`` to retry until you receive a response. Pass a
            :class:`~urllib3.util.retry.Retry` object for fine-grained control
            over different types of retries.
            Pass an integer number to retry connection errors that many times,
            but no other types of errors. Pass zero to never retry.
    
            If ``False``, then retries are disabled and any exception is raised
            immediately. Also, instead of raising a MaxRetryError on redirects,
            the redirect response will be returned.
    
        :type retries: :class:`~urllib3.util.retry.Retry`, False, or an int.
    
        :param redirect:
            If True, automatically handle redirects (status codes 301, 302,
            303, 307, 308). Each redirect counts as a retry. Disabling retries
            will disable redirect, too.
    
        :param assert_same_host:
            If ``True``, will make sure that the host of the pool requests is
            consistent else will raise HostChangedError. When ``False``, you can
            use the pool on an HTTP proxy and request foreign hosts.
    
        :param timeout:
            If specified, overrides the default timeout for this one
            request. It may be a float (in seconds) or an instance of
            :class:`urllib3.util.Timeout`.
    
        :param pool_timeout:
            If set and the pool is set to block=True, then this method will
            block for ``pool_timeout`` seconds and raise EmptyPoolError if no
            connection is available within the time period.
    
        :param release_conn:
            If False, then the urlopen call will not release the connection
            back into the pool once a response is received (but will release if
            you read the entire contents of the response such as when
            `preload_content=True`). This is useful if you're not preloading
            the response's content immediately. You will need to call
            ``r.release_conn()`` on the response ``r`` to return the connection
            back into the pool. If None, it takes the value of
            ``response_kw.get('preload_content', True)``.
    
        :param chunked:
            If True, urllib3 will send the body using chunked transfer
            encoding. Otherwise, urllib3 will send the body using the standard
            content-length form. Defaults to False.
    
        :param int body_pos:
            Position to seek to in file-like body in the event of a retry or
            redirect. Typically this won't need to be set because urllib3 will
            auto-populate the value when needed.
    
        :param \\**response_kw:
            Additional parameters are passed to
            :meth:`urllib3.response.HTTPResponse.from_httplib`
        """
    
        parsed_url = parse_url(url)
        destination_scheme = parsed_url.scheme
    
        if headers is None:
            headers = self.headers
    
        if not isinstance(retries, Retry):
            retries = Retry.from_int(retries, redirect=redirect, default=self.retries)
    
        if release_conn is None:
            release_conn = response_kw.get("preload_content", True)
    
        # Check host
        if assert_same_host and not self.is_same_host(url):
            raise HostChangedError(self, url, retries)
    
        # Ensure that the URL we're connecting to is properly encoded
        if url.startswith("/"):
            url = six.ensure_str(_encode_target(url))
        else:
            url = six.ensure_str(parsed_url.url)
    
        conn = None
    
        # Track whether `conn` needs to be released before
        # returning/raising/recursing. Update this variable if necessary, and
        # leave `release_conn` constant throughout the function. That way, if
        # the function recurses, the original value of `release_conn` will be
        # passed down into the recursive call, and its value will be respected.
        #
        # See issue #651 [1] for details.
        #
        # [1] <https://github.com/urllib3/urllib3/issues/651>
        release_this_conn = release_conn
    
        http_tunnel_required = connection_requires_http_tunnel(
            self.proxy, self.proxy_config, destination_scheme
        )
    
        # Merge the proxy headers. Only done when not using HTTP CONNECT. We
        # have to copy the headers dict so we can safely change it without those
        # changes being reflected in anyone else's copy.
        if not http_tunnel_required:
            headers = headers.copy()
            headers.update(self.proxy_headers)
    
        # Must keep the exception bound to a separate variable or else Python 3
        # complains about UnboundLocalError.
        err = None
    
        # Keep track of whether we cleanly exited the except block. This
        # ensures we do proper cleanup in finally.
        clean_exit = False
    
        # Rewind body position, if needed. Record current position
        # for future rewinds in the event of a redirect/retry.
        body_pos = set_file_position(body, body_pos)
    
        try:
            # Request a connection from the queue.
            timeout_obj = self._get_timeout(timeout)
            conn = self._get_conn(timeout=pool_timeout)
    
            conn.timeout = timeout_obj.connect_timeout
    
            is_new_proxy_conn = self.proxy is not None and not getattr(
                conn, "sock", None
            )
            if is_new_proxy_conn and http_tunnel_required:
                self._prepare_proxy(conn)
    
            # Make the request on the httplib connection object.
            httplib_response = self._make_request(
                conn,
                method,
                url,
                timeout=timeout_obj,
                body=body,
                headers=headers,
                chunked=chunked,
            )
    
            # If we're going to release the connection in ``finally:``, then
            # the response doesn't need to know about the connection. Otherwise
            # it will also try to release it and we'll have a double-release
            # mess.
            response_conn = conn if not release_conn else None
    
            # Pass method to Response for length checking
            response_kw["request_method"] = method
    
            # Import httplib's response into our own wrapper object
            response = self.ResponseCls.from_httplib(
                httplib_response,
                pool=self,
                connection=response_conn,
                retries=retries,
                **response_kw
            )
    
            # Everything went great!
            clean_exit = True
    
        except EmptyPoolError:
            # Didn't get a connection from the pool, no need to clean up
            clean_exit = True
            release_this_conn = False
            raise
    
        except (
            TimeoutError,
            HTTPException,
            SocketError,
            ProtocolError,
            BaseSSLError,
            SSLError,
            CertificateError,
        ) as e:
            # Discard the connection for these exceptions. It will be
            # replaced during the next _get_conn() call.
            clean_exit = False
            if isinstance(e, (BaseSSLError, CertificateError)):
                e = SSLError(e)
            elif isinstance(e, (SocketError, NewConnectionError)) and self.proxy:
                e = ProxyError("Cannot connect to proxy.", e)
            elif isinstance(e, (SocketError, HTTPException)):
                e = ProtocolError("Connection aborted.", e)
    
>           retries = retries.increment(
                method, url, error=e, _pool=self, _stacktrace=sys.exc_info()[2]
            )

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py:755: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = Retry(total=0, connect=None, read=False, redirect=None, status=None)
method = 'POST'
url = '/api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf'
response = None
error = NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7f754a6e75e0>: Failed to establish a new connection: [Errno 110] Connection timed out')
_pool = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754a587880>
_stacktrace = <traceback object at 0x7f754a638580>

    def increment(
        self,
        method=None,
        url=None,
        response=None,
        error=None,
        _pool=None,
        _stacktrace=None,
    ):
        """Return a new Retry object with incremented retry counters.
    
        :param response: A response object, or None, if the server did not
            return a response.
        :type response: :class:`~urllib3.response.HTTPResponse`
        :param Exception error: An error encountered during the request, or
            None if the response was received successfully.
    
        :return: A new ``Retry`` object.
        """
        if self.total is False and error:
            # Disabled, indicate to re-raise the error.
            raise six.reraise(type(error), error, _stacktrace)
    
        total = self.total
        if total is not None:
            total -= 1
    
        connect = self.connect
        read = self.read
        redirect = self.redirect
        status_count = self.status
        other = self.other
        cause = "unknown"
        status = None
        redirect_location = None
    
        if error and self._is_connection_error(error):
            # Connect retry?
            if connect is False:
                raise six.reraise(type(error), error, _stacktrace)
            elif connect is not None:
                connect -= 1
    
        elif error and self._is_read_error(error):
            # Read retry?
            if read is False or not self._is_method_retryable(method):
                raise six.reraise(type(error), error, _stacktrace)
            elif read is not None:
                read -= 1
    
        elif error:
            # Other retry?
            if other is not None:
                other -= 1
    
        elif response and response.get_redirect_location():
            # Redirect retry?
            if redirect is not None:
                redirect -= 1
            cause = "too many redirects"
            redirect_location = response.get_redirect_location()
            status = response.status
    
        else:
            # Incrementing because of a server error like a 500 in
            # status_forcelist and the given method is in the allowed_methods
            cause = ResponseError.GENERIC_ERROR
            if response and response.status:
                if status_count is not None:
                    status_count -= 1
                cause = ResponseError.SPECIFIC_ERROR.format(status_code=response.status)
                status = response.status
    
        history = self.history + (
            RequestHistory(method, url, error, status, redirect_location),
        )
    
        new_retry = self.new(
            total=total,
            connect=connect,
            read=read,
            redirect=redirect,
            status=status_count,
            other=other,
            history=history,
        )
    
        if new_retry.is_exhausted():
>           raise MaxRetryError(_pool, url, error or ResponseError(cause))
E           urllib3.exceptions.MaxRetryError: HTTPSConnectionPool(host='scicrunch.org', port=443): Max retries exceeded with url: /api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7f754a6e75e0>: Failed to establish a new connection: [Errno 110] Connection timed out'))

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/util/retry.py:574: MaxRetryError

During handling of the above exception, another exception occurred:

client = <FlaskClient <Flask 'app.main'>>

    def test_scicrunch_multiple_dataset_ids(client):
        # Testing with dataset 55 and 68
>       r = client.get('/dataset_info/using_multiple_discoverIds/?discoverIds=55&discoverIds=68')

tests/test_scicrunch.py:102: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/werkzeug/test.py:1029: in get
    return self.open(*args, **kw)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/testing.py:222: in open
    return Client.open(
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/werkzeug/test.py:993: in open
    response = self.run_wsgi_app(environ.copy(), buffered=buffered)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/werkzeug/test.py:884: in run_wsgi_app
    rv = run_wsgi_app(self.application, environ, buffered=buffered)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/werkzeug/test.py:1119: in run_wsgi_app
    app_rv = app(environ, start_response)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:2463: in __call__
    return self.wsgi_app(environ, start_response)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:2449: in wsgi_app
    response = self.handle_exception(e)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask_cors/extension.py:161: in wrapped_function
    return cors_after_request(app.make_response(f(*args, **kwargs)))
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1866: in handle_exception
    reraise(exc_type, exc_value, tb)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/_compat.py:39: in reraise
    raise value
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:2446: in wsgi_app
    response = self.full_dispatch_request()
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1951: in full_dispatch_request
    rv = self.handle_user_exception(e)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask_cors/extension.py:161: in wrapped_function
    return cors_after_request(app.make_response(f(*args, **kwargs)))
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1820: in handle_user_exception
    reraise(exc_type, exc_value, tb)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/_compat.py:39: in reraise
    raise value
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1949: in full_dispatch_request
    rv = self.dispatch_request()
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1935: in dispatch_request
    return self.view_functions[rule.endpoint](**req.view_args)
app/main.py:567: in get_dataset_info_discoverIds
    return process_results(dataset_search(query))
app/main.py:663: in dataset_search
    response = requests.post(f'{Config.SCI_CRUNCH_HOST}/_search',
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/api.py:119: in post
    return request('post', url, data=data, json=json, **kwargs)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/api.py:61: in request
    return session.request(method=method, url=url, **kwargs)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/sessions.py:542: in request
    resp = self.send(prep, **send_kwargs)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/sessions.py:655: in send
    r = adapter.send(request, **kwargs)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <requests.adapters.HTTPAdapter object at 0x7f754a587bb0>
request = <PreparedRequest [POST]>, stream = False
timeout = Timeout(connect=None, read=None, total=None), verify = True
cert = None, proxies = OrderedDict()

    def send(self, request, stream=False, timeout=None, verify=True, cert=None, proxies=None):
        """Sends PreparedRequest object. Returns Response object.
    
        :param request: The :class:`PreparedRequest <PreparedRequest>` being sent.
        :param stream: (optional) Whether to stream the request content.
        :param timeout: (optional) How long to wait for the server to send
            data before giving up, as a float, or a :ref:`(connect timeout,
            read timeout) <timeouts>` tuple.
        :type timeout: float or tuple or urllib3 Timeout object
        :param verify: (optional) Either a boolean, in which case it controls whether
            we verify the server's TLS certificate, or a string, in which case it
            must be a path to a CA bundle to use
        :param cert: (optional) Any user-provided SSL certificate to be trusted.
        :param proxies: (optional) The proxies dictionary to apply to the request.
        :rtype: requests.Response
        """
    
        try:
            conn = self.get_connection(request.url, proxies)
        except LocationValueError as e:
            raise InvalidURL(e, request=request)
    
        self.cert_verify(conn, request.url, verify, cert)
        url = self.request_url(request, proxies)
        self.add_headers(request, stream=stream, timeout=timeout, verify=verify, cert=cert, proxies=proxies)
    
        chunked = not (request.body is None or 'Content-Length' in request.headers)
    
        if isinstance(timeout, tuple):
            try:
                connect, read = timeout
                timeout = TimeoutSauce(connect=connect, read=read)
            except ValueError as e:
                # this may raise a string formatting error.
                err = ("Invalid timeout {}. Pass a (connect, read) "
                       "timeout tuple, or a single float to set "
                       "both timeouts to the same value".format(timeout))
                raise ValueError(err)
        elif isinstance(timeout, TimeoutSauce):
            pass
        else:
            timeout = TimeoutSauce(connect=timeout, read=timeout)
    
        try:
            if not chunked:
                resp = conn.urlopen(
                    method=request.method,
                    url=url,
                    body=request.body,
                    headers=request.headers,
                    redirect=False,
                    assert_same_host=False,
                    preload_content=False,
                    decode_content=False,
                    retries=self.max_retries,
                    timeout=timeout
                )
    
            # Send the request.
            else:
                if hasattr(conn, 'proxy_pool'):
                    conn = conn.proxy_pool
    
                low_conn = conn._get_conn(timeout=DEFAULT_POOL_TIMEOUT)
    
                try:
                    low_conn.putrequest(request.method,
                                        url,
                                        skip_accept_encoding=True)
    
                    for header, value in request.headers.items():
                        low_conn.putheader(header, value)
    
                    low_conn.endheaders()
    
                    for i in request.body:
                        low_conn.send(hex(len(i))[2:].encode('utf-8'))
                        low_conn.send(b'\r\n')
                        low_conn.send(i)
                        low_conn.send(b'\r\n')
                    low_conn.send(b'0\r\n\r\n')
    
                    # Receive the response from the server
                    try:
                        # For Python 2.7, use buffering of HTTP responses
                        r = low_conn.getresponse(buffering=True)
                    except TypeError:
                        # For compatibility with Python 3.3+
                        r = low_conn.getresponse()
    
                    resp = HTTPResponse.from_httplib(
                        r,
                        pool=conn,
                        connection=low_conn,
                        preload_content=False,
                        decode_content=False
                    )
                except:
                    # If we hit any problems here, clean up the connection.
                    # Then, reraise so that we can handle the actual exception.
                    low_conn.close()
                    raise
    
        except (ProtocolError, socket.error) as err:
            raise ConnectionError(err, request=request)
    
        except MaxRetryError as e:
            if isinstance(e.reason, ConnectTimeoutError):
                # TODO: Remove this in 3.0.0: see #2811
                if not isinstance(e.reason, NewConnectionError):
                    raise ConnectTimeout(e, request=request)
    
            if isinstance(e.reason, ResponseError):
                raise RetryError(e, request=request)
    
            if isinstance(e.reason, _ProxyError):
                raise ProxyError(e, request=request)
    
            if isinstance(e.reason, _SSLError):
                # This branch is for urllib3 v1.22 and later.
                raise SSLError(e, request=request)
    
>           raise ConnectionError(e, request=request)
E           requests.exceptions.ConnectionError: HTTPSConnectionPool(host='scicrunch.org', port=443): Max retries exceeded with url: /api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7f754a6e75e0>: Failed to establish a new connection: [Errno 110] Connection timed out'))

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/adapters.py:516: ConnectionError
____________________________ test_scicrunch_search _____________________________

self = <urllib3.connection.HTTPSConnection object at 0x7f754a57fbb0>

    def _new_conn(self):
        """Establish a socket connection and set nodelay settings on it.
    
        :return: New socket connection.
        """
        extra_kw = {}
        if self.source_address:
            extra_kw["source_address"] = self.source_address
    
        if self.socket_options:
            extra_kw["socket_options"] = self.socket_options
    
        try:
>           conn = connection.create_connection(
                (self._dns_host, self.port), self.timeout, **extra_kw
            )

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connection.py:169: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

address = ('scicrunch.org', 443), timeout = None, source_address = None
socket_options = [(6, 1, 1)]

    def create_connection(
        address,
        timeout=socket._GLOBAL_DEFAULT_TIMEOUT,
        source_address=None,
        socket_options=None,
    ):
        """Connect to *address* and return the socket object.
    
        Convenience function.  Connect to *address* (a 2-tuple ``(host,
        port)``) and return the socket object.  Passing the optional
        *timeout* parameter will set the timeout on the socket instance
        before attempting to connect.  If no *timeout* is supplied, the
        global default timeout setting returned by :func:`socket.getdefaulttimeout`
        is used.  If *source_address* is set it must be a tuple of (host, port)
        for the socket to bind as a source address before making the connection.
        An host of '' or port 0 tells the OS to use the default.
        """
    
        host, port = address
        if host.startswith("["):
            host = host.strip("[]")
        err = None
    
        # Using the value from allowed_gai_family() in the context of getaddrinfo lets
        # us select whether to work with IPv4 DNS records, IPv6 records, or both.
        # The original create_connection function always returns all records.
        family = allowed_gai_family()
    
        try:
            host.encode("idna")
        except UnicodeError:
            return six.raise_from(
                LocationParseError(u"'%s', label empty or too long" % host), None
            )
    
        for res in socket.getaddrinfo(host, port, family, socket.SOCK_STREAM):
            af, socktype, proto, canonname, sa = res
            sock = None
            try:
                sock = socket.socket(af, socktype, proto)
    
                # If provided, set socket level options before connecting.
                _set_socket_options(sock, socket_options)
    
                if timeout is not socket._GLOBAL_DEFAULT_TIMEOUT:
                    sock.settimeout(timeout)
                if source_address:
                    sock.bind(source_address)
                sock.connect(sa)
                return sock
    
            except socket.error as e:
                err = e
                if sock is not None:
                    sock.close()
                    sock = None
    
        if err is not None:
>           raise err

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/util/connection.py:96: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

address = ('scicrunch.org', 443), timeout = None, source_address = None
socket_options = [(6, 1, 1)]

    def create_connection(
        address,
        timeout=socket._GLOBAL_DEFAULT_TIMEOUT,
        source_address=None,
        socket_options=None,
    ):
        """Connect to *address* and return the socket object.
    
        Convenience function.  Connect to *address* (a 2-tuple ``(host,
        port)``) and return the socket object.  Passing the optional
        *timeout* parameter will set the timeout on the socket instance
        before attempting to connect.  If no *timeout* is supplied, the
        global default timeout setting returned by :func:`socket.getdefaulttimeout`
        is used.  If *source_address* is set it must be a tuple of (host, port)
        for the socket to bind as a source address before making the connection.
        An host of '' or port 0 tells the OS to use the default.
        """
    
        host, port = address
        if host.startswith("["):
            host = host.strip("[]")
        err = None
    
        # Using the value from allowed_gai_family() in the context of getaddrinfo lets
        # us select whether to work with IPv4 DNS records, IPv6 records, or both.
        # The original create_connection function always returns all records.
        family = allowed_gai_family()
    
        try:
            host.encode("idna")
        except UnicodeError:
            return six.raise_from(
                LocationParseError(u"'%s', label empty or too long" % host), None
            )
    
        for res in socket.getaddrinfo(host, port, family, socket.SOCK_STREAM):
            af, socktype, proto, canonname, sa = res
            sock = None
            try:
                sock = socket.socket(af, socktype, proto)
    
                # If provided, set socket level options before connecting.
                _set_socket_options(sock, socket_options)
    
                if timeout is not socket._GLOBAL_DEFAULT_TIMEOUT:
                    sock.settimeout(timeout)
                if source_address:
                    sock.bind(source_address)
>               sock.connect(sa)
E               TimeoutError: [Errno 110] Connection timed out

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/util/connection.py:86: TimeoutError

During handling of the above exception, another exception occurred:

self = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754a588f10>
method = 'GET'
url = '/api/1/elastic/SPARC_PortalDatasets_dev/_search?q=heart&size=10&from=0&api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf'
body = None
headers = {'User-Agent': 'python-requests/2.25.1', 'Accept-Encoding': 'gzip, deflate', 'Accept': '*/*', 'Connection': 'keep-alive'}
retries = Retry(total=0, connect=None, read=False, redirect=None, status=None)
redirect = False, assert_same_host = False
timeout = Timeout(connect=None, read=None, total=None), pool_timeout = None
release_conn = False, chunked = False, body_pos = None
response_kw = {'decode_content': False, 'preload_content': False}
parsed_url = Url(scheme=None, auth=None, host=None, port=None, path='/api/1/elastic/SPARC_PortalDatasets_dev/_search', query='q=heart&size=10&from=0&api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf', fragment=None)
destination_scheme = None, conn = None, release_this_conn = True
http_tunnel_required = False, err = None, clean_exit = False

    def urlopen(
        self,
        method,
        url,
        body=None,
        headers=None,
        retries=None,
        redirect=True,
        assert_same_host=True,
        timeout=_Default,
        pool_timeout=None,
        release_conn=None,
        chunked=False,
        body_pos=None,
        **response_kw
    ):
        """
        Get a connection from the pool and perform an HTTP request. This is the
        lowest level call for making a request, so you'll need to specify all
        the raw details.
    
        .. note::
    
           More commonly, it's appropriate to use a convenience method provided
           by :class:`.RequestMethods`, such as :meth:`request`.
    
        .. note::
    
           `release_conn` will only behave as expected if
           `preload_content=False` because we want to make
           `preload_content=False` the default behaviour someday soon without
           breaking backwards compatibility.
    
        :param method:
            HTTP request method (such as GET, POST, PUT, etc.)
    
        :param url:
            The URL to perform the request on.
    
        :param body:
            Data to send in the request body, either :class:`str`, :class:`bytes`,
            an iterable of :class:`str`/:class:`bytes`, or a file-like object.
    
        :param headers:
            Dictionary of custom headers to send, such as User-Agent,
            If-None-Match, etc. If None, pool headers are used. If provided,
            these headers completely replace any pool-specific headers.
    
        :param retries:
            Configure the number of retries to allow before raising a
            :class:`~urllib3.exceptions.MaxRetryError` exception.
    
            Pass ``None`` to retry until you receive a response. Pass a
            :class:`~urllib3.util.retry.Retry` object for fine-grained control
            over different types of retries.
            Pass an integer number to retry connection errors that many times,
            but no other types of errors. Pass zero to never retry.
    
            If ``False``, then retries are disabled and any exception is raised
            immediately. Also, instead of raising a MaxRetryError on redirects,
            the redirect response will be returned.
    
        :type retries: :class:`~urllib3.util.retry.Retry`, False, or an int.
    
        :param redirect:
            If True, automatically handle redirects (status codes 301, 302,
            303, 307, 308). Each redirect counts as a retry. Disabling retries
            will disable redirect, too.
    
        :param assert_same_host:
            If ``True``, will make sure that the host of the pool requests is
            consistent else will raise HostChangedError. When ``False``, you can
            use the pool on an HTTP proxy and request foreign hosts.
    
        :param timeout:
            If specified, overrides the default timeout for this one
            request. It may be a float (in seconds) or an instance of
            :class:`urllib3.util.Timeout`.
    
        :param pool_timeout:
            If set and the pool is set to block=True, then this method will
            block for ``pool_timeout`` seconds and raise EmptyPoolError if no
            connection is available within the time period.
    
        :param release_conn:
            If False, then the urlopen call will not release the connection
            back into the pool once a response is received (but will release if
            you read the entire contents of the response such as when
            `preload_content=True`). This is useful if you're not preloading
            the response's content immediately. You will need to call
            ``r.release_conn()`` on the response ``r`` to return the connection
            back into the pool. If None, it takes the value of
            ``response_kw.get('preload_content', True)``.
    
        :param chunked:
            If True, urllib3 will send the body using chunked transfer
            encoding. Otherwise, urllib3 will send the body using the standard
            content-length form. Defaults to False.
    
        :param int body_pos:
            Position to seek to in file-like body in the event of a retry or
            redirect. Typically this won't need to be set because urllib3 will
            auto-populate the value when needed.
    
        :param \\**response_kw:
            Additional parameters are passed to
            :meth:`urllib3.response.HTTPResponse.from_httplib`
        """
    
        parsed_url = parse_url(url)
        destination_scheme = parsed_url.scheme
    
        if headers is None:
            headers = self.headers
    
        if not isinstance(retries, Retry):
            retries = Retry.from_int(retries, redirect=redirect, default=self.retries)
    
        if release_conn is None:
            release_conn = response_kw.get("preload_content", True)
    
        # Check host
        if assert_same_host and not self.is_same_host(url):
            raise HostChangedError(self, url, retries)
    
        # Ensure that the URL we're connecting to is properly encoded
        if url.startswith("/"):
            url = six.ensure_str(_encode_target(url))
        else:
            url = six.ensure_str(parsed_url.url)
    
        conn = None
    
        # Track whether `conn` needs to be released before
        # returning/raising/recursing. Update this variable if necessary, and
        # leave `release_conn` constant throughout the function. That way, if
        # the function recurses, the original value of `release_conn` will be
        # passed down into the recursive call, and its value will be respected.
        #
        # See issue #651 [1] for details.
        #
        # [1] <https://github.com/urllib3/urllib3/issues/651>
        release_this_conn = release_conn
    
        http_tunnel_required = connection_requires_http_tunnel(
            self.proxy, self.proxy_config, destination_scheme
        )
    
        # Merge the proxy headers. Only done when not using HTTP CONNECT. We
        # have to copy the headers dict so we can safely change it without those
        # changes being reflected in anyone else's copy.
        if not http_tunnel_required:
            headers = headers.copy()
            headers.update(self.proxy_headers)
    
        # Must keep the exception bound to a separate variable or else Python 3
        # complains about UnboundLocalError.
        err = None
    
        # Keep track of whether we cleanly exited the except block. This
        # ensures we do proper cleanup in finally.
        clean_exit = False
    
        # Rewind body position, if needed. Record current position
        # for future rewinds in the event of a redirect/retry.
        body_pos = set_file_position(body, body_pos)
    
        try:
            # Request a connection from the queue.
            timeout_obj = self._get_timeout(timeout)
            conn = self._get_conn(timeout=pool_timeout)
    
            conn.timeout = timeout_obj.connect_timeout
    
            is_new_proxy_conn = self.proxy is not None and not getattr(
                conn, "sock", None
            )
            if is_new_proxy_conn and http_tunnel_required:
                self._prepare_proxy(conn)
    
            # Make the request on the httplib connection object.
>           httplib_response = self._make_request(
                conn,
                method,
                url,
                timeout=timeout_obj,
                body=body,
                headers=headers,
                chunked=chunked,
            )

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py:699: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754a588f10>
conn = <urllib3.connection.HTTPSConnection object at 0x7f754a57fbb0>
method = 'GET'
url = '/api/1/elastic/SPARC_PortalDatasets_dev/_search?q=heart&size=10&from=0&api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf'
timeout = Timeout(connect=None, read=None, total=None), chunked = False
httplib_request_kw = {'body': None, 'headers': {'User-Agent': 'python-requests/2.25.1', 'Accept-Encoding': 'gzip, deflate', 'Accept': '*/*', 'Connection': 'keep-alive'}}
timeout_obj = Timeout(connect=None, read=None, total=None)

    def _make_request(
        self, conn, method, url, timeout=_Default, chunked=False, **httplib_request_kw
    ):
        """
        Perform a request on a given urllib connection object taken from our
        pool.
    
        :param conn:
            a connection from one of our connection pools
    
        :param timeout:
            Socket timeout in seconds for the request. This can be a
            float or integer, which will set the same timeout value for
            the socket connect and the socket read, or an instance of
            :class:`urllib3.util.Timeout`, which gives you more fine-grained
            control over your timeouts.
        """
        self.num_requests += 1
    
        timeout_obj = self._get_timeout(timeout)
        timeout_obj.start_connect()
        conn.timeout = timeout_obj.connect_timeout
    
        # Trigger any extra validation we need to do.
        try:
>           self._validate_conn(conn)

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py:382: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754a588f10>
conn = <urllib3.connection.HTTPSConnection object at 0x7f754a57fbb0>

    def _validate_conn(self, conn):
        """
        Called right before a request is made, after the socket is created.
        """
        super(HTTPSConnectionPool, self)._validate_conn(conn)
    
        # Force connect early to allow us to validate the connection.
        if not getattr(conn, "sock", None):  # AppEngine might not have  `.sock`
>           conn.connect()

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py:1010: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connection.HTTPSConnection object at 0x7f754a57fbb0>

    def connect(self):
        # Add certificate verification
>       conn = self._new_conn()

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connection.py:353: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connection.HTTPSConnection object at 0x7f754a57fbb0>

    def _new_conn(self):
        """Establish a socket connection and set nodelay settings on it.
    
        :return: New socket connection.
        """
        extra_kw = {}
        if self.source_address:
            extra_kw["source_address"] = self.source_address
    
        if self.socket_options:
            extra_kw["socket_options"] = self.socket_options
    
        try:
            conn = connection.create_connection(
                (self._dns_host, self.port), self.timeout, **extra_kw
            )
    
        except SocketTimeout:
            raise ConnectTimeoutError(
                self,
                "Connection to %s timed out. (connect timeout=%s)"
                % (self.host, self.timeout),
            )
    
        except SocketError as e:
>           raise NewConnectionError(
                self, "Failed to establish a new connection: %s" % e
            )
E           urllib3.exceptions.NewConnectionError: <urllib3.connection.HTTPSConnection object at 0x7f754a57fbb0>: Failed to establish a new connection: [Errno 110] Connection timed out

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connection.py:181: NewConnectionError

During handling of the above exception, another exception occurred:

self = <requests.adapters.HTTPAdapter object at 0x7f754a588160>
request = <PreparedRequest [GET]>, stream = False
timeout = Timeout(connect=None, read=None, total=None), verify = True
cert = None, proxies = OrderedDict()

    def send(self, request, stream=False, timeout=None, verify=True, cert=None, proxies=None):
        """Sends PreparedRequest object. Returns Response object.
    
        :param request: The :class:`PreparedRequest <PreparedRequest>` being sent.
        :param stream: (optional) Whether to stream the request content.
        :param timeout: (optional) How long to wait for the server to send
            data before giving up, as a float, or a :ref:`(connect timeout,
            read timeout) <timeouts>` tuple.
        :type timeout: float or tuple or urllib3 Timeout object
        :param verify: (optional) Either a boolean, in which case it controls whether
            we verify the server's TLS certificate, or a string, in which case it
            must be a path to a CA bundle to use
        :param cert: (optional) Any user-provided SSL certificate to be trusted.
        :param proxies: (optional) The proxies dictionary to apply to the request.
        :rtype: requests.Response
        """
    
        try:
            conn = self.get_connection(request.url, proxies)
        except LocationValueError as e:
            raise InvalidURL(e, request=request)
    
        self.cert_verify(conn, request.url, verify, cert)
        url = self.request_url(request, proxies)
        self.add_headers(request, stream=stream, timeout=timeout, verify=verify, cert=cert, proxies=proxies)
    
        chunked = not (request.body is None or 'Content-Length' in request.headers)
    
        if isinstance(timeout, tuple):
            try:
                connect, read = timeout
                timeout = TimeoutSauce(connect=connect, read=read)
            except ValueError as e:
                # this may raise a string formatting error.
                err = ("Invalid timeout {}. Pass a (connect, read) "
                       "timeout tuple, or a single float to set "
                       "both timeouts to the same value".format(timeout))
                raise ValueError(err)
        elif isinstance(timeout, TimeoutSauce):
            pass
        else:
            timeout = TimeoutSauce(connect=timeout, read=timeout)
    
        try:
            if not chunked:
>               resp = conn.urlopen(
                    method=request.method,
                    url=url,
                    body=request.body,
                    headers=request.headers,
                    redirect=False,
                    assert_same_host=False,
                    preload_content=False,
                    decode_content=False,
                    retries=self.max_retries,
                    timeout=timeout
                )

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/adapters.py:439: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754a588f10>
method = 'GET'
url = '/api/1/elastic/SPARC_PortalDatasets_dev/_search?q=heart&size=10&from=0&api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf'
body = None
headers = {'User-Agent': 'python-requests/2.25.1', 'Accept-Encoding': 'gzip, deflate', 'Accept': '*/*', 'Connection': 'keep-alive'}
retries = Retry(total=0, connect=None, read=False, redirect=None, status=None)
redirect = False, assert_same_host = False
timeout = Timeout(connect=None, read=None, total=None), pool_timeout = None
release_conn = False, chunked = False, body_pos = None
response_kw = {'decode_content': False, 'preload_content': False}
parsed_url = Url(scheme=None, auth=None, host=None, port=None, path='/api/1/elastic/SPARC_PortalDatasets_dev/_search', query='q=heart&size=10&from=0&api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf', fragment=None)
destination_scheme = None, conn = None, release_this_conn = True
http_tunnel_required = False, err = None, clean_exit = False

    def urlopen(
        self,
        method,
        url,
        body=None,
        headers=None,
        retries=None,
        redirect=True,
        assert_same_host=True,
        timeout=_Default,
        pool_timeout=None,
        release_conn=None,
        chunked=False,
        body_pos=None,
        **response_kw
    ):
        """
        Get a connection from the pool and perform an HTTP request. This is the
        lowest level call for making a request, so you'll need to specify all
        the raw details.
    
        .. note::
    
           More commonly, it's appropriate to use a convenience method provided
           by :class:`.RequestMethods`, such as :meth:`request`.
    
        .. note::
    
           `release_conn` will only behave as expected if
           `preload_content=False` because we want to make
           `preload_content=False` the default behaviour someday soon without
           breaking backwards compatibility.
    
        :param method:
            HTTP request method (such as GET, POST, PUT, etc.)
    
        :param url:
            The URL to perform the request on.
    
        :param body:
            Data to send in the request body, either :class:`str`, :class:`bytes`,
            an iterable of :class:`str`/:class:`bytes`, or a file-like object.
    
        :param headers:
            Dictionary of custom headers to send, such as User-Agent,
            If-None-Match, etc. If None, pool headers are used. If provided,
            these headers completely replace any pool-specific headers.
    
        :param retries:
            Configure the number of retries to allow before raising a
            :class:`~urllib3.exceptions.MaxRetryError` exception.
    
            Pass ``None`` to retry until you receive a response. Pass a
            :class:`~urllib3.util.retry.Retry` object for fine-grained control
            over different types of retries.
            Pass an integer number to retry connection errors that many times,
            but no other types of errors. Pass zero to never retry.
    
            If ``False``, then retries are disabled and any exception is raised
            immediately. Also, instead of raising a MaxRetryError on redirects,
            the redirect response will be returned.
    
        :type retries: :class:`~urllib3.util.retry.Retry`, False, or an int.
    
        :param redirect:
            If True, automatically handle redirects (status codes 301, 302,
            303, 307, 308). Each redirect counts as a retry. Disabling retries
            will disable redirect, too.
    
        :param assert_same_host:
            If ``True``, will make sure that the host of the pool requests is
            consistent else will raise HostChangedError. When ``False``, you can
            use the pool on an HTTP proxy and request foreign hosts.
    
        :param timeout:
            If specified, overrides the default timeout for this one
            request. It may be a float (in seconds) or an instance of
            :class:`urllib3.util.Timeout`.
    
        :param pool_timeout:
            If set and the pool is set to block=True, then this method will
            block for ``pool_timeout`` seconds and raise EmptyPoolError if no
            connection is available within the time period.
    
        :param release_conn:
            If False, then the urlopen call will not release the connection
            back into the pool once a response is received (but will release if
            you read the entire contents of the response such as when
            `preload_content=True`). This is useful if you're not preloading
            the response's content immediately. You will need to call
            ``r.release_conn()`` on the response ``r`` to return the connection
            back into the pool. If None, it takes the value of
            ``response_kw.get('preload_content', True)``.
    
        :param chunked:
            If True, urllib3 will send the body using chunked transfer
            encoding. Otherwise, urllib3 will send the body using the standard
            content-length form. Defaults to False.
    
        :param int body_pos:
            Position to seek to in file-like body in the event of a retry or
            redirect. Typically this won't need to be set because urllib3 will
            auto-populate the value when needed.
    
        :param \\**response_kw:
            Additional parameters are passed to
            :meth:`urllib3.response.HTTPResponse.from_httplib`
        """
    
        parsed_url = parse_url(url)
        destination_scheme = parsed_url.scheme
    
        if headers is None:
            headers = self.headers
    
        if not isinstance(retries, Retry):
            retries = Retry.from_int(retries, redirect=redirect, default=self.retries)
    
        if release_conn is None:
            release_conn = response_kw.get("preload_content", True)
    
        # Check host
        if assert_same_host and not self.is_same_host(url):
            raise HostChangedError(self, url, retries)
    
        # Ensure that the URL we're connecting to is properly encoded
        if url.startswith("/"):
            url = six.ensure_str(_encode_target(url))
        else:
            url = six.ensure_str(parsed_url.url)
    
        conn = None
    
        # Track whether `conn` needs to be released before
        # returning/raising/recursing. Update this variable if necessary, and
        # leave `release_conn` constant throughout the function. That way, if
        # the function recurses, the original value of `release_conn` will be
        # passed down into the recursive call, and its value will be respected.
        #
        # See issue #651 [1] for details.
        #
        # [1] <https://github.com/urllib3/urllib3/issues/651>
        release_this_conn = release_conn
    
        http_tunnel_required = connection_requires_http_tunnel(
            self.proxy, self.proxy_config, destination_scheme
        )
    
        # Merge the proxy headers. Only done when not using HTTP CONNECT. We
        # have to copy the headers dict so we can safely change it without those
        # changes being reflected in anyone else's copy.
        if not http_tunnel_required:
            headers = headers.copy()
            headers.update(self.proxy_headers)
    
        # Must keep the exception bound to a separate variable or else Python 3
        # complains about UnboundLocalError.
        err = None
    
        # Keep track of whether we cleanly exited the except block. This
        # ensures we do proper cleanup in finally.
        clean_exit = False
    
        # Rewind body position, if needed. Record current position
        # for future rewinds in the event of a redirect/retry.
        body_pos = set_file_position(body, body_pos)
    
        try:
            # Request a connection from the queue.
            timeout_obj = self._get_timeout(timeout)
            conn = self._get_conn(timeout=pool_timeout)
    
            conn.timeout = timeout_obj.connect_timeout
    
            is_new_proxy_conn = self.proxy is not None and not getattr(
                conn, "sock", None
            )
            if is_new_proxy_conn and http_tunnel_required:
                self._prepare_proxy(conn)
    
            # Make the request on the httplib connection object.
            httplib_response = self._make_request(
                conn,
                method,
                url,
                timeout=timeout_obj,
                body=body,
                headers=headers,
                chunked=chunked,
            )
    
            # If we're going to release the connection in ``finally:``, then
            # the response doesn't need to know about the connection. Otherwise
            # it will also try to release it and we'll have a double-release
            # mess.
            response_conn = conn if not release_conn else None
    
            # Pass method to Response for length checking
            response_kw["request_method"] = method
    
            # Import httplib's response into our own wrapper object
            response = self.ResponseCls.from_httplib(
                httplib_response,
                pool=self,
                connection=response_conn,
                retries=retries,
                **response_kw
            )
    
            # Everything went great!
            clean_exit = True
    
        except EmptyPoolError:
            # Didn't get a connection from the pool, no need to clean up
            clean_exit = True
            release_this_conn = False
            raise
    
        except (
            TimeoutError,
            HTTPException,
            SocketError,
            ProtocolError,
            BaseSSLError,
            SSLError,
            CertificateError,
        ) as e:
            # Discard the connection for these exceptions. It will be
            # replaced during the next _get_conn() call.
            clean_exit = False
            if isinstance(e, (BaseSSLError, CertificateError)):
                e = SSLError(e)
            elif isinstance(e, (SocketError, NewConnectionError)) and self.proxy:
                e = ProxyError("Cannot connect to proxy.", e)
            elif isinstance(e, (SocketError, HTTPException)):
                e = ProtocolError("Connection aborted.", e)
    
>           retries = retries.increment(
                method, url, error=e, _pool=self, _stacktrace=sys.exc_info()[2]
            )

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py:755: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = Retry(total=0, connect=None, read=False, redirect=None, status=None)
method = 'GET'
url = '/api/1/elastic/SPARC_PortalDatasets_dev/_search?q=heart&size=10&from=0&api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf'
response = None
error = NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7f754a57fbb0>: Failed to establish a new connection: [Errno 110] Connection timed out')
_pool = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754a588f10>
_stacktrace = <traceback object at 0x7f754a598d40>

    def increment(
        self,
        method=None,
        url=None,
        response=None,
        error=None,
        _pool=None,
        _stacktrace=None,
    ):
        """Return a new Retry object with incremented retry counters.
    
        :param response: A response object, or None, if the server did not
            return a response.
        :type response: :class:`~urllib3.response.HTTPResponse`
        :param Exception error: An error encountered during the request, or
            None if the response was received successfully.
    
        :return: A new ``Retry`` object.
        """
        if self.total is False and error:
            # Disabled, indicate to re-raise the error.
            raise six.reraise(type(error), error, _stacktrace)
    
        total = self.total
        if total is not None:
            total -= 1
    
        connect = self.connect
        read = self.read
        redirect = self.redirect
        status_count = self.status
        other = self.other
        cause = "unknown"
        status = None
        redirect_location = None
    
        if error and self._is_connection_error(error):
            # Connect retry?
            if connect is False:
                raise six.reraise(type(error), error, _stacktrace)
            elif connect is not None:
                connect -= 1
    
        elif error and self._is_read_error(error):
            # Read retry?
            if read is False or not self._is_method_retryable(method):
                raise six.reraise(type(error), error, _stacktrace)
            elif read is not None:
                read -= 1
    
        elif error:
            # Other retry?
            if other is not None:
                other -= 1
    
        elif response and response.get_redirect_location():
            # Redirect retry?
            if redirect is not None:
                redirect -= 1
            cause = "too many redirects"
            redirect_location = response.get_redirect_location()
            status = response.status
    
        else:
            # Incrementing because of a server error like a 500 in
            # status_forcelist and the given method is in the allowed_methods
            cause = ResponseError.GENERIC_ERROR
            if response and response.status:
                if status_count is not None:
                    status_count -= 1
                cause = ResponseError.SPECIFIC_ERROR.format(status_code=response.status)
                status = response.status
    
        history = self.history + (
            RequestHistory(method, url, error, status, redirect_location),
        )
    
        new_retry = self.new(
            total=total,
            connect=connect,
            read=read,
            redirect=redirect,
            status=status_count,
            other=other,
            history=history,
        )
    
        if new_retry.is_exhausted():
>           raise MaxRetryError(_pool, url, error or ResponseError(cause))
E           urllib3.exceptions.MaxRetryError: HTTPSConnectionPool(host='scicrunch.org', port=443): Max retries exceeded with url: /api/1/elastic/SPARC_PortalDatasets_dev/_search?q=heart&size=10&from=0&api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7f754a57fbb0>: Failed to establish a new connection: [Errno 110] Connection timed out'))

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/util/retry.py:574: MaxRetryError

During handling of the above exception, another exception occurred:

client = <FlaskClient <Flask 'app.main'>>

    def test_scicrunch_search(client):
>       r = client.get('/search/heart')

tests/test_scicrunch.py:113: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/werkzeug/test.py:1029: in get
    return self.open(*args, **kw)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/testing.py:222: in open
    return Client.open(
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/werkzeug/test.py:993: in open
    response = self.run_wsgi_app(environ.copy(), buffered=buffered)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/werkzeug/test.py:884: in run_wsgi_app
    rv = run_wsgi_app(self.application, environ, buffered=buffered)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/werkzeug/test.py:1119: in run_wsgi_app
    app_rv = app(environ, start_response)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:2463: in __call__
    return self.wsgi_app(environ, start_response)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:2449: in wsgi_app
    response = self.handle_exception(e)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask_cors/extension.py:161: in wrapped_function
    return cors_after_request(app.make_response(f(*args, **kwargs)))
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1866: in handle_exception
    reraise(exc_type, exc_value, tb)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/_compat.py:39: in reraise
    raise value
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:2446: in wsgi_app
    response = self.full_dispatch_request()
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1951: in full_dispatch_request
    rv = self.handle_user_exception(e)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask_cors/extension.py:161: in wrapped_function
    return cors_after_request(app.make_response(f(*args, **kwargs)))
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1820: in handle_user_exception
    reraise(exc_type, exc_value, tb)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/_compat.py:39: in reraise
    raise value
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1949: in full_dispatch_request
    rv = self.dispatch_request()
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1935: in dispatch_request
    return self.view_functions[rule.endpoint](**req.view_args)
app/main.py:686: in kb_search
    response = requests.get(f'{Config.SCI_CRUNCH_HOST}/_search?q={query}&size={limit}&from={start}&api_key={Config.KNOWLEDGEBASE_KEY}')
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/api.py:76: in get
    return request('get', url, params=params, **kwargs)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/api.py:61: in request
    return session.request(method=method, url=url, **kwargs)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/sessions.py:542: in request
    resp = self.send(prep, **send_kwargs)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/sessions.py:655: in send
    r = adapter.send(request, **kwargs)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <requests.adapters.HTTPAdapter object at 0x7f754a588160>
request = <PreparedRequest [GET]>, stream = False
timeout = Timeout(connect=None, read=None, total=None), verify = True
cert = None, proxies = OrderedDict()

    def send(self, request, stream=False, timeout=None, verify=True, cert=None, proxies=None):
        """Sends PreparedRequest object. Returns Response object.
    
        :param request: The :class:`PreparedRequest <PreparedRequest>` being sent.
        :param stream: (optional) Whether to stream the request content.
        :param timeout: (optional) How long to wait for the server to send
            data before giving up, as a float, or a :ref:`(connect timeout,
            read timeout) <timeouts>` tuple.
        :type timeout: float or tuple or urllib3 Timeout object
        :param verify: (optional) Either a boolean, in which case it controls whether
            we verify the server's TLS certificate, or a string, in which case it
            must be a path to a CA bundle to use
        :param cert: (optional) Any user-provided SSL certificate to be trusted.
        :param proxies: (optional) The proxies dictionary to apply to the request.
        :rtype: requests.Response
        """
    
        try:
            conn = self.get_connection(request.url, proxies)
        except LocationValueError as e:
            raise InvalidURL(e, request=request)
    
        self.cert_verify(conn, request.url, verify, cert)
        url = self.request_url(request, proxies)
        self.add_headers(request, stream=stream, timeout=timeout, verify=verify, cert=cert, proxies=proxies)
    
        chunked = not (request.body is None or 'Content-Length' in request.headers)
    
        if isinstance(timeout, tuple):
            try:
                connect, read = timeout
                timeout = TimeoutSauce(connect=connect, read=read)
            except ValueError as e:
                # this may raise a string formatting error.
                err = ("Invalid timeout {}. Pass a (connect, read) "
                       "timeout tuple, or a single float to set "
                       "both timeouts to the same value".format(timeout))
                raise ValueError(err)
        elif isinstance(timeout, TimeoutSauce):
            pass
        else:
            timeout = TimeoutSauce(connect=timeout, read=timeout)
    
        try:
            if not chunked:
                resp = conn.urlopen(
                    method=request.method,
                    url=url,
                    body=request.body,
                    headers=request.headers,
                    redirect=False,
                    assert_same_host=False,
                    preload_content=False,
                    decode_content=False,
                    retries=self.max_retries,
                    timeout=timeout
                )
    
            # Send the request.
            else:
                if hasattr(conn, 'proxy_pool'):
                    conn = conn.proxy_pool
    
                low_conn = conn._get_conn(timeout=DEFAULT_POOL_TIMEOUT)
    
                try:
                    low_conn.putrequest(request.method,
                                        url,
                                        skip_accept_encoding=True)
    
                    for header, value in request.headers.items():
                        low_conn.putheader(header, value)
    
                    low_conn.endheaders()
    
                    for i in request.body:
                        low_conn.send(hex(len(i))[2:].encode('utf-8'))
                        low_conn.send(b'\r\n')
                        low_conn.send(i)
                        low_conn.send(b'\r\n')
                    low_conn.send(b'0\r\n\r\n')
    
                    # Receive the response from the server
                    try:
                        # For Python 2.7, use buffering of HTTP responses
                        r = low_conn.getresponse(buffering=True)
                    except TypeError:
                        # For compatibility with Python 3.3+
                        r = low_conn.getresponse()
    
                    resp = HTTPResponse.from_httplib(
                        r,
                        pool=conn,
                        connection=low_conn,
                        preload_content=False,
                        decode_content=False
                    )
                except:
                    # If we hit any problems here, clean up the connection.
                    # Then, reraise so that we can handle the actual exception.
                    low_conn.close()
                    raise
    
        except (ProtocolError, socket.error) as err:
            raise ConnectionError(err, request=request)
    
        except MaxRetryError as e:
            if isinstance(e.reason, ConnectTimeoutError):
                # TODO: Remove this in 3.0.0: see #2811
                if not isinstance(e.reason, NewConnectionError):
                    raise ConnectTimeout(e, request=request)
    
            if isinstance(e.reason, ResponseError):
                raise RetryError(e, request=request)
    
            if isinstance(e.reason, _ProxyError):
                raise ProxyError(e, request=request)
    
            if isinstance(e.reason, _SSLError):
                # This branch is for urllib3 v1.22 and later.
                raise SSLError(e, request=request)
    
>           raise ConnectionError(e, request=request)
E           requests.exceptions.ConnectionError: HTTPSConnectionPool(host='scicrunch.org', port=443): Max retries exceeded with url: /api/1/elastic/SPARC_PortalDatasets_dev/_search?q=heart&size=10&from=0&api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7f754a57fbb0>: Failed to establish a new connection: [Errno 110] Connection timed out'))

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/adapters.py:516: ConnectionError
___________________________ test_scicrunch_all_data ____________________________

self = <urllib3.connection.HTTPSConnection object at 0x7f754a561a90>

    def _new_conn(self):
        """Establish a socket connection and set nodelay settings on it.
    
        :return: New socket connection.
        """
        extra_kw = {}
        if self.source_address:
            extra_kw["source_address"] = self.source_address
    
        if self.socket_options:
            extra_kw["socket_options"] = self.socket_options
    
        try:
>           conn = connection.create_connection(
                (self._dns_host, self.port), self.timeout, **extra_kw
            )

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connection.py:169: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

address = ('scicrunch.org', 443), timeout = None, source_address = None
socket_options = [(6, 1, 1)]

    def create_connection(
        address,
        timeout=socket._GLOBAL_DEFAULT_TIMEOUT,
        source_address=None,
        socket_options=None,
    ):
        """Connect to *address* and return the socket object.
    
        Convenience function.  Connect to *address* (a 2-tuple ``(host,
        port)``) and return the socket object.  Passing the optional
        *timeout* parameter will set the timeout on the socket instance
        before attempting to connect.  If no *timeout* is supplied, the
        global default timeout setting returned by :func:`socket.getdefaulttimeout`
        is used.  If *source_address* is set it must be a tuple of (host, port)
        for the socket to bind as a source address before making the connection.
        An host of '' or port 0 tells the OS to use the default.
        """
    
        host, port = address
        if host.startswith("["):
            host = host.strip("[]")
        err = None
    
        # Using the value from allowed_gai_family() in the context of getaddrinfo lets
        # us select whether to work with IPv4 DNS records, IPv6 records, or both.
        # The original create_connection function always returns all records.
        family = allowed_gai_family()
    
        try:
            host.encode("idna")
        except UnicodeError:
            return six.raise_from(
                LocationParseError(u"'%s', label empty or too long" % host), None
            )
    
        for res in socket.getaddrinfo(host, port, family, socket.SOCK_STREAM):
            af, socktype, proto, canonname, sa = res
            sock = None
            try:
                sock = socket.socket(af, socktype, proto)
    
                # If provided, set socket level options before connecting.
                _set_socket_options(sock, socket_options)
    
                if timeout is not socket._GLOBAL_DEFAULT_TIMEOUT:
                    sock.settimeout(timeout)
                if source_address:
                    sock.bind(source_address)
                sock.connect(sa)
                return sock
    
            except socket.error as e:
                err = e
                if sock is not None:
                    sock.close()
                    sock = None
    
        if err is not None:
>           raise err

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/util/connection.py:96: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

address = ('scicrunch.org', 443), timeout = None, source_address = None
socket_options = [(6, 1, 1)]

    def create_connection(
        address,
        timeout=socket._GLOBAL_DEFAULT_TIMEOUT,
        source_address=None,
        socket_options=None,
    ):
        """Connect to *address* and return the socket object.
    
        Convenience function.  Connect to *address* (a 2-tuple ``(host,
        port)``) and return the socket object.  Passing the optional
        *timeout* parameter will set the timeout on the socket instance
        before attempting to connect.  If no *timeout* is supplied, the
        global default timeout setting returned by :func:`socket.getdefaulttimeout`
        is used.  If *source_address* is set it must be a tuple of (host, port)
        for the socket to bind as a source address before making the connection.
        An host of '' or port 0 tells the OS to use the default.
        """
    
        host, port = address
        if host.startswith("["):
            host = host.strip("[]")
        err = None
    
        # Using the value from allowed_gai_family() in the context of getaddrinfo lets
        # us select whether to work with IPv4 DNS records, IPv6 records, or both.
        # The original create_connection function always returns all records.
        family = allowed_gai_family()
    
        try:
            host.encode("idna")
        except UnicodeError:
            return six.raise_from(
                LocationParseError(u"'%s', label empty or too long" % host), None
            )
    
        for res in socket.getaddrinfo(host, port, family, socket.SOCK_STREAM):
            af, socktype, proto, canonname, sa = res
            sock = None
            try:
                sock = socket.socket(af, socktype, proto)
    
                # If provided, set socket level options before connecting.
                _set_socket_options(sock, socket_options)
    
                if timeout is not socket._GLOBAL_DEFAULT_TIMEOUT:
                    sock.settimeout(timeout)
                if source_address:
                    sock.bind(source_address)
>               sock.connect(sa)
E               TimeoutError: [Errno 110] Connection timed out

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/util/connection.py:86: TimeoutError

During handling of the above exception, another exception occurred:

self = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754a558970>
method = 'POST'
url = '/api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf'
body = b'{"size": 10, "from": 0}'
headers = {'User-Agent': 'python-requests/2.25.1', 'Accept-Encoding': 'gzip, deflate', 'Accept': '*/*', 'Connection': 'keep-alive', 'Content-Length': '23', 'Content-Type': 'application/json'}
retries = Retry(total=0, connect=None, read=False, redirect=None, status=None)
redirect = False, assert_same_host = False
timeout = Timeout(connect=None, read=None, total=None), pool_timeout = None
release_conn = False, chunked = False, body_pos = None
response_kw = {'decode_content': False, 'preload_content': False}
parsed_url = Url(scheme=None, auth=None, host=None, port=None, path='/api/1/elastic/SPARC_PortalDatasets_dev/_search', query='api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf', fragment=None)
destination_scheme = None, conn = None, release_this_conn = True
http_tunnel_required = False, err = None, clean_exit = False

    def urlopen(
        self,
        method,
        url,
        body=None,
        headers=None,
        retries=None,
        redirect=True,
        assert_same_host=True,
        timeout=_Default,
        pool_timeout=None,
        release_conn=None,
        chunked=False,
        body_pos=None,
        **response_kw
    ):
        """
        Get a connection from the pool and perform an HTTP request. This is the
        lowest level call for making a request, so you'll need to specify all
        the raw details.
    
        .. note::
    
           More commonly, it's appropriate to use a convenience method provided
           by :class:`.RequestMethods`, such as :meth:`request`.
    
        .. note::
    
           `release_conn` will only behave as expected if
           `preload_content=False` because we want to make
           `preload_content=False` the default behaviour someday soon without
           breaking backwards compatibility.
    
        :param method:
            HTTP request method (such as GET, POST, PUT, etc.)
    
        :param url:
            The URL to perform the request on.
    
        :param body:
            Data to send in the request body, either :class:`str`, :class:`bytes`,
            an iterable of :class:`str`/:class:`bytes`, or a file-like object.
    
        :param headers:
            Dictionary of custom headers to send, such as User-Agent,
            If-None-Match, etc. If None, pool headers are used. If provided,
            these headers completely replace any pool-specific headers.
    
        :param retries:
            Configure the number of retries to allow before raising a
            :class:`~urllib3.exceptions.MaxRetryError` exception.
    
            Pass ``None`` to retry until you receive a response. Pass a
            :class:`~urllib3.util.retry.Retry` object for fine-grained control
            over different types of retries.
            Pass an integer number to retry connection errors that many times,
            but no other types of errors. Pass zero to never retry.
    
            If ``False``, then retries are disabled and any exception is raised
            immediately. Also, instead of raising a MaxRetryError on redirects,
            the redirect response will be returned.
    
        :type retries: :class:`~urllib3.util.retry.Retry`, False, or an int.
    
        :param redirect:
            If True, automatically handle redirects (status codes 301, 302,
            303, 307, 308). Each redirect counts as a retry. Disabling retries
            will disable redirect, too.
    
        :param assert_same_host:
            If ``True``, will make sure that the host of the pool requests is
            consistent else will raise HostChangedError. When ``False``, you can
            use the pool on an HTTP proxy and request foreign hosts.
    
        :param timeout:
            If specified, overrides the default timeout for this one
            request. It may be a float (in seconds) or an instance of
            :class:`urllib3.util.Timeout`.
    
        :param pool_timeout:
            If set and the pool is set to block=True, then this method will
            block for ``pool_timeout`` seconds and raise EmptyPoolError if no
            connection is available within the time period.
    
        :param release_conn:
            If False, then the urlopen call will not release the connection
            back into the pool once a response is received (but will release if
            you read the entire contents of the response such as when
            `preload_content=True`). This is useful if you're not preloading
            the response's content immediately. You will need to call
            ``r.release_conn()`` on the response ``r`` to return the connection
            back into the pool. If None, it takes the value of
            ``response_kw.get('preload_content', True)``.
    
        :param chunked:
            If True, urllib3 will send the body using chunked transfer
            encoding. Otherwise, urllib3 will send the body using the standard
            content-length form. Defaults to False.
    
        :param int body_pos:
            Position to seek to in file-like body in the event of a retry or
            redirect. Typically this won't need to be set because urllib3 will
            auto-populate the value when needed.
    
        :param \\**response_kw:
            Additional parameters are passed to
            :meth:`urllib3.response.HTTPResponse.from_httplib`
        """
    
        parsed_url = parse_url(url)
        destination_scheme = parsed_url.scheme
    
        if headers is None:
            headers = self.headers
    
        if not isinstance(retries, Retry):
            retries = Retry.from_int(retries, redirect=redirect, default=self.retries)
    
        if release_conn is None:
            release_conn = response_kw.get("preload_content", True)
    
        # Check host
        if assert_same_host and not self.is_same_host(url):
            raise HostChangedError(self, url, retries)
    
        # Ensure that the URL we're connecting to is properly encoded
        if url.startswith("/"):
            url = six.ensure_str(_encode_target(url))
        else:
            url = six.ensure_str(parsed_url.url)
    
        conn = None
    
        # Track whether `conn` needs to be released before
        # returning/raising/recursing. Update this variable if necessary, and
        # leave `release_conn` constant throughout the function. That way, if
        # the function recurses, the original value of `release_conn` will be
        # passed down into the recursive call, and its value will be respected.
        #
        # See issue #651 [1] for details.
        #
        # [1] <https://github.com/urllib3/urllib3/issues/651>
        release_this_conn = release_conn
    
        http_tunnel_required = connection_requires_http_tunnel(
            self.proxy, self.proxy_config, destination_scheme
        )
    
        # Merge the proxy headers. Only done when not using HTTP CONNECT. We
        # have to copy the headers dict so we can safely change it without those
        # changes being reflected in anyone else's copy.
        if not http_tunnel_required:
            headers = headers.copy()
            headers.update(self.proxy_headers)
    
        # Must keep the exception bound to a separate variable or else Python 3
        # complains about UnboundLocalError.
        err = None
    
        # Keep track of whether we cleanly exited the except block. This
        # ensures we do proper cleanup in finally.
        clean_exit = False
    
        # Rewind body position, if needed. Record current position
        # for future rewinds in the event of a redirect/retry.
        body_pos = set_file_position(body, body_pos)
    
        try:
            # Request a connection from the queue.
            timeout_obj = self._get_timeout(timeout)
            conn = self._get_conn(timeout=pool_timeout)
    
            conn.timeout = timeout_obj.connect_timeout
    
            is_new_proxy_conn = self.proxy is not None and not getattr(
                conn, "sock", None
            )
            if is_new_proxy_conn and http_tunnel_required:
                self._prepare_proxy(conn)
    
            # Make the request on the httplib connection object.
>           httplib_response = self._make_request(
                conn,
                method,
                url,
                timeout=timeout_obj,
                body=body,
                headers=headers,
                chunked=chunked,
            )

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py:699: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754a558970>
conn = <urllib3.connection.HTTPSConnection object at 0x7f754a561a90>
method = 'POST'
url = '/api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf'
timeout = Timeout(connect=None, read=None, total=None), chunked = False
httplib_request_kw = {'body': b'{"size": 10, "from": 0}', 'headers': {'User-Agent': 'python-requests/2.25.1', 'Accept-Encoding': 'gzip, deflate', 'Accept': '*/*', 'Connection': 'keep-alive', 'Content-Length': '23', 'Content-Type': 'application/json'}}
timeout_obj = Timeout(connect=None, read=None, total=None)

    def _make_request(
        self, conn, method, url, timeout=_Default, chunked=False, **httplib_request_kw
    ):
        """
        Perform a request on a given urllib connection object taken from our
        pool.
    
        :param conn:
            a connection from one of our connection pools
    
        :param timeout:
            Socket timeout in seconds for the request. This can be a
            float or integer, which will set the same timeout value for
            the socket connect and the socket read, or an instance of
            :class:`urllib3.util.Timeout`, which gives you more fine-grained
            control over your timeouts.
        """
        self.num_requests += 1
    
        timeout_obj = self._get_timeout(timeout)
        timeout_obj.start_connect()
        conn.timeout = timeout_obj.connect_timeout
    
        # Trigger any extra validation we need to do.
        try:
>           self._validate_conn(conn)

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py:382: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754a558970>
conn = <urllib3.connection.HTTPSConnection object at 0x7f754a561a90>

    def _validate_conn(self, conn):
        """
        Called right before a request is made, after the socket is created.
        """
        super(HTTPSConnectionPool, self)._validate_conn(conn)
    
        # Force connect early to allow us to validate the connection.
        if not getattr(conn, "sock", None):  # AppEngine might not have  `.sock`
>           conn.connect()

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py:1010: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connection.HTTPSConnection object at 0x7f754a561a90>

    def connect(self):
        # Add certificate verification
>       conn = self._new_conn()

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connection.py:353: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connection.HTTPSConnection object at 0x7f754a561a90>

    def _new_conn(self):
        """Establish a socket connection and set nodelay settings on it.
    
        :return: New socket connection.
        """
        extra_kw = {}
        if self.source_address:
            extra_kw["source_address"] = self.source_address
    
        if self.socket_options:
            extra_kw["socket_options"] = self.socket_options
    
        try:
            conn = connection.create_connection(
                (self._dns_host, self.port), self.timeout, **extra_kw
            )
    
        except SocketTimeout:
            raise ConnectTimeoutError(
                self,
                "Connection to %s timed out. (connect timeout=%s)"
                % (self.host, self.timeout),
            )
    
        except SocketError as e:
>           raise NewConnectionError(
                self, "Failed to establish a new connection: %s" % e
            )
E           urllib3.exceptions.NewConnectionError: <urllib3.connection.HTTPSConnection object at 0x7f754a561a90>: Failed to establish a new connection: [Errno 110] Connection timed out

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connection.py:181: NewConnectionError

During handling of the above exception, another exception occurred:

self = <requests.adapters.HTTPAdapter object at 0x7f754a558100>
request = <PreparedRequest [POST]>, stream = False
timeout = Timeout(connect=None, read=None, total=None), verify = True
cert = None, proxies = OrderedDict()

    def send(self, request, stream=False, timeout=None, verify=True, cert=None, proxies=None):
        """Sends PreparedRequest object. Returns Response object.
    
        :param request: The :class:`PreparedRequest <PreparedRequest>` being sent.
        :param stream: (optional) Whether to stream the request content.
        :param timeout: (optional) How long to wait for the server to send
            data before giving up, as a float, or a :ref:`(connect timeout,
            read timeout) <timeouts>` tuple.
        :type timeout: float or tuple or urllib3 Timeout object
        :param verify: (optional) Either a boolean, in which case it controls whether
            we verify the server's TLS certificate, or a string, in which case it
            must be a path to a CA bundle to use
        :param cert: (optional) Any user-provided SSL certificate to be trusted.
        :param proxies: (optional) The proxies dictionary to apply to the request.
        :rtype: requests.Response
        """
    
        try:
            conn = self.get_connection(request.url, proxies)
        except LocationValueError as e:
            raise InvalidURL(e, request=request)
    
        self.cert_verify(conn, request.url, verify, cert)
        url = self.request_url(request, proxies)
        self.add_headers(request, stream=stream, timeout=timeout, verify=verify, cert=cert, proxies=proxies)
    
        chunked = not (request.body is None or 'Content-Length' in request.headers)
    
        if isinstance(timeout, tuple):
            try:
                connect, read = timeout
                timeout = TimeoutSauce(connect=connect, read=read)
            except ValueError as e:
                # this may raise a string formatting error.
                err = ("Invalid timeout {}. Pass a (connect, read) "
                       "timeout tuple, or a single float to set "
                       "both timeouts to the same value".format(timeout))
                raise ValueError(err)
        elif isinstance(timeout, TimeoutSauce):
            pass
        else:
            timeout = TimeoutSauce(connect=timeout, read=timeout)
    
        try:
            if not chunked:
>               resp = conn.urlopen(
                    method=request.method,
                    url=url,
                    body=request.body,
                    headers=request.headers,
                    redirect=False,
                    assert_same_host=False,
                    preload_content=False,
                    decode_content=False,
                    retries=self.max_retries,
                    timeout=timeout
                )

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/adapters.py:439: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754a558970>
method = 'POST'
url = '/api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf'
body = b'{"size": 10, "from": 0}'
headers = {'User-Agent': 'python-requests/2.25.1', 'Accept-Encoding': 'gzip, deflate', 'Accept': '*/*', 'Connection': 'keep-alive', 'Content-Length': '23', 'Content-Type': 'application/json'}
retries = Retry(total=0, connect=None, read=False, redirect=None, status=None)
redirect = False, assert_same_host = False
timeout = Timeout(connect=None, read=None, total=None), pool_timeout = None
release_conn = False, chunked = False, body_pos = None
response_kw = {'decode_content': False, 'preload_content': False}
parsed_url = Url(scheme=None, auth=None, host=None, port=None, path='/api/1/elastic/SPARC_PortalDatasets_dev/_search', query='api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf', fragment=None)
destination_scheme = None, conn = None, release_this_conn = True
http_tunnel_required = False, err = None, clean_exit = False

    def urlopen(
        self,
        method,
        url,
        body=None,
        headers=None,
        retries=None,
        redirect=True,
        assert_same_host=True,
        timeout=_Default,
        pool_timeout=None,
        release_conn=None,
        chunked=False,
        body_pos=None,
        **response_kw
    ):
        """
        Get a connection from the pool and perform an HTTP request. This is the
        lowest level call for making a request, so you'll need to specify all
        the raw details.
    
        .. note::
    
           More commonly, it's appropriate to use a convenience method provided
           by :class:`.RequestMethods`, such as :meth:`request`.
    
        .. note::
    
           `release_conn` will only behave as expected if
           `preload_content=False` because we want to make
           `preload_content=False` the default behaviour someday soon without
           breaking backwards compatibility.
    
        :param method:
            HTTP request method (such as GET, POST, PUT, etc.)
    
        :param url:
            The URL to perform the request on.
    
        :param body:
            Data to send in the request body, either :class:`str`, :class:`bytes`,
            an iterable of :class:`str`/:class:`bytes`, or a file-like object.
    
        :param headers:
            Dictionary of custom headers to send, such as User-Agent,
            If-None-Match, etc. If None, pool headers are used. If provided,
            these headers completely replace any pool-specific headers.
    
        :param retries:
            Configure the number of retries to allow before raising a
            :class:`~urllib3.exceptions.MaxRetryError` exception.
    
            Pass ``None`` to retry until you receive a response. Pass a
            :class:`~urllib3.util.retry.Retry` object for fine-grained control
            over different types of retries.
            Pass an integer number to retry connection errors that many times,
            but no other types of errors. Pass zero to never retry.
    
            If ``False``, then retries are disabled and any exception is raised
            immediately. Also, instead of raising a MaxRetryError on redirects,
            the redirect response will be returned.
    
        :type retries: :class:`~urllib3.util.retry.Retry`, False, or an int.
    
        :param redirect:
            If True, automatically handle redirects (status codes 301, 302,
            303, 307, 308). Each redirect counts as a retry. Disabling retries
            will disable redirect, too.
    
        :param assert_same_host:
            If ``True``, will make sure that the host of the pool requests is
            consistent else will raise HostChangedError. When ``False``, you can
            use the pool on an HTTP proxy and request foreign hosts.
    
        :param timeout:
            If specified, overrides the default timeout for this one
            request. It may be a float (in seconds) or an instance of
            :class:`urllib3.util.Timeout`.
    
        :param pool_timeout:
            If set and the pool is set to block=True, then this method will
            block for ``pool_timeout`` seconds and raise EmptyPoolError if no
            connection is available within the time period.
    
        :param release_conn:
            If False, then the urlopen call will not release the connection
            back into the pool once a response is received (but will release if
            you read the entire contents of the response such as when
            `preload_content=True`). This is useful if you're not preloading
            the response's content immediately. You will need to call
            ``r.release_conn()`` on the response ``r`` to return the connection
            back into the pool. If None, it takes the value of
            ``response_kw.get('preload_content', True)``.
    
        :param chunked:
            If True, urllib3 will send the body using chunked transfer
            encoding. Otherwise, urllib3 will send the body using the standard
            content-length form. Defaults to False.
    
        :param int body_pos:
            Position to seek to in file-like body in the event of a retry or
            redirect. Typically this won't need to be set because urllib3 will
            auto-populate the value when needed.
    
        :param \\**response_kw:
            Additional parameters are passed to
            :meth:`urllib3.response.HTTPResponse.from_httplib`
        """
    
        parsed_url = parse_url(url)
        destination_scheme = parsed_url.scheme
    
        if headers is None:
            headers = self.headers
    
        if not isinstance(retries, Retry):
            retries = Retry.from_int(retries, redirect=redirect, default=self.retries)
    
        if release_conn is None:
            release_conn = response_kw.get("preload_content", True)
    
        # Check host
        if assert_same_host and not self.is_same_host(url):
            raise HostChangedError(self, url, retries)
    
        # Ensure that the URL we're connecting to is properly encoded
        if url.startswith("/"):
            url = six.ensure_str(_encode_target(url))
        else:
            url = six.ensure_str(parsed_url.url)
    
        conn = None
    
        # Track whether `conn` needs to be released before
        # returning/raising/recursing. Update this variable if necessary, and
        # leave `release_conn` constant throughout the function. That way, if
        # the function recurses, the original value of `release_conn` will be
        # passed down into the recursive call, and its value will be respected.
        #
        # See issue #651 [1] for details.
        #
        # [1] <https://github.com/urllib3/urllib3/issues/651>
        release_this_conn = release_conn
    
        http_tunnel_required = connection_requires_http_tunnel(
            self.proxy, self.proxy_config, destination_scheme
        )
    
        # Merge the proxy headers. Only done when not using HTTP CONNECT. We
        # have to copy the headers dict so we can safely change it without those
        # changes being reflected in anyone else's copy.
        if not http_tunnel_required:
            headers = headers.copy()
            headers.update(self.proxy_headers)
    
        # Must keep the exception bound to a separate variable or else Python 3
        # complains about UnboundLocalError.
        err = None
    
        # Keep track of whether we cleanly exited the except block. This
        # ensures we do proper cleanup in finally.
        clean_exit = False
    
        # Rewind body position, if needed. Record current position
        # for future rewinds in the event of a redirect/retry.
        body_pos = set_file_position(body, body_pos)
    
        try:
            # Request a connection from the queue.
            timeout_obj = self._get_timeout(timeout)
            conn = self._get_conn(timeout=pool_timeout)
    
            conn.timeout = timeout_obj.connect_timeout
    
            is_new_proxy_conn = self.proxy is not None and not getattr(
                conn, "sock", None
            )
            if is_new_proxy_conn and http_tunnel_required:
                self._prepare_proxy(conn)
    
            # Make the request on the httplib connection object.
            httplib_response = self._make_request(
                conn,
                method,
                url,
                timeout=timeout_obj,
                body=body,
                headers=headers,
                chunked=chunked,
            )
    
            # If we're going to release the connection in ``finally:``, then
            # the response doesn't need to know about the connection. Otherwise
            # it will also try to release it and we'll have a double-release
            # mess.
            response_conn = conn if not release_conn else None
    
            # Pass method to Response for length checking
            response_kw["request_method"] = method
    
            # Import httplib's response into our own wrapper object
            response = self.ResponseCls.from_httplib(
                httplib_response,
                pool=self,
                connection=response_conn,
                retries=retries,
                **response_kw
            )
    
            # Everything went great!
            clean_exit = True
    
        except EmptyPoolError:
            # Didn't get a connection from the pool, no need to clean up
            clean_exit = True
            release_this_conn = False
            raise
    
        except (
            TimeoutError,
            HTTPException,
            SocketError,
            ProtocolError,
            BaseSSLError,
            SSLError,
            CertificateError,
        ) as e:
            # Discard the connection for these exceptions. It will be
            # replaced during the next _get_conn() call.
            clean_exit = False
            if isinstance(e, (BaseSSLError, CertificateError)):
                e = SSLError(e)
            elif isinstance(e, (SocketError, NewConnectionError)) and self.proxy:
                e = ProxyError("Cannot connect to proxy.", e)
            elif isinstance(e, (SocketError, HTTPException)):
                e = ProtocolError("Connection aborted.", e)
    
>           retries = retries.increment(
                method, url, error=e, _pool=self, _stacktrace=sys.exc_info()[2]
            )

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py:755: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = Retry(total=0, connect=None, read=False, redirect=None, status=None)
method = 'POST'
url = '/api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf'
response = None
error = NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7f754a561a90>: Failed to establish a new connection: [Errno 110] Connection timed out')
_pool = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754a558970>
_stacktrace = <traceback object at 0x7f754a576a40>

    def increment(
        self,
        method=None,
        url=None,
        response=None,
        error=None,
        _pool=None,
        _stacktrace=None,
    ):
        """Return a new Retry object with incremented retry counters.
    
        :param response: A response object, or None, if the server did not
            return a response.
        :type response: :class:`~urllib3.response.HTTPResponse`
        :param Exception error: An error encountered during the request, or
            None if the response was received successfully.
    
        :return: A new ``Retry`` object.
        """
        if self.total is False and error:
            # Disabled, indicate to re-raise the error.
            raise six.reraise(type(error), error, _stacktrace)
    
        total = self.total
        if total is not None:
            total -= 1
    
        connect = self.connect
        read = self.read
        redirect = self.redirect
        status_count = self.status
        other = self.other
        cause = "unknown"
        status = None
        redirect_location = None
    
        if error and self._is_connection_error(error):
            # Connect retry?
            if connect is False:
                raise six.reraise(type(error), error, _stacktrace)
            elif connect is not None:
                connect -= 1
    
        elif error and self._is_read_error(error):
            # Read retry?
            if read is False or not self._is_method_retryable(method):
                raise six.reraise(type(error), error, _stacktrace)
            elif read is not None:
                read -= 1
    
        elif error:
            # Other retry?
            if other is not None:
                other -= 1
    
        elif response and response.get_redirect_location():
            # Redirect retry?
            if redirect is not None:
                redirect -= 1
            cause = "too many redirects"
            redirect_location = response.get_redirect_location()
            status = response.status
    
        else:
            # Incrementing because of a server error like a 500 in
            # status_forcelist and the given method is in the allowed_methods
            cause = ResponseError.GENERIC_ERROR
            if response and response.status:
                if status_count is not None:
                    status_count -= 1
                cause = ResponseError.SPECIFIC_ERROR.format(status_code=response.status)
                status = response.status
    
        history = self.history + (
            RequestHistory(method, url, error, status, redirect_location),
        )
    
        new_retry = self.new(
            total=total,
            connect=connect,
            read=read,
            redirect=redirect,
            status=status_count,
            other=other,
            history=history,
        )
    
        if new_retry.is_exhausted():
>           raise MaxRetryError(_pool, url, error or ResponseError(cause))
E           urllib3.exceptions.MaxRetryError: HTTPSConnectionPool(host='scicrunch.org', port=443): Max retries exceeded with url: /api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7f754a561a90>: Failed to establish a new connection: [Errno 110] Connection timed out'))

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/util/retry.py:574: MaxRetryError

During handling of the above exception, another exception occurred:

client = <FlaskClient <Flask 'app.main'>>

    def test_scicrunch_all_data(client):
>       r = client.get('/filter-search/')

tests/test_scicrunch.py:119: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/werkzeug/test.py:1029: in get
    return self.open(*args, **kw)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/testing.py:222: in open
    return Client.open(
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/werkzeug/test.py:993: in open
    response = self.run_wsgi_app(environ.copy(), buffered=buffered)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/werkzeug/test.py:884: in run_wsgi_app
    rv = run_wsgi_app(self.application, environ, buffered=buffered)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/werkzeug/test.py:1119: in run_wsgi_app
    app_rv = app(environ, start_response)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:2463: in __call__
    return self.wsgi_app(environ, start_response)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:2449: in wsgi_app
    response = self.handle_exception(e)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask_cors/extension.py:161: in wrapped_function
    return cors_after_request(app.make_response(f(*args, **kwargs)))
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1866: in handle_exception
    reraise(exc_type, exc_value, tb)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/_compat.py:39: in reraise
    raise value
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:2446: in wsgi_app
    response = self.full_dispatch_request()
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1951: in full_dispatch_request
    rv = self.handle_user_exception(e)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask_cors/extension.py:161: in wrapped_function
    return cors_after_request(app.make_response(f(*args, **kwargs)))
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1820: in handle_user_exception
    reraise(exc_type, exc_value, tb)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/_compat.py:39: in reraise
    raise value
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1949: in full_dispatch_request
    rv = self.dispatch_request()
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1935: in dispatch_request
    return self.view_functions[rule.endpoint](**req.view_args)
app/main.py:707: in filter_search
    response = requests.post(
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/api.py:119: in post
    return request('post', url, data=data, json=json, **kwargs)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/api.py:61: in request
    return session.request(method=method, url=url, **kwargs)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/sessions.py:542: in request
    resp = self.send(prep, **send_kwargs)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/sessions.py:655: in send
    r = adapter.send(request, **kwargs)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <requests.adapters.HTTPAdapter object at 0x7f754a558100>
request = <PreparedRequest [POST]>, stream = False
timeout = Timeout(connect=None, read=None, total=None), verify = True
cert = None, proxies = OrderedDict()

    def send(self, request, stream=False, timeout=None, verify=True, cert=None, proxies=None):
        """Sends PreparedRequest object. Returns Response object.
    
        :param request: The :class:`PreparedRequest <PreparedRequest>` being sent.
        :param stream: (optional) Whether to stream the request content.
        :param timeout: (optional) How long to wait for the server to send
            data before giving up, as a float, or a :ref:`(connect timeout,
            read timeout) <timeouts>` tuple.
        :type timeout: float or tuple or urllib3 Timeout object
        :param verify: (optional) Either a boolean, in which case it controls whether
            we verify the server's TLS certificate, or a string, in which case it
            must be a path to a CA bundle to use
        :param cert: (optional) Any user-provided SSL certificate to be trusted.
        :param proxies: (optional) The proxies dictionary to apply to the request.
        :rtype: requests.Response
        """
    
        try:
            conn = self.get_connection(request.url, proxies)
        except LocationValueError as e:
            raise InvalidURL(e, request=request)
    
        self.cert_verify(conn, request.url, verify, cert)
        url = self.request_url(request, proxies)
        self.add_headers(request, stream=stream, timeout=timeout, verify=verify, cert=cert, proxies=proxies)
    
        chunked = not (request.body is None or 'Content-Length' in request.headers)
    
        if isinstance(timeout, tuple):
            try:
                connect, read = timeout
                timeout = TimeoutSauce(connect=connect, read=read)
            except ValueError as e:
                # this may raise a string formatting error.
                err = ("Invalid timeout {}. Pass a (connect, read) "
                       "timeout tuple, or a single float to set "
                       "both timeouts to the same value".format(timeout))
                raise ValueError(err)
        elif isinstance(timeout, TimeoutSauce):
            pass
        else:
            timeout = TimeoutSauce(connect=timeout, read=timeout)
    
        try:
            if not chunked:
                resp = conn.urlopen(
                    method=request.method,
                    url=url,
                    body=request.body,
                    headers=request.headers,
                    redirect=False,
                    assert_same_host=False,
                    preload_content=False,
                    decode_content=False,
                    retries=self.max_retries,
                    timeout=timeout
                )
    
            # Send the request.
            else:
                if hasattr(conn, 'proxy_pool'):
                    conn = conn.proxy_pool
    
                low_conn = conn._get_conn(timeout=DEFAULT_POOL_TIMEOUT)
    
                try:
                    low_conn.putrequest(request.method,
                                        url,
                                        skip_accept_encoding=True)
    
                    for header, value in request.headers.items():
                        low_conn.putheader(header, value)
    
                    low_conn.endheaders()
    
                    for i in request.body:
                        low_conn.send(hex(len(i))[2:].encode('utf-8'))
                        low_conn.send(b'\r\n')
                        low_conn.send(i)
                        low_conn.send(b'\r\n')
                    low_conn.send(b'0\r\n\r\n')
    
                    # Receive the response from the server
                    try:
                        # For Python 2.7, use buffering of HTTP responses
                        r = low_conn.getresponse(buffering=True)
                    except TypeError:
                        # For compatibility with Python 3.3+
                        r = low_conn.getresponse()
    
                    resp = HTTPResponse.from_httplib(
                        r,
                        pool=conn,
                        connection=low_conn,
                        preload_content=False,
                        decode_content=False
                    )
                except:
                    # If we hit any problems here, clean up the connection.
                    # Then, reraise so that we can handle the actual exception.
                    low_conn.close()
                    raise
    
        except (ProtocolError, socket.error) as err:
            raise ConnectionError(err, request=request)
    
        except MaxRetryError as e:
            if isinstance(e.reason, ConnectTimeoutError):
                # TODO: Remove this in 3.0.0: see #2811
                if not isinstance(e.reason, NewConnectionError):
                    raise ConnectTimeout(e, request=request)
    
            if isinstance(e.reason, ResponseError):
                raise RetryError(e, request=request)
    
            if isinstance(e.reason, _ProxyError):
                raise ProxyError(e, request=request)
    
            if isinstance(e.reason, _SSLError):
                # This branch is for urllib3 v1.22 and later.
                raise SSLError(e, request=request)
    
>           raise ConnectionError(e, request=request)
E           requests.exceptions.ConnectionError: HTTPSConnectionPool(host='scicrunch.org', port=443): Max retries exceeded with url: /api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7f754a561a90>: Failed to establish a new connection: [Errno 110] Connection timed out'))

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/adapters.py:516: ConnectionError
____________________________ test_scicrunch_filter _____________________________

self = <urllib3.connection.HTTPSConnection object at 0x7f754ad68610>

    def _new_conn(self):
        """Establish a socket connection and set nodelay settings on it.
    
        :return: New socket connection.
        """
        extra_kw = {}
        if self.source_address:
            extra_kw["source_address"] = self.source_address
    
        if self.socket_options:
            extra_kw["socket_options"] = self.socket_options
    
        try:
>           conn = connection.create_connection(
                (self._dns_host, self.port), self.timeout, **extra_kw
            )

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connection.py:169: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

address = ('scicrunch.org', 443), timeout = None, source_address = None
socket_options = [(6, 1, 1)]

    def create_connection(
        address,
        timeout=socket._GLOBAL_DEFAULT_TIMEOUT,
        source_address=None,
        socket_options=None,
    ):
        """Connect to *address* and return the socket object.
    
        Convenience function.  Connect to *address* (a 2-tuple ``(host,
        port)``) and return the socket object.  Passing the optional
        *timeout* parameter will set the timeout on the socket instance
        before attempting to connect.  If no *timeout* is supplied, the
        global default timeout setting returned by :func:`socket.getdefaulttimeout`
        is used.  If *source_address* is set it must be a tuple of (host, port)
        for the socket to bind as a source address before making the connection.
        An host of '' or port 0 tells the OS to use the default.
        """
    
        host, port = address
        if host.startswith("["):
            host = host.strip("[]")
        err = None
    
        # Using the value from allowed_gai_family() in the context of getaddrinfo lets
        # us select whether to work with IPv4 DNS records, IPv6 records, or both.
        # The original create_connection function always returns all records.
        family = allowed_gai_family()
    
        try:
            host.encode("idna")
        except UnicodeError:
            return six.raise_from(
                LocationParseError(u"'%s', label empty or too long" % host), None
            )
    
        for res in socket.getaddrinfo(host, port, family, socket.SOCK_STREAM):
            af, socktype, proto, canonname, sa = res
            sock = None
            try:
                sock = socket.socket(af, socktype, proto)
    
                # If provided, set socket level options before connecting.
                _set_socket_options(sock, socket_options)
    
                if timeout is not socket._GLOBAL_DEFAULT_TIMEOUT:
                    sock.settimeout(timeout)
                if source_address:
                    sock.bind(source_address)
                sock.connect(sa)
                return sock
    
            except socket.error as e:
                err = e
                if sock is not None:
                    sock.close()
                    sock = None
    
        if err is not None:
>           raise err

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/util/connection.py:96: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

address = ('scicrunch.org', 443), timeout = None, source_address = None
socket_options = [(6, 1, 1)]

    def create_connection(
        address,
        timeout=socket._GLOBAL_DEFAULT_TIMEOUT,
        source_address=None,
        socket_options=None,
    ):
        """Connect to *address* and return the socket object.
    
        Convenience function.  Connect to *address* (a 2-tuple ``(host,
        port)``) and return the socket object.  Passing the optional
        *timeout* parameter will set the timeout on the socket instance
        before attempting to connect.  If no *timeout* is supplied, the
        global default timeout setting returned by :func:`socket.getdefaulttimeout`
        is used.  If *source_address* is set it must be a tuple of (host, port)
        for the socket to bind as a source address before making the connection.
        An host of '' or port 0 tells the OS to use the default.
        """
    
        host, port = address
        if host.startswith("["):
            host = host.strip("[]")
        err = None
    
        # Using the value from allowed_gai_family() in the context of getaddrinfo lets
        # us select whether to work with IPv4 DNS records, IPv6 records, or both.
        # The original create_connection function always returns all records.
        family = allowed_gai_family()
    
        try:
            host.encode("idna")
        except UnicodeError:
            return six.raise_from(
                LocationParseError(u"'%s', label empty or too long" % host), None
            )
    
        for res in socket.getaddrinfo(host, port, family, socket.SOCK_STREAM):
            af, socktype, proto, canonname, sa = res
            sock = None
            try:
                sock = socket.socket(af, socktype, proto)
    
                # If provided, set socket level options before connecting.
                _set_socket_options(sock, socket_options)
    
                if timeout is not socket._GLOBAL_DEFAULT_TIMEOUT:
                    sock.settimeout(timeout)
                if source_address:
                    sock.bind(source_address)
>               sock.connect(sa)
E               TimeoutError: [Errno 110] Connection timed out

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/util/connection.py:86: TimeoutError

During handling of the above exception, another exception occurred:

self = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754a628e50>
method = 'POST'
url = '/api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf'
body = b'{"size": 10, "from": 0, "query": {"query_string": {"query": "(anatomy.organ.name.aggregate:((heart)))"}}}'
headers = {'User-Agent': 'python-requests/2.25.1', 'Accept-Encoding': 'gzip, deflate', 'Accept': '*/*', 'Connection': 'keep-alive', 'Content-Length': '105', 'Content-Type': 'application/json'}
retries = Retry(total=0, connect=None, read=False, redirect=None, status=None)
redirect = False, assert_same_host = False
timeout = Timeout(connect=None, read=None, total=None), pool_timeout = None
release_conn = False, chunked = False, body_pos = None
response_kw = {'decode_content': False, 'preload_content': False}
parsed_url = Url(scheme=None, auth=None, host=None, port=None, path='/api/1/elastic/SPARC_PortalDatasets_dev/_search', query='api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf', fragment=None)
destination_scheme = None, conn = None, release_this_conn = True
http_tunnel_required = False, err = None, clean_exit = False

    def urlopen(
        self,
        method,
        url,
        body=None,
        headers=None,
        retries=None,
        redirect=True,
        assert_same_host=True,
        timeout=_Default,
        pool_timeout=None,
        release_conn=None,
        chunked=False,
        body_pos=None,
        **response_kw
    ):
        """
        Get a connection from the pool and perform an HTTP request. This is the
        lowest level call for making a request, so you'll need to specify all
        the raw details.
    
        .. note::
    
           More commonly, it's appropriate to use a convenience method provided
           by :class:`.RequestMethods`, such as :meth:`request`.
    
        .. note::
    
           `release_conn` will only behave as expected if
           `preload_content=False` because we want to make
           `preload_content=False` the default behaviour someday soon without
           breaking backwards compatibility.
    
        :param method:
            HTTP request method (such as GET, POST, PUT, etc.)
    
        :param url:
            The URL to perform the request on.
    
        :param body:
            Data to send in the request body, either :class:`str`, :class:`bytes`,
            an iterable of :class:`str`/:class:`bytes`, or a file-like object.
    
        :param headers:
            Dictionary of custom headers to send, such as User-Agent,
            If-None-Match, etc. If None, pool headers are used. If provided,
            these headers completely replace any pool-specific headers.
    
        :param retries:
            Configure the number of retries to allow before raising a
            :class:`~urllib3.exceptions.MaxRetryError` exception.
    
            Pass ``None`` to retry until you receive a response. Pass a
            :class:`~urllib3.util.retry.Retry` object for fine-grained control
            over different types of retries.
            Pass an integer number to retry connection errors that many times,
            but no other types of errors. Pass zero to never retry.
    
            If ``False``, then retries are disabled and any exception is raised
            immediately. Also, instead of raising a MaxRetryError on redirects,
            the redirect response will be returned.
    
        :type retries: :class:`~urllib3.util.retry.Retry`, False, or an int.
    
        :param redirect:
            If True, automatically handle redirects (status codes 301, 302,
            303, 307, 308). Each redirect counts as a retry. Disabling retries
            will disable redirect, too.
    
        :param assert_same_host:
            If ``True``, will make sure that the host of the pool requests is
            consistent else will raise HostChangedError. When ``False``, you can
            use the pool on an HTTP proxy and request foreign hosts.
    
        :param timeout:
            If specified, overrides the default timeout for this one
            request. It may be a float (in seconds) or an instance of
            :class:`urllib3.util.Timeout`.
    
        :param pool_timeout:
            If set and the pool is set to block=True, then this method will
            block for ``pool_timeout`` seconds and raise EmptyPoolError if no
            connection is available within the time period.
    
        :param release_conn:
            If False, then the urlopen call will not release the connection
            back into the pool once a response is received (but will release if
            you read the entire contents of the response such as when
            `preload_content=True`). This is useful if you're not preloading
            the response's content immediately. You will need to call
            ``r.release_conn()`` on the response ``r`` to return the connection
            back into the pool. If None, it takes the value of
            ``response_kw.get('preload_content', True)``.
    
        :param chunked:
            If True, urllib3 will send the body using chunked transfer
            encoding. Otherwise, urllib3 will send the body using the standard
            content-length form. Defaults to False.
    
        :param int body_pos:
            Position to seek to in file-like body in the event of a retry or
            redirect. Typically this won't need to be set because urllib3 will
            auto-populate the value when needed.
    
        :param \\**response_kw:
            Additional parameters are passed to
            :meth:`urllib3.response.HTTPResponse.from_httplib`
        """
    
        parsed_url = parse_url(url)
        destination_scheme = parsed_url.scheme
    
        if headers is None:
            headers = self.headers
    
        if not isinstance(retries, Retry):
            retries = Retry.from_int(retries, redirect=redirect, default=self.retries)
    
        if release_conn is None:
            release_conn = response_kw.get("preload_content", True)
    
        # Check host
        if assert_same_host and not self.is_same_host(url):
            raise HostChangedError(self, url, retries)
    
        # Ensure that the URL we're connecting to is properly encoded
        if url.startswith("/"):
            url = six.ensure_str(_encode_target(url))
        else:
            url = six.ensure_str(parsed_url.url)
    
        conn = None
    
        # Track whether `conn` needs to be released before
        # returning/raising/recursing. Update this variable if necessary, and
        # leave `release_conn` constant throughout the function. That way, if
        # the function recurses, the original value of `release_conn` will be
        # passed down into the recursive call, and its value will be respected.
        #
        # See issue #651 [1] for details.
        #
        # [1] <https://github.com/urllib3/urllib3/issues/651>
        release_this_conn = release_conn
    
        http_tunnel_required = connection_requires_http_tunnel(
            self.proxy, self.proxy_config, destination_scheme
        )
    
        # Merge the proxy headers. Only done when not using HTTP CONNECT. We
        # have to copy the headers dict so we can safely change it without those
        # changes being reflected in anyone else's copy.
        if not http_tunnel_required:
            headers = headers.copy()
            headers.update(self.proxy_headers)
    
        # Must keep the exception bound to a separate variable or else Python 3
        # complains about UnboundLocalError.
        err = None
    
        # Keep track of whether we cleanly exited the except block. This
        # ensures we do proper cleanup in finally.
        clean_exit = False
    
        # Rewind body position, if needed. Record current position
        # for future rewinds in the event of a redirect/retry.
        body_pos = set_file_position(body, body_pos)
    
        try:
            # Request a connection from the queue.
            timeout_obj = self._get_timeout(timeout)
            conn = self._get_conn(timeout=pool_timeout)
    
            conn.timeout = timeout_obj.connect_timeout
    
            is_new_proxy_conn = self.proxy is not None and not getattr(
                conn, "sock", None
            )
            if is_new_proxy_conn and http_tunnel_required:
                self._prepare_proxy(conn)
    
            # Make the request on the httplib connection object.
>           httplib_response = self._make_request(
                conn,
                method,
                url,
                timeout=timeout_obj,
                body=body,
                headers=headers,
                chunked=chunked,
            )

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py:699: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754a628e50>
conn = <urllib3.connection.HTTPSConnection object at 0x7f754ad68610>
method = 'POST'
url = '/api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf'
timeout = Timeout(connect=None, read=None, total=None), chunked = False
httplib_request_kw = {'body': b'{"size": 10, "from": 0, "query": {"query_string": {"query": "(anatomy.organ.name.aggregate:((heart)))"}}}',...p, deflate', 'Accept': '*/*', 'Connection': 'keep-alive', 'Content-Length': '105', 'Content-Type': 'application/json'}}
timeout_obj = Timeout(connect=None, read=None, total=None)

    def _make_request(
        self, conn, method, url, timeout=_Default, chunked=False, **httplib_request_kw
    ):
        """
        Perform a request on a given urllib connection object taken from our
        pool.
    
        :param conn:
            a connection from one of our connection pools
    
        :param timeout:
            Socket timeout in seconds for the request. This can be a
            float or integer, which will set the same timeout value for
            the socket connect and the socket read, or an instance of
            :class:`urllib3.util.Timeout`, which gives you more fine-grained
            control over your timeouts.
        """
        self.num_requests += 1
    
        timeout_obj = self._get_timeout(timeout)
        timeout_obj.start_connect()
        conn.timeout = timeout_obj.connect_timeout
    
        # Trigger any extra validation we need to do.
        try:
>           self._validate_conn(conn)

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py:382: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754a628e50>
conn = <urllib3.connection.HTTPSConnection object at 0x7f754ad68610>

    def _validate_conn(self, conn):
        """
        Called right before a request is made, after the socket is created.
        """
        super(HTTPSConnectionPool, self)._validate_conn(conn)
    
        # Force connect early to allow us to validate the connection.
        if not getattr(conn, "sock", None):  # AppEngine might not have  `.sock`
>           conn.connect()

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py:1010: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connection.HTTPSConnection object at 0x7f754ad68610>

    def connect(self):
        # Add certificate verification
>       conn = self._new_conn()

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connection.py:353: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connection.HTTPSConnection object at 0x7f754ad68610>

    def _new_conn(self):
        """Establish a socket connection and set nodelay settings on it.
    
        :return: New socket connection.
        """
        extra_kw = {}
        if self.source_address:
            extra_kw["source_address"] = self.source_address
    
        if self.socket_options:
            extra_kw["socket_options"] = self.socket_options
    
        try:
            conn = connection.create_connection(
                (self._dns_host, self.port), self.timeout, **extra_kw
            )
    
        except SocketTimeout:
            raise ConnectTimeoutError(
                self,
                "Connection to %s timed out. (connect timeout=%s)"
                % (self.host, self.timeout),
            )
    
        except SocketError as e:
>           raise NewConnectionError(
                self, "Failed to establish a new connection: %s" % e
            )
E           urllib3.exceptions.NewConnectionError: <urllib3.connection.HTTPSConnection object at 0x7f754ad68610>: Failed to establish a new connection: [Errno 110] Connection timed out

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connection.py:181: NewConnectionError

During handling of the above exception, another exception occurred:

self = <requests.adapters.HTTPAdapter object at 0x7f754a628c10>
request = <PreparedRequest [POST]>, stream = False
timeout = Timeout(connect=None, read=None, total=None), verify = True
cert = None, proxies = OrderedDict()

    def send(self, request, stream=False, timeout=None, verify=True, cert=None, proxies=None):
        """Sends PreparedRequest object. Returns Response object.
    
        :param request: The :class:`PreparedRequest <PreparedRequest>` being sent.
        :param stream: (optional) Whether to stream the request content.
        :param timeout: (optional) How long to wait for the server to send
            data before giving up, as a float, or a :ref:`(connect timeout,
            read timeout) <timeouts>` tuple.
        :type timeout: float or tuple or urllib3 Timeout object
        :param verify: (optional) Either a boolean, in which case it controls whether
            we verify the server's TLS certificate, or a string, in which case it
            must be a path to a CA bundle to use
        :param cert: (optional) Any user-provided SSL certificate to be trusted.
        :param proxies: (optional) The proxies dictionary to apply to the request.
        :rtype: requests.Response
        """
    
        try:
            conn = self.get_connection(request.url, proxies)
        except LocationValueError as e:
            raise InvalidURL(e, request=request)
    
        self.cert_verify(conn, request.url, verify, cert)
        url = self.request_url(request, proxies)
        self.add_headers(request, stream=stream, timeout=timeout, verify=verify, cert=cert, proxies=proxies)
    
        chunked = not (request.body is None or 'Content-Length' in request.headers)
    
        if isinstance(timeout, tuple):
            try:
                connect, read = timeout
                timeout = TimeoutSauce(connect=connect, read=read)
            except ValueError as e:
                # this may raise a string formatting error.
                err = ("Invalid timeout {}. Pass a (connect, read) "
                       "timeout tuple, or a single float to set "
                       "both timeouts to the same value".format(timeout))
                raise ValueError(err)
        elif isinstance(timeout, TimeoutSauce):
            pass
        else:
            timeout = TimeoutSauce(connect=timeout, read=timeout)
    
        try:
            if not chunked:
>               resp = conn.urlopen(
                    method=request.method,
                    url=url,
                    body=request.body,
                    headers=request.headers,
                    redirect=False,
                    assert_same_host=False,
                    preload_content=False,
                    decode_content=False,
                    retries=self.max_retries,
                    timeout=timeout
                )

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/adapters.py:439: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754a628e50>
method = 'POST'
url = '/api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf'
body = b'{"size": 10, "from": 0, "query": {"query_string": {"query": "(anatomy.organ.name.aggregate:((heart)))"}}}'
headers = {'User-Agent': 'python-requests/2.25.1', 'Accept-Encoding': 'gzip, deflate', 'Accept': '*/*', 'Connection': 'keep-alive', 'Content-Length': '105', 'Content-Type': 'application/json'}
retries = Retry(total=0, connect=None, read=False, redirect=None, status=None)
redirect = False, assert_same_host = False
timeout = Timeout(connect=None, read=None, total=None), pool_timeout = None
release_conn = False, chunked = False, body_pos = None
response_kw = {'decode_content': False, 'preload_content': False}
parsed_url = Url(scheme=None, auth=None, host=None, port=None, path='/api/1/elastic/SPARC_PortalDatasets_dev/_search', query='api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf', fragment=None)
destination_scheme = None, conn = None, release_this_conn = True
http_tunnel_required = False, err = None, clean_exit = False

    def urlopen(
        self,
        method,
        url,
        body=None,
        headers=None,
        retries=None,
        redirect=True,
        assert_same_host=True,
        timeout=_Default,
        pool_timeout=None,
        release_conn=None,
        chunked=False,
        body_pos=None,
        **response_kw
    ):
        """
        Get a connection from the pool and perform an HTTP request. This is the
        lowest level call for making a request, so you'll need to specify all
        the raw details.
    
        .. note::
    
           More commonly, it's appropriate to use a convenience method provided
           by :class:`.RequestMethods`, such as :meth:`request`.
    
        .. note::
    
           `release_conn` will only behave as expected if
           `preload_content=False` because we want to make
           `preload_content=False` the default behaviour someday soon without
           breaking backwards compatibility.
    
        :param method:
            HTTP request method (such as GET, POST, PUT, etc.)
    
        :param url:
            The URL to perform the request on.
    
        :param body:
            Data to send in the request body, either :class:`str`, :class:`bytes`,
            an iterable of :class:`str`/:class:`bytes`, or a file-like object.
    
        :param headers:
            Dictionary of custom headers to send, such as User-Agent,
            If-None-Match, etc. If None, pool headers are used. If provided,
            these headers completely replace any pool-specific headers.
    
        :param retries:
            Configure the number of retries to allow before raising a
            :class:`~urllib3.exceptions.MaxRetryError` exception.
    
            Pass ``None`` to retry until you receive a response. Pass a
            :class:`~urllib3.util.retry.Retry` object for fine-grained control
            over different types of retries.
            Pass an integer number to retry connection errors that many times,
            but no other types of errors. Pass zero to never retry.
    
            If ``False``, then retries are disabled and any exception is raised
            immediately. Also, instead of raising a MaxRetryError on redirects,
            the redirect response will be returned.
    
        :type retries: :class:`~urllib3.util.retry.Retry`, False, or an int.
    
        :param redirect:
            If True, automatically handle redirects (status codes 301, 302,
            303, 307, 308). Each redirect counts as a retry. Disabling retries
            will disable redirect, too.
    
        :param assert_same_host:
            If ``True``, will make sure that the host of the pool requests is
            consistent else will raise HostChangedError. When ``False``, you can
            use the pool on an HTTP proxy and request foreign hosts.
    
        :param timeout:
            If specified, overrides the default timeout for this one
            request. It may be a float (in seconds) or an instance of
            :class:`urllib3.util.Timeout`.
    
        :param pool_timeout:
            If set and the pool is set to block=True, then this method will
            block for ``pool_timeout`` seconds and raise EmptyPoolError if no
            connection is available within the time period.
    
        :param release_conn:
            If False, then the urlopen call will not release the connection
            back into the pool once a response is received (but will release if
            you read the entire contents of the response such as when
            `preload_content=True`). This is useful if you're not preloading
            the response's content immediately. You will need to call
            ``r.release_conn()`` on the response ``r`` to return the connection
            back into the pool. If None, it takes the value of
            ``response_kw.get('preload_content', True)``.
    
        :param chunked:
            If True, urllib3 will send the body using chunked transfer
            encoding. Otherwise, urllib3 will send the body using the standard
            content-length form. Defaults to False.
    
        :param int body_pos:
            Position to seek to in file-like body in the event of a retry or
            redirect. Typically this won't need to be set because urllib3 will
            auto-populate the value when needed.
    
        :param \\**response_kw:
            Additional parameters are passed to
            :meth:`urllib3.response.HTTPResponse.from_httplib`
        """
    
        parsed_url = parse_url(url)
        destination_scheme = parsed_url.scheme
    
        if headers is None:
            headers = self.headers
    
        if not isinstance(retries, Retry):
            retries = Retry.from_int(retries, redirect=redirect, default=self.retries)
    
        if release_conn is None:
            release_conn = response_kw.get("preload_content", True)
    
        # Check host
        if assert_same_host and not self.is_same_host(url):
            raise HostChangedError(self, url, retries)
    
        # Ensure that the URL we're connecting to is properly encoded
        if url.startswith("/"):
            url = six.ensure_str(_encode_target(url))
        else:
            url = six.ensure_str(parsed_url.url)
    
        conn = None
    
        # Track whether `conn` needs to be released before
        # returning/raising/recursing. Update this variable if necessary, and
        # leave `release_conn` constant throughout the function. That way, if
        # the function recurses, the original value of `release_conn` will be
        # passed down into the recursive call, and its value will be respected.
        #
        # See issue #651 [1] for details.
        #
        # [1] <https://github.com/urllib3/urllib3/issues/651>
        release_this_conn = release_conn
    
        http_tunnel_required = connection_requires_http_tunnel(
            self.proxy, self.proxy_config, destination_scheme
        )
    
        # Merge the proxy headers. Only done when not using HTTP CONNECT. We
        # have to copy the headers dict so we can safely change it without those
        # changes being reflected in anyone else's copy.
        if not http_tunnel_required:
            headers = headers.copy()
            headers.update(self.proxy_headers)
    
        # Must keep the exception bound to a separate variable or else Python 3
        # complains about UnboundLocalError.
        err = None
    
        # Keep track of whether we cleanly exited the except block. This
        # ensures we do proper cleanup in finally.
        clean_exit = False
    
        # Rewind body position, if needed. Record current position
        # for future rewinds in the event of a redirect/retry.
        body_pos = set_file_position(body, body_pos)
    
        try:
            # Request a connection from the queue.
            timeout_obj = self._get_timeout(timeout)
            conn = self._get_conn(timeout=pool_timeout)
    
            conn.timeout = timeout_obj.connect_timeout
    
            is_new_proxy_conn = self.proxy is not None and not getattr(
                conn, "sock", None
            )
            if is_new_proxy_conn and http_tunnel_required:
                self._prepare_proxy(conn)
    
            # Make the request on the httplib connection object.
            httplib_response = self._make_request(
                conn,
                method,
                url,
                timeout=timeout_obj,
                body=body,
                headers=headers,
                chunked=chunked,
            )
    
            # If we're going to release the connection in ``finally:``, then
            # the response doesn't need to know about the connection. Otherwise
            # it will also try to release it and we'll have a double-release
            # mess.
            response_conn = conn if not release_conn else None
    
            # Pass method to Response for length checking
            response_kw["request_method"] = method
    
            # Import httplib's response into our own wrapper object
            response = self.ResponseCls.from_httplib(
                httplib_response,
                pool=self,
                connection=response_conn,
                retries=retries,
                **response_kw
            )
    
            # Everything went great!
            clean_exit = True
    
        except EmptyPoolError:
            # Didn't get a connection from the pool, no need to clean up
            clean_exit = True
            release_this_conn = False
            raise
    
        except (
            TimeoutError,
            HTTPException,
            SocketError,
            ProtocolError,
            BaseSSLError,
            SSLError,
            CertificateError,
        ) as e:
            # Discard the connection for these exceptions. It will be
            # replaced during the next _get_conn() call.
            clean_exit = False
            if isinstance(e, (BaseSSLError, CertificateError)):
                e = SSLError(e)
            elif isinstance(e, (SocketError, NewConnectionError)) and self.proxy:
                e = ProxyError("Cannot connect to proxy.", e)
            elif isinstance(e, (SocketError, HTTPException)):
                e = ProtocolError("Connection aborted.", e)
    
>           retries = retries.increment(
                method, url, error=e, _pool=self, _stacktrace=sys.exc_info()[2]
            )

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py:755: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = Retry(total=0, connect=None, read=False, redirect=None, status=None)
method = 'POST'
url = '/api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf'
response = None
error = NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7f754ad68610>: Failed to establish a new connection: [Errno 110] Connection timed out')
_pool = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754a628e50>
_stacktrace = <traceback object at 0x7f754a481680>

    def increment(
        self,
        method=None,
        url=None,
        response=None,
        error=None,
        _pool=None,
        _stacktrace=None,
    ):
        """Return a new Retry object with incremented retry counters.
    
        :param response: A response object, or None, if the server did not
            return a response.
        :type response: :class:`~urllib3.response.HTTPResponse`
        :param Exception error: An error encountered during the request, or
            None if the response was received successfully.
    
        :return: A new ``Retry`` object.
        """
        if self.total is False and error:
            # Disabled, indicate to re-raise the error.
            raise six.reraise(type(error), error, _stacktrace)
    
        total = self.total
        if total is not None:
            total -= 1
    
        connect = self.connect
        read = self.read
        redirect = self.redirect
        status_count = self.status
        other = self.other
        cause = "unknown"
        status = None
        redirect_location = None
    
        if error and self._is_connection_error(error):
            # Connect retry?
            if connect is False:
                raise six.reraise(type(error), error, _stacktrace)
            elif connect is not None:
                connect -= 1
    
        elif error and self._is_read_error(error):
            # Read retry?
            if read is False or not self._is_method_retryable(method):
                raise six.reraise(type(error), error, _stacktrace)
            elif read is not None:
                read -= 1
    
        elif error:
            # Other retry?
            if other is not None:
                other -= 1
    
        elif response and response.get_redirect_location():
            # Redirect retry?
            if redirect is not None:
                redirect -= 1
            cause = "too many redirects"
            redirect_location = response.get_redirect_location()
            status = response.status
    
        else:
            # Incrementing because of a server error like a 500 in
            # status_forcelist and the given method is in the allowed_methods
            cause = ResponseError.GENERIC_ERROR
            if response and response.status:
                if status_count is not None:
                    status_count -= 1
                cause = ResponseError.SPECIFIC_ERROR.format(status_code=response.status)
                status = response.status
    
        history = self.history + (
            RequestHistory(method, url, error, status, redirect_location),
        )
    
        new_retry = self.new(
            total=total,
            connect=connect,
            read=read,
            redirect=redirect,
            status=status_count,
            other=other,
            history=history,
        )
    
        if new_retry.is_exhausted():
>           raise MaxRetryError(_pool, url, error or ResponseError(cause))
E           urllib3.exceptions.MaxRetryError: HTTPSConnectionPool(host='scicrunch.org', port=443): Max retries exceeded with url: /api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7f754ad68610>: Failed to establish a new connection: [Errno 110] Connection timed out'))

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/util/retry.py:574: MaxRetryError

During handling of the above exception, another exception occurred:

client = <FlaskClient <Flask 'app.main'>>

    def test_scicrunch_filter(client):
>       r = client.get('/filter-search/', query_string={'term': 'organ', 'facet': 'heart'})

tests/test_scicrunch.py:124: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/werkzeug/test.py:1029: in get
    return self.open(*args, **kw)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/testing.py:222: in open
    return Client.open(
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/werkzeug/test.py:993: in open
    response = self.run_wsgi_app(environ.copy(), buffered=buffered)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/werkzeug/test.py:884: in run_wsgi_app
    rv = run_wsgi_app(self.application, environ, buffered=buffered)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/werkzeug/test.py:1119: in run_wsgi_app
    app_rv = app(environ, start_response)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:2463: in __call__
    return self.wsgi_app(environ, start_response)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:2449: in wsgi_app
    response = self.handle_exception(e)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask_cors/extension.py:161: in wrapped_function
    return cors_after_request(app.make_response(f(*args, **kwargs)))
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1866: in handle_exception
    reraise(exc_type, exc_value, tb)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/_compat.py:39: in reraise
    raise value
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:2446: in wsgi_app
    response = self.full_dispatch_request()
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1951: in full_dispatch_request
    rv = self.handle_user_exception(e)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask_cors/extension.py:161: in wrapped_function
    return cors_after_request(app.make_response(f(*args, **kwargs)))
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1820: in handle_user_exception
    reraise(exc_type, exc_value, tb)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/_compat.py:39: in reraise
    raise value
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1949: in full_dispatch_request
    rv = self.dispatch_request()
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1935: in dispatch_request
    return self.view_functions[rule.endpoint](**req.view_args)
app/main.py:707: in filter_search
    response = requests.post(
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/api.py:119: in post
    return request('post', url, data=data, json=json, **kwargs)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/api.py:61: in request
    return session.request(method=method, url=url, **kwargs)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/sessions.py:542: in request
    resp = self.send(prep, **send_kwargs)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/sessions.py:655: in send
    r = adapter.send(request, **kwargs)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <requests.adapters.HTTPAdapter object at 0x7f754a628c10>
request = <PreparedRequest [POST]>, stream = False
timeout = Timeout(connect=None, read=None, total=None), verify = True
cert = None, proxies = OrderedDict()

    def send(self, request, stream=False, timeout=None, verify=True, cert=None, proxies=None):
        """Sends PreparedRequest object. Returns Response object.
    
        :param request: The :class:`PreparedRequest <PreparedRequest>` being sent.
        :param stream: (optional) Whether to stream the request content.
        :param timeout: (optional) How long to wait for the server to send
            data before giving up, as a float, or a :ref:`(connect timeout,
            read timeout) <timeouts>` tuple.
        :type timeout: float or tuple or urllib3 Timeout object
        :param verify: (optional) Either a boolean, in which case it controls whether
            we verify the server's TLS certificate, or a string, in which case it
            must be a path to a CA bundle to use
        :param cert: (optional) Any user-provided SSL certificate to be trusted.
        :param proxies: (optional) The proxies dictionary to apply to the request.
        :rtype: requests.Response
        """
    
        try:
            conn = self.get_connection(request.url, proxies)
        except LocationValueError as e:
            raise InvalidURL(e, request=request)
    
        self.cert_verify(conn, request.url, verify, cert)
        url = self.request_url(request, proxies)
        self.add_headers(request, stream=stream, timeout=timeout, verify=verify, cert=cert, proxies=proxies)
    
        chunked = not (request.body is None or 'Content-Length' in request.headers)
    
        if isinstance(timeout, tuple):
            try:
                connect, read = timeout
                timeout = TimeoutSauce(connect=connect, read=read)
            except ValueError as e:
                # this may raise a string formatting error.
                err = ("Invalid timeout {}. Pass a (connect, read) "
                       "timeout tuple, or a single float to set "
                       "both timeouts to the same value".format(timeout))
                raise ValueError(err)
        elif isinstance(timeout, TimeoutSauce):
            pass
        else:
            timeout = TimeoutSauce(connect=timeout, read=timeout)
    
        try:
            if not chunked:
                resp = conn.urlopen(
                    method=request.method,
                    url=url,
                    body=request.body,
                    headers=request.headers,
                    redirect=False,
                    assert_same_host=False,
                    preload_content=False,
                    decode_content=False,
                    retries=self.max_retries,
                    timeout=timeout
                )
    
            # Send the request.
            else:
                if hasattr(conn, 'proxy_pool'):
                    conn = conn.proxy_pool
    
                low_conn = conn._get_conn(timeout=DEFAULT_POOL_TIMEOUT)
    
                try:
                    low_conn.putrequest(request.method,
                                        url,
                                        skip_accept_encoding=True)
    
                    for header, value in request.headers.items():
                        low_conn.putheader(header, value)
    
                    low_conn.endheaders()
    
                    for i in request.body:
                        low_conn.send(hex(len(i))[2:].encode('utf-8'))
                        low_conn.send(b'\r\n')
                        low_conn.send(i)
                        low_conn.send(b'\r\n')
                    low_conn.send(b'0\r\n\r\n')
    
                    # Receive the response from the server
                    try:
                        # For Python 2.7, use buffering of HTTP responses
                        r = low_conn.getresponse(buffering=True)
                    except TypeError:
                        # For compatibility with Python 3.3+
                        r = low_conn.getresponse()
    
                    resp = HTTPResponse.from_httplib(
                        r,
                        pool=conn,
                        connection=low_conn,
                        preload_content=False,
                        decode_content=False
                    )
                except:
                    # If we hit any problems here, clean up the connection.
                    # Then, reraise so that we can handle the actual exception.
                    low_conn.close()
                    raise
    
        except (ProtocolError, socket.error) as err:
            raise ConnectionError(err, request=request)
    
        except MaxRetryError as e:
            if isinstance(e.reason, ConnectTimeoutError):
                # TODO: Remove this in 3.0.0: see #2811
                if not isinstance(e.reason, NewConnectionError):
                    raise ConnectTimeout(e, request=request)
    
            if isinstance(e.reason, ResponseError):
                raise RetryError(e, request=request)
    
            if isinstance(e.reason, _ProxyError):
                raise ProxyError(e, request=request)
    
            if isinstance(e.reason, _SSLError):
                # This branch is for urllib3 v1.22 and later.
                raise SSLError(e, request=request)
    
>           raise ConnectionError(e, request=request)
E           requests.exceptions.ConnectionError: HTTPSConnectionPool(host='scicrunch.org', port=443): Max retries exceeded with url: /api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7f754ad68610>: Failed to establish a new connection: [Errno 110] Connection timed out'))

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/adapters.py:516: ConnectionError
_______________________ test_scicrunch_filter_scaffolds ________________________

self = <urllib3.connection.HTTPSConnection object at 0x7f754a4bae50>

    def _new_conn(self):
        """Establish a socket connection and set nodelay settings on it.
    
        :return: New socket connection.
        """
        extra_kw = {}
        if self.source_address:
            extra_kw["source_address"] = self.source_address
    
        if self.socket_options:
            extra_kw["socket_options"] = self.socket_options
    
        try:
>           conn = connection.create_connection(
                (self._dns_host, self.port), self.timeout, **extra_kw
            )

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connection.py:169: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

address = ('scicrunch.org', 443), timeout = None, source_address = None
socket_options = [(6, 1, 1)]

    def create_connection(
        address,
        timeout=socket._GLOBAL_DEFAULT_TIMEOUT,
        source_address=None,
        socket_options=None,
    ):
        """Connect to *address* and return the socket object.
    
        Convenience function.  Connect to *address* (a 2-tuple ``(host,
        port)``) and return the socket object.  Passing the optional
        *timeout* parameter will set the timeout on the socket instance
        before attempting to connect.  If no *timeout* is supplied, the
        global default timeout setting returned by :func:`socket.getdefaulttimeout`
        is used.  If *source_address* is set it must be a tuple of (host, port)
        for the socket to bind as a source address before making the connection.
        An host of '' or port 0 tells the OS to use the default.
        """
    
        host, port = address
        if host.startswith("["):
            host = host.strip("[]")
        err = None
    
        # Using the value from allowed_gai_family() in the context of getaddrinfo lets
        # us select whether to work with IPv4 DNS records, IPv6 records, or both.
        # The original create_connection function always returns all records.
        family = allowed_gai_family()
    
        try:
            host.encode("idna")
        except UnicodeError:
            return six.raise_from(
                LocationParseError(u"'%s', label empty or too long" % host), None
            )
    
        for res in socket.getaddrinfo(host, port, family, socket.SOCK_STREAM):
            af, socktype, proto, canonname, sa = res
            sock = None
            try:
                sock = socket.socket(af, socktype, proto)
    
                # If provided, set socket level options before connecting.
                _set_socket_options(sock, socket_options)
    
                if timeout is not socket._GLOBAL_DEFAULT_TIMEOUT:
                    sock.settimeout(timeout)
                if source_address:
                    sock.bind(source_address)
                sock.connect(sa)
                return sock
    
            except socket.error as e:
                err = e
                if sock is not None:
                    sock.close()
                    sock = None
    
        if err is not None:
>           raise err

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/util/connection.py:96: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

address = ('scicrunch.org', 443), timeout = None, source_address = None
socket_options = [(6, 1, 1)]

    def create_connection(
        address,
        timeout=socket._GLOBAL_DEFAULT_TIMEOUT,
        source_address=None,
        socket_options=None,
    ):
        """Connect to *address* and return the socket object.
    
        Convenience function.  Connect to *address* (a 2-tuple ``(host,
        port)``) and return the socket object.  Passing the optional
        *timeout* parameter will set the timeout on the socket instance
        before attempting to connect.  If no *timeout* is supplied, the
        global default timeout setting returned by :func:`socket.getdefaulttimeout`
        is used.  If *source_address* is set it must be a tuple of (host, port)
        for the socket to bind as a source address before making the connection.
        An host of '' or port 0 tells the OS to use the default.
        """
    
        host, port = address
        if host.startswith("["):
            host = host.strip("[]")
        err = None
    
        # Using the value from allowed_gai_family() in the context of getaddrinfo lets
        # us select whether to work with IPv4 DNS records, IPv6 records, or both.
        # The original create_connection function always returns all records.
        family = allowed_gai_family()
    
        try:
            host.encode("idna")
        except UnicodeError:
            return six.raise_from(
                LocationParseError(u"'%s', label empty or too long" % host), None
            )
    
        for res in socket.getaddrinfo(host, port, family, socket.SOCK_STREAM):
            af, socktype, proto, canonname, sa = res
            sock = None
            try:
                sock = socket.socket(af, socktype, proto)
    
                # If provided, set socket level options before connecting.
                _set_socket_options(sock, socket_options)
    
                if timeout is not socket._GLOBAL_DEFAULT_TIMEOUT:
                    sock.settimeout(timeout)
                if source_address:
                    sock.bind(source_address)
>               sock.connect(sa)
E               TimeoutError: [Errno 110] Connection timed out

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/util/connection.py:86: TimeoutError

During handling of the above exception, another exception occurred:

self = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754a4e70d0>
method = 'POST'
url = '/api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf'
body = b'{"size": 10, "from": 0, "query": {"query_string": {"query": "objects.additional_mimetype.name:(application%2fx.vnd.abi.scaffold.meta%2Bjson)"}}}'
headers = {'User-Agent': 'python-requests/2.25.1', 'Accept-Encoding': 'gzip, deflate', 'Accept': '*/*', 'Connection': 'keep-alive', 'Content-Length': '144', 'Content-Type': 'application/json'}
retries = Retry(total=0, connect=None, read=False, redirect=None, status=None)
redirect = False, assert_same_host = False
timeout = Timeout(connect=None, read=None, total=None), pool_timeout = None
release_conn = False, chunked = False, body_pos = None
response_kw = {'decode_content': False, 'preload_content': False}
parsed_url = Url(scheme=None, auth=None, host=None, port=None, path='/api/1/elastic/SPARC_PortalDatasets_dev/_search', query='api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf', fragment=None)
destination_scheme = None, conn = None, release_this_conn = True
http_tunnel_required = False, err = None, clean_exit = False

    def urlopen(
        self,
        method,
        url,
        body=None,
        headers=None,
        retries=None,
        redirect=True,
        assert_same_host=True,
        timeout=_Default,
        pool_timeout=None,
        release_conn=None,
        chunked=False,
        body_pos=None,
        **response_kw
    ):
        """
        Get a connection from the pool and perform an HTTP request. This is the
        lowest level call for making a request, so you'll need to specify all
        the raw details.
    
        .. note::
    
           More commonly, it's appropriate to use a convenience method provided
           by :class:`.RequestMethods`, such as :meth:`request`.
    
        .. note::
    
           `release_conn` will only behave as expected if
           `preload_content=False` because we want to make
           `preload_content=False` the default behaviour someday soon without
           breaking backwards compatibility.
    
        :param method:
            HTTP request method (such as GET, POST, PUT, etc.)
    
        :param url:
            The URL to perform the request on.
    
        :param body:
            Data to send in the request body, either :class:`str`, :class:`bytes`,
            an iterable of :class:`str`/:class:`bytes`, or a file-like object.
    
        :param headers:
            Dictionary of custom headers to send, such as User-Agent,
            If-None-Match, etc. If None, pool headers are used. If provided,
            these headers completely replace any pool-specific headers.
    
        :param retries:
            Configure the number of retries to allow before raising a
            :class:`~urllib3.exceptions.MaxRetryError` exception.
    
            Pass ``None`` to retry until you receive a response. Pass a
            :class:`~urllib3.util.retry.Retry` object for fine-grained control
            over different types of retries.
            Pass an integer number to retry connection errors that many times,
            but no other types of errors. Pass zero to never retry.
    
            If ``False``, then retries are disabled and any exception is raised
            immediately. Also, instead of raising a MaxRetryError on redirects,
            the redirect response will be returned.
    
        :type retries: :class:`~urllib3.util.retry.Retry`, False, or an int.
    
        :param redirect:
            If True, automatically handle redirects (status codes 301, 302,
            303, 307, 308). Each redirect counts as a retry. Disabling retries
            will disable redirect, too.
    
        :param assert_same_host:
            If ``True``, will make sure that the host of the pool requests is
            consistent else will raise HostChangedError. When ``False``, you can
            use the pool on an HTTP proxy and request foreign hosts.
    
        :param timeout:
            If specified, overrides the default timeout for this one
            request. It may be a float (in seconds) or an instance of
            :class:`urllib3.util.Timeout`.
    
        :param pool_timeout:
            If set and the pool is set to block=True, then this method will
            block for ``pool_timeout`` seconds and raise EmptyPoolError if no
            connection is available within the time period.
    
        :param release_conn:
            If False, then the urlopen call will not release the connection
            back into the pool once a response is received (but will release if
            you read the entire contents of the response such as when
            `preload_content=True`). This is useful if you're not preloading
            the response's content immediately. You will need to call
            ``r.release_conn()`` on the response ``r`` to return the connection
            back into the pool. If None, it takes the value of
            ``response_kw.get('preload_content', True)``.
    
        :param chunked:
            If True, urllib3 will send the body using chunked transfer
            encoding. Otherwise, urllib3 will send the body using the standard
            content-length form. Defaults to False.
    
        :param int body_pos:
            Position to seek to in file-like body in the event of a retry or
            redirect. Typically this won't need to be set because urllib3 will
            auto-populate the value when needed.
    
        :param \\**response_kw:
            Additional parameters are passed to
            :meth:`urllib3.response.HTTPResponse.from_httplib`
        """
    
        parsed_url = parse_url(url)
        destination_scheme = parsed_url.scheme
    
        if headers is None:
            headers = self.headers
    
        if not isinstance(retries, Retry):
            retries = Retry.from_int(retries, redirect=redirect, default=self.retries)
    
        if release_conn is None:
            release_conn = response_kw.get("preload_content", True)
    
        # Check host
        if assert_same_host and not self.is_same_host(url):
            raise HostChangedError(self, url, retries)
    
        # Ensure that the URL we're connecting to is properly encoded
        if url.startswith("/"):
            url = six.ensure_str(_encode_target(url))
        else:
            url = six.ensure_str(parsed_url.url)
    
        conn = None
    
        # Track whether `conn` needs to be released before
        # returning/raising/recursing. Update this variable if necessary, and
        # leave `release_conn` constant throughout the function. That way, if
        # the function recurses, the original value of `release_conn` will be
        # passed down into the recursive call, and its value will be respected.
        #
        # See issue #651 [1] for details.
        #
        # [1] <https://github.com/urllib3/urllib3/issues/651>
        release_this_conn = release_conn
    
        http_tunnel_required = connection_requires_http_tunnel(
            self.proxy, self.proxy_config, destination_scheme
        )
    
        # Merge the proxy headers. Only done when not using HTTP CONNECT. We
        # have to copy the headers dict so we can safely change it without those
        # changes being reflected in anyone else's copy.
        if not http_tunnel_required:
            headers = headers.copy()
            headers.update(self.proxy_headers)
    
        # Must keep the exception bound to a separate variable or else Python 3
        # complains about UnboundLocalError.
        err = None
    
        # Keep track of whether we cleanly exited the except block. This
        # ensures we do proper cleanup in finally.
        clean_exit = False
    
        # Rewind body position, if needed. Record current position
        # for future rewinds in the event of a redirect/retry.
        body_pos = set_file_position(body, body_pos)
    
        try:
            # Request a connection from the queue.
            timeout_obj = self._get_timeout(timeout)
            conn = self._get_conn(timeout=pool_timeout)
    
            conn.timeout = timeout_obj.connect_timeout
    
            is_new_proxy_conn = self.proxy is not None and not getattr(
                conn, "sock", None
            )
            if is_new_proxy_conn and http_tunnel_required:
                self._prepare_proxy(conn)
    
            # Make the request on the httplib connection object.
>           httplib_response = self._make_request(
                conn,
                method,
                url,
                timeout=timeout_obj,
                body=body,
                headers=headers,
                chunked=chunked,
            )

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py:699: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754a4e70d0>
conn = <urllib3.connection.HTTPSConnection object at 0x7f754a4bae50>
method = 'POST'
url = '/api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf'
timeout = Timeout(connect=None, read=None, total=None), chunked = False
httplib_request_kw = {'body': b'{"size": 10, "from": 0, "query": {"query_string": {"query": "objects.additional_mimetype.name:(application%...p, deflate', 'Accept': '*/*', 'Connection': 'keep-alive', 'Content-Length': '144', 'Content-Type': 'application/json'}}
timeout_obj = Timeout(connect=None, read=None, total=None)

    def _make_request(
        self, conn, method, url, timeout=_Default, chunked=False, **httplib_request_kw
    ):
        """
        Perform a request on a given urllib connection object taken from our
        pool.
    
        :param conn:
            a connection from one of our connection pools
    
        :param timeout:
            Socket timeout in seconds for the request. This can be a
            float or integer, which will set the same timeout value for
            the socket connect and the socket read, or an instance of
            :class:`urllib3.util.Timeout`, which gives you more fine-grained
            control over your timeouts.
        """
        self.num_requests += 1
    
        timeout_obj = self._get_timeout(timeout)
        timeout_obj.start_connect()
        conn.timeout = timeout_obj.connect_timeout
    
        # Trigger any extra validation we need to do.
        try:
>           self._validate_conn(conn)

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py:382: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754a4e70d0>
conn = <urllib3.connection.HTTPSConnection object at 0x7f754a4bae50>

    def _validate_conn(self, conn):
        """
        Called right before a request is made, after the socket is created.
        """
        super(HTTPSConnectionPool, self)._validate_conn(conn)
    
        # Force connect early to allow us to validate the connection.
        if not getattr(conn, "sock", None):  # AppEngine might not have  `.sock`
>           conn.connect()

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py:1010: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connection.HTTPSConnection object at 0x7f754a4bae50>

    def connect(self):
        # Add certificate verification
>       conn = self._new_conn()

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connection.py:353: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connection.HTTPSConnection object at 0x7f754a4bae50>

    def _new_conn(self):
        """Establish a socket connection and set nodelay settings on it.
    
        :return: New socket connection.
        """
        extra_kw = {}
        if self.source_address:
            extra_kw["source_address"] = self.source_address
    
        if self.socket_options:
            extra_kw["socket_options"] = self.socket_options
    
        try:
            conn = connection.create_connection(
                (self._dns_host, self.port), self.timeout, **extra_kw
            )
    
        except SocketTimeout:
            raise ConnectTimeoutError(
                self,
                "Connection to %s timed out. (connect timeout=%s)"
                % (self.host, self.timeout),
            )
    
        except SocketError as e:
>           raise NewConnectionError(
                self, "Failed to establish a new connection: %s" % e
            )
E           urllib3.exceptions.NewConnectionError: <urllib3.connection.HTTPSConnection object at 0x7f754a4bae50>: Failed to establish a new connection: [Errno 110] Connection timed out

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connection.py:181: NewConnectionError

During handling of the above exception, another exception occurred:

self = <requests.adapters.HTTPAdapter object at 0x7f754a4e7550>
request = <PreparedRequest [POST]>, stream = False
timeout = Timeout(connect=None, read=None, total=None), verify = True
cert = None, proxies = OrderedDict()

    def send(self, request, stream=False, timeout=None, verify=True, cert=None, proxies=None):
        """Sends PreparedRequest object. Returns Response object.
    
        :param request: The :class:`PreparedRequest <PreparedRequest>` being sent.
        :param stream: (optional) Whether to stream the request content.
        :param timeout: (optional) How long to wait for the server to send
            data before giving up, as a float, or a :ref:`(connect timeout,
            read timeout) <timeouts>` tuple.
        :type timeout: float or tuple or urllib3 Timeout object
        :param verify: (optional) Either a boolean, in which case it controls whether
            we verify the server's TLS certificate, or a string, in which case it
            must be a path to a CA bundle to use
        :param cert: (optional) Any user-provided SSL certificate to be trusted.
        :param proxies: (optional) The proxies dictionary to apply to the request.
        :rtype: requests.Response
        """
    
        try:
            conn = self.get_connection(request.url, proxies)
        except LocationValueError as e:
            raise InvalidURL(e, request=request)
    
        self.cert_verify(conn, request.url, verify, cert)
        url = self.request_url(request, proxies)
        self.add_headers(request, stream=stream, timeout=timeout, verify=verify, cert=cert, proxies=proxies)
    
        chunked = not (request.body is None or 'Content-Length' in request.headers)
    
        if isinstance(timeout, tuple):
            try:
                connect, read = timeout
                timeout = TimeoutSauce(connect=connect, read=read)
            except ValueError as e:
                # this may raise a string formatting error.
                err = ("Invalid timeout {}. Pass a (connect, read) "
                       "timeout tuple, or a single float to set "
                       "both timeouts to the same value".format(timeout))
                raise ValueError(err)
        elif isinstance(timeout, TimeoutSauce):
            pass
        else:
            timeout = TimeoutSauce(connect=timeout, read=timeout)
    
        try:
            if not chunked:
>               resp = conn.urlopen(
                    method=request.method,
                    url=url,
                    body=request.body,
                    headers=request.headers,
                    redirect=False,
                    assert_same_host=False,
                    preload_content=False,
                    decode_content=False,
                    retries=self.max_retries,
                    timeout=timeout
                )

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/adapters.py:439: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754a4e70d0>
method = 'POST'
url = '/api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf'
body = b'{"size": 10, "from": 0, "query": {"query_string": {"query": "objects.additional_mimetype.name:(application%2fx.vnd.abi.scaffold.meta%2Bjson)"}}}'
headers = {'User-Agent': 'python-requests/2.25.1', 'Accept-Encoding': 'gzip, deflate', 'Accept': '*/*', 'Connection': 'keep-alive', 'Content-Length': '144', 'Content-Type': 'application/json'}
retries = Retry(total=0, connect=None, read=False, redirect=None, status=None)
redirect = False, assert_same_host = False
timeout = Timeout(connect=None, read=None, total=None), pool_timeout = None
release_conn = False, chunked = False, body_pos = None
response_kw = {'decode_content': False, 'preload_content': False}
parsed_url = Url(scheme=None, auth=None, host=None, port=None, path='/api/1/elastic/SPARC_PortalDatasets_dev/_search', query='api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf', fragment=None)
destination_scheme = None, conn = None, release_this_conn = True
http_tunnel_required = False, err = None, clean_exit = False

    def urlopen(
        self,
        method,
        url,
        body=None,
        headers=None,
        retries=None,
        redirect=True,
        assert_same_host=True,
        timeout=_Default,
        pool_timeout=None,
        release_conn=None,
        chunked=False,
        body_pos=None,
        **response_kw
    ):
        """
        Get a connection from the pool and perform an HTTP request. This is the
        lowest level call for making a request, so you'll need to specify all
        the raw details.
    
        .. note::
    
           More commonly, it's appropriate to use a convenience method provided
           by :class:`.RequestMethods`, such as :meth:`request`.
    
        .. note::
    
           `release_conn` will only behave as expected if
           `preload_content=False` because we want to make
           `preload_content=False` the default behaviour someday soon without
           breaking backwards compatibility.
    
        :param method:
            HTTP request method (such as GET, POST, PUT, etc.)
    
        :param url:
            The URL to perform the request on.
    
        :param body:
            Data to send in the request body, either :class:`str`, :class:`bytes`,
            an iterable of :class:`str`/:class:`bytes`, or a file-like object.
    
        :param headers:
            Dictionary of custom headers to send, such as User-Agent,
            If-None-Match, etc. If None, pool headers are used. If provided,
            these headers completely replace any pool-specific headers.
    
        :param retries:
            Configure the number of retries to allow before raising a
            :class:`~urllib3.exceptions.MaxRetryError` exception.
    
            Pass ``None`` to retry until you receive a response. Pass a
            :class:`~urllib3.util.retry.Retry` object for fine-grained control
            over different types of retries.
            Pass an integer number to retry connection errors that many times,
            but no other types of errors. Pass zero to never retry.
    
            If ``False``, then retries are disabled and any exception is raised
            immediately. Also, instead of raising a MaxRetryError on redirects,
            the redirect response will be returned.
    
        :type retries: :class:`~urllib3.util.retry.Retry`, False, or an int.
    
        :param redirect:
            If True, automatically handle redirects (status codes 301, 302,
            303, 307, 308). Each redirect counts as a retry. Disabling retries
            will disable redirect, too.
    
        :param assert_same_host:
            If ``True``, will make sure that the host of the pool requests is
            consistent else will raise HostChangedError. When ``False``, you can
            use the pool on an HTTP proxy and request foreign hosts.
    
        :param timeout:
            If specified, overrides the default timeout for this one
            request. It may be a float (in seconds) or an instance of
            :class:`urllib3.util.Timeout`.
    
        :param pool_timeout:
            If set and the pool is set to block=True, then this method will
            block for ``pool_timeout`` seconds and raise EmptyPoolError if no
            connection is available within the time period.
    
        :param release_conn:
            If False, then the urlopen call will not release the connection
            back into the pool once a response is received (but will release if
            you read the entire contents of the response such as when
            `preload_content=True`). This is useful if you're not preloading
            the response's content immediately. You will need to call
            ``r.release_conn()`` on the response ``r`` to return the connection
            back into the pool. If None, it takes the value of
            ``response_kw.get('preload_content', True)``.
    
        :param chunked:
            If True, urllib3 will send the body using chunked transfer
            encoding. Otherwise, urllib3 will send the body using the standard
            content-length form. Defaults to False.
    
        :param int body_pos:
            Position to seek to in file-like body in the event of a retry or
            redirect. Typically this won't need to be set because urllib3 will
            auto-populate the value when needed.
    
        :param \\**response_kw:
            Additional parameters are passed to
            :meth:`urllib3.response.HTTPResponse.from_httplib`
        """
    
        parsed_url = parse_url(url)
        destination_scheme = parsed_url.scheme
    
        if headers is None:
            headers = self.headers
    
        if not isinstance(retries, Retry):
            retries = Retry.from_int(retries, redirect=redirect, default=self.retries)
    
        if release_conn is None:
            release_conn = response_kw.get("preload_content", True)
    
        # Check host
        if assert_same_host and not self.is_same_host(url):
            raise HostChangedError(self, url, retries)
    
        # Ensure that the URL we're connecting to is properly encoded
        if url.startswith("/"):
            url = six.ensure_str(_encode_target(url))
        else:
            url = six.ensure_str(parsed_url.url)
    
        conn = None
    
        # Track whether `conn` needs to be released before
        # returning/raising/recursing. Update this variable if necessary, and
        # leave `release_conn` constant throughout the function. That way, if
        # the function recurses, the original value of `release_conn` will be
        # passed down into the recursive call, and its value will be respected.
        #
        # See issue #651 [1] for details.
        #
        # [1] <https://github.com/urllib3/urllib3/issues/651>
        release_this_conn = release_conn
    
        http_tunnel_required = connection_requires_http_tunnel(
            self.proxy, self.proxy_config, destination_scheme
        )
    
        # Merge the proxy headers. Only done when not using HTTP CONNECT. We
        # have to copy the headers dict so we can safely change it without those
        # changes being reflected in anyone else's copy.
        if not http_tunnel_required:
            headers = headers.copy()
            headers.update(self.proxy_headers)
    
        # Must keep the exception bound to a separate variable or else Python 3
        # complains about UnboundLocalError.
        err = None
    
        # Keep track of whether we cleanly exited the except block. This
        # ensures we do proper cleanup in finally.
        clean_exit = False
    
        # Rewind body position, if needed. Record current position
        # for future rewinds in the event of a redirect/retry.
        body_pos = set_file_position(body, body_pos)
    
        try:
            # Request a connection from the queue.
            timeout_obj = self._get_timeout(timeout)
            conn = self._get_conn(timeout=pool_timeout)
    
            conn.timeout = timeout_obj.connect_timeout
    
            is_new_proxy_conn = self.proxy is not None and not getattr(
                conn, "sock", None
            )
            if is_new_proxy_conn and http_tunnel_required:
                self._prepare_proxy(conn)
    
            # Make the request on the httplib connection object.
            httplib_response = self._make_request(
                conn,
                method,
                url,
                timeout=timeout_obj,
                body=body,
                headers=headers,
                chunked=chunked,
            )
    
            # If we're going to release the connection in ``finally:``, then
            # the response doesn't need to know about the connection. Otherwise
            # it will also try to release it and we'll have a double-release
            # mess.
            response_conn = conn if not release_conn else None
    
            # Pass method to Response for length checking
            response_kw["request_method"] = method
    
            # Import httplib's response into our own wrapper object
            response = self.ResponseCls.from_httplib(
                httplib_response,
                pool=self,
                connection=response_conn,
                retries=retries,
                **response_kw
            )
    
            # Everything went great!
            clean_exit = True
    
        except EmptyPoolError:
            # Didn't get a connection from the pool, no need to clean up
            clean_exit = True
            release_this_conn = False
            raise
    
        except (
            TimeoutError,
            HTTPException,
            SocketError,
            ProtocolError,
            BaseSSLError,
            SSLError,
            CertificateError,
        ) as e:
            # Discard the connection for these exceptions. It will be
            # replaced during the next _get_conn() call.
            clean_exit = False
            if isinstance(e, (BaseSSLError, CertificateError)):
                e = SSLError(e)
            elif isinstance(e, (SocketError, NewConnectionError)) and self.proxy:
                e = ProxyError("Cannot connect to proxy.", e)
            elif isinstance(e, (SocketError, HTTPException)):
                e = ProtocolError("Connection aborted.", e)
    
>           retries = retries.increment(
                method, url, error=e, _pool=self, _stacktrace=sys.exc_info()[2]
            )

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py:755: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = Retry(total=0, connect=None, read=False, redirect=None, status=None)
method = 'POST'
url = '/api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf'
response = None
error = NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7f754a4bae50>: Failed to establish a new connection: [Errno 110] Connection timed out')
_pool = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754a4e70d0>
_stacktrace = <traceback object at 0x7f754a677c80>

    def increment(
        self,
        method=None,
        url=None,
        response=None,
        error=None,
        _pool=None,
        _stacktrace=None,
    ):
        """Return a new Retry object with incremented retry counters.
    
        :param response: A response object, or None, if the server did not
            return a response.
        :type response: :class:`~urllib3.response.HTTPResponse`
        :param Exception error: An error encountered during the request, or
            None if the response was received successfully.
    
        :return: A new ``Retry`` object.
        """
        if self.total is False and error:
            # Disabled, indicate to re-raise the error.
            raise six.reraise(type(error), error, _stacktrace)
    
        total = self.total
        if total is not None:
            total -= 1
    
        connect = self.connect
        read = self.read
        redirect = self.redirect
        status_count = self.status
        other = self.other
        cause = "unknown"
        status = None
        redirect_location = None
    
        if error and self._is_connection_error(error):
            # Connect retry?
            if connect is False:
                raise six.reraise(type(error), error, _stacktrace)
            elif connect is not None:
                connect -= 1
    
        elif error and self._is_read_error(error):
            # Read retry?
            if read is False or not self._is_method_retryable(method):
                raise six.reraise(type(error), error, _stacktrace)
            elif read is not None:
                read -= 1
    
        elif error:
            # Other retry?
            if other is not None:
                other -= 1
    
        elif response and response.get_redirect_location():
            # Redirect retry?
            if redirect is not None:
                redirect -= 1
            cause = "too many redirects"
            redirect_location = response.get_redirect_location()
            status = response.status
    
        else:
            # Incrementing because of a server error like a 500 in
            # status_forcelist and the given method is in the allowed_methods
            cause = ResponseError.GENERIC_ERROR
            if response and response.status:
                if status_count is not None:
                    status_count -= 1
                cause = ResponseError.SPECIFIC_ERROR.format(status_code=response.status)
                status = response.status
    
        history = self.history + (
            RequestHistory(method, url, error, status, redirect_location),
        )
    
        new_retry = self.new(
            total=total,
            connect=connect,
            read=read,
            redirect=redirect,
            status=status_count,
            other=other,
            history=history,
        )
    
        if new_retry.is_exhausted():
>           raise MaxRetryError(_pool, url, error or ResponseError(cause))
E           urllib3.exceptions.MaxRetryError: HTTPSConnectionPool(host='scicrunch.org', port=443): Max retries exceeded with url: /api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7f754a4bae50>: Failed to establish a new connection: [Errno 110] Connection timed out'))

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/util/retry.py:574: MaxRetryError

During handling of the above exception, another exception occurred:

client = <FlaskClient <Flask 'app.main'>>

    def test_scicrunch_filter_scaffolds(client):
>       r = client.get('/filter-search/?facet=scaffolds&term=datasets')

tests/test_scicrunch.py:129: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/werkzeug/test.py:1029: in get
    return self.open(*args, **kw)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/testing.py:222: in open
    return Client.open(
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/werkzeug/test.py:993: in open
    response = self.run_wsgi_app(environ.copy(), buffered=buffered)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/werkzeug/test.py:884: in run_wsgi_app
    rv = run_wsgi_app(self.application, environ, buffered=buffered)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/werkzeug/test.py:1119: in run_wsgi_app
    app_rv = app(environ, start_response)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:2463: in __call__
    return self.wsgi_app(environ, start_response)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:2449: in wsgi_app
    response = self.handle_exception(e)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask_cors/extension.py:161: in wrapped_function
    return cors_after_request(app.make_response(f(*args, **kwargs)))
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1866: in handle_exception
    reraise(exc_type, exc_value, tb)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/_compat.py:39: in reraise
    raise value
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:2446: in wsgi_app
    response = self.full_dispatch_request()
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1951: in full_dispatch_request
    rv = self.handle_user_exception(e)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask_cors/extension.py:161: in wrapped_function
    return cors_after_request(app.make_response(f(*args, **kwargs)))
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1820: in handle_user_exception
    reraise(exc_type, exc_value, tb)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/_compat.py:39: in reraise
    raise value
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1949: in full_dispatch_request
    rv = self.dispatch_request()
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1935: in dispatch_request
    return self.view_functions[rule.endpoint](**req.view_args)
app/main.py:707: in filter_search
    response = requests.post(
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/api.py:119: in post
    return request('post', url, data=data, json=json, **kwargs)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/api.py:61: in request
    return session.request(method=method, url=url, **kwargs)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/sessions.py:542: in request
    resp = self.send(prep, **send_kwargs)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/sessions.py:655: in send
    r = adapter.send(request, **kwargs)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <requests.adapters.HTTPAdapter object at 0x7f754a4e7550>
request = <PreparedRequest [POST]>, stream = False
timeout = Timeout(connect=None, read=None, total=None), verify = True
cert = None, proxies = OrderedDict()

    def send(self, request, stream=False, timeout=None, verify=True, cert=None, proxies=None):
        """Sends PreparedRequest object. Returns Response object.
    
        :param request: The :class:`PreparedRequest <PreparedRequest>` being sent.
        :param stream: (optional) Whether to stream the request content.
        :param timeout: (optional) How long to wait for the server to send
            data before giving up, as a float, or a :ref:`(connect timeout,
            read timeout) <timeouts>` tuple.
        :type timeout: float or tuple or urllib3 Timeout object
        :param verify: (optional) Either a boolean, in which case it controls whether
            we verify the server's TLS certificate, or a string, in which case it
            must be a path to a CA bundle to use
        :param cert: (optional) Any user-provided SSL certificate to be trusted.
        :param proxies: (optional) The proxies dictionary to apply to the request.
        :rtype: requests.Response
        """
    
        try:
            conn = self.get_connection(request.url, proxies)
        except LocationValueError as e:
            raise InvalidURL(e, request=request)
    
        self.cert_verify(conn, request.url, verify, cert)
        url = self.request_url(request, proxies)
        self.add_headers(request, stream=stream, timeout=timeout, verify=verify, cert=cert, proxies=proxies)
    
        chunked = not (request.body is None or 'Content-Length' in request.headers)
    
        if isinstance(timeout, tuple):
            try:
                connect, read = timeout
                timeout = TimeoutSauce(connect=connect, read=read)
            except ValueError as e:
                # this may raise a string formatting error.
                err = ("Invalid timeout {}. Pass a (connect, read) "
                       "timeout tuple, or a single float to set "
                       "both timeouts to the same value".format(timeout))
                raise ValueError(err)
        elif isinstance(timeout, TimeoutSauce):
            pass
        else:
            timeout = TimeoutSauce(connect=timeout, read=timeout)
    
        try:
            if not chunked:
                resp = conn.urlopen(
                    method=request.method,
                    url=url,
                    body=request.body,
                    headers=request.headers,
                    redirect=False,
                    assert_same_host=False,
                    preload_content=False,
                    decode_content=False,
                    retries=self.max_retries,
                    timeout=timeout
                )
    
            # Send the request.
            else:
                if hasattr(conn, 'proxy_pool'):
                    conn = conn.proxy_pool
    
                low_conn = conn._get_conn(timeout=DEFAULT_POOL_TIMEOUT)
    
                try:
                    low_conn.putrequest(request.method,
                                        url,
                                        skip_accept_encoding=True)
    
                    for header, value in request.headers.items():
                        low_conn.putheader(header, value)
    
                    low_conn.endheaders()
    
                    for i in request.body:
                        low_conn.send(hex(len(i))[2:].encode('utf-8'))
                        low_conn.send(b'\r\n')
                        low_conn.send(i)
                        low_conn.send(b'\r\n')
                    low_conn.send(b'0\r\n\r\n')
    
                    # Receive the response from the server
                    try:
                        # For Python 2.7, use buffering of HTTP responses
                        r = low_conn.getresponse(buffering=True)
                    except TypeError:
                        # For compatibility with Python 3.3+
                        r = low_conn.getresponse()
    
                    resp = HTTPResponse.from_httplib(
                        r,
                        pool=conn,
                        connection=low_conn,
                        preload_content=False,
                        decode_content=False
                    )
                except:
                    # If we hit any problems here, clean up the connection.
                    # Then, reraise so that we can handle the actual exception.
                    low_conn.close()
                    raise
    
        except (ProtocolError, socket.error) as err:
            raise ConnectionError(err, request=request)
    
        except MaxRetryError as e:
            if isinstance(e.reason, ConnectTimeoutError):
                # TODO: Remove this in 3.0.0: see #2811
                if not isinstance(e.reason, NewConnectionError):
                    raise ConnectTimeout(e, request=request)
    
            if isinstance(e.reason, ResponseError):
                raise RetryError(e, request=request)
    
            if isinstance(e.reason, _ProxyError):
                raise ProxyError(e, request=request)
    
            if isinstance(e.reason, _SSLError):
                # This branch is for urllib3 v1.22 and later.
                raise SSLError(e, request=request)
    
>           raise ConnectionError(e, request=request)
E           requests.exceptions.ConnectionError: HTTPSConnectionPool(host='scicrunch.org', port=443): Max retries exceeded with url: /api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7f754a4bae50>: Failed to establish a new connection: [Errno 110] Connection timed out'))

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/adapters.py:516: ConnectionError
_________________________ test_scicrunch_basic_search __________________________

self = <urllib3.connection.HTTPSConnection object at 0x7f754a645c40>

    def _new_conn(self):
        """Establish a socket connection and set nodelay settings on it.
    
        :return: New socket connection.
        """
        extra_kw = {}
        if self.source_address:
            extra_kw["source_address"] = self.source_address
    
        if self.socket_options:
            extra_kw["socket_options"] = self.socket_options
    
        try:
>           conn = connection.create_connection(
                (self._dns_host, self.port), self.timeout, **extra_kw
            )

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connection.py:169: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

address = ('scicrunch.org', 443), timeout = None, source_address = None
socket_options = [(6, 1, 1)]

    def create_connection(
        address,
        timeout=socket._GLOBAL_DEFAULT_TIMEOUT,
        source_address=None,
        socket_options=None,
    ):
        """Connect to *address* and return the socket object.
    
        Convenience function.  Connect to *address* (a 2-tuple ``(host,
        port)``) and return the socket object.  Passing the optional
        *timeout* parameter will set the timeout on the socket instance
        before attempting to connect.  If no *timeout* is supplied, the
        global default timeout setting returned by :func:`socket.getdefaulttimeout`
        is used.  If *source_address* is set it must be a tuple of (host, port)
        for the socket to bind as a source address before making the connection.
        An host of '' or port 0 tells the OS to use the default.
        """
    
        host, port = address
        if host.startswith("["):
            host = host.strip("[]")
        err = None
    
        # Using the value from allowed_gai_family() in the context of getaddrinfo lets
        # us select whether to work with IPv4 DNS records, IPv6 records, or both.
        # The original create_connection function always returns all records.
        family = allowed_gai_family()
    
        try:
            host.encode("idna")
        except UnicodeError:
            return six.raise_from(
                LocationParseError(u"'%s', label empty or too long" % host), None
            )
    
        for res in socket.getaddrinfo(host, port, family, socket.SOCK_STREAM):
            af, socktype, proto, canonname, sa = res
            sock = None
            try:
                sock = socket.socket(af, socktype, proto)
    
                # If provided, set socket level options before connecting.
                _set_socket_options(sock, socket_options)
    
                if timeout is not socket._GLOBAL_DEFAULT_TIMEOUT:
                    sock.settimeout(timeout)
                if source_address:
                    sock.bind(source_address)
                sock.connect(sa)
                return sock
    
            except socket.error as e:
                err = e
                if sock is not None:
                    sock.close()
                    sock = None
    
        if err is not None:
>           raise err

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/util/connection.py:96: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

address = ('scicrunch.org', 443), timeout = None, source_address = None
socket_options = [(6, 1, 1)]

    def create_connection(
        address,
        timeout=socket._GLOBAL_DEFAULT_TIMEOUT,
        source_address=None,
        socket_options=None,
    ):
        """Connect to *address* and return the socket object.
    
        Convenience function.  Connect to *address* (a 2-tuple ``(host,
        port)``) and return the socket object.  Passing the optional
        *timeout* parameter will set the timeout on the socket instance
        before attempting to connect.  If no *timeout* is supplied, the
        global default timeout setting returned by :func:`socket.getdefaulttimeout`
        is used.  If *source_address* is set it must be a tuple of (host, port)
        for the socket to bind as a source address before making the connection.
        An host of '' or port 0 tells the OS to use the default.
        """
    
        host, port = address
        if host.startswith("["):
            host = host.strip("[]")
        err = None
    
        # Using the value from allowed_gai_family() in the context of getaddrinfo lets
        # us select whether to work with IPv4 DNS records, IPv6 records, or both.
        # The original create_connection function always returns all records.
        family = allowed_gai_family()
    
        try:
            host.encode("idna")
        except UnicodeError:
            return six.raise_from(
                LocationParseError(u"'%s', label empty or too long" % host), None
            )
    
        for res in socket.getaddrinfo(host, port, family, socket.SOCK_STREAM):
            af, socktype, proto, canonname, sa = res
            sock = None
            try:
                sock = socket.socket(af, socktype, proto)
    
                # If provided, set socket level options before connecting.
                _set_socket_options(sock, socket_options)
    
                if timeout is not socket._GLOBAL_DEFAULT_TIMEOUT:
                    sock.settimeout(timeout)
                if source_address:
                    sock.bind(source_address)
>               sock.connect(sa)
E               TimeoutError: [Errno 110] Connection timed out

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/util/connection.py:86: TimeoutError

During handling of the above exception, another exception occurred:

self = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754a4d9a90>
method = 'POST'
url = '/api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf'
body = b'{"size": 10, "from": 0, "query": {"query_string": {"query": "(Heart)"}}}'
headers = {'User-Agent': 'python-requests/2.25.1', 'Accept-Encoding': 'gzip, deflate', 'Accept': '*/*', 'Connection': 'keep-alive', 'Content-Length': '72', 'Content-Type': 'application/json'}
retries = Retry(total=0, connect=None, read=False, redirect=None, status=None)
redirect = False, assert_same_host = False
timeout = Timeout(connect=None, read=None, total=None), pool_timeout = None
release_conn = False, chunked = False, body_pos = None
response_kw = {'decode_content': False, 'preload_content': False}
parsed_url = Url(scheme=None, auth=None, host=None, port=None, path='/api/1/elastic/SPARC_PortalDatasets_dev/_search', query='api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf', fragment=None)
destination_scheme = None, conn = None, release_this_conn = True
http_tunnel_required = False, err = None, clean_exit = False

    def urlopen(
        self,
        method,
        url,
        body=None,
        headers=None,
        retries=None,
        redirect=True,
        assert_same_host=True,
        timeout=_Default,
        pool_timeout=None,
        release_conn=None,
        chunked=False,
        body_pos=None,
        **response_kw
    ):
        """
        Get a connection from the pool and perform an HTTP request. This is the
        lowest level call for making a request, so you'll need to specify all
        the raw details.
    
        .. note::
    
           More commonly, it's appropriate to use a convenience method provided
           by :class:`.RequestMethods`, such as :meth:`request`.
    
        .. note::
    
           `release_conn` will only behave as expected if
           `preload_content=False` because we want to make
           `preload_content=False` the default behaviour someday soon without
           breaking backwards compatibility.
    
        :param method:
            HTTP request method (such as GET, POST, PUT, etc.)
    
        :param url:
            The URL to perform the request on.
    
        :param body:
            Data to send in the request body, either :class:`str`, :class:`bytes`,
            an iterable of :class:`str`/:class:`bytes`, or a file-like object.
    
        :param headers:
            Dictionary of custom headers to send, such as User-Agent,
            If-None-Match, etc. If None, pool headers are used. If provided,
            these headers completely replace any pool-specific headers.
    
        :param retries:
            Configure the number of retries to allow before raising a
            :class:`~urllib3.exceptions.MaxRetryError` exception.
    
            Pass ``None`` to retry until you receive a response. Pass a
            :class:`~urllib3.util.retry.Retry` object for fine-grained control
            over different types of retries.
            Pass an integer number to retry connection errors that many times,
            but no other types of errors. Pass zero to never retry.
    
            If ``False``, then retries are disabled and any exception is raised
            immediately. Also, instead of raising a MaxRetryError on redirects,
            the redirect response will be returned.
    
        :type retries: :class:`~urllib3.util.retry.Retry`, False, or an int.
    
        :param redirect:
            If True, automatically handle redirects (status codes 301, 302,
            303, 307, 308). Each redirect counts as a retry. Disabling retries
            will disable redirect, too.
    
        :param assert_same_host:
            If ``True``, will make sure that the host of the pool requests is
            consistent else will raise HostChangedError. When ``False``, you can
            use the pool on an HTTP proxy and request foreign hosts.
    
        :param timeout:
            If specified, overrides the default timeout for this one
            request. It may be a float (in seconds) or an instance of
            :class:`urllib3.util.Timeout`.
    
        :param pool_timeout:
            If set and the pool is set to block=True, then this method will
            block for ``pool_timeout`` seconds and raise EmptyPoolError if no
            connection is available within the time period.
    
        :param release_conn:
            If False, then the urlopen call will not release the connection
            back into the pool once a response is received (but will release if
            you read the entire contents of the response such as when
            `preload_content=True`). This is useful if you're not preloading
            the response's content immediately. You will need to call
            ``r.release_conn()`` on the response ``r`` to return the connection
            back into the pool. If None, it takes the value of
            ``response_kw.get('preload_content', True)``.
    
        :param chunked:
            If True, urllib3 will send the body using chunked transfer
            encoding. Otherwise, urllib3 will send the body using the standard
            content-length form. Defaults to False.
    
        :param int body_pos:
            Position to seek to in file-like body in the event of a retry or
            redirect. Typically this won't need to be set because urllib3 will
            auto-populate the value when needed.
    
        :param \\**response_kw:
            Additional parameters are passed to
            :meth:`urllib3.response.HTTPResponse.from_httplib`
        """
    
        parsed_url = parse_url(url)
        destination_scheme = parsed_url.scheme
    
        if headers is None:
            headers = self.headers
    
        if not isinstance(retries, Retry):
            retries = Retry.from_int(retries, redirect=redirect, default=self.retries)
    
        if release_conn is None:
            release_conn = response_kw.get("preload_content", True)
    
        # Check host
        if assert_same_host and not self.is_same_host(url):
            raise HostChangedError(self, url, retries)
    
        # Ensure that the URL we're connecting to is properly encoded
        if url.startswith("/"):
            url = six.ensure_str(_encode_target(url))
        else:
            url = six.ensure_str(parsed_url.url)
    
        conn = None
    
        # Track whether `conn` needs to be released before
        # returning/raising/recursing. Update this variable if necessary, and
        # leave `release_conn` constant throughout the function. That way, if
        # the function recurses, the original value of `release_conn` will be
        # passed down into the recursive call, and its value will be respected.
        #
        # See issue #651 [1] for details.
        #
        # [1] <https://github.com/urllib3/urllib3/issues/651>
        release_this_conn = release_conn
    
        http_tunnel_required = connection_requires_http_tunnel(
            self.proxy, self.proxy_config, destination_scheme
        )
    
        # Merge the proxy headers. Only done when not using HTTP CONNECT. We
        # have to copy the headers dict so we can safely change it without those
        # changes being reflected in anyone else's copy.
        if not http_tunnel_required:
            headers = headers.copy()
            headers.update(self.proxy_headers)
    
        # Must keep the exception bound to a separate variable or else Python 3
        # complains about UnboundLocalError.
        err = None
    
        # Keep track of whether we cleanly exited the except block. This
        # ensures we do proper cleanup in finally.
        clean_exit = False
    
        # Rewind body position, if needed. Record current position
        # for future rewinds in the event of a redirect/retry.
        body_pos = set_file_position(body, body_pos)
    
        try:
            # Request a connection from the queue.
            timeout_obj = self._get_timeout(timeout)
            conn = self._get_conn(timeout=pool_timeout)
    
            conn.timeout = timeout_obj.connect_timeout
    
            is_new_proxy_conn = self.proxy is not None and not getattr(
                conn, "sock", None
            )
            if is_new_proxy_conn and http_tunnel_required:
                self._prepare_proxy(conn)
    
            # Make the request on the httplib connection object.
>           httplib_response = self._make_request(
                conn,
                method,
                url,
                timeout=timeout_obj,
                body=body,
                headers=headers,
                chunked=chunked,
            )

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py:699: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754a4d9a90>
conn = <urllib3.connection.HTTPSConnection object at 0x7f754a645c40>
method = 'POST'
url = '/api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf'
timeout = Timeout(connect=None, read=None, total=None), chunked = False
httplib_request_kw = {'body': b'{"size": 10, "from": 0, "query": {"query_string": {"query": "(Heart)"}}}', 'headers': {'User-Agent': 'pytho...ip, deflate', 'Accept': '*/*', 'Connection': 'keep-alive', 'Content-Length': '72', 'Content-Type': 'application/json'}}
timeout_obj = Timeout(connect=None, read=None, total=None)

    def _make_request(
        self, conn, method, url, timeout=_Default, chunked=False, **httplib_request_kw
    ):
        """
        Perform a request on a given urllib connection object taken from our
        pool.
    
        :param conn:
            a connection from one of our connection pools
    
        :param timeout:
            Socket timeout in seconds for the request. This can be a
            float or integer, which will set the same timeout value for
            the socket connect and the socket read, or an instance of
            :class:`urllib3.util.Timeout`, which gives you more fine-grained
            control over your timeouts.
        """
        self.num_requests += 1
    
        timeout_obj = self._get_timeout(timeout)
        timeout_obj.start_connect()
        conn.timeout = timeout_obj.connect_timeout
    
        # Trigger any extra validation we need to do.
        try:
>           self._validate_conn(conn)

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py:382: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754a4d9a90>
conn = <urllib3.connection.HTTPSConnection object at 0x7f754a645c40>

    def _validate_conn(self, conn):
        """
        Called right before a request is made, after the socket is created.
        """
        super(HTTPSConnectionPool, self)._validate_conn(conn)
    
        # Force connect early to allow us to validate the connection.
        if not getattr(conn, "sock", None):  # AppEngine might not have  `.sock`
>           conn.connect()

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py:1010: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connection.HTTPSConnection object at 0x7f754a645c40>

    def connect(self):
        # Add certificate verification
>       conn = self._new_conn()

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connection.py:353: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connection.HTTPSConnection object at 0x7f754a645c40>

    def _new_conn(self):
        """Establish a socket connection and set nodelay settings on it.
    
        :return: New socket connection.
        """
        extra_kw = {}
        if self.source_address:
            extra_kw["source_address"] = self.source_address
    
        if self.socket_options:
            extra_kw["socket_options"] = self.socket_options
    
        try:
            conn = connection.create_connection(
                (self._dns_host, self.port), self.timeout, **extra_kw
            )
    
        except SocketTimeout:
            raise ConnectTimeoutError(
                self,
                "Connection to %s timed out. (connect timeout=%s)"
                % (self.host, self.timeout),
            )
    
        except SocketError as e:
>           raise NewConnectionError(
                self, "Failed to establish a new connection: %s" % e
            )
E           urllib3.exceptions.NewConnectionError: <urllib3.connection.HTTPSConnection object at 0x7f754a645c40>: Failed to establish a new connection: [Errno 110] Connection timed out

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connection.py:181: NewConnectionError

During handling of the above exception, another exception occurred:

self = <requests.adapters.HTTPAdapter object at 0x7f754a4d9250>
request = <PreparedRequest [POST]>, stream = False
timeout = Timeout(connect=None, read=None, total=None), verify = True
cert = None, proxies = OrderedDict()

    def send(self, request, stream=False, timeout=None, verify=True, cert=None, proxies=None):
        """Sends PreparedRequest object. Returns Response object.
    
        :param request: The :class:`PreparedRequest <PreparedRequest>` being sent.
        :param stream: (optional) Whether to stream the request content.
        :param timeout: (optional) How long to wait for the server to send
            data before giving up, as a float, or a :ref:`(connect timeout,
            read timeout) <timeouts>` tuple.
        :type timeout: float or tuple or urllib3 Timeout object
        :param verify: (optional) Either a boolean, in which case it controls whether
            we verify the server's TLS certificate, or a string, in which case it
            must be a path to a CA bundle to use
        :param cert: (optional) Any user-provided SSL certificate to be trusted.
        :param proxies: (optional) The proxies dictionary to apply to the request.
        :rtype: requests.Response
        """
    
        try:
            conn = self.get_connection(request.url, proxies)
        except LocationValueError as e:
            raise InvalidURL(e, request=request)
    
        self.cert_verify(conn, request.url, verify, cert)
        url = self.request_url(request, proxies)
        self.add_headers(request, stream=stream, timeout=timeout, verify=verify, cert=cert, proxies=proxies)
    
        chunked = not (request.body is None or 'Content-Length' in request.headers)
    
        if isinstance(timeout, tuple):
            try:
                connect, read = timeout
                timeout = TimeoutSauce(connect=connect, read=read)
            except ValueError as e:
                # this may raise a string formatting error.
                err = ("Invalid timeout {}. Pass a (connect, read) "
                       "timeout tuple, or a single float to set "
                       "both timeouts to the same value".format(timeout))
                raise ValueError(err)
        elif isinstance(timeout, TimeoutSauce):
            pass
        else:
            timeout = TimeoutSauce(connect=timeout, read=timeout)
    
        try:
            if not chunked:
>               resp = conn.urlopen(
                    method=request.method,
                    url=url,
                    body=request.body,
                    headers=request.headers,
                    redirect=False,
                    assert_same_host=False,
                    preload_content=False,
                    decode_content=False,
                    retries=self.max_retries,
                    timeout=timeout
                )

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/adapters.py:439: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754a4d9a90>
method = 'POST'
url = '/api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf'
body = b'{"size": 10, "from": 0, "query": {"query_string": {"query": "(Heart)"}}}'
headers = {'User-Agent': 'python-requests/2.25.1', 'Accept-Encoding': 'gzip, deflate', 'Accept': '*/*', 'Connection': 'keep-alive', 'Content-Length': '72', 'Content-Type': 'application/json'}
retries = Retry(total=0, connect=None, read=False, redirect=None, status=None)
redirect = False, assert_same_host = False
timeout = Timeout(connect=None, read=None, total=None), pool_timeout = None
release_conn = False, chunked = False, body_pos = None
response_kw = {'decode_content': False, 'preload_content': False}
parsed_url = Url(scheme=None, auth=None, host=None, port=None, path='/api/1/elastic/SPARC_PortalDatasets_dev/_search', query='api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf', fragment=None)
destination_scheme = None, conn = None, release_this_conn = True
http_tunnel_required = False, err = None, clean_exit = False

    def urlopen(
        self,
        method,
        url,
        body=None,
        headers=None,
        retries=None,
        redirect=True,
        assert_same_host=True,
        timeout=_Default,
        pool_timeout=None,
        release_conn=None,
        chunked=False,
        body_pos=None,
        **response_kw
    ):
        """
        Get a connection from the pool and perform an HTTP request. This is the
        lowest level call for making a request, so you'll need to specify all
        the raw details.
    
        .. note::
    
           More commonly, it's appropriate to use a convenience method provided
           by :class:`.RequestMethods`, such as :meth:`request`.
    
        .. note::
    
           `release_conn` will only behave as expected if
           `preload_content=False` because we want to make
           `preload_content=False` the default behaviour someday soon without
           breaking backwards compatibility.
    
        :param method:
            HTTP request method (such as GET, POST, PUT, etc.)
    
        :param url:
            The URL to perform the request on.
    
        :param body:
            Data to send in the request body, either :class:`str`, :class:`bytes`,
            an iterable of :class:`str`/:class:`bytes`, or a file-like object.
    
        :param headers:
            Dictionary of custom headers to send, such as User-Agent,
            If-None-Match, etc. If None, pool headers are used. If provided,
            these headers completely replace any pool-specific headers.
    
        :param retries:
            Configure the number of retries to allow before raising a
            :class:`~urllib3.exceptions.MaxRetryError` exception.
    
            Pass ``None`` to retry until you receive a response. Pass a
            :class:`~urllib3.util.retry.Retry` object for fine-grained control
            over different types of retries.
            Pass an integer number to retry connection errors that many times,
            but no other types of errors. Pass zero to never retry.
    
            If ``False``, then retries are disabled and any exception is raised
            immediately. Also, instead of raising a MaxRetryError on redirects,
            the redirect response will be returned.
    
        :type retries: :class:`~urllib3.util.retry.Retry`, False, or an int.
    
        :param redirect:
            If True, automatically handle redirects (status codes 301, 302,
            303, 307, 308). Each redirect counts as a retry. Disabling retries
            will disable redirect, too.
    
        :param assert_same_host:
            If ``True``, will make sure that the host of the pool requests is
            consistent else will raise HostChangedError. When ``False``, you can
            use the pool on an HTTP proxy and request foreign hosts.
    
        :param timeout:
            If specified, overrides the default timeout for this one
            request. It may be a float (in seconds) or an instance of
            :class:`urllib3.util.Timeout`.
    
        :param pool_timeout:
            If set and the pool is set to block=True, then this method will
            block for ``pool_timeout`` seconds and raise EmptyPoolError if no
            connection is available within the time period.
    
        :param release_conn:
            If False, then the urlopen call will not release the connection
            back into the pool once a response is received (but will release if
            you read the entire contents of the response such as when
            `preload_content=True`). This is useful if you're not preloading
            the response's content immediately. You will need to call
            ``r.release_conn()`` on the response ``r`` to return the connection
            back into the pool. If None, it takes the value of
            ``response_kw.get('preload_content', True)``.
    
        :param chunked:
            If True, urllib3 will send the body using chunked transfer
            encoding. Otherwise, urllib3 will send the body using the standard
            content-length form. Defaults to False.
    
        :param int body_pos:
            Position to seek to in file-like body in the event of a retry or
            redirect. Typically this won't need to be set because urllib3 will
            auto-populate the value when needed.
    
        :param \\**response_kw:
            Additional parameters are passed to
            :meth:`urllib3.response.HTTPResponse.from_httplib`
        """
    
        parsed_url = parse_url(url)
        destination_scheme = parsed_url.scheme
    
        if headers is None:
            headers = self.headers
    
        if not isinstance(retries, Retry):
            retries = Retry.from_int(retries, redirect=redirect, default=self.retries)
    
        if release_conn is None:
            release_conn = response_kw.get("preload_content", True)
    
        # Check host
        if assert_same_host and not self.is_same_host(url):
            raise HostChangedError(self, url, retries)
    
        # Ensure that the URL we're connecting to is properly encoded
        if url.startswith("/"):
            url = six.ensure_str(_encode_target(url))
        else:
            url = six.ensure_str(parsed_url.url)
    
        conn = None
    
        # Track whether `conn` needs to be released before
        # returning/raising/recursing. Update this variable if necessary, and
        # leave `release_conn` constant throughout the function. That way, if
        # the function recurses, the original value of `release_conn` will be
        # passed down into the recursive call, and its value will be respected.
        #
        # See issue #651 [1] for details.
        #
        # [1] <https://github.com/urllib3/urllib3/issues/651>
        release_this_conn = release_conn
    
        http_tunnel_required = connection_requires_http_tunnel(
            self.proxy, self.proxy_config, destination_scheme
        )
    
        # Merge the proxy headers. Only done when not using HTTP CONNECT. We
        # have to copy the headers dict so we can safely change it without those
        # changes being reflected in anyone else's copy.
        if not http_tunnel_required:
            headers = headers.copy()
            headers.update(self.proxy_headers)
    
        # Must keep the exception bound to a separate variable or else Python 3
        # complains about UnboundLocalError.
        err = None
    
        # Keep track of whether we cleanly exited the except block. This
        # ensures we do proper cleanup in finally.
        clean_exit = False
    
        # Rewind body position, if needed. Record current position
        # for future rewinds in the event of a redirect/retry.
        body_pos = set_file_position(body, body_pos)
    
        try:
            # Request a connection from the queue.
            timeout_obj = self._get_timeout(timeout)
            conn = self._get_conn(timeout=pool_timeout)
    
            conn.timeout = timeout_obj.connect_timeout
    
            is_new_proxy_conn = self.proxy is not None and not getattr(
                conn, "sock", None
            )
            if is_new_proxy_conn and http_tunnel_required:
                self._prepare_proxy(conn)
    
            # Make the request on the httplib connection object.
            httplib_response = self._make_request(
                conn,
                method,
                url,
                timeout=timeout_obj,
                body=body,
                headers=headers,
                chunked=chunked,
            )
    
            # If we're going to release the connection in ``finally:``, then
            # the response doesn't need to know about the connection. Otherwise
            # it will also try to release it and we'll have a double-release
            # mess.
            response_conn = conn if not release_conn else None
    
            # Pass method to Response for length checking
            response_kw["request_method"] = method
    
            # Import httplib's response into our own wrapper object
            response = self.ResponseCls.from_httplib(
                httplib_response,
                pool=self,
                connection=response_conn,
                retries=retries,
                **response_kw
            )
    
            # Everything went great!
            clean_exit = True
    
        except EmptyPoolError:
            # Didn't get a connection from the pool, no need to clean up
            clean_exit = True
            release_this_conn = False
            raise
    
        except (
            TimeoutError,
            HTTPException,
            SocketError,
            ProtocolError,
            BaseSSLError,
            SSLError,
            CertificateError,
        ) as e:
            # Discard the connection for these exceptions. It will be
            # replaced during the next _get_conn() call.
            clean_exit = False
            if isinstance(e, (BaseSSLError, CertificateError)):
                e = SSLError(e)
            elif isinstance(e, (SocketError, NewConnectionError)) and self.proxy:
                e = ProxyError("Cannot connect to proxy.", e)
            elif isinstance(e, (SocketError, HTTPException)):
                e = ProtocolError("Connection aborted.", e)
    
>           retries = retries.increment(
                method, url, error=e, _pool=self, _stacktrace=sys.exc_info()[2]
            )

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py:755: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = Retry(total=0, connect=None, read=False, redirect=None, status=None)
method = 'POST'
url = '/api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf'
response = None
error = NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7f754a645c40>: Failed to establish a new connection: [Errno 110] Connection timed out')
_pool = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754a4d9a90>
_stacktrace = <traceback object at 0x7f754a4f7a40>

    def increment(
        self,
        method=None,
        url=None,
        response=None,
        error=None,
        _pool=None,
        _stacktrace=None,
    ):
        """Return a new Retry object with incremented retry counters.
    
        :param response: A response object, or None, if the server did not
            return a response.
        :type response: :class:`~urllib3.response.HTTPResponse`
        :param Exception error: An error encountered during the request, or
            None if the response was received successfully.
    
        :return: A new ``Retry`` object.
        """
        if self.total is False and error:
            # Disabled, indicate to re-raise the error.
            raise six.reraise(type(error), error, _stacktrace)
    
        total = self.total
        if total is not None:
            total -= 1
    
        connect = self.connect
        read = self.read
        redirect = self.redirect
        status_count = self.status
        other = self.other
        cause = "unknown"
        status = None
        redirect_location = None
    
        if error and self._is_connection_error(error):
            # Connect retry?
            if connect is False:
                raise six.reraise(type(error), error, _stacktrace)
            elif connect is not None:
                connect -= 1
    
        elif error and self._is_read_error(error):
            # Read retry?
            if read is False or not self._is_method_retryable(method):
                raise six.reraise(type(error), error, _stacktrace)
            elif read is not None:
                read -= 1
    
        elif error:
            # Other retry?
            if other is not None:
                other -= 1
    
        elif response and response.get_redirect_location():
            # Redirect retry?
            if redirect is not None:
                redirect -= 1
            cause = "too many redirects"
            redirect_location = response.get_redirect_location()
            status = response.status
    
        else:
            # Incrementing because of a server error like a 500 in
            # status_forcelist and the given method is in the allowed_methods
            cause = ResponseError.GENERIC_ERROR
            if response and response.status:
                if status_count is not None:
                    status_count -= 1
                cause = ResponseError.SPECIFIC_ERROR.format(status_code=response.status)
                status = response.status
    
        history = self.history + (
            RequestHistory(method, url, error, status, redirect_location),
        )
    
        new_retry = self.new(
            total=total,
            connect=connect,
            read=read,
            redirect=redirect,
            status=status_count,
            other=other,
            history=history,
        )
    
        if new_retry.is_exhausted():
>           raise MaxRetryError(_pool, url, error or ResponseError(cause))
E           urllib3.exceptions.MaxRetryError: HTTPSConnectionPool(host='scicrunch.org', port=443): Max retries exceeded with url: /api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7f754a645c40>: Failed to establish a new connection: [Errno 110] Connection timed out'))

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/util/retry.py:574: MaxRetryError

During handling of the above exception, another exception occurred:

client = <FlaskClient <Flask 'app.main'>>

    def test_scicrunch_basic_search(client):
>       r = client.get('/filter-search/Heart/?facet=All+Species&term=species')

tests/test_scicrunch.py:134: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/werkzeug/test.py:1029: in get
    return self.open(*args, **kw)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/testing.py:222: in open
    return Client.open(
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/werkzeug/test.py:993: in open
    response = self.run_wsgi_app(environ.copy(), buffered=buffered)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/werkzeug/test.py:884: in run_wsgi_app
    rv = run_wsgi_app(self.application, environ, buffered=buffered)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/werkzeug/test.py:1119: in run_wsgi_app
    app_rv = app(environ, start_response)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:2463: in __call__
    return self.wsgi_app(environ, start_response)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:2449: in wsgi_app
    response = self.handle_exception(e)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask_cors/extension.py:161: in wrapped_function
    return cors_after_request(app.make_response(f(*args, **kwargs)))
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1866: in handle_exception
    reraise(exc_type, exc_value, tb)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/_compat.py:39: in reraise
    raise value
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:2446: in wsgi_app
    response = self.full_dispatch_request()
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1951: in full_dispatch_request
    rv = self.handle_user_exception(e)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask_cors/extension.py:161: in wrapped_function
    return cors_after_request(app.make_response(f(*args, **kwargs)))
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1820: in handle_user_exception
    reraise(exc_type, exc_value, tb)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/_compat.py:39: in reraise
    raise value
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1949: in full_dispatch_request
    rv = self.dispatch_request()
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1935: in dispatch_request
    return self.view_functions[rule.endpoint](**req.view_args)
app/main.py:707: in filter_search
    response = requests.post(
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/api.py:119: in post
    return request('post', url, data=data, json=json, **kwargs)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/api.py:61: in request
    return session.request(method=method, url=url, **kwargs)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/sessions.py:542: in request
    resp = self.send(prep, **send_kwargs)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/sessions.py:655: in send
    r = adapter.send(request, **kwargs)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <requests.adapters.HTTPAdapter object at 0x7f754a4d9250>
request = <PreparedRequest [POST]>, stream = False
timeout = Timeout(connect=None, read=None, total=None), verify = True
cert = None, proxies = OrderedDict()

    def send(self, request, stream=False, timeout=None, verify=True, cert=None, proxies=None):
        """Sends PreparedRequest object. Returns Response object.
    
        :param request: The :class:`PreparedRequest <PreparedRequest>` being sent.
        :param stream: (optional) Whether to stream the request content.
        :param timeout: (optional) How long to wait for the server to send
            data before giving up, as a float, or a :ref:`(connect timeout,
            read timeout) <timeouts>` tuple.
        :type timeout: float or tuple or urllib3 Timeout object
        :param verify: (optional) Either a boolean, in which case it controls whether
            we verify the server's TLS certificate, or a string, in which case it
            must be a path to a CA bundle to use
        :param cert: (optional) Any user-provided SSL certificate to be trusted.
        :param proxies: (optional) The proxies dictionary to apply to the request.
        :rtype: requests.Response
        """
    
        try:
            conn = self.get_connection(request.url, proxies)
        except LocationValueError as e:
            raise InvalidURL(e, request=request)
    
        self.cert_verify(conn, request.url, verify, cert)
        url = self.request_url(request, proxies)
        self.add_headers(request, stream=stream, timeout=timeout, verify=verify, cert=cert, proxies=proxies)
    
        chunked = not (request.body is None or 'Content-Length' in request.headers)
    
        if isinstance(timeout, tuple):
            try:
                connect, read = timeout
                timeout = TimeoutSauce(connect=connect, read=read)
            except ValueError as e:
                # this may raise a string formatting error.
                err = ("Invalid timeout {}. Pass a (connect, read) "
                       "timeout tuple, or a single float to set "
                       "both timeouts to the same value".format(timeout))
                raise ValueError(err)
        elif isinstance(timeout, TimeoutSauce):
            pass
        else:
            timeout = TimeoutSauce(connect=timeout, read=timeout)
    
        try:
            if not chunked:
                resp = conn.urlopen(
                    method=request.method,
                    url=url,
                    body=request.body,
                    headers=request.headers,
                    redirect=False,
                    assert_same_host=False,
                    preload_content=False,
                    decode_content=False,
                    retries=self.max_retries,
                    timeout=timeout
                )
    
            # Send the request.
            else:
                if hasattr(conn, 'proxy_pool'):
                    conn = conn.proxy_pool
    
                low_conn = conn._get_conn(timeout=DEFAULT_POOL_TIMEOUT)
    
                try:
                    low_conn.putrequest(request.method,
                                        url,
                                        skip_accept_encoding=True)
    
                    for header, value in request.headers.items():
                        low_conn.putheader(header, value)
    
                    low_conn.endheaders()
    
                    for i in request.body:
                        low_conn.send(hex(len(i))[2:].encode('utf-8'))
                        low_conn.send(b'\r\n')
                        low_conn.send(i)
                        low_conn.send(b'\r\n')
                    low_conn.send(b'0\r\n\r\n')
    
                    # Receive the response from the server
                    try:
                        # For Python 2.7, use buffering of HTTP responses
                        r = low_conn.getresponse(buffering=True)
                    except TypeError:
                        # For compatibility with Python 3.3+
                        r = low_conn.getresponse()
    
                    resp = HTTPResponse.from_httplib(
                        r,
                        pool=conn,
                        connection=low_conn,
                        preload_content=False,
                        decode_content=False
                    )
                except:
                    # If we hit any problems here, clean up the connection.
                    # Then, reraise so that we can handle the actual exception.
                    low_conn.close()
                    raise
    
        except (ProtocolError, socket.error) as err:
            raise ConnectionError(err, request=request)
    
        except MaxRetryError as e:
            if isinstance(e.reason, ConnectTimeoutError):
                # TODO: Remove this in 3.0.0: see #2811
                if not isinstance(e.reason, NewConnectionError):
                    raise ConnectTimeout(e, request=request)
    
            if isinstance(e.reason, ResponseError):
                raise RetryError(e, request=request)
    
            if isinstance(e.reason, _ProxyError):
                raise ProxyError(e, request=request)
    
            if isinstance(e.reason, _SSLError):
                # This branch is for urllib3 v1.22 and later.
                raise SSLError(e, request=request)
    
>           raise ConnectionError(e, request=request)
E           requests.exceptions.ConnectionError: HTTPSConnectionPool(host='scicrunch.org', port=443): Max retries exceeded with url: /api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7f754a645c40>: Failed to establish a new connection: [Errno 110] Connection timed out'))

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/adapters.py:516: ConnectionError
_________________________ test_scicrunch_image_search __________________________

self = <urllib3.connection.HTTPSConnection object at 0x7f754ad6ebb0>

    def _new_conn(self):
        """Establish a socket connection and set nodelay settings on it.
    
        :return: New socket connection.
        """
        extra_kw = {}
        if self.source_address:
            extra_kw["source_address"] = self.source_address
    
        if self.socket_options:
            extra_kw["socket_options"] = self.socket_options
    
        try:
>           conn = connection.create_connection(
                (self._dns_host, self.port), self.timeout, **extra_kw
            )

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connection.py:169: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

address = ('scicrunch.org', 443), timeout = None, source_address = None
socket_options = [(6, 1, 1)]

    def create_connection(
        address,
        timeout=socket._GLOBAL_DEFAULT_TIMEOUT,
        source_address=None,
        socket_options=None,
    ):
        """Connect to *address* and return the socket object.
    
        Convenience function.  Connect to *address* (a 2-tuple ``(host,
        port)``) and return the socket object.  Passing the optional
        *timeout* parameter will set the timeout on the socket instance
        before attempting to connect.  If no *timeout* is supplied, the
        global default timeout setting returned by :func:`socket.getdefaulttimeout`
        is used.  If *source_address* is set it must be a tuple of (host, port)
        for the socket to bind as a source address before making the connection.
        An host of '' or port 0 tells the OS to use the default.
        """
    
        host, port = address
        if host.startswith("["):
            host = host.strip("[]")
        err = None
    
        # Using the value from allowed_gai_family() in the context of getaddrinfo lets
        # us select whether to work with IPv4 DNS records, IPv6 records, or both.
        # The original create_connection function always returns all records.
        family = allowed_gai_family()
    
        try:
            host.encode("idna")
        except UnicodeError:
            return six.raise_from(
                LocationParseError(u"'%s', label empty or too long" % host), None
            )
    
        for res in socket.getaddrinfo(host, port, family, socket.SOCK_STREAM):
            af, socktype, proto, canonname, sa = res
            sock = None
            try:
                sock = socket.socket(af, socktype, proto)
    
                # If provided, set socket level options before connecting.
                _set_socket_options(sock, socket_options)
    
                if timeout is not socket._GLOBAL_DEFAULT_TIMEOUT:
                    sock.settimeout(timeout)
                if source_address:
                    sock.bind(source_address)
                sock.connect(sa)
                return sock
    
            except socket.error as e:
                err = e
                if sock is not None:
                    sock.close()
                    sock = None
    
        if err is not None:
>           raise err

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/util/connection.py:96: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

address = ('scicrunch.org', 443), timeout = None, source_address = None
socket_options = [(6, 1, 1)]

    def create_connection(
        address,
        timeout=socket._GLOBAL_DEFAULT_TIMEOUT,
        source_address=None,
        socket_options=None,
    ):
        """Connect to *address* and return the socket object.
    
        Convenience function.  Connect to *address* (a 2-tuple ``(host,
        port)``) and return the socket object.  Passing the optional
        *timeout* parameter will set the timeout on the socket instance
        before attempting to connect.  If no *timeout* is supplied, the
        global default timeout setting returned by :func:`socket.getdefaulttimeout`
        is used.  If *source_address* is set it must be a tuple of (host, port)
        for the socket to bind as a source address before making the connection.
        An host of '' or port 0 tells the OS to use the default.
        """
    
        host, port = address
        if host.startswith("["):
            host = host.strip("[]")
        err = None
    
        # Using the value from allowed_gai_family() in the context of getaddrinfo lets
        # us select whether to work with IPv4 DNS records, IPv6 records, or both.
        # The original create_connection function always returns all records.
        family = allowed_gai_family()
    
        try:
            host.encode("idna")
        except UnicodeError:
            return six.raise_from(
                LocationParseError(u"'%s', label empty or too long" % host), None
            )
    
        for res in socket.getaddrinfo(host, port, family, socket.SOCK_STREAM):
            af, socktype, proto, canonname, sa = res
            sock = None
            try:
                sock = socket.socket(af, socktype, proto)
    
                # If provided, set socket level options before connecting.
                _set_socket_options(sock, socket_options)
    
                if timeout is not socket._GLOBAL_DEFAULT_TIMEOUT:
                    sock.settimeout(timeout)
                if source_address:
                    sock.bind(source_address)
>               sock.connect(sa)
E               TimeoutError: [Errno 110] Connection timed out

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/util/connection.py:86: TimeoutError

During handling of the above exception, another exception occurred:

self = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754ad6efa0>
method = 'POST'
url = '/api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf'
body = b'{"query": {"query_string": {"fields": ["*mimetype.name"], "query": "\\"[\'\\"*jp2* OR *vnd.ome.xml* OR *jpx*\\"\']\\""}}}'
headers = {'User-Agent': 'python-requests/2.25.1', 'Accept-Encoding': 'gzip, deflate', 'Accept': '*/*', 'Connection': 'keep-alive', 'Content-Length': '115', 'Content-Type': 'application/json'}
retries = Retry(total=0, connect=None, read=False, redirect=None, status=None)
redirect = False, assert_same_host = False
timeout = Timeout(connect=None, read=None, total=None), pool_timeout = None
release_conn = False, chunked = False, body_pos = None
response_kw = {'decode_content': False, 'preload_content': False}
parsed_url = Url(scheme=None, auth=None, host=None, port=None, path='/api/1/elastic/SPARC_PortalDatasets_dev/_search', query='api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf', fragment=None)
destination_scheme = None, conn = None, release_this_conn = True
http_tunnel_required = False, err = None, clean_exit = False

    def urlopen(
        self,
        method,
        url,
        body=None,
        headers=None,
        retries=None,
        redirect=True,
        assert_same_host=True,
        timeout=_Default,
        pool_timeout=None,
        release_conn=None,
        chunked=False,
        body_pos=None,
        **response_kw
    ):
        """
        Get a connection from the pool and perform an HTTP request. This is the
        lowest level call for making a request, so you'll need to specify all
        the raw details.
    
        .. note::
    
           More commonly, it's appropriate to use a convenience method provided
           by :class:`.RequestMethods`, such as :meth:`request`.
    
        .. note::
    
           `release_conn` will only behave as expected if
           `preload_content=False` because we want to make
           `preload_content=False` the default behaviour someday soon without
           breaking backwards compatibility.
    
        :param method:
            HTTP request method (such as GET, POST, PUT, etc.)
    
        :param url:
            The URL to perform the request on.
    
        :param body:
            Data to send in the request body, either :class:`str`, :class:`bytes`,
            an iterable of :class:`str`/:class:`bytes`, or a file-like object.
    
        :param headers:
            Dictionary of custom headers to send, such as User-Agent,
            If-None-Match, etc. If None, pool headers are used. If provided,
            these headers completely replace any pool-specific headers.
    
        :param retries:
            Configure the number of retries to allow before raising a
            :class:`~urllib3.exceptions.MaxRetryError` exception.
    
            Pass ``None`` to retry until you receive a response. Pass a
            :class:`~urllib3.util.retry.Retry` object for fine-grained control
            over different types of retries.
            Pass an integer number to retry connection errors that many times,
            but no other types of errors. Pass zero to never retry.
    
            If ``False``, then retries are disabled and any exception is raised
            immediately. Also, instead of raising a MaxRetryError on redirects,
            the redirect response will be returned.
    
        :type retries: :class:`~urllib3.util.retry.Retry`, False, or an int.
    
        :param redirect:
            If True, automatically handle redirects (status codes 301, 302,
            303, 307, 308). Each redirect counts as a retry. Disabling retries
            will disable redirect, too.
    
        :param assert_same_host:
            If ``True``, will make sure that the host of the pool requests is
            consistent else will raise HostChangedError. When ``False``, you can
            use the pool on an HTTP proxy and request foreign hosts.
    
        :param timeout:
            If specified, overrides the default timeout for this one
            request. It may be a float (in seconds) or an instance of
            :class:`urllib3.util.Timeout`.
    
        :param pool_timeout:
            If set and the pool is set to block=True, then this method will
            block for ``pool_timeout`` seconds and raise EmptyPoolError if no
            connection is available within the time period.
    
        :param release_conn:
            If False, then the urlopen call will not release the connection
            back into the pool once a response is received (but will release if
            you read the entire contents of the response such as when
            `preload_content=True`). This is useful if you're not preloading
            the response's content immediately. You will need to call
            ``r.release_conn()`` on the response ``r`` to return the connection
            back into the pool. If None, it takes the value of
            ``response_kw.get('preload_content', True)``.
    
        :param chunked:
            If True, urllib3 will send the body using chunked transfer
            encoding. Otherwise, urllib3 will send the body using the standard
            content-length form. Defaults to False.
    
        :param int body_pos:
            Position to seek to in file-like body in the event of a retry or
            redirect. Typically this won't need to be set because urllib3 will
            auto-populate the value when needed.
    
        :param \\**response_kw:
            Additional parameters are passed to
            :meth:`urllib3.response.HTTPResponse.from_httplib`
        """
    
        parsed_url = parse_url(url)
        destination_scheme = parsed_url.scheme
    
        if headers is None:
            headers = self.headers
    
        if not isinstance(retries, Retry):
            retries = Retry.from_int(retries, redirect=redirect, default=self.retries)
    
        if release_conn is None:
            release_conn = response_kw.get("preload_content", True)
    
        # Check host
        if assert_same_host and not self.is_same_host(url):
            raise HostChangedError(self, url, retries)
    
        # Ensure that the URL we're connecting to is properly encoded
        if url.startswith("/"):
            url = six.ensure_str(_encode_target(url))
        else:
            url = six.ensure_str(parsed_url.url)
    
        conn = None
    
        # Track whether `conn` needs to be released before
        # returning/raising/recursing. Update this variable if necessary, and
        # leave `release_conn` constant throughout the function. That way, if
        # the function recurses, the original value of `release_conn` will be
        # passed down into the recursive call, and its value will be respected.
        #
        # See issue #651 [1] for details.
        #
        # [1] <https://github.com/urllib3/urllib3/issues/651>
        release_this_conn = release_conn
    
        http_tunnel_required = connection_requires_http_tunnel(
            self.proxy, self.proxy_config, destination_scheme
        )
    
        # Merge the proxy headers. Only done when not using HTTP CONNECT. We
        # have to copy the headers dict so we can safely change it without those
        # changes being reflected in anyone else's copy.
        if not http_tunnel_required:
            headers = headers.copy()
            headers.update(self.proxy_headers)
    
        # Must keep the exception bound to a separate variable or else Python 3
        # complains about UnboundLocalError.
        err = None
    
        # Keep track of whether we cleanly exited the except block. This
        # ensures we do proper cleanup in finally.
        clean_exit = False
    
        # Rewind body position, if needed. Record current position
        # for future rewinds in the event of a redirect/retry.
        body_pos = set_file_position(body, body_pos)
    
        try:
            # Request a connection from the queue.
            timeout_obj = self._get_timeout(timeout)
            conn = self._get_conn(timeout=pool_timeout)
    
            conn.timeout = timeout_obj.connect_timeout
    
            is_new_proxy_conn = self.proxy is not None and not getattr(
                conn, "sock", None
            )
            if is_new_proxy_conn and http_tunnel_required:
                self._prepare_proxy(conn)
    
            # Make the request on the httplib connection object.
>           httplib_response = self._make_request(
                conn,
                method,
                url,
                timeout=timeout_obj,
                body=body,
                headers=headers,
                chunked=chunked,
            )

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py:699: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754ad6efa0>
conn = <urllib3.connection.HTTPSConnection object at 0x7f754ad6ebb0>
method = 'POST'
url = '/api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf'
timeout = Timeout(connect=None, read=None, total=None), chunked = False
httplib_request_kw = {'body': b'{"query": {"query_string": {"fields": ["*mimetype.name"], "query": "\\"[\'\\"*jp2* OR *vnd.ome.xml* OR *jpx...p, deflate', 'Accept': '*/*', 'Connection': 'keep-alive', 'Content-Length': '115', 'Content-Type': 'application/json'}}
timeout_obj = Timeout(connect=None, read=None, total=None)

    def _make_request(
        self, conn, method, url, timeout=_Default, chunked=False, **httplib_request_kw
    ):
        """
        Perform a request on a given urllib connection object taken from our
        pool.
    
        :param conn:
            a connection from one of our connection pools
    
        :param timeout:
            Socket timeout in seconds for the request. This can be a
            float or integer, which will set the same timeout value for
            the socket connect and the socket read, or an instance of
            :class:`urllib3.util.Timeout`, which gives you more fine-grained
            control over your timeouts.
        """
        self.num_requests += 1
    
        timeout_obj = self._get_timeout(timeout)
        timeout_obj.start_connect()
        conn.timeout = timeout_obj.connect_timeout
    
        # Trigger any extra validation we need to do.
        try:
>           self._validate_conn(conn)

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py:382: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754ad6efa0>
conn = <urllib3.connection.HTTPSConnection object at 0x7f754ad6ebb0>

    def _validate_conn(self, conn):
        """
        Called right before a request is made, after the socket is created.
        """
        super(HTTPSConnectionPool, self)._validate_conn(conn)
    
        # Force connect early to allow us to validate the connection.
        if not getattr(conn, "sock", None):  # AppEngine might not have  `.sock`
>           conn.connect()

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py:1010: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connection.HTTPSConnection object at 0x7f754ad6ebb0>

    def connect(self):
        # Add certificate verification
>       conn = self._new_conn()

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connection.py:353: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connection.HTTPSConnection object at 0x7f754ad6ebb0>

    def _new_conn(self):
        """Establish a socket connection and set nodelay settings on it.
    
        :return: New socket connection.
        """
        extra_kw = {}
        if self.source_address:
            extra_kw["source_address"] = self.source_address
    
        if self.socket_options:
            extra_kw["socket_options"] = self.socket_options
    
        try:
            conn = connection.create_connection(
                (self._dns_host, self.port), self.timeout, **extra_kw
            )
    
        except SocketTimeout:
            raise ConnectTimeoutError(
                self,
                "Connection to %s timed out. (connect timeout=%s)"
                % (self.host, self.timeout),
            )
    
        except SocketError as e:
>           raise NewConnectionError(
                self, "Failed to establish a new connection: %s" % e
            )
E           urllib3.exceptions.NewConnectionError: <urllib3.connection.HTTPSConnection object at 0x7f754ad6ebb0>: Failed to establish a new connection: [Errno 110] Connection timed out

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connection.py:181: NewConnectionError

During handling of the above exception, another exception occurred:

self = <requests.adapters.HTTPAdapter object at 0x7f754a626610>
request = <PreparedRequest [POST]>, stream = False
timeout = Timeout(connect=None, read=None, total=None), verify = True
cert = None, proxies = OrderedDict()

    def send(self, request, stream=False, timeout=None, verify=True, cert=None, proxies=None):
        """Sends PreparedRequest object. Returns Response object.
    
        :param request: The :class:`PreparedRequest <PreparedRequest>` being sent.
        :param stream: (optional) Whether to stream the request content.
        :param timeout: (optional) How long to wait for the server to send
            data before giving up, as a float, or a :ref:`(connect timeout,
            read timeout) <timeouts>` tuple.
        :type timeout: float or tuple or urllib3 Timeout object
        :param verify: (optional) Either a boolean, in which case it controls whether
            we verify the server's TLS certificate, or a string, in which case it
            must be a path to a CA bundle to use
        :param cert: (optional) Any user-provided SSL certificate to be trusted.
        :param proxies: (optional) The proxies dictionary to apply to the request.
        :rtype: requests.Response
        """
    
        try:
            conn = self.get_connection(request.url, proxies)
        except LocationValueError as e:
            raise InvalidURL(e, request=request)
    
        self.cert_verify(conn, request.url, verify, cert)
        url = self.request_url(request, proxies)
        self.add_headers(request, stream=stream, timeout=timeout, verify=verify, cert=cert, proxies=proxies)
    
        chunked = not (request.body is None or 'Content-Length' in request.headers)
    
        if isinstance(timeout, tuple):
            try:
                connect, read = timeout
                timeout = TimeoutSauce(connect=connect, read=read)
            except ValueError as e:
                # this may raise a string formatting error.
                err = ("Invalid timeout {}. Pass a (connect, read) "
                       "timeout tuple, or a single float to set "
                       "both timeouts to the same value".format(timeout))
                raise ValueError(err)
        elif isinstance(timeout, TimeoutSauce):
            pass
        else:
            timeout = TimeoutSauce(connect=timeout, read=timeout)
    
        try:
            if not chunked:
>               resp = conn.urlopen(
                    method=request.method,
                    url=url,
                    body=request.body,
                    headers=request.headers,
                    redirect=False,
                    assert_same_host=False,
                    preload_content=False,
                    decode_content=False,
                    retries=self.max_retries,
                    timeout=timeout
                )

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/adapters.py:439: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754ad6efa0>
method = 'POST'
url = '/api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf'
body = b'{"query": {"query_string": {"fields": ["*mimetype.name"], "query": "\\"[\'\\"*jp2* OR *vnd.ome.xml* OR *jpx*\\"\']\\""}}}'
headers = {'User-Agent': 'python-requests/2.25.1', 'Accept-Encoding': 'gzip, deflate', 'Accept': '*/*', 'Connection': 'keep-alive', 'Content-Length': '115', 'Content-Type': 'application/json'}
retries = Retry(total=0, connect=None, read=False, redirect=None, status=None)
redirect = False, assert_same_host = False
timeout = Timeout(connect=None, read=None, total=None), pool_timeout = None
release_conn = False, chunked = False, body_pos = None
response_kw = {'decode_content': False, 'preload_content': False}
parsed_url = Url(scheme=None, auth=None, host=None, port=None, path='/api/1/elastic/SPARC_PortalDatasets_dev/_search', query='api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf', fragment=None)
destination_scheme = None, conn = None, release_this_conn = True
http_tunnel_required = False, err = None, clean_exit = False

    def urlopen(
        self,
        method,
        url,
        body=None,
        headers=None,
        retries=None,
        redirect=True,
        assert_same_host=True,
        timeout=_Default,
        pool_timeout=None,
        release_conn=None,
        chunked=False,
        body_pos=None,
        **response_kw
    ):
        """
        Get a connection from the pool and perform an HTTP request. This is the
        lowest level call for making a request, so you'll need to specify all
        the raw details.
    
        .. note::
    
           More commonly, it's appropriate to use a convenience method provided
           by :class:`.RequestMethods`, such as :meth:`request`.
    
        .. note::
    
           `release_conn` will only behave as expected if
           `preload_content=False` because we want to make
           `preload_content=False` the default behaviour someday soon without
           breaking backwards compatibility.
    
        :param method:
            HTTP request method (such as GET, POST, PUT, etc.)
    
        :param url:
            The URL to perform the request on.
    
        :param body:
            Data to send in the request body, either :class:`str`, :class:`bytes`,
            an iterable of :class:`str`/:class:`bytes`, or a file-like object.
    
        :param headers:
            Dictionary of custom headers to send, such as User-Agent,
            If-None-Match, etc. If None, pool headers are used. If provided,
            these headers completely replace any pool-specific headers.
    
        :param retries:
            Configure the number of retries to allow before raising a
            :class:`~urllib3.exceptions.MaxRetryError` exception.
    
            Pass ``None`` to retry until you receive a response. Pass a
            :class:`~urllib3.util.retry.Retry` object for fine-grained control
            over different types of retries.
            Pass an integer number to retry connection errors that many times,
            but no other types of errors. Pass zero to never retry.
    
            If ``False``, then retries are disabled and any exception is raised
            immediately. Also, instead of raising a MaxRetryError on redirects,
            the redirect response will be returned.
    
        :type retries: :class:`~urllib3.util.retry.Retry`, False, or an int.
    
        :param redirect:
            If True, automatically handle redirects (status codes 301, 302,
            303, 307, 308). Each redirect counts as a retry. Disabling retries
            will disable redirect, too.
    
        :param assert_same_host:
            If ``True``, will make sure that the host of the pool requests is
            consistent else will raise HostChangedError. When ``False``, you can
            use the pool on an HTTP proxy and request foreign hosts.
    
        :param timeout:
            If specified, overrides the default timeout for this one
            request. It may be a float (in seconds) or an instance of
            :class:`urllib3.util.Timeout`.
    
        :param pool_timeout:
            If set and the pool is set to block=True, then this method will
            block for ``pool_timeout`` seconds and raise EmptyPoolError if no
            connection is available within the time period.
    
        :param release_conn:
            If False, then the urlopen call will not release the connection
            back into the pool once a response is received (but will release if
            you read the entire contents of the response such as when
            `preload_content=True`). This is useful if you're not preloading
            the response's content immediately. You will need to call
            ``r.release_conn()`` on the response ``r`` to return the connection
            back into the pool. If None, it takes the value of
            ``response_kw.get('preload_content', True)``.
    
        :param chunked:
            If True, urllib3 will send the body using chunked transfer
            encoding. Otherwise, urllib3 will send the body using the standard
            content-length form. Defaults to False.
    
        :param int body_pos:
            Position to seek to in file-like body in the event of a retry or
            redirect. Typically this won't need to be set because urllib3 will
            auto-populate the value when needed.
    
        :param \\**response_kw:
            Additional parameters are passed to
            :meth:`urllib3.response.HTTPResponse.from_httplib`
        """
    
        parsed_url = parse_url(url)
        destination_scheme = parsed_url.scheme
    
        if headers is None:
            headers = self.headers
    
        if not isinstance(retries, Retry):
            retries = Retry.from_int(retries, redirect=redirect, default=self.retries)
    
        if release_conn is None:
            release_conn = response_kw.get("preload_content", True)
    
        # Check host
        if assert_same_host and not self.is_same_host(url):
            raise HostChangedError(self, url, retries)
    
        # Ensure that the URL we're connecting to is properly encoded
        if url.startswith("/"):
            url = six.ensure_str(_encode_target(url))
        else:
            url = six.ensure_str(parsed_url.url)
    
        conn = None
    
        # Track whether `conn` needs to be released before
        # returning/raising/recursing. Update this variable if necessary, and
        # leave `release_conn` constant throughout the function. That way, if
        # the function recurses, the original value of `release_conn` will be
        # passed down into the recursive call, and its value will be respected.
        #
        # See issue #651 [1] for details.
        #
        # [1] <https://github.com/urllib3/urllib3/issues/651>
        release_this_conn = release_conn
    
        http_tunnel_required = connection_requires_http_tunnel(
            self.proxy, self.proxy_config, destination_scheme
        )
    
        # Merge the proxy headers. Only done when not using HTTP CONNECT. We
        # have to copy the headers dict so we can safely change it without those
        # changes being reflected in anyone else's copy.
        if not http_tunnel_required:
            headers = headers.copy()
            headers.update(self.proxy_headers)
    
        # Must keep the exception bound to a separate variable or else Python 3
        # complains about UnboundLocalError.
        err = None
    
        # Keep track of whether we cleanly exited the except block. This
        # ensures we do proper cleanup in finally.
        clean_exit = False
    
        # Rewind body position, if needed. Record current position
        # for future rewinds in the event of a redirect/retry.
        body_pos = set_file_position(body, body_pos)
    
        try:
            # Request a connection from the queue.
            timeout_obj = self._get_timeout(timeout)
            conn = self._get_conn(timeout=pool_timeout)
    
            conn.timeout = timeout_obj.connect_timeout
    
            is_new_proxy_conn = self.proxy is not None and not getattr(
                conn, "sock", None
            )
            if is_new_proxy_conn and http_tunnel_required:
                self._prepare_proxy(conn)
    
            # Make the request on the httplib connection object.
            httplib_response = self._make_request(
                conn,
                method,
                url,
                timeout=timeout_obj,
                body=body,
                headers=headers,
                chunked=chunked,
            )
    
            # If we're going to release the connection in ``finally:``, then
            # the response doesn't need to know about the connection. Otherwise
            # it will also try to release it and we'll have a double-release
            # mess.
            response_conn = conn if not release_conn else None
    
            # Pass method to Response for length checking
            response_kw["request_method"] = method
    
            # Import httplib's response into our own wrapper object
            response = self.ResponseCls.from_httplib(
                httplib_response,
                pool=self,
                connection=response_conn,
                retries=retries,
                **response_kw
            )
    
            # Everything went great!
            clean_exit = True
    
        except EmptyPoolError:
            # Didn't get a connection from the pool, no need to clean up
            clean_exit = True
            release_this_conn = False
            raise
    
        except (
            TimeoutError,
            HTTPException,
            SocketError,
            ProtocolError,
            BaseSSLError,
            SSLError,
            CertificateError,
        ) as e:
            # Discard the connection for these exceptions. It will be
            # replaced during the next _get_conn() call.
            clean_exit = False
            if isinstance(e, (BaseSSLError, CertificateError)):
                e = SSLError(e)
            elif isinstance(e, (SocketError, NewConnectionError)) and self.proxy:
                e = ProxyError("Cannot connect to proxy.", e)
            elif isinstance(e, (SocketError, HTTPException)):
                e = ProtocolError("Connection aborted.", e)
    
>           retries = retries.increment(
                method, url, error=e, _pool=self, _stacktrace=sys.exc_info()[2]
            )

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py:755: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = Retry(total=0, connect=None, read=False, redirect=None, status=None)
method = 'POST'
url = '/api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf'
response = None
error = NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7f754ad6ebb0>: Failed to establish a new connection: [Errno 110] Connection timed out')
_pool = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754ad6efa0>
_stacktrace = <traceback object at 0x7f754a580fc0>

    def increment(
        self,
        method=None,
        url=None,
        response=None,
        error=None,
        _pool=None,
        _stacktrace=None,
    ):
        """Return a new Retry object with incremented retry counters.
    
        :param response: A response object, or None, if the server did not
            return a response.
        :type response: :class:`~urllib3.response.HTTPResponse`
        :param Exception error: An error encountered during the request, or
            None if the response was received successfully.
    
        :return: A new ``Retry`` object.
        """
        if self.total is False and error:
            # Disabled, indicate to re-raise the error.
            raise six.reraise(type(error), error, _stacktrace)
    
        total = self.total
        if total is not None:
            total -= 1
    
        connect = self.connect
        read = self.read
        redirect = self.redirect
        status_count = self.status
        other = self.other
        cause = "unknown"
        status = None
        redirect_location = None
    
        if error and self._is_connection_error(error):
            # Connect retry?
            if connect is False:
                raise six.reraise(type(error), error, _stacktrace)
            elif connect is not None:
                connect -= 1
    
        elif error and self._is_read_error(error):
            # Read retry?
            if read is False or not self._is_method_retryable(method):
                raise six.reraise(type(error), error, _stacktrace)
            elif read is not None:
                read -= 1
    
        elif error:
            # Other retry?
            if other is not None:
                other -= 1
    
        elif response and response.get_redirect_location():
            # Redirect retry?
            if redirect is not None:
                redirect -= 1
            cause = "too many redirects"
            redirect_location = response.get_redirect_location()
            status = response.status
    
        else:
            # Incrementing because of a server error like a 500 in
            # status_forcelist and the given method is in the allowed_methods
            cause = ResponseError.GENERIC_ERROR
            if response and response.status:
                if status_count is not None:
                    status_count -= 1
                cause = ResponseError.SPECIFIC_ERROR.format(status_code=response.status)
                status = response.status
    
        history = self.history + (
            RequestHistory(method, url, error, status, redirect_location),
        )
    
        new_retry = self.new(
            total=total,
            connect=connect,
            read=read,
            redirect=redirect,
            status=status_count,
            other=other,
            history=history,
        )
    
        if new_retry.is_exhausted():
>           raise MaxRetryError(_pool, url, error or ResponseError(cause))
E           urllib3.exceptions.MaxRetryError: HTTPSConnectionPool(host='scicrunch.org', port=443): Max retries exceeded with url: /api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7f754ad6ebb0>: Failed to establish a new connection: [Errno 110] Connection timed out'))

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/util/retry.py:574: MaxRetryError

During handling of the above exception, another exception occurred:

client = <FlaskClient <Flask 'app.main'>>

    def test_scicrunch_image_search(client):
>       r = client.get('/multiple_dataset_info/using_multiple_mimetype/?q="*jp2*+OR+*vnd.ome.xml*+OR+*jpx*"')

tests/test_scicrunch.py:138: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/werkzeug/test.py:1029: in get
    return self.open(*args, **kw)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/testing.py:222: in open
    return Client.open(
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/werkzeug/test.py:993: in open
    response = self.run_wsgi_app(environ.copy(), buffered=buffered)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/werkzeug/test.py:884: in run_wsgi_app
    rv = run_wsgi_app(self.application, environ, buffered=buffered)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/werkzeug/test.py:1119: in run_wsgi_app
    app_rv = app(environ, start_response)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:2463: in __call__
    return self.wsgi_app(environ, start_response)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:2449: in wsgi_app
    response = self.handle_exception(e)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask_cors/extension.py:161: in wrapped_function
    return cors_after_request(app.make_response(f(*args, **kwargs)))
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1866: in handle_exception
    reraise(exc_type, exc_value, tb)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/_compat.py:39: in reraise
    raise value
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:2446: in wsgi_app
    response = self.full_dispatch_request()
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1951: in full_dispatch_request
    rv = self.handle_user_exception(e)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask_cors/extension.py:161: in wrapped_function
    return cors_after_request(app.make_response(f(*args, **kwargs)))
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1820: in handle_user_exception
    reraise(exc_type, exc_value, tb)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/_compat.py:39: in reraise
    raise value
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1949: in full_dispatch_request
    rv = self.dispatch_request()
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1935: in dispatch_request
    return self.view_functions[rule.endpoint](**req.view_args)
app/main.py:558: in get_file_info_from_mimetype
    return process_results(dataset_search(query))
app/main.py:663: in dataset_search
    response = requests.post(f'{Config.SCI_CRUNCH_HOST}/_search',
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/api.py:119: in post
    return request('post', url, data=data, json=json, **kwargs)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/api.py:61: in request
    return session.request(method=method, url=url, **kwargs)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/sessions.py:542: in request
    resp = self.send(prep, **send_kwargs)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/sessions.py:655: in send
    r = adapter.send(request, **kwargs)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <requests.adapters.HTTPAdapter object at 0x7f754a626610>
request = <PreparedRequest [POST]>, stream = False
timeout = Timeout(connect=None, read=None, total=None), verify = True
cert = None, proxies = OrderedDict()

    def send(self, request, stream=False, timeout=None, verify=True, cert=None, proxies=None):
        """Sends PreparedRequest object. Returns Response object.
    
        :param request: The :class:`PreparedRequest <PreparedRequest>` being sent.
        :param stream: (optional) Whether to stream the request content.
        :param timeout: (optional) How long to wait for the server to send
            data before giving up, as a float, or a :ref:`(connect timeout,
            read timeout) <timeouts>` tuple.
        :type timeout: float or tuple or urllib3 Timeout object
        :param verify: (optional) Either a boolean, in which case it controls whether
            we verify the server's TLS certificate, or a string, in which case it
            must be a path to a CA bundle to use
        :param cert: (optional) Any user-provided SSL certificate to be trusted.
        :param proxies: (optional) The proxies dictionary to apply to the request.
        :rtype: requests.Response
        """
    
        try:
            conn = self.get_connection(request.url, proxies)
        except LocationValueError as e:
            raise InvalidURL(e, request=request)
    
        self.cert_verify(conn, request.url, verify, cert)
        url = self.request_url(request, proxies)
        self.add_headers(request, stream=stream, timeout=timeout, verify=verify, cert=cert, proxies=proxies)
    
        chunked = not (request.body is None or 'Content-Length' in request.headers)
    
        if isinstance(timeout, tuple):
            try:
                connect, read = timeout
                timeout = TimeoutSauce(connect=connect, read=read)
            except ValueError as e:
                # this may raise a string formatting error.
                err = ("Invalid timeout {}. Pass a (connect, read) "
                       "timeout tuple, or a single float to set "
                       "both timeouts to the same value".format(timeout))
                raise ValueError(err)
        elif isinstance(timeout, TimeoutSauce):
            pass
        else:
            timeout = TimeoutSauce(connect=timeout, read=timeout)
    
        try:
            if not chunked:
                resp = conn.urlopen(
                    method=request.method,
                    url=url,
                    body=request.body,
                    headers=request.headers,
                    redirect=False,
                    assert_same_host=False,
                    preload_content=False,
                    decode_content=False,
                    retries=self.max_retries,
                    timeout=timeout
                )
    
            # Send the request.
            else:
                if hasattr(conn, 'proxy_pool'):
                    conn = conn.proxy_pool
    
                low_conn = conn._get_conn(timeout=DEFAULT_POOL_TIMEOUT)
    
                try:
                    low_conn.putrequest(request.method,
                                        url,
                                        skip_accept_encoding=True)
    
                    for header, value in request.headers.items():
                        low_conn.putheader(header, value)
    
                    low_conn.endheaders()
    
                    for i in request.body:
                        low_conn.send(hex(len(i))[2:].encode('utf-8'))
                        low_conn.send(b'\r\n')
                        low_conn.send(i)
                        low_conn.send(b'\r\n')
                    low_conn.send(b'0\r\n\r\n')
    
                    # Receive the response from the server
                    try:
                        # For Python 2.7, use buffering of HTTP responses
                        r = low_conn.getresponse(buffering=True)
                    except TypeError:
                        # For compatibility with Python 3.3+
                        r = low_conn.getresponse()
    
                    resp = HTTPResponse.from_httplib(
                        r,
                        pool=conn,
                        connection=low_conn,
                        preload_content=False,
                        decode_content=False
                    )
                except:
                    # If we hit any problems here, clean up the connection.
                    # Then, reraise so that we can handle the actual exception.
                    low_conn.close()
                    raise
    
        except (ProtocolError, socket.error) as err:
            raise ConnectionError(err, request=request)
    
        except MaxRetryError as e:
            if isinstance(e.reason, ConnectTimeoutError):
                # TODO: Remove this in 3.0.0: see #2811
                if not isinstance(e.reason, NewConnectionError):
                    raise ConnectTimeout(e, request=request)
    
            if isinstance(e.reason, ResponseError):
                raise RetryError(e, request=request)
    
            if isinstance(e.reason, _ProxyError):
                raise ProxyError(e, request=request)
    
            if isinstance(e.reason, _SSLError):
                # This branch is for urllib3 v1.22 and later.
                raise SSLError(e, request=request)
    
>           raise ConnectionError(e, request=request)
E           requests.exceptions.ConnectionError: HTTPSConnectionPool(host='scicrunch.org', port=443): Max retries exceeded with url: /api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7f754ad6ebb0>: Failed to establish a new connection: [Errno 110] Connection timed out'))

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/adapters.py:516: ConnectionError
_________________________ test_scicrunch_boolean_logic _________________________

self = <urllib3.connection.HTTPSConnection object at 0x7f754a4d0f40>

    def _new_conn(self):
        """Establish a socket connection and set nodelay settings on it.
    
        :return: New socket connection.
        """
        extra_kw = {}
        if self.source_address:
            extra_kw["source_address"] = self.source_address
    
        if self.socket_options:
            extra_kw["socket_options"] = self.socket_options
    
        try:
>           conn = connection.create_connection(
                (self._dns_host, self.port), self.timeout, **extra_kw
            )

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connection.py:169: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

address = ('scicrunch.org', 443), timeout = None, source_address = None
socket_options = [(6, 1, 1)]

    def create_connection(
        address,
        timeout=socket._GLOBAL_DEFAULT_TIMEOUT,
        source_address=None,
        socket_options=None,
    ):
        """Connect to *address* and return the socket object.
    
        Convenience function.  Connect to *address* (a 2-tuple ``(host,
        port)``) and return the socket object.  Passing the optional
        *timeout* parameter will set the timeout on the socket instance
        before attempting to connect.  If no *timeout* is supplied, the
        global default timeout setting returned by :func:`socket.getdefaulttimeout`
        is used.  If *source_address* is set it must be a tuple of (host, port)
        for the socket to bind as a source address before making the connection.
        An host of '' or port 0 tells the OS to use the default.
        """
    
        host, port = address
        if host.startswith("["):
            host = host.strip("[]")
        err = None
    
        # Using the value from allowed_gai_family() in the context of getaddrinfo lets
        # us select whether to work with IPv4 DNS records, IPv6 records, or both.
        # The original create_connection function always returns all records.
        family = allowed_gai_family()
    
        try:
            host.encode("idna")
        except UnicodeError:
            return six.raise_from(
                LocationParseError(u"'%s', label empty or too long" % host), None
            )
    
        for res in socket.getaddrinfo(host, port, family, socket.SOCK_STREAM):
            af, socktype, proto, canonname, sa = res
            sock = None
            try:
                sock = socket.socket(af, socktype, proto)
    
                # If provided, set socket level options before connecting.
                _set_socket_options(sock, socket_options)
    
                if timeout is not socket._GLOBAL_DEFAULT_TIMEOUT:
                    sock.settimeout(timeout)
                if source_address:
                    sock.bind(source_address)
                sock.connect(sa)
                return sock
    
            except socket.error as e:
                err = e
                if sock is not None:
                    sock.close()
                    sock = None
    
        if err is not None:
>           raise err

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/util/connection.py:96: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

address = ('scicrunch.org', 443), timeout = None, source_address = None
socket_options = [(6, 1, 1)]

    def create_connection(
        address,
        timeout=socket._GLOBAL_DEFAULT_TIMEOUT,
        source_address=None,
        socket_options=None,
    ):
        """Connect to *address* and return the socket object.
    
        Convenience function.  Connect to *address* (a 2-tuple ``(host,
        port)``) and return the socket object.  Passing the optional
        *timeout* parameter will set the timeout on the socket instance
        before attempting to connect.  If no *timeout* is supplied, the
        global default timeout setting returned by :func:`socket.getdefaulttimeout`
        is used.  If *source_address* is set it must be a tuple of (host, port)
        for the socket to bind as a source address before making the connection.
        An host of '' or port 0 tells the OS to use the default.
        """
    
        host, port = address
        if host.startswith("["):
            host = host.strip("[]")
        err = None
    
        # Using the value from allowed_gai_family() in the context of getaddrinfo lets
        # us select whether to work with IPv4 DNS records, IPv6 records, or both.
        # The original create_connection function always returns all records.
        family = allowed_gai_family()
    
        try:
            host.encode("idna")
        except UnicodeError:
            return six.raise_from(
                LocationParseError(u"'%s', label empty or too long" % host), None
            )
    
        for res in socket.getaddrinfo(host, port, family, socket.SOCK_STREAM):
            af, socktype, proto, canonname, sa = res
            sock = None
            try:
                sock = socket.socket(af, socktype, proto)
    
                # If provided, set socket level options before connecting.
                _set_socket_options(sock, socket_options)
    
                if timeout is not socket._GLOBAL_DEFAULT_TIMEOUT:
                    sock.settimeout(timeout)
                if source_address:
                    sock.bind(source_address)
>               sock.connect(sa)
E               TimeoutError: [Errno 110] Connection timed out

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/util/connection.py:86: TimeoutError

During handling of the above exception, another exception occurred:

self = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754a442280>
method = 'POST'
url = '/api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf'
body = b'{"size": 10, "from": 0, "query": {"query_string": {"query": "(attributes.subject.sex.value:((male) OR (female)))"}}}'
headers = {'User-Agent': 'python-requests/2.25.1', 'Accept-Encoding': 'gzip, deflate', 'Accept': '*/*', 'Connection': 'keep-alive', 'Content-Length': '116', 'Content-Type': 'application/json'}
retries = Retry(total=0, connect=None, read=False, redirect=None, status=None)
redirect = False, assert_same_host = False
timeout = Timeout(connect=None, read=None, total=None), pool_timeout = None
release_conn = False, chunked = False, body_pos = None
response_kw = {'decode_content': False, 'preload_content': False}
parsed_url = Url(scheme=None, auth=None, host=None, port=None, path='/api/1/elastic/SPARC_PortalDatasets_dev/_search', query='api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf', fragment=None)
destination_scheme = None, conn = None, release_this_conn = True
http_tunnel_required = False, err = None, clean_exit = False

    def urlopen(
        self,
        method,
        url,
        body=None,
        headers=None,
        retries=None,
        redirect=True,
        assert_same_host=True,
        timeout=_Default,
        pool_timeout=None,
        release_conn=None,
        chunked=False,
        body_pos=None,
        **response_kw
    ):
        """
        Get a connection from the pool and perform an HTTP request. This is the
        lowest level call for making a request, so you'll need to specify all
        the raw details.
    
        .. note::
    
           More commonly, it's appropriate to use a convenience method provided
           by :class:`.RequestMethods`, such as :meth:`request`.
    
        .. note::
    
           `release_conn` will only behave as expected if
           `preload_content=False` because we want to make
           `preload_content=False` the default behaviour someday soon without
           breaking backwards compatibility.
    
        :param method:
            HTTP request method (such as GET, POST, PUT, etc.)
    
        :param url:
            The URL to perform the request on.
    
        :param body:
            Data to send in the request body, either :class:`str`, :class:`bytes`,
            an iterable of :class:`str`/:class:`bytes`, or a file-like object.
    
        :param headers:
            Dictionary of custom headers to send, such as User-Agent,
            If-None-Match, etc. If None, pool headers are used. If provided,
            these headers completely replace any pool-specific headers.
    
        :param retries:
            Configure the number of retries to allow before raising a
            :class:`~urllib3.exceptions.MaxRetryError` exception.
    
            Pass ``None`` to retry until you receive a response. Pass a
            :class:`~urllib3.util.retry.Retry` object for fine-grained control
            over different types of retries.
            Pass an integer number to retry connection errors that many times,
            but no other types of errors. Pass zero to never retry.
    
            If ``False``, then retries are disabled and any exception is raised
            immediately. Also, instead of raising a MaxRetryError on redirects,
            the redirect response will be returned.
    
        :type retries: :class:`~urllib3.util.retry.Retry`, False, or an int.
    
        :param redirect:
            If True, automatically handle redirects (status codes 301, 302,
            303, 307, 308). Each redirect counts as a retry. Disabling retries
            will disable redirect, too.
    
        :param assert_same_host:
            If ``True``, will make sure that the host of the pool requests is
            consistent else will raise HostChangedError. When ``False``, you can
            use the pool on an HTTP proxy and request foreign hosts.
    
        :param timeout:
            If specified, overrides the default timeout for this one
            request. It may be a float (in seconds) or an instance of
            :class:`urllib3.util.Timeout`.
    
        :param pool_timeout:
            If set and the pool is set to block=True, then this method will
            block for ``pool_timeout`` seconds and raise EmptyPoolError if no
            connection is available within the time period.
    
        :param release_conn:
            If False, then the urlopen call will not release the connection
            back into the pool once a response is received (but will release if
            you read the entire contents of the response such as when
            `preload_content=True`). This is useful if you're not preloading
            the response's content immediately. You will need to call
            ``r.release_conn()`` on the response ``r`` to return the connection
            back into the pool. If None, it takes the value of
            ``response_kw.get('preload_content', True)``.
    
        :param chunked:
            If True, urllib3 will send the body using chunked transfer
            encoding. Otherwise, urllib3 will send the body using the standard
            content-length form. Defaults to False.
    
        :param int body_pos:
            Position to seek to in file-like body in the event of a retry or
            redirect. Typically this won't need to be set because urllib3 will
            auto-populate the value when needed.
    
        :param \\**response_kw:
            Additional parameters are passed to
            :meth:`urllib3.response.HTTPResponse.from_httplib`
        """
    
        parsed_url = parse_url(url)
        destination_scheme = parsed_url.scheme
    
        if headers is None:
            headers = self.headers
    
        if not isinstance(retries, Retry):
            retries = Retry.from_int(retries, redirect=redirect, default=self.retries)
    
        if release_conn is None:
            release_conn = response_kw.get("preload_content", True)
    
        # Check host
        if assert_same_host and not self.is_same_host(url):
            raise HostChangedError(self, url, retries)
    
        # Ensure that the URL we're connecting to is properly encoded
        if url.startswith("/"):
            url = six.ensure_str(_encode_target(url))
        else:
            url = six.ensure_str(parsed_url.url)
    
        conn = None
    
        # Track whether `conn` needs to be released before
        # returning/raising/recursing. Update this variable if necessary, and
        # leave `release_conn` constant throughout the function. That way, if
        # the function recurses, the original value of `release_conn` will be
        # passed down into the recursive call, and its value will be respected.
        #
        # See issue #651 [1] for details.
        #
        # [1] <https://github.com/urllib3/urllib3/issues/651>
        release_this_conn = release_conn
    
        http_tunnel_required = connection_requires_http_tunnel(
            self.proxy, self.proxy_config, destination_scheme
        )
    
        # Merge the proxy headers. Only done when not using HTTP CONNECT. We
        # have to copy the headers dict so we can safely change it without those
        # changes being reflected in anyone else's copy.
        if not http_tunnel_required:
            headers = headers.copy()
            headers.update(self.proxy_headers)
    
        # Must keep the exception bound to a separate variable or else Python 3
        # complains about UnboundLocalError.
        err = None
    
        # Keep track of whether we cleanly exited the except block. This
        # ensures we do proper cleanup in finally.
        clean_exit = False
    
        # Rewind body position, if needed. Record current position
        # for future rewinds in the event of a redirect/retry.
        body_pos = set_file_position(body, body_pos)
    
        try:
            # Request a connection from the queue.
            timeout_obj = self._get_timeout(timeout)
            conn = self._get_conn(timeout=pool_timeout)
    
            conn.timeout = timeout_obj.connect_timeout
    
            is_new_proxy_conn = self.proxy is not None and not getattr(
                conn, "sock", None
            )
            if is_new_proxy_conn and http_tunnel_required:
                self._prepare_proxy(conn)
    
            # Make the request on the httplib connection object.
>           httplib_response = self._make_request(
                conn,
                method,
                url,
                timeout=timeout_obj,
                body=body,
                headers=headers,
                chunked=chunked,
            )

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py:699: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754a442280>
conn = <urllib3.connection.HTTPSConnection object at 0x7f754a4d0f40>
method = 'POST'
url = '/api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf'
timeout = Timeout(connect=None, read=None, total=None), chunked = False
httplib_request_kw = {'body': b'{"size": 10, "from": 0, "query": {"query_string": {"query": "(attributes.subject.sex.value:((male) OR (fema...p, deflate', 'Accept': '*/*', 'Connection': 'keep-alive', 'Content-Length': '116', 'Content-Type': 'application/json'}}
timeout_obj = Timeout(connect=None, read=None, total=None)

    def _make_request(
        self, conn, method, url, timeout=_Default, chunked=False, **httplib_request_kw
    ):
        """
        Perform a request on a given urllib connection object taken from our
        pool.
    
        :param conn:
            a connection from one of our connection pools
    
        :param timeout:
            Socket timeout in seconds for the request. This can be a
            float or integer, which will set the same timeout value for
            the socket connect and the socket read, or an instance of
            :class:`urllib3.util.Timeout`, which gives you more fine-grained
            control over your timeouts.
        """
        self.num_requests += 1
    
        timeout_obj = self._get_timeout(timeout)
        timeout_obj.start_connect()
        conn.timeout = timeout_obj.connect_timeout
    
        # Trigger any extra validation we need to do.
        try:
>           self._validate_conn(conn)

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py:382: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754a442280>
conn = <urllib3.connection.HTTPSConnection object at 0x7f754a4d0f40>

    def _validate_conn(self, conn):
        """
        Called right before a request is made, after the socket is created.
        """
        super(HTTPSConnectionPool, self)._validate_conn(conn)
    
        # Force connect early to allow us to validate the connection.
        if not getattr(conn, "sock", None):  # AppEngine might not have  `.sock`
>           conn.connect()

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py:1010: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connection.HTTPSConnection object at 0x7f754a4d0f40>

    def connect(self):
        # Add certificate verification
>       conn = self._new_conn()

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connection.py:353: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connection.HTTPSConnection object at 0x7f754a4d0f40>

    def _new_conn(self):
        """Establish a socket connection and set nodelay settings on it.
    
        :return: New socket connection.
        """
        extra_kw = {}
        if self.source_address:
            extra_kw["source_address"] = self.source_address
    
        if self.socket_options:
            extra_kw["socket_options"] = self.socket_options
    
        try:
            conn = connection.create_connection(
                (self._dns_host, self.port), self.timeout, **extra_kw
            )
    
        except SocketTimeout:
            raise ConnectTimeoutError(
                self,
                "Connection to %s timed out. (connect timeout=%s)"
                % (self.host, self.timeout),
            )
    
        except SocketError as e:
>           raise NewConnectionError(
                self, "Failed to establish a new connection: %s" % e
            )
E           urllib3.exceptions.NewConnectionError: <urllib3.connection.HTTPSConnection object at 0x7f754a4d0f40>: Failed to establish a new connection: [Errno 110] Connection timed out

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connection.py:181: NewConnectionError

During handling of the above exception, another exception occurred:

self = <requests.adapters.HTTPAdapter object at 0x7f754a4424f0>
request = <PreparedRequest [POST]>, stream = False
timeout = Timeout(connect=None, read=None, total=None), verify = True
cert = None, proxies = OrderedDict()

    def send(self, request, stream=False, timeout=None, verify=True, cert=None, proxies=None):
        """Sends PreparedRequest object. Returns Response object.
    
        :param request: The :class:`PreparedRequest <PreparedRequest>` being sent.
        :param stream: (optional) Whether to stream the request content.
        :param timeout: (optional) How long to wait for the server to send
            data before giving up, as a float, or a :ref:`(connect timeout,
            read timeout) <timeouts>` tuple.
        :type timeout: float or tuple or urllib3 Timeout object
        :param verify: (optional) Either a boolean, in which case it controls whether
            we verify the server's TLS certificate, or a string, in which case it
            must be a path to a CA bundle to use
        :param cert: (optional) Any user-provided SSL certificate to be trusted.
        :param proxies: (optional) The proxies dictionary to apply to the request.
        :rtype: requests.Response
        """
    
        try:
            conn = self.get_connection(request.url, proxies)
        except LocationValueError as e:
            raise InvalidURL(e, request=request)
    
        self.cert_verify(conn, request.url, verify, cert)
        url = self.request_url(request, proxies)
        self.add_headers(request, stream=stream, timeout=timeout, verify=verify, cert=cert, proxies=proxies)
    
        chunked = not (request.body is None or 'Content-Length' in request.headers)
    
        if isinstance(timeout, tuple):
            try:
                connect, read = timeout
                timeout = TimeoutSauce(connect=connect, read=read)
            except ValueError as e:
                # this may raise a string formatting error.
                err = ("Invalid timeout {}. Pass a (connect, read) "
                       "timeout tuple, or a single float to set "
                       "both timeouts to the same value".format(timeout))
                raise ValueError(err)
        elif isinstance(timeout, TimeoutSauce):
            pass
        else:
            timeout = TimeoutSauce(connect=timeout, read=timeout)
    
        try:
            if not chunked:
>               resp = conn.urlopen(
                    method=request.method,
                    url=url,
                    body=request.body,
                    headers=request.headers,
                    redirect=False,
                    assert_same_host=False,
                    preload_content=False,
                    decode_content=False,
                    retries=self.max_retries,
                    timeout=timeout
                )

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/adapters.py:439: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754a442280>
method = 'POST'
url = '/api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf'
body = b'{"size": 10, "from": 0, "query": {"query_string": {"query": "(attributes.subject.sex.value:((male) OR (female)))"}}}'
headers = {'User-Agent': 'python-requests/2.25.1', 'Accept-Encoding': 'gzip, deflate', 'Accept': '*/*', 'Connection': 'keep-alive', 'Content-Length': '116', 'Content-Type': 'application/json'}
retries = Retry(total=0, connect=None, read=False, redirect=None, status=None)
redirect = False, assert_same_host = False
timeout = Timeout(connect=None, read=None, total=None), pool_timeout = None
release_conn = False, chunked = False, body_pos = None
response_kw = {'decode_content': False, 'preload_content': False}
parsed_url = Url(scheme=None, auth=None, host=None, port=None, path='/api/1/elastic/SPARC_PortalDatasets_dev/_search', query='api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf', fragment=None)
destination_scheme = None, conn = None, release_this_conn = True
http_tunnel_required = False, err = None, clean_exit = False

    def urlopen(
        self,
        method,
        url,
        body=None,
        headers=None,
        retries=None,
        redirect=True,
        assert_same_host=True,
        timeout=_Default,
        pool_timeout=None,
        release_conn=None,
        chunked=False,
        body_pos=None,
        **response_kw
    ):
        """
        Get a connection from the pool and perform an HTTP request. This is the
        lowest level call for making a request, so you'll need to specify all
        the raw details.
    
        .. note::
    
           More commonly, it's appropriate to use a convenience method provided
           by :class:`.RequestMethods`, such as :meth:`request`.
    
        .. note::
    
           `release_conn` will only behave as expected if
           `preload_content=False` because we want to make
           `preload_content=False` the default behaviour someday soon without
           breaking backwards compatibility.
    
        :param method:
            HTTP request method (such as GET, POST, PUT, etc.)
    
        :param url:
            The URL to perform the request on.
    
        :param body:
            Data to send in the request body, either :class:`str`, :class:`bytes`,
            an iterable of :class:`str`/:class:`bytes`, or a file-like object.
    
        :param headers:
            Dictionary of custom headers to send, such as User-Agent,
            If-None-Match, etc. If None, pool headers are used. If provided,
            these headers completely replace any pool-specific headers.
    
        :param retries:
            Configure the number of retries to allow before raising a
            :class:`~urllib3.exceptions.MaxRetryError` exception.
    
            Pass ``None`` to retry until you receive a response. Pass a
            :class:`~urllib3.util.retry.Retry` object for fine-grained control
            over different types of retries.
            Pass an integer number to retry connection errors that many times,
            but no other types of errors. Pass zero to never retry.
    
            If ``False``, then retries are disabled and any exception is raised
            immediately. Also, instead of raising a MaxRetryError on redirects,
            the redirect response will be returned.
    
        :type retries: :class:`~urllib3.util.retry.Retry`, False, or an int.
    
        :param redirect:
            If True, automatically handle redirects (status codes 301, 302,
            303, 307, 308). Each redirect counts as a retry. Disabling retries
            will disable redirect, too.
    
        :param assert_same_host:
            If ``True``, will make sure that the host of the pool requests is
            consistent else will raise HostChangedError. When ``False``, you can
            use the pool on an HTTP proxy and request foreign hosts.
    
        :param timeout:
            If specified, overrides the default timeout for this one
            request. It may be a float (in seconds) or an instance of
            :class:`urllib3.util.Timeout`.
    
        :param pool_timeout:
            If set and the pool is set to block=True, then this method will
            block for ``pool_timeout`` seconds and raise EmptyPoolError if no
            connection is available within the time period.
    
        :param release_conn:
            If False, then the urlopen call will not release the connection
            back into the pool once a response is received (but will release if
            you read the entire contents of the response such as when
            `preload_content=True`). This is useful if you're not preloading
            the response's content immediately. You will need to call
            ``r.release_conn()`` on the response ``r`` to return the connection
            back into the pool. If None, it takes the value of
            ``response_kw.get('preload_content', True)``.
    
        :param chunked:
            If True, urllib3 will send the body using chunked transfer
            encoding. Otherwise, urllib3 will send the body using the standard
            content-length form. Defaults to False.
    
        :param int body_pos:
            Position to seek to in file-like body in the event of a retry or
            redirect. Typically this won't need to be set because urllib3 will
            auto-populate the value when needed.
    
        :param \\**response_kw:
            Additional parameters are passed to
            :meth:`urllib3.response.HTTPResponse.from_httplib`
        """
    
        parsed_url = parse_url(url)
        destination_scheme = parsed_url.scheme
    
        if headers is None:
            headers = self.headers
    
        if not isinstance(retries, Retry):
            retries = Retry.from_int(retries, redirect=redirect, default=self.retries)
    
        if release_conn is None:
            release_conn = response_kw.get("preload_content", True)
    
        # Check host
        if assert_same_host and not self.is_same_host(url):
            raise HostChangedError(self, url, retries)
    
        # Ensure that the URL we're connecting to is properly encoded
        if url.startswith("/"):
            url = six.ensure_str(_encode_target(url))
        else:
            url = six.ensure_str(parsed_url.url)
    
        conn = None
    
        # Track whether `conn` needs to be released before
        # returning/raising/recursing. Update this variable if necessary, and
        # leave `release_conn` constant throughout the function. That way, if
        # the function recurses, the original value of `release_conn` will be
        # passed down into the recursive call, and its value will be respected.
        #
        # See issue #651 [1] for details.
        #
        # [1] <https://github.com/urllib3/urllib3/issues/651>
        release_this_conn = release_conn
    
        http_tunnel_required = connection_requires_http_tunnel(
            self.proxy, self.proxy_config, destination_scheme
        )
    
        # Merge the proxy headers. Only done when not using HTTP CONNECT. We
        # have to copy the headers dict so we can safely change it without those
        # changes being reflected in anyone else's copy.
        if not http_tunnel_required:
            headers = headers.copy()
            headers.update(self.proxy_headers)
    
        # Must keep the exception bound to a separate variable or else Python 3
        # complains about UnboundLocalError.
        err = None
    
        # Keep track of whether we cleanly exited the except block. This
        # ensures we do proper cleanup in finally.
        clean_exit = False
    
        # Rewind body position, if needed. Record current position
        # for future rewinds in the event of a redirect/retry.
        body_pos = set_file_position(body, body_pos)
    
        try:
            # Request a connection from the queue.
            timeout_obj = self._get_timeout(timeout)
            conn = self._get_conn(timeout=pool_timeout)
    
            conn.timeout = timeout_obj.connect_timeout
    
            is_new_proxy_conn = self.proxy is not None and not getattr(
                conn, "sock", None
            )
            if is_new_proxy_conn and http_tunnel_required:
                self._prepare_proxy(conn)
    
            # Make the request on the httplib connection object.
            httplib_response = self._make_request(
                conn,
                method,
                url,
                timeout=timeout_obj,
                body=body,
                headers=headers,
                chunked=chunked,
            )
    
            # If we're going to release the connection in ``finally:``, then
            # the response doesn't need to know about the connection. Otherwise
            # it will also try to release it and we'll have a double-release
            # mess.
            response_conn = conn if not release_conn else None
    
            # Pass method to Response for length checking
            response_kw["request_method"] = method
    
            # Import httplib's response into our own wrapper object
            response = self.ResponseCls.from_httplib(
                httplib_response,
                pool=self,
                connection=response_conn,
                retries=retries,
                **response_kw
            )
    
            # Everything went great!
            clean_exit = True
    
        except EmptyPoolError:
            # Didn't get a connection from the pool, no need to clean up
            clean_exit = True
            release_this_conn = False
            raise
    
        except (
            TimeoutError,
            HTTPException,
            SocketError,
            ProtocolError,
            BaseSSLError,
            SSLError,
            CertificateError,
        ) as e:
            # Discard the connection for these exceptions. It will be
            # replaced during the next _get_conn() call.
            clean_exit = False
            if isinstance(e, (BaseSSLError, CertificateError)):
                e = SSLError(e)
            elif isinstance(e, (SocketError, NewConnectionError)) and self.proxy:
                e = ProxyError("Cannot connect to proxy.", e)
            elif isinstance(e, (SocketError, HTTPException)):
                e = ProtocolError("Connection aborted.", e)
    
>           retries = retries.increment(
                method, url, error=e, _pool=self, _stacktrace=sys.exc_info()[2]
            )

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py:755: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = Retry(total=0, connect=None, read=False, redirect=None, status=None)
method = 'POST'
url = '/api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf'
response = None
error = NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7f754a4d0f40>: Failed to establish a new connection: [Errno 110] Connection timed out')
_pool = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754a442280>
_stacktrace = <traceback object at 0x7f754a448980>

    def increment(
        self,
        method=None,
        url=None,
        response=None,
        error=None,
        _pool=None,
        _stacktrace=None,
    ):
        """Return a new Retry object with incremented retry counters.
    
        :param response: A response object, or None, if the server did not
            return a response.
        :type response: :class:`~urllib3.response.HTTPResponse`
        :param Exception error: An error encountered during the request, or
            None if the response was received successfully.
    
        :return: A new ``Retry`` object.
        """
        if self.total is False and error:
            # Disabled, indicate to re-raise the error.
            raise six.reraise(type(error), error, _stacktrace)
    
        total = self.total
        if total is not None:
            total -= 1
    
        connect = self.connect
        read = self.read
        redirect = self.redirect
        status_count = self.status
        other = self.other
        cause = "unknown"
        status = None
        redirect_location = None
    
        if error and self._is_connection_error(error):
            # Connect retry?
            if connect is False:
                raise six.reraise(type(error), error, _stacktrace)
            elif connect is not None:
                connect -= 1
    
        elif error and self._is_read_error(error):
            # Read retry?
            if read is False or not self._is_method_retryable(method):
                raise six.reraise(type(error), error, _stacktrace)
            elif read is not None:
                read -= 1
    
        elif error:
            # Other retry?
            if other is not None:
                other -= 1
    
        elif response and response.get_redirect_location():
            # Redirect retry?
            if redirect is not None:
                redirect -= 1
            cause = "too many redirects"
            redirect_location = response.get_redirect_location()
            status = response.status
    
        else:
            # Incrementing because of a server error like a 500 in
            # status_forcelist and the given method is in the allowed_methods
            cause = ResponseError.GENERIC_ERROR
            if response and response.status:
                if status_count is not None:
                    status_count -= 1
                cause = ResponseError.SPECIFIC_ERROR.format(status_code=response.status)
                status = response.status
    
        history = self.history + (
            RequestHistory(method, url, error, status, redirect_location),
        )
    
        new_retry = self.new(
            total=total,
            connect=connect,
            read=read,
            redirect=redirect,
            status=status_count,
            other=other,
            history=history,
        )
    
        if new_retry.is_exhausted():
>           raise MaxRetryError(_pool, url, error or ResponseError(cause))
E           urllib3.exceptions.MaxRetryError: HTTPSConnectionPool(host='scicrunch.org', port=443): Max retries exceeded with url: /api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7f754a4d0f40>: Failed to establish a new connection: [Errno 110] Connection timed out'))

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/util/retry.py:574: MaxRetryError

During handling of the above exception, another exception occurred:

client = <FlaskClient <Flask 'app.main'>>

    def test_scicrunch_boolean_logic(client):
>       r = client.get('/filter-search/?facet=All+Species&term=species&facet=male&term=gender&facet=female&term=gender')

tests/test_scicrunch.py:142: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/werkzeug/test.py:1029: in get
    return self.open(*args, **kw)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/testing.py:222: in open
    return Client.open(
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/werkzeug/test.py:993: in open
    response = self.run_wsgi_app(environ.copy(), buffered=buffered)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/werkzeug/test.py:884: in run_wsgi_app
    rv = run_wsgi_app(self.application, environ, buffered=buffered)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/werkzeug/test.py:1119: in run_wsgi_app
    app_rv = app(environ, start_response)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:2463: in __call__
    return self.wsgi_app(environ, start_response)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:2449: in wsgi_app
    response = self.handle_exception(e)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask_cors/extension.py:161: in wrapped_function
    return cors_after_request(app.make_response(f(*args, **kwargs)))
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1866: in handle_exception
    reraise(exc_type, exc_value, tb)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/_compat.py:39: in reraise
    raise value
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:2446: in wsgi_app
    response = self.full_dispatch_request()
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1951: in full_dispatch_request
    rv = self.handle_user_exception(e)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask_cors/extension.py:161: in wrapped_function
    return cors_after_request(app.make_response(f(*args, **kwargs)))
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1820: in handle_user_exception
    reraise(exc_type, exc_value, tb)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/_compat.py:39: in reraise
    raise value
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1949: in full_dispatch_request
    rv = self.dispatch_request()
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1935: in dispatch_request
    return self.view_functions[rule.endpoint](**req.view_args)
app/main.py:707: in filter_search
    response = requests.post(
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/api.py:119: in post
    return request('post', url, data=data, json=json, **kwargs)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/api.py:61: in request
    return session.request(method=method, url=url, **kwargs)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/sessions.py:542: in request
    resp = self.send(prep, **send_kwargs)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/sessions.py:655: in send
    r = adapter.send(request, **kwargs)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <requests.adapters.HTTPAdapter object at 0x7f754a4424f0>
request = <PreparedRequest [POST]>, stream = False
timeout = Timeout(connect=None, read=None, total=None), verify = True
cert = None, proxies = OrderedDict()

    def send(self, request, stream=False, timeout=None, verify=True, cert=None, proxies=None):
        """Sends PreparedRequest object. Returns Response object.
    
        :param request: The :class:`PreparedRequest <PreparedRequest>` being sent.
        :param stream: (optional) Whether to stream the request content.
        :param timeout: (optional) How long to wait for the server to send
            data before giving up, as a float, or a :ref:`(connect timeout,
            read timeout) <timeouts>` tuple.
        :type timeout: float or tuple or urllib3 Timeout object
        :param verify: (optional) Either a boolean, in which case it controls whether
            we verify the server's TLS certificate, or a string, in which case it
            must be a path to a CA bundle to use
        :param cert: (optional) Any user-provided SSL certificate to be trusted.
        :param proxies: (optional) The proxies dictionary to apply to the request.
        :rtype: requests.Response
        """
    
        try:
            conn = self.get_connection(request.url, proxies)
        except LocationValueError as e:
            raise InvalidURL(e, request=request)
    
        self.cert_verify(conn, request.url, verify, cert)
        url = self.request_url(request, proxies)
        self.add_headers(request, stream=stream, timeout=timeout, verify=verify, cert=cert, proxies=proxies)
    
        chunked = not (request.body is None or 'Content-Length' in request.headers)
    
        if isinstance(timeout, tuple):
            try:
                connect, read = timeout
                timeout = TimeoutSauce(connect=connect, read=read)
            except ValueError as e:
                # this may raise a string formatting error.
                err = ("Invalid timeout {}. Pass a (connect, read) "
                       "timeout tuple, or a single float to set "
                       "both timeouts to the same value".format(timeout))
                raise ValueError(err)
        elif isinstance(timeout, TimeoutSauce):
            pass
        else:
            timeout = TimeoutSauce(connect=timeout, read=timeout)
    
        try:
            if not chunked:
                resp = conn.urlopen(
                    method=request.method,
                    url=url,
                    body=request.body,
                    headers=request.headers,
                    redirect=False,
                    assert_same_host=False,
                    preload_content=False,
                    decode_content=False,
                    retries=self.max_retries,
                    timeout=timeout
                )
    
            # Send the request.
            else:
                if hasattr(conn, 'proxy_pool'):
                    conn = conn.proxy_pool
    
                low_conn = conn._get_conn(timeout=DEFAULT_POOL_TIMEOUT)
    
                try:
                    low_conn.putrequest(request.method,
                                        url,
                                        skip_accept_encoding=True)
    
                    for header, value in request.headers.items():
                        low_conn.putheader(header, value)
    
                    low_conn.endheaders()
    
                    for i in request.body:
                        low_conn.send(hex(len(i))[2:].encode('utf-8'))
                        low_conn.send(b'\r\n')
                        low_conn.send(i)
                        low_conn.send(b'\r\n')
                    low_conn.send(b'0\r\n\r\n')
    
                    # Receive the response from the server
                    try:
                        # For Python 2.7, use buffering of HTTP responses
                        r = low_conn.getresponse(buffering=True)
                    except TypeError:
                        # For compatibility with Python 3.3+
                        r = low_conn.getresponse()
    
                    resp = HTTPResponse.from_httplib(
                        r,
                        pool=conn,
                        connection=low_conn,
                        preload_content=False,
                        decode_content=False
                    )
                except:
                    # If we hit any problems here, clean up the connection.
                    # Then, reraise so that we can handle the actual exception.
                    low_conn.close()
                    raise
    
        except (ProtocolError, socket.error) as err:
            raise ConnectionError(err, request=request)
    
        except MaxRetryError as e:
            if isinstance(e.reason, ConnectTimeoutError):
                # TODO: Remove this in 3.0.0: see #2811
                if not isinstance(e.reason, NewConnectionError):
                    raise ConnectTimeout(e, request=request)
    
            if isinstance(e.reason, ResponseError):
                raise RetryError(e, request=request)
    
            if isinstance(e.reason, _ProxyError):
                raise ProxyError(e, request=request)
    
            if isinstance(e.reason, _SSLError):
                # This branch is for urllib3 v1.22 and later.
                raise SSLError(e, request=request)
    
>           raise ConnectionError(e, request=request)
E           requests.exceptions.ConnectionError: HTTPSConnectionPool(host='scicrunch.org', port=443): Max retries exceeded with url: /api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7f754a4d0f40>: Failed to establish a new connection: [Errno 110] Connection timed out'))

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/adapters.py:516: ConnectionError
______________________ test_scicrunch_combined_facet_text ______________________

self = <urllib3.connection.HTTPSConnection object at 0x7f754a49faf0>

    def _new_conn(self):
        """Establish a socket connection and set nodelay settings on it.
    
        :return: New socket connection.
        """
        extra_kw = {}
        if self.source_address:
            extra_kw["source_address"] = self.source_address
    
        if self.socket_options:
            extra_kw["socket_options"] = self.socket_options
    
        try:
>           conn = connection.create_connection(
                (self._dns_host, self.port), self.timeout, **extra_kw
            )

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connection.py:169: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

address = ('scicrunch.org', 443), timeout = None, source_address = None
socket_options = [(6, 1, 1)]

    def create_connection(
        address,
        timeout=socket._GLOBAL_DEFAULT_TIMEOUT,
        source_address=None,
        socket_options=None,
    ):
        """Connect to *address* and return the socket object.
    
        Convenience function.  Connect to *address* (a 2-tuple ``(host,
        port)``) and return the socket object.  Passing the optional
        *timeout* parameter will set the timeout on the socket instance
        before attempting to connect.  If no *timeout* is supplied, the
        global default timeout setting returned by :func:`socket.getdefaulttimeout`
        is used.  If *source_address* is set it must be a tuple of (host, port)
        for the socket to bind as a source address before making the connection.
        An host of '' or port 0 tells the OS to use the default.
        """
    
        host, port = address
        if host.startswith("["):
            host = host.strip("[]")
        err = None
    
        # Using the value from allowed_gai_family() in the context of getaddrinfo lets
        # us select whether to work with IPv4 DNS records, IPv6 records, or both.
        # The original create_connection function always returns all records.
        family = allowed_gai_family()
    
        try:
            host.encode("idna")
        except UnicodeError:
            return six.raise_from(
                LocationParseError(u"'%s', label empty or too long" % host), None
            )
    
        for res in socket.getaddrinfo(host, port, family, socket.SOCK_STREAM):
            af, socktype, proto, canonname, sa = res
            sock = None
            try:
                sock = socket.socket(af, socktype, proto)
    
                # If provided, set socket level options before connecting.
                _set_socket_options(sock, socket_options)
    
                if timeout is not socket._GLOBAL_DEFAULT_TIMEOUT:
                    sock.settimeout(timeout)
                if source_address:
                    sock.bind(source_address)
                sock.connect(sa)
                return sock
    
            except socket.error as e:
                err = e
                if sock is not None:
                    sock.close()
                    sock = None
    
        if err is not None:
>           raise err

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/util/connection.py:96: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

address = ('scicrunch.org', 443), timeout = None, source_address = None
socket_options = [(6, 1, 1)]

    def create_connection(
        address,
        timeout=socket._GLOBAL_DEFAULT_TIMEOUT,
        source_address=None,
        socket_options=None,
    ):
        """Connect to *address* and return the socket object.
    
        Convenience function.  Connect to *address* (a 2-tuple ``(host,
        port)``) and return the socket object.  Passing the optional
        *timeout* parameter will set the timeout on the socket instance
        before attempting to connect.  If no *timeout* is supplied, the
        global default timeout setting returned by :func:`socket.getdefaulttimeout`
        is used.  If *source_address* is set it must be a tuple of (host, port)
        for the socket to bind as a source address before making the connection.
        An host of '' or port 0 tells the OS to use the default.
        """
    
        host, port = address
        if host.startswith("["):
            host = host.strip("[]")
        err = None
    
        # Using the value from allowed_gai_family() in the context of getaddrinfo lets
        # us select whether to work with IPv4 DNS records, IPv6 records, or both.
        # The original create_connection function always returns all records.
        family = allowed_gai_family()
    
        try:
            host.encode("idna")
        except UnicodeError:
            return six.raise_from(
                LocationParseError(u"'%s', label empty or too long" % host), None
            )
    
        for res in socket.getaddrinfo(host, port, family, socket.SOCK_STREAM):
            af, socktype, proto, canonname, sa = res
            sock = None
            try:
                sock = socket.socket(af, socktype, proto)
    
                # If provided, set socket level options before connecting.
                _set_socket_options(sock, socket_options)
    
                if timeout is not socket._GLOBAL_DEFAULT_TIMEOUT:
                    sock.settimeout(timeout)
                if source_address:
                    sock.bind(source_address)
>               sock.connect(sa)
E               TimeoutError: [Errno 110] Connection timed out

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/util/connection.py:86: TimeoutError

During handling of the above exception, another exception occurred:

self = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754a49fee0>
method = 'POST'
url = '/api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf'
body = b'{"size": 10, "from": 0, "query": {"query_string": {"query": "(heart) AND (attributes.subject.sex.value:((male) OR (female)))"}}}'
headers = {'User-Agent': 'python-requests/2.25.1', 'Accept-Encoding': 'gzip, deflate', 'Accept': '*/*', 'Connection': 'keep-alive', 'Content-Length': '128', 'Content-Type': 'application/json'}
retries = Retry(total=0, connect=None, read=False, redirect=None, status=None)
redirect = False, assert_same_host = False
timeout = Timeout(connect=None, read=None, total=None), pool_timeout = None
release_conn = False, chunked = False, body_pos = None
response_kw = {'decode_content': False, 'preload_content': False}
parsed_url = Url(scheme=None, auth=None, host=None, port=None, path='/api/1/elastic/SPARC_PortalDatasets_dev/_search', query='api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf', fragment=None)
destination_scheme = None, conn = None, release_this_conn = True
http_tunnel_required = False, err = None, clean_exit = False

    def urlopen(
        self,
        method,
        url,
        body=None,
        headers=None,
        retries=None,
        redirect=True,
        assert_same_host=True,
        timeout=_Default,
        pool_timeout=None,
        release_conn=None,
        chunked=False,
        body_pos=None,
        **response_kw
    ):
        """
        Get a connection from the pool and perform an HTTP request. This is the
        lowest level call for making a request, so you'll need to specify all
        the raw details.
    
        .. note::
    
           More commonly, it's appropriate to use a convenience method provided
           by :class:`.RequestMethods`, such as :meth:`request`.
    
        .. note::
    
           `release_conn` will only behave as expected if
           `preload_content=False` because we want to make
           `preload_content=False` the default behaviour someday soon without
           breaking backwards compatibility.
    
        :param method:
            HTTP request method (such as GET, POST, PUT, etc.)
    
        :param url:
            The URL to perform the request on.
    
        :param body:
            Data to send in the request body, either :class:`str`, :class:`bytes`,
            an iterable of :class:`str`/:class:`bytes`, or a file-like object.
    
        :param headers:
            Dictionary of custom headers to send, such as User-Agent,
            If-None-Match, etc. If None, pool headers are used. If provided,
            these headers completely replace any pool-specific headers.
    
        :param retries:
            Configure the number of retries to allow before raising a
            :class:`~urllib3.exceptions.MaxRetryError` exception.
    
            Pass ``None`` to retry until you receive a response. Pass a
            :class:`~urllib3.util.retry.Retry` object for fine-grained control
            over different types of retries.
            Pass an integer number to retry connection errors that many times,
            but no other types of errors. Pass zero to never retry.
    
            If ``False``, then retries are disabled and any exception is raised
            immediately. Also, instead of raising a MaxRetryError on redirects,
            the redirect response will be returned.
    
        :type retries: :class:`~urllib3.util.retry.Retry`, False, or an int.
    
        :param redirect:
            If True, automatically handle redirects (status codes 301, 302,
            303, 307, 308). Each redirect counts as a retry. Disabling retries
            will disable redirect, too.
    
        :param assert_same_host:
            If ``True``, will make sure that the host of the pool requests is
            consistent else will raise HostChangedError. When ``False``, you can
            use the pool on an HTTP proxy and request foreign hosts.
    
        :param timeout:
            If specified, overrides the default timeout for this one
            request. It may be a float (in seconds) or an instance of
            :class:`urllib3.util.Timeout`.
    
        :param pool_timeout:
            If set and the pool is set to block=True, then this method will
            block for ``pool_timeout`` seconds and raise EmptyPoolError if no
            connection is available within the time period.
    
        :param release_conn:
            If False, then the urlopen call will not release the connection
            back into the pool once a response is received (but will release if
            you read the entire contents of the response such as when
            `preload_content=True`). This is useful if you're not preloading
            the response's content immediately. You will need to call
            ``r.release_conn()`` on the response ``r`` to return the connection
            back into the pool. If None, it takes the value of
            ``response_kw.get('preload_content', True)``.
    
        :param chunked:
            If True, urllib3 will send the body using chunked transfer
            encoding. Otherwise, urllib3 will send the body using the standard
            content-length form. Defaults to False.
    
        :param int body_pos:
            Position to seek to in file-like body in the event of a retry or
            redirect. Typically this won't need to be set because urllib3 will
            auto-populate the value when needed.
    
        :param \\**response_kw:
            Additional parameters are passed to
            :meth:`urllib3.response.HTTPResponse.from_httplib`
        """
    
        parsed_url = parse_url(url)
        destination_scheme = parsed_url.scheme
    
        if headers is None:
            headers = self.headers
    
        if not isinstance(retries, Retry):
            retries = Retry.from_int(retries, redirect=redirect, default=self.retries)
    
        if release_conn is None:
            release_conn = response_kw.get("preload_content", True)
    
        # Check host
        if assert_same_host and not self.is_same_host(url):
            raise HostChangedError(self, url, retries)
    
        # Ensure that the URL we're connecting to is properly encoded
        if url.startswith("/"):
            url = six.ensure_str(_encode_target(url))
        else:
            url = six.ensure_str(parsed_url.url)
    
        conn = None
    
        # Track whether `conn` needs to be released before
        # returning/raising/recursing. Update this variable if necessary, and
        # leave `release_conn` constant throughout the function. That way, if
        # the function recurses, the original value of `release_conn` will be
        # passed down into the recursive call, and its value will be respected.
        #
        # See issue #651 [1] for details.
        #
        # [1] <https://github.com/urllib3/urllib3/issues/651>
        release_this_conn = release_conn
    
        http_tunnel_required = connection_requires_http_tunnel(
            self.proxy, self.proxy_config, destination_scheme
        )
    
        # Merge the proxy headers. Only done when not using HTTP CONNECT. We
        # have to copy the headers dict so we can safely change it without those
        # changes being reflected in anyone else's copy.
        if not http_tunnel_required:
            headers = headers.copy()
            headers.update(self.proxy_headers)
    
        # Must keep the exception bound to a separate variable or else Python 3
        # complains about UnboundLocalError.
        err = None
    
        # Keep track of whether we cleanly exited the except block. This
        # ensures we do proper cleanup in finally.
        clean_exit = False
    
        # Rewind body position, if needed. Record current position
        # for future rewinds in the event of a redirect/retry.
        body_pos = set_file_position(body, body_pos)
    
        try:
            # Request a connection from the queue.
            timeout_obj = self._get_timeout(timeout)
            conn = self._get_conn(timeout=pool_timeout)
    
            conn.timeout = timeout_obj.connect_timeout
    
            is_new_proxy_conn = self.proxy is not None and not getattr(
                conn, "sock", None
            )
            if is_new_proxy_conn and http_tunnel_required:
                self._prepare_proxy(conn)
    
            # Make the request on the httplib connection object.
>           httplib_response = self._make_request(
                conn,
                method,
                url,
                timeout=timeout_obj,
                body=body,
                headers=headers,
                chunked=chunked,
            )

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py:699: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754a49fee0>
conn = <urllib3.connection.HTTPSConnection object at 0x7f754a49faf0>
method = 'POST'
url = '/api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf'
timeout = Timeout(connect=None, read=None, total=None), chunked = False
httplib_request_kw = {'body': b'{"size": 10, "from": 0, "query": {"query_string": {"query": "(heart) AND (attributes.subject.sex.value:((ma...p, deflate', 'Accept': '*/*', 'Connection': 'keep-alive', 'Content-Length': '128', 'Content-Type': 'application/json'}}
timeout_obj = Timeout(connect=None, read=None, total=None)

    def _make_request(
        self, conn, method, url, timeout=_Default, chunked=False, **httplib_request_kw
    ):
        """
        Perform a request on a given urllib connection object taken from our
        pool.
    
        :param conn:
            a connection from one of our connection pools
    
        :param timeout:
            Socket timeout in seconds for the request. This can be a
            float or integer, which will set the same timeout value for
            the socket connect and the socket read, or an instance of
            :class:`urllib3.util.Timeout`, which gives you more fine-grained
            control over your timeouts.
        """
        self.num_requests += 1
    
        timeout_obj = self._get_timeout(timeout)
        timeout_obj.start_connect()
        conn.timeout = timeout_obj.connect_timeout
    
        # Trigger any extra validation we need to do.
        try:
>           self._validate_conn(conn)

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py:382: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754a49fee0>
conn = <urllib3.connection.HTTPSConnection object at 0x7f754a49faf0>

    def _validate_conn(self, conn):
        """
        Called right before a request is made, after the socket is created.
        """
        super(HTTPSConnectionPool, self)._validate_conn(conn)
    
        # Force connect early to allow us to validate the connection.
        if not getattr(conn, "sock", None):  # AppEngine might not have  `.sock`
>           conn.connect()

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py:1010: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connection.HTTPSConnection object at 0x7f754a49faf0>

    def connect(self):
        # Add certificate verification
>       conn = self._new_conn()

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connection.py:353: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connection.HTTPSConnection object at 0x7f754a49faf0>

    def _new_conn(self):
        """Establish a socket connection and set nodelay settings on it.
    
        :return: New socket connection.
        """
        extra_kw = {}
        if self.source_address:
            extra_kw["source_address"] = self.source_address
    
        if self.socket_options:
            extra_kw["socket_options"] = self.socket_options
    
        try:
            conn = connection.create_connection(
                (self._dns_host, self.port), self.timeout, **extra_kw
            )
    
        except SocketTimeout:
            raise ConnectTimeoutError(
                self,
                "Connection to %s timed out. (connect timeout=%s)"
                % (self.host, self.timeout),
            )
    
        except SocketError as e:
>           raise NewConnectionError(
                self, "Failed to establish a new connection: %s" % e
            )
E           urllib3.exceptions.NewConnectionError: <urllib3.connection.HTTPSConnection object at 0x7f754a49faf0>: Failed to establish a new connection: [Errno 110] Connection timed out

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connection.py:181: NewConnectionError

During handling of the above exception, another exception occurred:

self = <requests.adapters.HTTPAdapter object at 0x7f754a45b0a0>
request = <PreparedRequest [POST]>, stream = False
timeout = Timeout(connect=None, read=None, total=None), verify = True
cert = None, proxies = OrderedDict()

    def send(self, request, stream=False, timeout=None, verify=True, cert=None, proxies=None):
        """Sends PreparedRequest object. Returns Response object.
    
        :param request: The :class:`PreparedRequest <PreparedRequest>` being sent.
        :param stream: (optional) Whether to stream the request content.
        :param timeout: (optional) How long to wait for the server to send
            data before giving up, as a float, or a :ref:`(connect timeout,
            read timeout) <timeouts>` tuple.
        :type timeout: float or tuple or urllib3 Timeout object
        :param verify: (optional) Either a boolean, in which case it controls whether
            we verify the server's TLS certificate, or a string, in which case it
            must be a path to a CA bundle to use
        :param cert: (optional) Any user-provided SSL certificate to be trusted.
        :param proxies: (optional) The proxies dictionary to apply to the request.
        :rtype: requests.Response
        """
    
        try:
            conn = self.get_connection(request.url, proxies)
        except LocationValueError as e:
            raise InvalidURL(e, request=request)
    
        self.cert_verify(conn, request.url, verify, cert)
        url = self.request_url(request, proxies)
        self.add_headers(request, stream=stream, timeout=timeout, verify=verify, cert=cert, proxies=proxies)
    
        chunked = not (request.body is None or 'Content-Length' in request.headers)
    
        if isinstance(timeout, tuple):
            try:
                connect, read = timeout
                timeout = TimeoutSauce(connect=connect, read=read)
            except ValueError as e:
                # this may raise a string formatting error.
                err = ("Invalid timeout {}. Pass a (connect, read) "
                       "timeout tuple, or a single float to set "
                       "both timeouts to the same value".format(timeout))
                raise ValueError(err)
        elif isinstance(timeout, TimeoutSauce):
            pass
        else:
            timeout = TimeoutSauce(connect=timeout, read=timeout)
    
        try:
            if not chunked:
>               resp = conn.urlopen(
                    method=request.method,
                    url=url,
                    body=request.body,
                    headers=request.headers,
                    redirect=False,
                    assert_same_host=False,
                    preload_content=False,
                    decode_content=False,
                    retries=self.max_retries,
                    timeout=timeout
                )

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/adapters.py:439: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754a49fee0>
method = 'POST'
url = '/api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf'
body = b'{"size": 10, "from": 0, "query": {"query_string": {"query": "(heart) AND (attributes.subject.sex.value:((male) OR (female)))"}}}'
headers = {'User-Agent': 'python-requests/2.25.1', 'Accept-Encoding': 'gzip, deflate', 'Accept': '*/*', 'Connection': 'keep-alive', 'Content-Length': '128', 'Content-Type': 'application/json'}
retries = Retry(total=0, connect=None, read=False, redirect=None, status=None)
redirect = False, assert_same_host = False
timeout = Timeout(connect=None, read=None, total=None), pool_timeout = None
release_conn = False, chunked = False, body_pos = None
response_kw = {'decode_content': False, 'preload_content': False}
parsed_url = Url(scheme=None, auth=None, host=None, port=None, path='/api/1/elastic/SPARC_PortalDatasets_dev/_search', query='api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf', fragment=None)
destination_scheme = None, conn = None, release_this_conn = True
http_tunnel_required = False, err = None, clean_exit = False

    def urlopen(
        self,
        method,
        url,
        body=None,
        headers=None,
        retries=None,
        redirect=True,
        assert_same_host=True,
        timeout=_Default,
        pool_timeout=None,
        release_conn=None,
        chunked=False,
        body_pos=None,
        **response_kw
    ):
        """
        Get a connection from the pool and perform an HTTP request. This is the
        lowest level call for making a request, so you'll need to specify all
        the raw details.
    
        .. note::
    
           More commonly, it's appropriate to use a convenience method provided
           by :class:`.RequestMethods`, such as :meth:`request`.
    
        .. note::
    
           `release_conn` will only behave as expected if
           `preload_content=False` because we want to make
           `preload_content=False` the default behaviour someday soon without
           breaking backwards compatibility.
    
        :param method:
            HTTP request method (such as GET, POST, PUT, etc.)
    
        :param url:
            The URL to perform the request on.
    
        :param body:
            Data to send in the request body, either :class:`str`, :class:`bytes`,
            an iterable of :class:`str`/:class:`bytes`, or a file-like object.
    
        :param headers:
            Dictionary of custom headers to send, such as User-Agent,
            If-None-Match, etc. If None, pool headers are used. If provided,
            these headers completely replace any pool-specific headers.
    
        :param retries:
            Configure the number of retries to allow before raising a
            :class:`~urllib3.exceptions.MaxRetryError` exception.
    
            Pass ``None`` to retry until you receive a response. Pass a
            :class:`~urllib3.util.retry.Retry` object for fine-grained control
            over different types of retries.
            Pass an integer number to retry connection errors that many times,
            but no other types of errors. Pass zero to never retry.
    
            If ``False``, then retries are disabled and any exception is raised
            immediately. Also, instead of raising a MaxRetryError on redirects,
            the redirect response will be returned.
    
        :type retries: :class:`~urllib3.util.retry.Retry`, False, or an int.
    
        :param redirect:
            If True, automatically handle redirects (status codes 301, 302,
            303, 307, 308). Each redirect counts as a retry. Disabling retries
            will disable redirect, too.
    
        :param assert_same_host:
            If ``True``, will make sure that the host of the pool requests is
            consistent else will raise HostChangedError. When ``False``, you can
            use the pool on an HTTP proxy and request foreign hosts.
    
        :param timeout:
            If specified, overrides the default timeout for this one
            request. It may be a float (in seconds) or an instance of
            :class:`urllib3.util.Timeout`.
    
        :param pool_timeout:
            If set and the pool is set to block=True, then this method will
            block for ``pool_timeout`` seconds and raise EmptyPoolError if no
            connection is available within the time period.
    
        :param release_conn:
            If False, then the urlopen call will not release the connection
            back into the pool once a response is received (but will release if
            you read the entire contents of the response such as when
            `preload_content=True`). This is useful if you're not preloading
            the response's content immediately. You will need to call
            ``r.release_conn()`` on the response ``r`` to return the connection
            back into the pool. If None, it takes the value of
            ``response_kw.get('preload_content', True)``.
    
        :param chunked:
            If True, urllib3 will send the body using chunked transfer
            encoding. Otherwise, urllib3 will send the body using the standard
            content-length form. Defaults to False.
    
        :param int body_pos:
            Position to seek to in file-like body in the event of a retry or
            redirect. Typically this won't need to be set because urllib3 will
            auto-populate the value when needed.
    
        :param \\**response_kw:
            Additional parameters are passed to
            :meth:`urllib3.response.HTTPResponse.from_httplib`
        """
    
        parsed_url = parse_url(url)
        destination_scheme = parsed_url.scheme
    
        if headers is None:
            headers = self.headers
    
        if not isinstance(retries, Retry):
            retries = Retry.from_int(retries, redirect=redirect, default=self.retries)
    
        if release_conn is None:
            release_conn = response_kw.get("preload_content", True)
    
        # Check host
        if assert_same_host and not self.is_same_host(url):
            raise HostChangedError(self, url, retries)
    
        # Ensure that the URL we're connecting to is properly encoded
        if url.startswith("/"):
            url = six.ensure_str(_encode_target(url))
        else:
            url = six.ensure_str(parsed_url.url)
    
        conn = None
    
        # Track whether `conn` needs to be released before
        # returning/raising/recursing. Update this variable if necessary, and
        # leave `release_conn` constant throughout the function. That way, if
        # the function recurses, the original value of `release_conn` will be
        # passed down into the recursive call, and its value will be respected.
        #
        # See issue #651 [1] for details.
        #
        # [1] <https://github.com/urllib3/urllib3/issues/651>
        release_this_conn = release_conn
    
        http_tunnel_required = connection_requires_http_tunnel(
            self.proxy, self.proxy_config, destination_scheme
        )
    
        # Merge the proxy headers. Only done when not using HTTP CONNECT. We
        # have to copy the headers dict so we can safely change it without those
        # changes being reflected in anyone else's copy.
        if not http_tunnel_required:
            headers = headers.copy()
            headers.update(self.proxy_headers)
    
        # Must keep the exception bound to a separate variable or else Python 3
        # complains about UnboundLocalError.
        err = None
    
        # Keep track of whether we cleanly exited the except block. This
        # ensures we do proper cleanup in finally.
        clean_exit = False
    
        # Rewind body position, if needed. Record current position
        # for future rewinds in the event of a redirect/retry.
        body_pos = set_file_position(body, body_pos)
    
        try:
            # Request a connection from the queue.
            timeout_obj = self._get_timeout(timeout)
            conn = self._get_conn(timeout=pool_timeout)
    
            conn.timeout = timeout_obj.connect_timeout
    
            is_new_proxy_conn = self.proxy is not None and not getattr(
                conn, "sock", None
            )
            if is_new_proxy_conn and http_tunnel_required:
                self._prepare_proxy(conn)
    
            # Make the request on the httplib connection object.
            httplib_response = self._make_request(
                conn,
                method,
                url,
                timeout=timeout_obj,
                body=body,
                headers=headers,
                chunked=chunked,
            )
    
            # If we're going to release the connection in ``finally:``, then
            # the response doesn't need to know about the connection. Otherwise
            # it will also try to release it and we'll have a double-release
            # mess.
            response_conn = conn if not release_conn else None
    
            # Pass method to Response for length checking
            response_kw["request_method"] = method
    
            # Import httplib's response into our own wrapper object
            response = self.ResponseCls.from_httplib(
                httplib_response,
                pool=self,
                connection=response_conn,
                retries=retries,
                **response_kw
            )
    
            # Everything went great!
            clean_exit = True
    
        except EmptyPoolError:
            # Didn't get a connection from the pool, no need to clean up
            clean_exit = True
            release_this_conn = False
            raise
    
        except (
            TimeoutError,
            HTTPException,
            SocketError,
            ProtocolError,
            BaseSSLError,
            SSLError,
            CertificateError,
        ) as e:
            # Discard the connection for these exceptions. It will be
            # replaced during the next _get_conn() call.
            clean_exit = False
            if isinstance(e, (BaseSSLError, CertificateError)):
                e = SSLError(e)
            elif isinstance(e, (SocketError, NewConnectionError)) and self.proxy:
                e = ProxyError("Cannot connect to proxy.", e)
            elif isinstance(e, (SocketError, HTTPException)):
                e = ProtocolError("Connection aborted.", e)
    
>           retries = retries.increment(
                method, url, error=e, _pool=self, _stacktrace=sys.exc_info()[2]
            )

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py:755: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = Retry(total=0, connect=None, read=False, redirect=None, status=None)
method = 'POST'
url = '/api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf'
response = None
error = NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7f754a49faf0>: Failed to establish a new connection: [Errno 110] Connection timed out')
_pool = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754a49fee0>
_stacktrace = <traceback object at 0x7f754a48a700>

    def increment(
        self,
        method=None,
        url=None,
        response=None,
        error=None,
        _pool=None,
        _stacktrace=None,
    ):
        """Return a new Retry object with incremented retry counters.
    
        :param response: A response object, or None, if the server did not
            return a response.
        :type response: :class:`~urllib3.response.HTTPResponse`
        :param Exception error: An error encountered during the request, or
            None if the response was received successfully.
    
        :return: A new ``Retry`` object.
        """
        if self.total is False and error:
            # Disabled, indicate to re-raise the error.
            raise six.reraise(type(error), error, _stacktrace)
    
        total = self.total
        if total is not None:
            total -= 1
    
        connect = self.connect
        read = self.read
        redirect = self.redirect
        status_count = self.status
        other = self.other
        cause = "unknown"
        status = None
        redirect_location = None
    
        if error and self._is_connection_error(error):
            # Connect retry?
            if connect is False:
                raise six.reraise(type(error), error, _stacktrace)
            elif connect is not None:
                connect -= 1
    
        elif error and self._is_read_error(error):
            # Read retry?
            if read is False or not self._is_method_retryable(method):
                raise six.reraise(type(error), error, _stacktrace)
            elif read is not None:
                read -= 1
    
        elif error:
            # Other retry?
            if other is not None:
                other -= 1
    
        elif response and response.get_redirect_location():
            # Redirect retry?
            if redirect is not None:
                redirect -= 1
            cause = "too many redirects"
            redirect_location = response.get_redirect_location()
            status = response.status
    
        else:
            # Incrementing because of a server error like a 500 in
            # status_forcelist and the given method is in the allowed_methods
            cause = ResponseError.GENERIC_ERROR
            if response and response.status:
                if status_count is not None:
                    status_count -= 1
                cause = ResponseError.SPECIFIC_ERROR.format(status_code=response.status)
                status = response.status
    
        history = self.history + (
            RequestHistory(method, url, error, status, redirect_location),
        )
    
        new_retry = self.new(
            total=total,
            connect=connect,
            read=read,
            redirect=redirect,
            status=status_count,
            other=other,
            history=history,
        )
    
        if new_retry.is_exhausted():
>           raise MaxRetryError(_pool, url, error or ResponseError(cause))
E           urllib3.exceptions.MaxRetryError: HTTPSConnectionPool(host='scicrunch.org', port=443): Max retries exceeded with url: /api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7f754a49faf0>: Failed to establish a new connection: [Errno 110] Connection timed out'))

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/util/retry.py:574: MaxRetryError

During handling of the above exception, another exception occurred:

client = <FlaskClient <Flask 'app.main'>>

    def test_scicrunch_combined_facet_text(client):
>       r = client.get('/filter-search/heart/?facet=All+Species&term=species&facet=male&term=gender&facet=female&term=gender')

tests/test_scicrunch.py:147: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/werkzeug/test.py:1029: in get
    return self.open(*args, **kw)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/testing.py:222: in open
    return Client.open(
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/werkzeug/test.py:993: in open
    response = self.run_wsgi_app(environ.copy(), buffered=buffered)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/werkzeug/test.py:884: in run_wsgi_app
    rv = run_wsgi_app(self.application, environ, buffered=buffered)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/werkzeug/test.py:1119: in run_wsgi_app
    app_rv = app(environ, start_response)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:2463: in __call__
    return self.wsgi_app(environ, start_response)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:2449: in wsgi_app
    response = self.handle_exception(e)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask_cors/extension.py:161: in wrapped_function
    return cors_after_request(app.make_response(f(*args, **kwargs)))
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1866: in handle_exception
    reraise(exc_type, exc_value, tb)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/_compat.py:39: in reraise
    raise value
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:2446: in wsgi_app
    response = self.full_dispatch_request()
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1951: in full_dispatch_request
    rv = self.handle_user_exception(e)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask_cors/extension.py:161: in wrapped_function
    return cors_after_request(app.make_response(f(*args, **kwargs)))
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1820: in handle_user_exception
    reraise(exc_type, exc_value, tb)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/_compat.py:39: in reraise
    raise value
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1949: in full_dispatch_request
    rv = self.dispatch_request()
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1935: in dispatch_request
    return self.view_functions[rule.endpoint](**req.view_args)
app/main.py:707: in filter_search
    response = requests.post(
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/api.py:119: in post
    return request('post', url, data=data, json=json, **kwargs)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/api.py:61: in request
    return session.request(method=method, url=url, **kwargs)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/sessions.py:542: in request
    resp = self.send(prep, **send_kwargs)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/sessions.py:655: in send
    r = adapter.send(request, **kwargs)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <requests.adapters.HTTPAdapter object at 0x7f754a45b0a0>
request = <PreparedRequest [POST]>, stream = False
timeout = Timeout(connect=None, read=None, total=None), verify = True
cert = None, proxies = OrderedDict()

    def send(self, request, stream=False, timeout=None, verify=True, cert=None, proxies=None):
        """Sends PreparedRequest object. Returns Response object.
    
        :param request: The :class:`PreparedRequest <PreparedRequest>` being sent.
        :param stream: (optional) Whether to stream the request content.
        :param timeout: (optional) How long to wait for the server to send
            data before giving up, as a float, or a :ref:`(connect timeout,
            read timeout) <timeouts>` tuple.
        :type timeout: float or tuple or urllib3 Timeout object
        :param verify: (optional) Either a boolean, in which case it controls whether
            we verify the server's TLS certificate, or a string, in which case it
            must be a path to a CA bundle to use
        :param cert: (optional) Any user-provided SSL certificate to be trusted.
        :param proxies: (optional) The proxies dictionary to apply to the request.
        :rtype: requests.Response
        """
    
        try:
            conn = self.get_connection(request.url, proxies)
        except LocationValueError as e:
            raise InvalidURL(e, request=request)
    
        self.cert_verify(conn, request.url, verify, cert)
        url = self.request_url(request, proxies)
        self.add_headers(request, stream=stream, timeout=timeout, verify=verify, cert=cert, proxies=proxies)
    
        chunked = not (request.body is None or 'Content-Length' in request.headers)
    
        if isinstance(timeout, tuple):
            try:
                connect, read = timeout
                timeout = TimeoutSauce(connect=connect, read=read)
            except ValueError as e:
                # this may raise a string formatting error.
                err = ("Invalid timeout {}. Pass a (connect, read) "
                       "timeout tuple, or a single float to set "
                       "both timeouts to the same value".format(timeout))
                raise ValueError(err)
        elif isinstance(timeout, TimeoutSauce):
            pass
        else:
            timeout = TimeoutSauce(connect=timeout, read=timeout)
    
        try:
            if not chunked:
                resp = conn.urlopen(
                    method=request.method,
                    url=url,
                    body=request.body,
                    headers=request.headers,
                    redirect=False,
                    assert_same_host=False,
                    preload_content=False,
                    decode_content=False,
                    retries=self.max_retries,
                    timeout=timeout
                )
    
            # Send the request.
            else:
                if hasattr(conn, 'proxy_pool'):
                    conn = conn.proxy_pool
    
                low_conn = conn._get_conn(timeout=DEFAULT_POOL_TIMEOUT)
    
                try:
                    low_conn.putrequest(request.method,
                                        url,
                                        skip_accept_encoding=True)
    
                    for header, value in request.headers.items():
                        low_conn.putheader(header, value)
    
                    low_conn.endheaders()
    
                    for i in request.body:
                        low_conn.send(hex(len(i))[2:].encode('utf-8'))
                        low_conn.send(b'\r\n')
                        low_conn.send(i)
                        low_conn.send(b'\r\n')
                    low_conn.send(b'0\r\n\r\n')
    
                    # Receive the response from the server
                    try:
                        # For Python 2.7, use buffering of HTTP responses
                        r = low_conn.getresponse(buffering=True)
                    except TypeError:
                        # For compatibility with Python 3.3+
                        r = low_conn.getresponse()
    
                    resp = HTTPResponse.from_httplib(
                        r,
                        pool=conn,
                        connection=low_conn,
                        preload_content=False,
                        decode_content=False
                    )
                except:
                    # If we hit any problems here, clean up the connection.
                    # Then, reraise so that we can handle the actual exception.
                    low_conn.close()
                    raise
    
        except (ProtocolError, socket.error) as err:
            raise ConnectionError(err, request=request)
    
        except MaxRetryError as e:
            if isinstance(e.reason, ConnectTimeoutError):
                # TODO: Remove this in 3.0.0: see #2811
                if not isinstance(e.reason, NewConnectionError):
                    raise ConnectTimeout(e, request=request)
    
            if isinstance(e.reason, ResponseError):
                raise RetryError(e, request=request)
    
            if isinstance(e.reason, _ProxyError):
                raise ProxyError(e, request=request)
    
            if isinstance(e.reason, _SSLError):
                # This branch is for urllib3 v1.22 and later.
                raise SSLError(e, request=request)
    
>           raise ConnectionError(e, request=request)
E           requests.exceptions.ConnectionError: HTTPSConnectionPool(host='scicrunch.org', port=443): Max retries exceeded with url: /api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7f754a49faf0>: Failed to establish a new connection: [Errno 110] Connection timed out'))

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/adapters.py:516: ConnectionError
_____________________________ test_getting_facets ______________________________

self = <urllib3.connection.HTTPSConnection object at 0x7f754a591460>

    def _new_conn(self):
        """Establish a socket connection and set nodelay settings on it.
    
        :return: New socket connection.
        """
        extra_kw = {}
        if self.source_address:
            extra_kw["source_address"] = self.source_address
    
        if self.socket_options:
            extra_kw["socket_options"] = self.socket_options
    
        try:
>           conn = connection.create_connection(
                (self._dns_host, self.port), self.timeout, **extra_kw
            )

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connection.py:169: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

address = ('scicrunch.org', 443), timeout = None, source_address = None
socket_options = [(6, 1, 1)]

    def create_connection(
        address,
        timeout=socket._GLOBAL_DEFAULT_TIMEOUT,
        source_address=None,
        socket_options=None,
    ):
        """Connect to *address* and return the socket object.
    
        Convenience function.  Connect to *address* (a 2-tuple ``(host,
        port)``) and return the socket object.  Passing the optional
        *timeout* parameter will set the timeout on the socket instance
        before attempting to connect.  If no *timeout* is supplied, the
        global default timeout setting returned by :func:`socket.getdefaulttimeout`
        is used.  If *source_address* is set it must be a tuple of (host, port)
        for the socket to bind as a source address before making the connection.
        An host of '' or port 0 tells the OS to use the default.
        """
    
        host, port = address
        if host.startswith("["):
            host = host.strip("[]")
        err = None
    
        # Using the value from allowed_gai_family() in the context of getaddrinfo lets
        # us select whether to work with IPv4 DNS records, IPv6 records, or both.
        # The original create_connection function always returns all records.
        family = allowed_gai_family()
    
        try:
            host.encode("idna")
        except UnicodeError:
            return six.raise_from(
                LocationParseError(u"'%s', label empty or too long" % host), None
            )
    
        for res in socket.getaddrinfo(host, port, family, socket.SOCK_STREAM):
            af, socktype, proto, canonname, sa = res
            sock = None
            try:
                sock = socket.socket(af, socktype, proto)
    
                # If provided, set socket level options before connecting.
                _set_socket_options(sock, socket_options)
    
                if timeout is not socket._GLOBAL_DEFAULT_TIMEOUT:
                    sock.settimeout(timeout)
                if source_address:
                    sock.bind(source_address)
                sock.connect(sa)
                return sock
    
            except socket.error as e:
                err = e
                if sock is not None:
                    sock.close()
                    sock = None
    
        if err is not None:
>           raise err

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/util/connection.py:96: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

address = ('scicrunch.org', 443), timeout = None, source_address = None
socket_options = [(6, 1, 1)]

    def create_connection(
        address,
        timeout=socket._GLOBAL_DEFAULT_TIMEOUT,
        source_address=None,
        socket_options=None,
    ):
        """Connect to *address* and return the socket object.
    
        Convenience function.  Connect to *address* (a 2-tuple ``(host,
        port)``) and return the socket object.  Passing the optional
        *timeout* parameter will set the timeout on the socket instance
        before attempting to connect.  If no *timeout* is supplied, the
        global default timeout setting returned by :func:`socket.getdefaulttimeout`
        is used.  If *source_address* is set it must be a tuple of (host, port)
        for the socket to bind as a source address before making the connection.
        An host of '' or port 0 tells the OS to use the default.
        """
    
        host, port = address
        if host.startswith("["):
            host = host.strip("[]")
        err = None
    
        # Using the value from allowed_gai_family() in the context of getaddrinfo lets
        # us select whether to work with IPv4 DNS records, IPv6 records, or both.
        # The original create_connection function always returns all records.
        family = allowed_gai_family()
    
        try:
            host.encode("idna")
        except UnicodeError:
            return six.raise_from(
                LocationParseError(u"'%s', label empty or too long" % host), None
            )
    
        for res in socket.getaddrinfo(host, port, family, socket.SOCK_STREAM):
            af, socktype, proto, canonname, sa = res
            sock = None
            try:
                sock = socket.socket(af, socktype, proto)
    
                # If provided, set socket level options before connecting.
                _set_socket_options(sock, socket_options)
    
                if timeout is not socket._GLOBAL_DEFAULT_TIMEOUT:
                    sock.settimeout(timeout)
                if source_address:
                    sock.bind(source_address)
>               sock.connect(sa)
E               TimeoutError: [Errno 110] Connection timed out

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/util/connection.py:86: TimeoutError

During handling of the above exception, another exception occurred:

self = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754a4321f0>
method = 'POST'
url = '/api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf'
body = b'{"from": 0, "size": 0, "aggregations": {"organ": {"terms": {"field": "anatomy.organ.name.aggregate", "size": 200, "order": [{"_count": "desc"}, {"_key": "asc"}]}}}}'
headers = {'User-Agent': 'python-requests/2.25.1', 'Accept-Encoding': 'gzip, deflate', 'Accept': '*/*', 'Connection': 'keep-alive', 'Content-Length': '164', 'Content-Type': 'application/json'}
retries = Retry(total=0, connect=None, read=False, redirect=None, status=None)
redirect = False, assert_same_host = False
timeout = Timeout(connect=None, read=None, total=None), pool_timeout = None
release_conn = False, chunked = False, body_pos = None
response_kw = {'decode_content': False, 'preload_content': False}
parsed_url = Url(scheme=None, auth=None, host=None, port=None, path='/api/1/elastic/SPARC_PortalDatasets_dev/_search', query='api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf', fragment=None)
destination_scheme = None, conn = None, release_this_conn = True
http_tunnel_required = False, err = None, clean_exit = False

    def urlopen(
        self,
        method,
        url,
        body=None,
        headers=None,
        retries=None,
        redirect=True,
        assert_same_host=True,
        timeout=_Default,
        pool_timeout=None,
        release_conn=None,
        chunked=False,
        body_pos=None,
        **response_kw
    ):
        """
        Get a connection from the pool and perform an HTTP request. This is the
        lowest level call for making a request, so you'll need to specify all
        the raw details.
    
        .. note::
    
           More commonly, it's appropriate to use a convenience method provided
           by :class:`.RequestMethods`, such as :meth:`request`.
    
        .. note::
    
           `release_conn` will only behave as expected if
           `preload_content=False` because we want to make
           `preload_content=False` the default behaviour someday soon without
           breaking backwards compatibility.
    
        :param method:
            HTTP request method (such as GET, POST, PUT, etc.)
    
        :param url:
            The URL to perform the request on.
    
        :param body:
            Data to send in the request body, either :class:`str`, :class:`bytes`,
            an iterable of :class:`str`/:class:`bytes`, or a file-like object.
    
        :param headers:
            Dictionary of custom headers to send, such as User-Agent,
            If-None-Match, etc. If None, pool headers are used. If provided,
            these headers completely replace any pool-specific headers.
    
        :param retries:
            Configure the number of retries to allow before raising a
            :class:`~urllib3.exceptions.MaxRetryError` exception.
    
            Pass ``None`` to retry until you receive a response. Pass a
            :class:`~urllib3.util.retry.Retry` object for fine-grained control
            over different types of retries.
            Pass an integer number to retry connection errors that many times,
            but no other types of errors. Pass zero to never retry.
    
            If ``False``, then retries are disabled and any exception is raised
            immediately. Also, instead of raising a MaxRetryError on redirects,
            the redirect response will be returned.
    
        :type retries: :class:`~urllib3.util.retry.Retry`, False, or an int.
    
        :param redirect:
            If True, automatically handle redirects (status codes 301, 302,
            303, 307, 308). Each redirect counts as a retry. Disabling retries
            will disable redirect, too.
    
        :param assert_same_host:
            If ``True``, will make sure that the host of the pool requests is
            consistent else will raise HostChangedError. When ``False``, you can
            use the pool on an HTTP proxy and request foreign hosts.
    
        :param timeout:
            If specified, overrides the default timeout for this one
            request. It may be a float (in seconds) or an instance of
            :class:`urllib3.util.Timeout`.
    
        :param pool_timeout:
            If set and the pool is set to block=True, then this method will
            block for ``pool_timeout`` seconds and raise EmptyPoolError if no
            connection is available within the time period.
    
        :param release_conn:
            If False, then the urlopen call will not release the connection
            back into the pool once a response is received (but will release if
            you read the entire contents of the response such as when
            `preload_content=True`). This is useful if you're not preloading
            the response's content immediately. You will need to call
            ``r.release_conn()`` on the response ``r`` to return the connection
            back into the pool. If None, it takes the value of
            ``response_kw.get('preload_content', True)``.
    
        :param chunked:
            If True, urllib3 will send the body using chunked transfer
            encoding. Otherwise, urllib3 will send the body using the standard
            content-length form. Defaults to False.
    
        :param int body_pos:
            Position to seek to in file-like body in the event of a retry or
            redirect. Typically this won't need to be set because urllib3 will
            auto-populate the value when needed.
    
        :param \\**response_kw:
            Additional parameters are passed to
            :meth:`urllib3.response.HTTPResponse.from_httplib`
        """
    
        parsed_url = parse_url(url)
        destination_scheme = parsed_url.scheme
    
        if headers is None:
            headers = self.headers
    
        if not isinstance(retries, Retry):
            retries = Retry.from_int(retries, redirect=redirect, default=self.retries)
    
        if release_conn is None:
            release_conn = response_kw.get("preload_content", True)
    
        # Check host
        if assert_same_host and not self.is_same_host(url):
            raise HostChangedError(self, url, retries)
    
        # Ensure that the URL we're connecting to is properly encoded
        if url.startswith("/"):
            url = six.ensure_str(_encode_target(url))
        else:
            url = six.ensure_str(parsed_url.url)
    
        conn = None
    
        # Track whether `conn` needs to be released before
        # returning/raising/recursing. Update this variable if necessary, and
        # leave `release_conn` constant throughout the function. That way, if
        # the function recurses, the original value of `release_conn` will be
        # passed down into the recursive call, and its value will be respected.
        #
        # See issue #651 [1] for details.
        #
        # [1] <https://github.com/urllib3/urllib3/issues/651>
        release_this_conn = release_conn
    
        http_tunnel_required = connection_requires_http_tunnel(
            self.proxy, self.proxy_config, destination_scheme
        )
    
        # Merge the proxy headers. Only done when not using HTTP CONNECT. We
        # have to copy the headers dict so we can safely change it without those
        # changes being reflected in anyone else's copy.
        if not http_tunnel_required:
            headers = headers.copy()
            headers.update(self.proxy_headers)
    
        # Must keep the exception bound to a separate variable or else Python 3
        # complains about UnboundLocalError.
        err = None
    
        # Keep track of whether we cleanly exited the except block. This
        # ensures we do proper cleanup in finally.
        clean_exit = False
    
        # Rewind body position, if needed. Record current position
        # for future rewinds in the event of a redirect/retry.
        body_pos = set_file_position(body, body_pos)
    
        try:
            # Request a connection from the queue.
            timeout_obj = self._get_timeout(timeout)
            conn = self._get_conn(timeout=pool_timeout)
    
            conn.timeout = timeout_obj.connect_timeout
    
            is_new_proxy_conn = self.proxy is not None and not getattr(
                conn, "sock", None
            )
            if is_new_proxy_conn and http_tunnel_required:
                self._prepare_proxy(conn)
    
            # Make the request on the httplib connection object.
>           httplib_response = self._make_request(
                conn,
                method,
                url,
                timeout=timeout_obj,
                body=body,
                headers=headers,
                chunked=chunked,
            )

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py:699: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754a4321f0>
conn = <urllib3.connection.HTTPSConnection object at 0x7f754a591460>
method = 'POST'
url = '/api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf'
timeout = Timeout(connect=None, read=None, total=None), chunked = False
httplib_request_kw = {'body': b'{"from": 0, "size": 0, "aggregations": {"organ": {"terms": {"field": "anatomy.organ.name.aggregate", "size"...p, deflate', 'Accept': '*/*', 'Connection': 'keep-alive', 'Content-Length': '164', 'Content-Type': 'application/json'}}
timeout_obj = Timeout(connect=None, read=None, total=None)

    def _make_request(
        self, conn, method, url, timeout=_Default, chunked=False, **httplib_request_kw
    ):
        """
        Perform a request on a given urllib connection object taken from our
        pool.
    
        :param conn:
            a connection from one of our connection pools
    
        :param timeout:
            Socket timeout in seconds for the request. This can be a
            float or integer, which will set the same timeout value for
            the socket connect and the socket read, or an instance of
            :class:`urllib3.util.Timeout`, which gives you more fine-grained
            control over your timeouts.
        """
        self.num_requests += 1
    
        timeout_obj = self._get_timeout(timeout)
        timeout_obj.start_connect()
        conn.timeout = timeout_obj.connect_timeout
    
        # Trigger any extra validation we need to do.
        try:
>           self._validate_conn(conn)

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py:382: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754a4321f0>
conn = <urllib3.connection.HTTPSConnection object at 0x7f754a591460>

    def _validate_conn(self, conn):
        """
        Called right before a request is made, after the socket is created.
        """
        super(HTTPSConnectionPool, self)._validate_conn(conn)
    
        # Force connect early to allow us to validate the connection.
        if not getattr(conn, "sock", None):  # AppEngine might not have  `.sock`
>           conn.connect()

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py:1010: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connection.HTTPSConnection object at 0x7f754a591460>

    def connect(self):
        # Add certificate verification
>       conn = self._new_conn()

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connection.py:353: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connection.HTTPSConnection object at 0x7f754a591460>

    def _new_conn(self):
        """Establish a socket connection and set nodelay settings on it.
    
        :return: New socket connection.
        """
        extra_kw = {}
        if self.source_address:
            extra_kw["source_address"] = self.source_address
    
        if self.socket_options:
            extra_kw["socket_options"] = self.socket_options
    
        try:
            conn = connection.create_connection(
                (self._dns_host, self.port), self.timeout, **extra_kw
            )
    
        except SocketTimeout:
            raise ConnectTimeoutError(
                self,
                "Connection to %s timed out. (connect timeout=%s)"
                % (self.host, self.timeout),
            )
    
        except SocketError as e:
>           raise NewConnectionError(
                self, "Failed to establish a new connection: %s" % e
            )
E           urllib3.exceptions.NewConnectionError: <urllib3.connection.HTTPSConnection object at 0x7f754a591460>: Failed to establish a new connection: [Errno 110] Connection timed out

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connection.py:181: NewConnectionError

During handling of the above exception, another exception occurred:

self = <requests.adapters.HTTPAdapter object at 0x7f754a4324f0>
request = <PreparedRequest [POST]>, stream = False
timeout = Timeout(connect=None, read=None, total=None), verify = True
cert = None, proxies = OrderedDict()

    def send(self, request, stream=False, timeout=None, verify=True, cert=None, proxies=None):
        """Sends PreparedRequest object. Returns Response object.
    
        :param request: The :class:`PreparedRequest <PreparedRequest>` being sent.
        :param stream: (optional) Whether to stream the request content.
        :param timeout: (optional) How long to wait for the server to send
            data before giving up, as a float, or a :ref:`(connect timeout,
            read timeout) <timeouts>` tuple.
        :type timeout: float or tuple or urllib3 Timeout object
        :param verify: (optional) Either a boolean, in which case it controls whether
            we verify the server's TLS certificate, or a string, in which case it
            must be a path to a CA bundle to use
        :param cert: (optional) Any user-provided SSL certificate to be trusted.
        :param proxies: (optional) The proxies dictionary to apply to the request.
        :rtype: requests.Response
        """
    
        try:
            conn = self.get_connection(request.url, proxies)
        except LocationValueError as e:
            raise InvalidURL(e, request=request)
    
        self.cert_verify(conn, request.url, verify, cert)
        url = self.request_url(request, proxies)
        self.add_headers(request, stream=stream, timeout=timeout, verify=verify, cert=cert, proxies=proxies)
    
        chunked = not (request.body is None or 'Content-Length' in request.headers)
    
        if isinstance(timeout, tuple):
            try:
                connect, read = timeout
                timeout = TimeoutSauce(connect=connect, read=read)
            except ValueError as e:
                # this may raise a string formatting error.
                err = ("Invalid timeout {}. Pass a (connect, read) "
                       "timeout tuple, or a single float to set "
                       "both timeouts to the same value".format(timeout))
                raise ValueError(err)
        elif isinstance(timeout, TimeoutSauce):
            pass
        else:
            timeout = TimeoutSauce(connect=timeout, read=timeout)
    
        try:
            if not chunked:
>               resp = conn.urlopen(
                    method=request.method,
                    url=url,
                    body=request.body,
                    headers=request.headers,
                    redirect=False,
                    assert_same_host=False,
                    preload_content=False,
                    decode_content=False,
                    retries=self.max_retries,
                    timeout=timeout
                )

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/adapters.py:439: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754a4321f0>
method = 'POST'
url = '/api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf'
body = b'{"from": 0, "size": 0, "aggregations": {"organ": {"terms": {"field": "anatomy.organ.name.aggregate", "size": 200, "order": [{"_count": "desc"}, {"_key": "asc"}]}}}}'
headers = {'User-Agent': 'python-requests/2.25.1', 'Accept-Encoding': 'gzip, deflate', 'Accept': '*/*', 'Connection': 'keep-alive', 'Content-Length': '164', 'Content-Type': 'application/json'}
retries = Retry(total=0, connect=None, read=False, redirect=None, status=None)
redirect = False, assert_same_host = False
timeout = Timeout(connect=None, read=None, total=None), pool_timeout = None
release_conn = False, chunked = False, body_pos = None
response_kw = {'decode_content': False, 'preload_content': False}
parsed_url = Url(scheme=None, auth=None, host=None, port=None, path='/api/1/elastic/SPARC_PortalDatasets_dev/_search', query='api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf', fragment=None)
destination_scheme = None, conn = None, release_this_conn = True
http_tunnel_required = False, err = None, clean_exit = False

    def urlopen(
        self,
        method,
        url,
        body=None,
        headers=None,
        retries=None,
        redirect=True,
        assert_same_host=True,
        timeout=_Default,
        pool_timeout=None,
        release_conn=None,
        chunked=False,
        body_pos=None,
        **response_kw
    ):
        """
        Get a connection from the pool and perform an HTTP request. This is the
        lowest level call for making a request, so you'll need to specify all
        the raw details.
    
        .. note::
    
           More commonly, it's appropriate to use a convenience method provided
           by :class:`.RequestMethods`, such as :meth:`request`.
    
        .. note::
    
           `release_conn` will only behave as expected if
           `preload_content=False` because we want to make
           `preload_content=False` the default behaviour someday soon without
           breaking backwards compatibility.
    
        :param method:
            HTTP request method (such as GET, POST, PUT, etc.)
    
        :param url:
            The URL to perform the request on.
    
        :param body:
            Data to send in the request body, either :class:`str`, :class:`bytes`,
            an iterable of :class:`str`/:class:`bytes`, or a file-like object.
    
        :param headers:
            Dictionary of custom headers to send, such as User-Agent,
            If-None-Match, etc. If None, pool headers are used. If provided,
            these headers completely replace any pool-specific headers.
    
        :param retries:
            Configure the number of retries to allow before raising a
            :class:`~urllib3.exceptions.MaxRetryError` exception.
    
            Pass ``None`` to retry until you receive a response. Pass a
            :class:`~urllib3.util.retry.Retry` object for fine-grained control
            over different types of retries.
            Pass an integer number to retry connection errors that many times,
            but no other types of errors. Pass zero to never retry.
    
            If ``False``, then retries are disabled and any exception is raised
            immediately. Also, instead of raising a MaxRetryError on redirects,
            the redirect response will be returned.
    
        :type retries: :class:`~urllib3.util.retry.Retry`, False, or an int.
    
        :param redirect:
            If True, automatically handle redirects (status codes 301, 302,
            303, 307, 308). Each redirect counts as a retry. Disabling retries
            will disable redirect, too.
    
        :param assert_same_host:
            If ``True``, will make sure that the host of the pool requests is
            consistent else will raise HostChangedError. When ``False``, you can
            use the pool on an HTTP proxy and request foreign hosts.
    
        :param timeout:
            If specified, overrides the default timeout for this one
            request. It may be a float (in seconds) or an instance of
            :class:`urllib3.util.Timeout`.
    
        :param pool_timeout:
            If set and the pool is set to block=True, then this method will
            block for ``pool_timeout`` seconds and raise EmptyPoolError if no
            connection is available within the time period.
    
        :param release_conn:
            If False, then the urlopen call will not release the connection
            back into the pool once a response is received (but will release if
            you read the entire contents of the response such as when
            `preload_content=True`). This is useful if you're not preloading
            the response's content immediately. You will need to call
            ``r.release_conn()`` on the response ``r`` to return the connection
            back into the pool. If None, it takes the value of
            ``response_kw.get('preload_content', True)``.
    
        :param chunked:
            If True, urllib3 will send the body using chunked transfer
            encoding. Otherwise, urllib3 will send the body using the standard
            content-length form. Defaults to False.
    
        :param int body_pos:
            Position to seek to in file-like body in the event of a retry or
            redirect. Typically this won't need to be set because urllib3 will
            auto-populate the value when needed.
    
        :param \\**response_kw:
            Additional parameters are passed to
            :meth:`urllib3.response.HTTPResponse.from_httplib`
        """
    
        parsed_url = parse_url(url)
        destination_scheme = parsed_url.scheme
    
        if headers is None:
            headers = self.headers
    
        if not isinstance(retries, Retry):
            retries = Retry.from_int(retries, redirect=redirect, default=self.retries)
    
        if release_conn is None:
            release_conn = response_kw.get("preload_content", True)
    
        # Check host
        if assert_same_host and not self.is_same_host(url):
            raise HostChangedError(self, url, retries)
    
        # Ensure that the URL we're connecting to is properly encoded
        if url.startswith("/"):
            url = six.ensure_str(_encode_target(url))
        else:
            url = six.ensure_str(parsed_url.url)
    
        conn = None
    
        # Track whether `conn` needs to be released before
        # returning/raising/recursing. Update this variable if necessary, and
        # leave `release_conn` constant throughout the function. That way, if
        # the function recurses, the original value of `release_conn` will be
        # passed down into the recursive call, and its value will be respected.
        #
        # See issue #651 [1] for details.
        #
        # [1] <https://github.com/urllib3/urllib3/issues/651>
        release_this_conn = release_conn
    
        http_tunnel_required = connection_requires_http_tunnel(
            self.proxy, self.proxy_config, destination_scheme
        )
    
        # Merge the proxy headers. Only done when not using HTTP CONNECT. We
        # have to copy the headers dict so we can safely change it without those
        # changes being reflected in anyone else's copy.
        if not http_tunnel_required:
            headers = headers.copy()
            headers.update(self.proxy_headers)
    
        # Must keep the exception bound to a separate variable or else Python 3
        # complains about UnboundLocalError.
        err = None
    
        # Keep track of whether we cleanly exited the except block. This
        # ensures we do proper cleanup in finally.
        clean_exit = False
    
        # Rewind body position, if needed. Record current position
        # for future rewinds in the event of a redirect/retry.
        body_pos = set_file_position(body, body_pos)
    
        try:
            # Request a connection from the queue.
            timeout_obj = self._get_timeout(timeout)
            conn = self._get_conn(timeout=pool_timeout)
    
            conn.timeout = timeout_obj.connect_timeout
    
            is_new_proxy_conn = self.proxy is not None and not getattr(
                conn, "sock", None
            )
            if is_new_proxy_conn and http_tunnel_required:
                self._prepare_proxy(conn)
    
            # Make the request on the httplib connection object.
            httplib_response = self._make_request(
                conn,
                method,
                url,
                timeout=timeout_obj,
                body=body,
                headers=headers,
                chunked=chunked,
            )
    
            # If we're going to release the connection in ``finally:``, then
            # the response doesn't need to know about the connection. Otherwise
            # it will also try to release it and we'll have a double-release
            # mess.
            response_conn = conn if not release_conn else None
    
            # Pass method to Response for length checking
            response_kw["request_method"] = method
    
            # Import httplib's response into our own wrapper object
            response = self.ResponseCls.from_httplib(
                httplib_response,
                pool=self,
                connection=response_conn,
                retries=retries,
                **response_kw
            )
    
            # Everything went great!
            clean_exit = True
    
        except EmptyPoolError:
            # Didn't get a connection from the pool, no need to clean up
            clean_exit = True
            release_this_conn = False
            raise
    
        except (
            TimeoutError,
            HTTPException,
            SocketError,
            ProtocolError,
            BaseSSLError,
            SSLError,
            CertificateError,
        ) as e:
            # Discard the connection for these exceptions. It will be
            # replaced during the next _get_conn() call.
            clean_exit = False
            if isinstance(e, (BaseSSLError, CertificateError)):
                e = SSLError(e)
            elif isinstance(e, (SocketError, NewConnectionError)) and self.proxy:
                e = ProxyError("Cannot connect to proxy.", e)
            elif isinstance(e, (SocketError, HTTPException)):
                e = ProtocolError("Connection aborted.", e)
    
>           retries = retries.increment(
                method, url, error=e, _pool=self, _stacktrace=sys.exc_info()[2]
            )

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py:755: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = Retry(total=0, connect=None, read=False, redirect=None, status=None)
method = 'POST'
url = '/api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf'
response = None
error = NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7f754a591460>: Failed to establish a new connection: [Errno 110] Connection timed out')
_pool = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754a4321f0>
_stacktrace = <traceback object at 0x7f754a70c800>

    def increment(
        self,
        method=None,
        url=None,
        response=None,
        error=None,
        _pool=None,
        _stacktrace=None,
    ):
        """Return a new Retry object with incremented retry counters.
    
        :param response: A response object, or None, if the server did not
            return a response.
        :type response: :class:`~urllib3.response.HTTPResponse`
        :param Exception error: An error encountered during the request, or
            None if the response was received successfully.
    
        :return: A new ``Retry`` object.
        """
        if self.total is False and error:
            # Disabled, indicate to re-raise the error.
            raise six.reraise(type(error), error, _stacktrace)
    
        total = self.total
        if total is not None:
            total -= 1
    
        connect = self.connect
        read = self.read
        redirect = self.redirect
        status_count = self.status
        other = self.other
        cause = "unknown"
        status = None
        redirect_location = None
    
        if error and self._is_connection_error(error):
            # Connect retry?
            if connect is False:
                raise six.reraise(type(error), error, _stacktrace)
            elif connect is not None:
                connect -= 1
    
        elif error and self._is_read_error(error):
            # Read retry?
            if read is False or not self._is_method_retryable(method):
                raise six.reraise(type(error), error, _stacktrace)
            elif read is not None:
                read -= 1
    
        elif error:
            # Other retry?
            if other is not None:
                other -= 1
    
        elif response and response.get_redirect_location():
            # Redirect retry?
            if redirect is not None:
                redirect -= 1
            cause = "too many redirects"
            redirect_location = response.get_redirect_location()
            status = response.status
    
        else:
            # Incrementing because of a server error like a 500 in
            # status_forcelist and the given method is in the allowed_methods
            cause = ResponseError.GENERIC_ERROR
            if response and response.status:
                if status_count is not None:
                    status_count -= 1
                cause = ResponseError.SPECIFIC_ERROR.format(status_code=response.status)
                status = response.status
    
        history = self.history + (
            RequestHistory(method, url, error, status, redirect_location),
        )
    
        new_retry = self.new(
            total=total,
            connect=connect,
            read=read,
            redirect=redirect,
            status=status_count,
            other=other,
            history=history,
        )
    
        if new_retry.is_exhausted():
>           raise MaxRetryError(_pool, url, error or ResponseError(cause))
E           urllib3.exceptions.MaxRetryError: HTTPSConnectionPool(host='scicrunch.org', port=443): Max retries exceeded with url: /api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7f754a591460>: Failed to establish a new connection: [Errno 110] Connection timed out'))

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/util/retry.py:574: MaxRetryError

During handling of the above exception, another exception occurred:

client = <FlaskClient <Flask 'app.main'>>

    def test_getting_facets(client):
>       r = client.get('/get-facets/organ')

tests/test_scicrunch.py:152: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/werkzeug/test.py:1029: in get
    return self.open(*args, **kw)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/testing.py:222: in open
    return Client.open(
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/werkzeug/test.py:993: in open
    response = self.run_wsgi_app(environ.copy(), buffered=buffered)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/werkzeug/test.py:884: in run_wsgi_app
    rv = run_wsgi_app(self.application, environ, buffered=buffered)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/werkzeug/test.py:1119: in run_wsgi_app
    app_rv = app(environ, start_response)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:2463: in __call__
    return self.wsgi_app(environ, start_response)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:2449: in wsgi_app
    response = self.handle_exception(e)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask_cors/extension.py:161: in wrapped_function
    return cors_after_request(app.make_response(f(*args, **kwargs)))
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1866: in handle_exception
    reraise(exc_type, exc_value, tb)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/_compat.py:39: in reraise
    raise value
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:2446: in wsgi_app
    response = self.full_dispatch_request()
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1951: in full_dispatch_request
    rv = self.handle_user_exception(e)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask_cors/extension.py:161: in wrapped_function
    return cors_after_request(app.make_response(f(*args, **kwargs)))
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1820: in handle_user_exception
    reraise(exc_type, exc_value, tb)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/_compat.py:39: in reraise
    raise value
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1949: in full_dispatch_request
    rv = self.dispatch_request()
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1935: in dispatch_request
    return self.view_functions[rule.endpoint](**req.view_args)
app/main.py:730: in get_facets
    response = requests.post(
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/api.py:119: in post
    return request('post', url, data=data, json=json, **kwargs)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/api.py:61: in request
    return session.request(method=method, url=url, **kwargs)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/sessions.py:542: in request
    resp = self.send(prep, **send_kwargs)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/sessions.py:655: in send
    r = adapter.send(request, **kwargs)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <requests.adapters.HTTPAdapter object at 0x7f754a4324f0>
request = <PreparedRequest [POST]>, stream = False
timeout = Timeout(connect=None, read=None, total=None), verify = True
cert = None, proxies = OrderedDict()

    def send(self, request, stream=False, timeout=None, verify=True, cert=None, proxies=None):
        """Sends PreparedRequest object. Returns Response object.
    
        :param request: The :class:`PreparedRequest <PreparedRequest>` being sent.
        :param stream: (optional) Whether to stream the request content.
        :param timeout: (optional) How long to wait for the server to send
            data before giving up, as a float, or a :ref:`(connect timeout,
            read timeout) <timeouts>` tuple.
        :type timeout: float or tuple or urllib3 Timeout object
        :param verify: (optional) Either a boolean, in which case it controls whether
            we verify the server's TLS certificate, or a string, in which case it
            must be a path to a CA bundle to use
        :param cert: (optional) Any user-provided SSL certificate to be trusted.
        :param proxies: (optional) The proxies dictionary to apply to the request.
        :rtype: requests.Response
        """
    
        try:
            conn = self.get_connection(request.url, proxies)
        except LocationValueError as e:
            raise InvalidURL(e, request=request)
    
        self.cert_verify(conn, request.url, verify, cert)
        url = self.request_url(request, proxies)
        self.add_headers(request, stream=stream, timeout=timeout, verify=verify, cert=cert, proxies=proxies)
    
        chunked = not (request.body is None or 'Content-Length' in request.headers)
    
        if isinstance(timeout, tuple):
            try:
                connect, read = timeout
                timeout = TimeoutSauce(connect=connect, read=read)
            except ValueError as e:
                # this may raise a string formatting error.
                err = ("Invalid timeout {}. Pass a (connect, read) "
                       "timeout tuple, or a single float to set "
                       "both timeouts to the same value".format(timeout))
                raise ValueError(err)
        elif isinstance(timeout, TimeoutSauce):
            pass
        else:
            timeout = TimeoutSauce(connect=timeout, read=timeout)
    
        try:
            if not chunked:
                resp = conn.urlopen(
                    method=request.method,
                    url=url,
                    body=request.body,
                    headers=request.headers,
                    redirect=False,
                    assert_same_host=False,
                    preload_content=False,
                    decode_content=False,
                    retries=self.max_retries,
                    timeout=timeout
                )
    
            # Send the request.
            else:
                if hasattr(conn, 'proxy_pool'):
                    conn = conn.proxy_pool
    
                low_conn = conn._get_conn(timeout=DEFAULT_POOL_TIMEOUT)
    
                try:
                    low_conn.putrequest(request.method,
                                        url,
                                        skip_accept_encoding=True)
    
                    for header, value in request.headers.items():
                        low_conn.putheader(header, value)
    
                    low_conn.endheaders()
    
                    for i in request.body:
                        low_conn.send(hex(len(i))[2:].encode('utf-8'))
                        low_conn.send(b'\r\n')
                        low_conn.send(i)
                        low_conn.send(b'\r\n')
                    low_conn.send(b'0\r\n\r\n')
    
                    # Receive the response from the server
                    try:
                        # For Python 2.7, use buffering of HTTP responses
                        r = low_conn.getresponse(buffering=True)
                    except TypeError:
                        # For compatibility with Python 3.3+
                        r = low_conn.getresponse()
    
                    resp = HTTPResponse.from_httplib(
                        r,
                        pool=conn,
                        connection=low_conn,
                        preload_content=False,
                        decode_content=False
                    )
                except:
                    # If we hit any problems here, clean up the connection.
                    # Then, reraise so that we can handle the actual exception.
                    low_conn.close()
                    raise
    
        except (ProtocolError, socket.error) as err:
            raise ConnectionError(err, request=request)
    
        except MaxRetryError as e:
            if isinstance(e.reason, ConnectTimeoutError):
                # TODO: Remove this in 3.0.0: see #2811
                if not isinstance(e.reason, NewConnectionError):
                    raise ConnectTimeout(e, request=request)
    
            if isinstance(e.reason, ResponseError):
                raise RetryError(e, request=request)
    
            if isinstance(e.reason, _ProxyError):
                raise ProxyError(e, request=request)
    
            if isinstance(e.reason, _SSLError):
                # This branch is for urllib3 v1.22 and later.
                raise SSLError(e, request=request)
    
>           raise ConnectionError(e, request=request)
E           requests.exceptions.ConnectionError: HTTPSConnectionPool(host='scicrunch.org', port=443): Max retries exceeded with url: /api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7f754a591460>: Failed to establish a new connection: [Errno 110] Connection timed out'))

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/adapters.py:516: ConnectionError
_________________________ test_create_identifier_query _________________________

self = <urllib3.connection.HTTPSConnection object at 0x7f754a382220>

    def _new_conn(self):
        """Establish a socket connection and set nodelay settings on it.
    
        :return: New socket connection.
        """
        extra_kw = {}
        if self.source_address:
            extra_kw["source_address"] = self.source_address
    
        if self.socket_options:
            extra_kw["socket_options"] = self.socket_options
    
        try:
>           conn = connection.create_connection(
                (self._dns_host, self.port), self.timeout, **extra_kw
            )

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connection.py:169: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

address = ('scicrunch.org', 443), timeout = None, source_address = None
socket_options = [(6, 1, 1)]

    def create_connection(
        address,
        timeout=socket._GLOBAL_DEFAULT_TIMEOUT,
        source_address=None,
        socket_options=None,
    ):
        """Connect to *address* and return the socket object.
    
        Convenience function.  Connect to *address* (a 2-tuple ``(host,
        port)``) and return the socket object.  Passing the optional
        *timeout* parameter will set the timeout on the socket instance
        before attempting to connect.  If no *timeout* is supplied, the
        global default timeout setting returned by :func:`socket.getdefaulttimeout`
        is used.  If *source_address* is set it must be a tuple of (host, port)
        for the socket to bind as a source address before making the connection.
        An host of '' or port 0 tells the OS to use the default.
        """
    
        host, port = address
        if host.startswith("["):
            host = host.strip("[]")
        err = None
    
        # Using the value from allowed_gai_family() in the context of getaddrinfo lets
        # us select whether to work with IPv4 DNS records, IPv6 records, or both.
        # The original create_connection function always returns all records.
        family = allowed_gai_family()
    
        try:
            host.encode("idna")
        except UnicodeError:
            return six.raise_from(
                LocationParseError(u"'%s', label empty or too long" % host), None
            )
    
        for res in socket.getaddrinfo(host, port, family, socket.SOCK_STREAM):
            af, socktype, proto, canonname, sa = res
            sock = None
            try:
                sock = socket.socket(af, socktype, proto)
    
                # If provided, set socket level options before connecting.
                _set_socket_options(sock, socket_options)
    
                if timeout is not socket._GLOBAL_DEFAULT_TIMEOUT:
                    sock.settimeout(timeout)
                if source_address:
                    sock.bind(source_address)
                sock.connect(sa)
                return sock
    
            except socket.error as e:
                err = e
                if sock is not None:
                    sock.close()
                    sock = None
    
        if err is not None:
>           raise err

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/util/connection.py:96: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

address = ('scicrunch.org', 443), timeout = None, source_address = None
socket_options = [(6, 1, 1)]

    def create_connection(
        address,
        timeout=socket._GLOBAL_DEFAULT_TIMEOUT,
        source_address=None,
        socket_options=None,
    ):
        """Connect to *address* and return the socket object.
    
        Convenience function.  Connect to *address* (a 2-tuple ``(host,
        port)``) and return the socket object.  Passing the optional
        *timeout* parameter will set the timeout on the socket instance
        before attempting to connect.  If no *timeout* is supplied, the
        global default timeout setting returned by :func:`socket.getdefaulttimeout`
        is used.  If *source_address* is set it must be a tuple of (host, port)
        for the socket to bind as a source address before making the connection.
        An host of '' or port 0 tells the OS to use the default.
        """
    
        host, port = address
        if host.startswith("["):
            host = host.strip("[]")
        err = None
    
        # Using the value from allowed_gai_family() in the context of getaddrinfo lets
        # us select whether to work with IPv4 DNS records, IPv6 records, or both.
        # The original create_connection function always returns all records.
        family = allowed_gai_family()
    
        try:
            host.encode("idna")
        except UnicodeError:
            return six.raise_from(
                LocationParseError(u"'%s', label empty or too long" % host), None
            )
    
        for res in socket.getaddrinfo(host, port, family, socket.SOCK_STREAM):
            af, socktype, proto, canonname, sa = res
            sock = None
            try:
                sock = socket.socket(af, socktype, proto)
    
                # If provided, set socket level options before connecting.
                _set_socket_options(sock, socket_options)
    
                if timeout is not socket._GLOBAL_DEFAULT_TIMEOUT:
                    sock.settimeout(timeout)
                if source_address:
                    sock.bind(source_address)
>               sock.connect(sa)
E               TimeoutError: [Errno 110] Connection timed out

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/util/connection.py:86: TimeoutError

During handling of the above exception, another exception occurred:

self = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754a3829d0>
method = 'POST'
url = '/api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf'
body = b'{"size": 10, "from": 0, "query": {"query_string": {"fields": ["*identifier"], "query": "*e6435710-dd9c-46b7-9dfd-932103469733"}}}'
headers = {'User-Agent': 'python-requests/2.25.1', 'Accept-Encoding': 'gzip, deflate', 'Accept': '*/*', 'Connection': 'keep-alive', 'Content-Length': '129', 'Content-Type': 'application/json'}
retries = Retry(total=0, connect=None, read=False, redirect=None, status=None)
redirect = False, assert_same_host = False
timeout = Timeout(connect=None, read=None, total=None), pool_timeout = None
release_conn = False, chunked = False, body_pos = None
response_kw = {'decode_content': False, 'preload_content': False}
parsed_url = Url(scheme=None, auth=None, host=None, port=None, path='/api/1/elastic/SPARC_PortalDatasets_dev/_search', query='api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf', fragment=None)
destination_scheme = None, conn = None, release_this_conn = True
http_tunnel_required = False, err = None, clean_exit = False

    def urlopen(
        self,
        method,
        url,
        body=None,
        headers=None,
        retries=None,
        redirect=True,
        assert_same_host=True,
        timeout=_Default,
        pool_timeout=None,
        release_conn=None,
        chunked=False,
        body_pos=None,
        **response_kw
    ):
        """
        Get a connection from the pool and perform an HTTP request. This is the
        lowest level call for making a request, so you'll need to specify all
        the raw details.
    
        .. note::
    
           More commonly, it's appropriate to use a convenience method provided
           by :class:`.RequestMethods`, such as :meth:`request`.
    
        .. note::
    
           `release_conn` will only behave as expected if
           `preload_content=False` because we want to make
           `preload_content=False` the default behaviour someday soon without
           breaking backwards compatibility.
    
        :param method:
            HTTP request method (such as GET, POST, PUT, etc.)
    
        :param url:
            The URL to perform the request on.
    
        :param body:
            Data to send in the request body, either :class:`str`, :class:`bytes`,
            an iterable of :class:`str`/:class:`bytes`, or a file-like object.
    
        :param headers:
            Dictionary of custom headers to send, such as User-Agent,
            If-None-Match, etc. If None, pool headers are used. If provided,
            these headers completely replace any pool-specific headers.
    
        :param retries:
            Configure the number of retries to allow before raising a
            :class:`~urllib3.exceptions.MaxRetryError` exception.
    
            Pass ``None`` to retry until you receive a response. Pass a
            :class:`~urllib3.util.retry.Retry` object for fine-grained control
            over different types of retries.
            Pass an integer number to retry connection errors that many times,
            but no other types of errors. Pass zero to never retry.
    
            If ``False``, then retries are disabled and any exception is raised
            immediately. Also, instead of raising a MaxRetryError on redirects,
            the redirect response will be returned.
    
        :type retries: :class:`~urllib3.util.retry.Retry`, False, or an int.
    
        :param redirect:
            If True, automatically handle redirects (status codes 301, 302,
            303, 307, 308). Each redirect counts as a retry. Disabling retries
            will disable redirect, too.
    
        :param assert_same_host:
            If ``True``, will make sure that the host of the pool requests is
            consistent else will raise HostChangedError. When ``False``, you can
            use the pool on an HTTP proxy and request foreign hosts.
    
        :param timeout:
            If specified, overrides the default timeout for this one
            request. It may be a float (in seconds) or an instance of
            :class:`urllib3.util.Timeout`.
    
        :param pool_timeout:
            If set and the pool is set to block=True, then this method will
            block for ``pool_timeout`` seconds and raise EmptyPoolError if no
            connection is available within the time period.
    
        :param release_conn:
            If False, then the urlopen call will not release the connection
            back into the pool once a response is received (but will release if
            you read the entire contents of the response such as when
            `preload_content=True`). This is useful if you're not preloading
            the response's content immediately. You will need to call
            ``r.release_conn()`` on the response ``r`` to return the connection
            back into the pool. If None, it takes the value of
            ``response_kw.get('preload_content', True)``.
    
        :param chunked:
            If True, urllib3 will send the body using chunked transfer
            encoding. Otherwise, urllib3 will send the body using the standard
            content-length form. Defaults to False.
    
        :param int body_pos:
            Position to seek to in file-like body in the event of a retry or
            redirect. Typically this won't need to be set because urllib3 will
            auto-populate the value when needed.
    
        :param \\**response_kw:
            Additional parameters are passed to
            :meth:`urllib3.response.HTTPResponse.from_httplib`
        """
    
        parsed_url = parse_url(url)
        destination_scheme = parsed_url.scheme
    
        if headers is None:
            headers = self.headers
    
        if not isinstance(retries, Retry):
            retries = Retry.from_int(retries, redirect=redirect, default=self.retries)
    
        if release_conn is None:
            release_conn = response_kw.get("preload_content", True)
    
        # Check host
        if assert_same_host and not self.is_same_host(url):
            raise HostChangedError(self, url, retries)
    
        # Ensure that the URL we're connecting to is properly encoded
        if url.startswith("/"):
            url = six.ensure_str(_encode_target(url))
        else:
            url = six.ensure_str(parsed_url.url)
    
        conn = None
    
        # Track whether `conn` needs to be released before
        # returning/raising/recursing. Update this variable if necessary, and
        # leave `release_conn` constant throughout the function. That way, if
        # the function recurses, the original value of `release_conn` will be
        # passed down into the recursive call, and its value will be respected.
        #
        # See issue #651 [1] for details.
        #
        # [1] <https://github.com/urllib3/urllib3/issues/651>
        release_this_conn = release_conn
    
        http_tunnel_required = connection_requires_http_tunnel(
            self.proxy, self.proxy_config, destination_scheme
        )
    
        # Merge the proxy headers. Only done when not using HTTP CONNECT. We
        # have to copy the headers dict so we can safely change it without those
        # changes being reflected in anyone else's copy.
        if not http_tunnel_required:
            headers = headers.copy()
            headers.update(self.proxy_headers)
    
        # Must keep the exception bound to a separate variable or else Python 3
        # complains about UnboundLocalError.
        err = None
    
        # Keep track of whether we cleanly exited the except block. This
        # ensures we do proper cleanup in finally.
        clean_exit = False
    
        # Rewind body position, if needed. Record current position
        # for future rewinds in the event of a redirect/retry.
        body_pos = set_file_position(body, body_pos)
    
        try:
            # Request a connection from the queue.
            timeout_obj = self._get_timeout(timeout)
            conn = self._get_conn(timeout=pool_timeout)
    
            conn.timeout = timeout_obj.connect_timeout
    
            is_new_proxy_conn = self.proxy is not None and not getattr(
                conn, "sock", None
            )
            if is_new_proxy_conn and http_tunnel_required:
                self._prepare_proxy(conn)
    
            # Make the request on the httplib connection object.
>           httplib_response = self._make_request(
                conn,
                method,
                url,
                timeout=timeout_obj,
                body=body,
                headers=headers,
                chunked=chunked,
            )

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py:699: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754a3829d0>
conn = <urllib3.connection.HTTPSConnection object at 0x7f754a382220>
method = 'POST'
url = '/api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf'
timeout = Timeout(connect=None, read=None, total=None), chunked = False
httplib_request_kw = {'body': b'{"size": 10, "from": 0, "query": {"query_string": {"fields": ["*identifier"], "query": "*e6435710-dd9c-46b7...p, deflate', 'Accept': '*/*', 'Connection': 'keep-alive', 'Content-Length': '129', 'Content-Type': 'application/json'}}
timeout_obj = Timeout(connect=None, read=None, total=None)

    def _make_request(
        self, conn, method, url, timeout=_Default, chunked=False, **httplib_request_kw
    ):
        """
        Perform a request on a given urllib connection object taken from our
        pool.
    
        :param conn:
            a connection from one of our connection pools
    
        :param timeout:
            Socket timeout in seconds for the request. This can be a
            float or integer, which will set the same timeout value for
            the socket connect and the socket read, or an instance of
            :class:`urllib3.util.Timeout`, which gives you more fine-grained
            control over your timeouts.
        """
        self.num_requests += 1
    
        timeout_obj = self._get_timeout(timeout)
        timeout_obj.start_connect()
        conn.timeout = timeout_obj.connect_timeout
    
        # Trigger any extra validation we need to do.
        try:
>           self._validate_conn(conn)

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py:382: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754a3829d0>
conn = <urllib3.connection.HTTPSConnection object at 0x7f754a382220>

    def _validate_conn(self, conn):
        """
        Called right before a request is made, after the socket is created.
        """
        super(HTTPSConnectionPool, self)._validate_conn(conn)
    
        # Force connect early to allow us to validate the connection.
        if not getattr(conn, "sock", None):  # AppEngine might not have  `.sock`
>           conn.connect()

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py:1010: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connection.HTTPSConnection object at 0x7f754a382220>

    def connect(self):
        # Add certificate verification
>       conn = self._new_conn()

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connection.py:353: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connection.HTTPSConnection object at 0x7f754a382220>

    def _new_conn(self):
        """Establish a socket connection and set nodelay settings on it.
    
        :return: New socket connection.
        """
        extra_kw = {}
        if self.source_address:
            extra_kw["source_address"] = self.source_address
    
        if self.socket_options:
            extra_kw["socket_options"] = self.socket_options
    
        try:
            conn = connection.create_connection(
                (self._dns_host, self.port), self.timeout, **extra_kw
            )
    
        except SocketTimeout:
            raise ConnectTimeoutError(
                self,
                "Connection to %s timed out. (connect timeout=%s)"
                % (self.host, self.timeout),
            )
    
        except SocketError as e:
>           raise NewConnectionError(
                self, "Failed to establish a new connection: %s" % e
            )
E           urllib3.exceptions.NewConnectionError: <urllib3.connection.HTTPSConnection object at 0x7f754a382220>: Failed to establish a new connection: [Errno 110] Connection timed out

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connection.py:181: NewConnectionError

During handling of the above exception, another exception occurred:

self = <requests.adapters.HTTPAdapter object at 0x7f754a6ee0a0>
request = <PreparedRequest [POST]>, stream = False
timeout = Timeout(connect=None, read=None, total=None), verify = True
cert = None, proxies = OrderedDict()

    def send(self, request, stream=False, timeout=None, verify=True, cert=None, proxies=None):
        """Sends PreparedRequest object. Returns Response object.
    
        :param request: The :class:`PreparedRequest <PreparedRequest>` being sent.
        :param stream: (optional) Whether to stream the request content.
        :param timeout: (optional) How long to wait for the server to send
            data before giving up, as a float, or a :ref:`(connect timeout,
            read timeout) <timeouts>` tuple.
        :type timeout: float or tuple or urllib3 Timeout object
        :param verify: (optional) Either a boolean, in which case it controls whether
            we verify the server's TLS certificate, or a string, in which case it
            must be a path to a CA bundle to use
        :param cert: (optional) Any user-provided SSL certificate to be trusted.
        :param proxies: (optional) The proxies dictionary to apply to the request.
        :rtype: requests.Response
        """
    
        try:
            conn = self.get_connection(request.url, proxies)
        except LocationValueError as e:
            raise InvalidURL(e, request=request)
    
        self.cert_verify(conn, request.url, verify, cert)
        url = self.request_url(request, proxies)
        self.add_headers(request, stream=stream, timeout=timeout, verify=verify, cert=cert, proxies=proxies)
    
        chunked = not (request.body is None or 'Content-Length' in request.headers)
    
        if isinstance(timeout, tuple):
            try:
                connect, read = timeout
                timeout = TimeoutSauce(connect=connect, read=read)
            except ValueError as e:
                # this may raise a string formatting error.
                err = ("Invalid timeout {}. Pass a (connect, read) "
                       "timeout tuple, or a single float to set "
                       "both timeouts to the same value".format(timeout))
                raise ValueError(err)
        elif isinstance(timeout, TimeoutSauce):
            pass
        else:
            timeout = TimeoutSauce(connect=timeout, read=timeout)
    
        try:
            if not chunked:
>               resp = conn.urlopen(
                    method=request.method,
                    url=url,
                    body=request.body,
                    headers=request.headers,
                    redirect=False,
                    assert_same_host=False,
                    preload_content=False,
                    decode_content=False,
                    retries=self.max_retries,
                    timeout=timeout
                )

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/adapters.py:439: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754a3829d0>
method = 'POST'
url = '/api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf'
body = b'{"size": 10, "from": 0, "query": {"query_string": {"fields": ["*identifier"], "query": "*e6435710-dd9c-46b7-9dfd-932103469733"}}}'
headers = {'User-Agent': 'python-requests/2.25.1', 'Accept-Encoding': 'gzip, deflate', 'Accept': '*/*', 'Connection': 'keep-alive', 'Content-Length': '129', 'Content-Type': 'application/json'}
retries = Retry(total=0, connect=None, read=False, redirect=None, status=None)
redirect = False, assert_same_host = False
timeout = Timeout(connect=None, read=None, total=None), pool_timeout = None
release_conn = False, chunked = False, body_pos = None
response_kw = {'decode_content': False, 'preload_content': False}
parsed_url = Url(scheme=None, auth=None, host=None, port=None, path='/api/1/elastic/SPARC_PortalDatasets_dev/_search', query='api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf', fragment=None)
destination_scheme = None, conn = None, release_this_conn = True
http_tunnel_required = False, err = None, clean_exit = False

    def urlopen(
        self,
        method,
        url,
        body=None,
        headers=None,
        retries=None,
        redirect=True,
        assert_same_host=True,
        timeout=_Default,
        pool_timeout=None,
        release_conn=None,
        chunked=False,
        body_pos=None,
        **response_kw
    ):
        """
        Get a connection from the pool and perform an HTTP request. This is the
        lowest level call for making a request, so you'll need to specify all
        the raw details.
    
        .. note::
    
           More commonly, it's appropriate to use a convenience method provided
           by :class:`.RequestMethods`, such as :meth:`request`.
    
        .. note::
    
           `release_conn` will only behave as expected if
           `preload_content=False` because we want to make
           `preload_content=False` the default behaviour someday soon without
           breaking backwards compatibility.
    
        :param method:
            HTTP request method (such as GET, POST, PUT, etc.)
    
        :param url:
            The URL to perform the request on.
    
        :param body:
            Data to send in the request body, either :class:`str`, :class:`bytes`,
            an iterable of :class:`str`/:class:`bytes`, or a file-like object.
    
        :param headers:
            Dictionary of custom headers to send, such as User-Agent,
            If-None-Match, etc. If None, pool headers are used. If provided,
            these headers completely replace any pool-specific headers.
    
        :param retries:
            Configure the number of retries to allow before raising a
            :class:`~urllib3.exceptions.MaxRetryError` exception.
    
            Pass ``None`` to retry until you receive a response. Pass a
            :class:`~urllib3.util.retry.Retry` object for fine-grained control
            over different types of retries.
            Pass an integer number to retry connection errors that many times,
            but no other types of errors. Pass zero to never retry.
    
            If ``False``, then retries are disabled and any exception is raised
            immediately. Also, instead of raising a MaxRetryError on redirects,
            the redirect response will be returned.
    
        :type retries: :class:`~urllib3.util.retry.Retry`, False, or an int.
    
        :param redirect:
            If True, automatically handle redirects (status codes 301, 302,
            303, 307, 308). Each redirect counts as a retry. Disabling retries
            will disable redirect, too.
    
        :param assert_same_host:
            If ``True``, will make sure that the host of the pool requests is
            consistent else will raise HostChangedError. When ``False``, you can
            use the pool on an HTTP proxy and request foreign hosts.
    
        :param timeout:
            If specified, overrides the default timeout for this one
            request. It may be a float (in seconds) or an instance of
            :class:`urllib3.util.Timeout`.
    
        :param pool_timeout:
            If set and the pool is set to block=True, then this method will
            block for ``pool_timeout`` seconds and raise EmptyPoolError if no
            connection is available within the time period.
    
        :param release_conn:
            If False, then the urlopen call will not release the connection
            back into the pool once a response is received (but will release if
            you read the entire contents of the response such as when
            `preload_content=True`). This is useful if you're not preloading
            the response's content immediately. You will need to call
            ``r.release_conn()`` on the response ``r`` to return the connection
            back into the pool. If None, it takes the value of
            ``response_kw.get('preload_content', True)``.
    
        :param chunked:
            If True, urllib3 will send the body using chunked transfer
            encoding. Otherwise, urllib3 will send the body using the standard
            content-length form. Defaults to False.
    
        :param int body_pos:
            Position to seek to in file-like body in the event of a retry or
            redirect. Typically this won't need to be set because urllib3 will
            auto-populate the value when needed.
    
        :param \\**response_kw:
            Additional parameters are passed to
            :meth:`urllib3.response.HTTPResponse.from_httplib`
        """
    
        parsed_url = parse_url(url)
        destination_scheme = parsed_url.scheme
    
        if headers is None:
            headers = self.headers
    
        if not isinstance(retries, Retry):
            retries = Retry.from_int(retries, redirect=redirect, default=self.retries)
    
        if release_conn is None:
            release_conn = response_kw.get("preload_content", True)
    
        # Check host
        if assert_same_host and not self.is_same_host(url):
            raise HostChangedError(self, url, retries)
    
        # Ensure that the URL we're connecting to is properly encoded
        if url.startswith("/"):
            url = six.ensure_str(_encode_target(url))
        else:
            url = six.ensure_str(parsed_url.url)
    
        conn = None
    
        # Track whether `conn` needs to be released before
        # returning/raising/recursing. Update this variable if necessary, and
        # leave `release_conn` constant throughout the function. That way, if
        # the function recurses, the original value of `release_conn` will be
        # passed down into the recursive call, and its value will be respected.
        #
        # See issue #651 [1] for details.
        #
        # [1] <https://github.com/urllib3/urllib3/issues/651>
        release_this_conn = release_conn
    
        http_tunnel_required = connection_requires_http_tunnel(
            self.proxy, self.proxy_config, destination_scheme
        )
    
        # Merge the proxy headers. Only done when not using HTTP CONNECT. We
        # have to copy the headers dict so we can safely change it without those
        # changes being reflected in anyone else's copy.
        if not http_tunnel_required:
            headers = headers.copy()
            headers.update(self.proxy_headers)
    
        # Must keep the exception bound to a separate variable or else Python 3
        # complains about UnboundLocalError.
        err = None
    
        # Keep track of whether we cleanly exited the except block. This
        # ensures we do proper cleanup in finally.
        clean_exit = False
    
        # Rewind body position, if needed. Record current position
        # for future rewinds in the event of a redirect/retry.
        body_pos = set_file_position(body, body_pos)
    
        try:
            # Request a connection from the queue.
            timeout_obj = self._get_timeout(timeout)
            conn = self._get_conn(timeout=pool_timeout)
    
            conn.timeout = timeout_obj.connect_timeout
    
            is_new_proxy_conn = self.proxy is not None and not getattr(
                conn, "sock", None
            )
            if is_new_proxy_conn and http_tunnel_required:
                self._prepare_proxy(conn)
    
            # Make the request on the httplib connection object.
            httplib_response = self._make_request(
                conn,
                method,
                url,
                timeout=timeout_obj,
                body=body,
                headers=headers,
                chunked=chunked,
            )
    
            # If we're going to release the connection in ``finally:``, then
            # the response doesn't need to know about the connection. Otherwise
            # it will also try to release it and we'll have a double-release
            # mess.
            response_conn = conn if not release_conn else None
    
            # Pass method to Response for length checking
            response_kw["request_method"] = method
    
            # Import httplib's response into our own wrapper object
            response = self.ResponseCls.from_httplib(
                httplib_response,
                pool=self,
                connection=response_conn,
                retries=retries,
                **response_kw
            )
    
            # Everything went great!
            clean_exit = True
    
        except EmptyPoolError:
            # Didn't get a connection from the pool, no need to clean up
            clean_exit = True
            release_this_conn = False
            raise
    
        except (
            TimeoutError,
            HTTPException,
            SocketError,
            ProtocolError,
            BaseSSLError,
            SSLError,
            CertificateError,
        ) as e:
            # Discard the connection for these exceptions. It will be
            # replaced during the next _get_conn() call.
            clean_exit = False
            if isinstance(e, (BaseSSLError, CertificateError)):
                e = SSLError(e)
            elif isinstance(e, (SocketError, NewConnectionError)) and self.proxy:
                e = ProxyError("Cannot connect to proxy.", e)
            elif isinstance(e, (SocketError, HTTPException)):
                e = ProtocolError("Connection aborted.", e)
    
>           retries = retries.increment(
                method, url, error=e, _pool=self, _stacktrace=sys.exc_info()[2]
            )

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py:755: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = Retry(total=0, connect=None, read=False, redirect=None, status=None)
method = 'POST'
url = '/api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf'
response = None
error = NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7f754a382220>: Failed to establish a new connection: [Errno 110] Connection timed out')
_pool = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754a3829d0>
_stacktrace = <traceback object at 0x7f754a418d40>

    def increment(
        self,
        method=None,
        url=None,
        response=None,
        error=None,
        _pool=None,
        _stacktrace=None,
    ):
        """Return a new Retry object with incremented retry counters.
    
        :param response: A response object, or None, if the server did not
            return a response.
        :type response: :class:`~urllib3.response.HTTPResponse`
        :param Exception error: An error encountered during the request, or
            None if the response was received successfully.
    
        :return: A new ``Retry`` object.
        """
        if self.total is False and error:
            # Disabled, indicate to re-raise the error.
            raise six.reraise(type(error), error, _stacktrace)
    
        total = self.total
        if total is not None:
            total -= 1
    
        connect = self.connect
        read = self.read
        redirect = self.redirect
        status_count = self.status
        other = self.other
        cause = "unknown"
        status = None
        redirect_location = None
    
        if error and self._is_connection_error(error):
            # Connect retry?
            if connect is False:
                raise six.reraise(type(error), error, _stacktrace)
            elif connect is not None:
                connect -= 1
    
        elif error and self._is_read_error(error):
            # Read retry?
            if read is False or not self._is_method_retryable(method):
                raise six.reraise(type(error), error, _stacktrace)
            elif read is not None:
                read -= 1
    
        elif error:
            # Other retry?
            if other is not None:
                other -= 1
    
        elif response and response.get_redirect_location():
            # Redirect retry?
            if redirect is not None:
                redirect -= 1
            cause = "too many redirects"
            redirect_location = response.get_redirect_location()
            status = response.status
    
        else:
            # Incrementing because of a server error like a 500 in
            # status_forcelist and the given method is in the allowed_methods
            cause = ResponseError.GENERIC_ERROR
            if response and response.status:
                if status_count is not None:
                    status_count -= 1
                cause = ResponseError.SPECIFIC_ERROR.format(status_code=response.status)
                status = response.status
    
        history = self.history + (
            RequestHistory(method, url, error, status, redirect_location),
        )
    
        new_retry = self.new(
            total=total,
            connect=connect,
            read=read,
            redirect=redirect,
            status=status_count,
            other=other,
            history=history,
        )
    
        if new_retry.is_exhausted():
>           raise MaxRetryError(_pool, url, error or ResponseError(cause))
E           urllib3.exceptions.MaxRetryError: HTTPSConnectionPool(host='scicrunch.org', port=443): Max retries exceeded with url: /api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7f754a382220>: Failed to establish a new connection: [Errno 110] Connection timed out'))

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/util/retry.py:574: MaxRetryError

During handling of the above exception, another exception occurred:

client = <FlaskClient <Flask 'app.main'>>

    def test_create_identifier_query(client):
>       r = client.get('/dataset_info/using_object_identifier?identifier=package:e6435710-dd9c-46b7-9dfd-932103469733')

tests/test_scicrunch.py:159: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/werkzeug/test.py:1029: in get
    return self.open(*args, **kw)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/testing.py:222: in open
    return Client.open(
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/werkzeug/test.py:993: in open
    response = self.run_wsgi_app(environ.copy(), buffered=buffered)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/werkzeug/test.py:884: in run_wsgi_app
    rv = run_wsgi_app(self.application, environ, buffered=buffered)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/werkzeug/test.py:1119: in run_wsgi_app
    app_rv = app(environ, start_response)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:2463: in __call__
    return self.wsgi_app(environ, start_response)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:2449: in wsgi_app
    response = self.handle_exception(e)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask_cors/extension.py:161: in wrapped_function
    return cors_after_request(app.make_response(f(*args, **kwargs)))
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1866: in handle_exception
    reraise(exc_type, exc_value, tb)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/_compat.py:39: in reraise
    raise value
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:2446: in wsgi_app
    response = self.full_dispatch_request()
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1951: in full_dispatch_request
    rv = self.handle_user_exception(e)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask_cors/extension.py:161: in wrapped_function
    return cors_after_request(app.make_response(f(*args, **kwargs)))
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1820: in handle_user_exception
    reraise(exc_type, exc_value, tb)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/_compat.py:39: in reraise
    raise value
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1949: in full_dispatch_request
    rv = self.dispatch_request()
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1935: in dispatch_request
    return self.view_functions[rule.endpoint](**req.view_args)
app/main.py:583: in get_dataset_info_object_identifier
    return reform_dataset_results(dataset_search(query))
app/main.py:663: in dataset_search
    response = requests.post(f'{Config.SCI_CRUNCH_HOST}/_search',
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/api.py:119: in post
    return request('post', url, data=data, json=json, **kwargs)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/api.py:61: in request
    return session.request(method=method, url=url, **kwargs)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/sessions.py:542: in request
    resp = self.send(prep, **send_kwargs)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/sessions.py:655: in send
    r = adapter.send(request, **kwargs)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <requests.adapters.HTTPAdapter object at 0x7f754a6ee0a0>
request = <PreparedRequest [POST]>, stream = False
timeout = Timeout(connect=None, read=None, total=None), verify = True
cert = None, proxies = OrderedDict()

    def send(self, request, stream=False, timeout=None, verify=True, cert=None, proxies=None):
        """Sends PreparedRequest object. Returns Response object.
    
        :param request: The :class:`PreparedRequest <PreparedRequest>` being sent.
        :param stream: (optional) Whether to stream the request content.
        :param timeout: (optional) How long to wait for the server to send
            data before giving up, as a float, or a :ref:`(connect timeout,
            read timeout) <timeouts>` tuple.
        :type timeout: float or tuple or urllib3 Timeout object
        :param verify: (optional) Either a boolean, in which case it controls whether
            we verify the server's TLS certificate, or a string, in which case it
            must be a path to a CA bundle to use
        :param cert: (optional) Any user-provided SSL certificate to be trusted.
        :param proxies: (optional) The proxies dictionary to apply to the request.
        :rtype: requests.Response
        """
    
        try:
            conn = self.get_connection(request.url, proxies)
        except LocationValueError as e:
            raise InvalidURL(e, request=request)
    
        self.cert_verify(conn, request.url, verify, cert)
        url = self.request_url(request, proxies)
        self.add_headers(request, stream=stream, timeout=timeout, verify=verify, cert=cert, proxies=proxies)
    
        chunked = not (request.body is None or 'Content-Length' in request.headers)
    
        if isinstance(timeout, tuple):
            try:
                connect, read = timeout
                timeout = TimeoutSauce(connect=connect, read=read)
            except ValueError as e:
                # this may raise a string formatting error.
                err = ("Invalid timeout {}. Pass a (connect, read) "
                       "timeout tuple, or a single float to set "
                       "both timeouts to the same value".format(timeout))
                raise ValueError(err)
        elif isinstance(timeout, TimeoutSauce):
            pass
        else:
            timeout = TimeoutSauce(connect=timeout, read=timeout)
    
        try:
            if not chunked:
                resp = conn.urlopen(
                    method=request.method,
                    url=url,
                    body=request.body,
                    headers=request.headers,
                    redirect=False,
                    assert_same_host=False,
                    preload_content=False,
                    decode_content=False,
                    retries=self.max_retries,
                    timeout=timeout
                )
    
            # Send the request.
            else:
                if hasattr(conn, 'proxy_pool'):
                    conn = conn.proxy_pool
    
                low_conn = conn._get_conn(timeout=DEFAULT_POOL_TIMEOUT)
    
                try:
                    low_conn.putrequest(request.method,
                                        url,
                                        skip_accept_encoding=True)
    
                    for header, value in request.headers.items():
                        low_conn.putheader(header, value)
    
                    low_conn.endheaders()
    
                    for i in request.body:
                        low_conn.send(hex(len(i))[2:].encode('utf-8'))
                        low_conn.send(b'\r\n')
                        low_conn.send(i)
                        low_conn.send(b'\r\n')
                    low_conn.send(b'0\r\n\r\n')
    
                    # Receive the response from the server
                    try:
                        # For Python 2.7, use buffering of HTTP responses
                        r = low_conn.getresponse(buffering=True)
                    except TypeError:
                        # For compatibility with Python 3.3+
                        r = low_conn.getresponse()
    
                    resp = HTTPResponse.from_httplib(
                        r,
                        pool=conn,
                        connection=low_conn,
                        preload_content=False,
                        decode_content=False
                    )
                except:
                    # If we hit any problems here, clean up the connection.
                    # Then, reraise so that we can handle the actual exception.
                    low_conn.close()
                    raise
    
        except (ProtocolError, socket.error) as err:
            raise ConnectionError(err, request=request)
    
        except MaxRetryError as e:
            if isinstance(e.reason, ConnectTimeoutError):
                # TODO: Remove this in 3.0.0: see #2811
                if not isinstance(e.reason, NewConnectionError):
                    raise ConnectTimeout(e, request=request)
    
            if isinstance(e.reason, ResponseError):
                raise RetryError(e, request=request)
    
            if isinstance(e.reason, _ProxyError):
                raise ProxyError(e, request=request)
    
            if isinstance(e.reason, _SSLError):
                # This branch is for urllib3 v1.22 and later.
                raise SSLError(e, request=request)
    
>           raise ConnectionError(e, request=request)
E           requests.exceptions.ConnectionError: HTTPSConnectionPool(host='scicrunch.org', port=443): Max retries exceeded with url: /api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7f754a382220>: Failed to establish a new connection: [Errno 110] Connection timed out'))

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/adapters.py:516: ConnectionError
__________________________ test_create_anatomy_query ___________________________

self = <urllib3.connection.HTTPSConnection object at 0x7f754a47d790>

    def _new_conn(self):
        """Establish a socket connection and set nodelay settings on it.
    
        :return: New socket connection.
        """
        extra_kw = {}
        if self.source_address:
            extra_kw["source_address"] = self.source_address
    
        if self.socket_options:
            extra_kw["socket_options"] = self.socket_options
    
        try:
>           conn = connection.create_connection(
                (self._dns_host, self.port), self.timeout, **extra_kw
            )

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connection.py:169: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

address = ('scicrunch.org', 443), timeout = None, source_address = None
socket_options = [(6, 1, 1)]

    def create_connection(
        address,
        timeout=socket._GLOBAL_DEFAULT_TIMEOUT,
        source_address=None,
        socket_options=None,
    ):
        """Connect to *address* and return the socket object.
    
        Convenience function.  Connect to *address* (a 2-tuple ``(host,
        port)``) and return the socket object.  Passing the optional
        *timeout* parameter will set the timeout on the socket instance
        before attempting to connect.  If no *timeout* is supplied, the
        global default timeout setting returned by :func:`socket.getdefaulttimeout`
        is used.  If *source_address* is set it must be a tuple of (host, port)
        for the socket to bind as a source address before making the connection.
        An host of '' or port 0 tells the OS to use the default.
        """
    
        host, port = address
        if host.startswith("["):
            host = host.strip("[]")
        err = None
    
        # Using the value from allowed_gai_family() in the context of getaddrinfo lets
        # us select whether to work with IPv4 DNS records, IPv6 records, or both.
        # The original create_connection function always returns all records.
        family = allowed_gai_family()
    
        try:
            host.encode("idna")
        except UnicodeError:
            return six.raise_from(
                LocationParseError(u"'%s', label empty or too long" % host), None
            )
    
        for res in socket.getaddrinfo(host, port, family, socket.SOCK_STREAM):
            af, socktype, proto, canonname, sa = res
            sock = None
            try:
                sock = socket.socket(af, socktype, proto)
    
                # If provided, set socket level options before connecting.
                _set_socket_options(sock, socket_options)
    
                if timeout is not socket._GLOBAL_DEFAULT_TIMEOUT:
                    sock.settimeout(timeout)
                if source_address:
                    sock.bind(source_address)
                sock.connect(sa)
                return sock
    
            except socket.error as e:
                err = e
                if sock is not None:
                    sock.close()
                    sock = None
    
        if err is not None:
>           raise err

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/util/connection.py:96: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

address = ('scicrunch.org', 443), timeout = None, source_address = None
socket_options = [(6, 1, 1)]

    def create_connection(
        address,
        timeout=socket._GLOBAL_DEFAULT_TIMEOUT,
        source_address=None,
        socket_options=None,
    ):
        """Connect to *address* and return the socket object.
    
        Convenience function.  Connect to *address* (a 2-tuple ``(host,
        port)``) and return the socket object.  Passing the optional
        *timeout* parameter will set the timeout on the socket instance
        before attempting to connect.  If no *timeout* is supplied, the
        global default timeout setting returned by :func:`socket.getdefaulttimeout`
        is used.  If *source_address* is set it must be a tuple of (host, port)
        for the socket to bind as a source address before making the connection.
        An host of '' or port 0 tells the OS to use the default.
        """
    
        host, port = address
        if host.startswith("["):
            host = host.strip("[]")
        err = None
    
        # Using the value from allowed_gai_family() in the context of getaddrinfo lets
        # us select whether to work with IPv4 DNS records, IPv6 records, or both.
        # The original create_connection function always returns all records.
        family = allowed_gai_family()
    
        try:
            host.encode("idna")
        except UnicodeError:
            return six.raise_from(
                LocationParseError(u"'%s', label empty or too long" % host), None
            )
    
        for res in socket.getaddrinfo(host, port, family, socket.SOCK_STREAM):
            af, socktype, proto, canonname, sa = res
            sock = None
            try:
                sock = socket.socket(af, socktype, proto)
    
                # If provided, set socket level options before connecting.
                _set_socket_options(sock, socket_options)
    
                if timeout is not socket._GLOBAL_DEFAULT_TIMEOUT:
                    sock.settimeout(timeout)
                if source_address:
                    sock.bind(source_address)
>               sock.connect(sa)
E               TimeoutError: [Errno 110] Connection timed out

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/util/connection.py:86: TimeoutError

During handling of the above exception, another exception occurred:

self = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754a47d2b0>
method = 'POST'
url = '/api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf'
body = b'{"size": 1, "from": 0, "query": {"match": {"pennsieve.identifier": {"query": "90"}}}, "_source": ["anatomy", "item.curie", "organisms"]}'
headers = {'User-Agent': 'python-requests/2.25.1', 'Accept-Encoding': 'gzip, deflate', 'Accept': '*/*', 'Connection': 'keep-alive', 'Content-Length': '136', 'Content-Type': 'application/json'}
retries = Retry(total=0, connect=None, read=False, redirect=None, status=None)
redirect = False, assert_same_host = False
timeout = Timeout(connect=None, read=None, total=None), pool_timeout = None
release_conn = False, chunked = False, body_pos = None
response_kw = {'decode_content': False, 'preload_content': False}
parsed_url = Url(scheme=None, auth=None, host=None, port=None, path='/api/1/elastic/SPARC_PortalDatasets_dev/_search', query='api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf', fragment=None)
destination_scheme = None, conn = None, release_this_conn = True
http_tunnel_required = False, err = None, clean_exit = False

    def urlopen(
        self,
        method,
        url,
        body=None,
        headers=None,
        retries=None,
        redirect=True,
        assert_same_host=True,
        timeout=_Default,
        pool_timeout=None,
        release_conn=None,
        chunked=False,
        body_pos=None,
        **response_kw
    ):
        """
        Get a connection from the pool and perform an HTTP request. This is the
        lowest level call for making a request, so you'll need to specify all
        the raw details.
    
        .. note::
    
           More commonly, it's appropriate to use a convenience method provided
           by :class:`.RequestMethods`, such as :meth:`request`.
    
        .. note::
    
           `release_conn` will only behave as expected if
           `preload_content=False` because we want to make
           `preload_content=False` the default behaviour someday soon without
           breaking backwards compatibility.
    
        :param method:
            HTTP request method (such as GET, POST, PUT, etc.)
    
        :param url:
            The URL to perform the request on.
    
        :param body:
            Data to send in the request body, either :class:`str`, :class:`bytes`,
            an iterable of :class:`str`/:class:`bytes`, or a file-like object.
    
        :param headers:
            Dictionary of custom headers to send, such as User-Agent,
            If-None-Match, etc. If None, pool headers are used. If provided,
            these headers completely replace any pool-specific headers.
    
        :param retries:
            Configure the number of retries to allow before raising a
            :class:`~urllib3.exceptions.MaxRetryError` exception.
    
            Pass ``None`` to retry until you receive a response. Pass a
            :class:`~urllib3.util.retry.Retry` object for fine-grained control
            over different types of retries.
            Pass an integer number to retry connection errors that many times,
            but no other types of errors. Pass zero to never retry.
    
            If ``False``, then retries are disabled and any exception is raised
            immediately. Also, instead of raising a MaxRetryError on redirects,
            the redirect response will be returned.
    
        :type retries: :class:`~urllib3.util.retry.Retry`, False, or an int.
    
        :param redirect:
            If True, automatically handle redirects (status codes 301, 302,
            303, 307, 308). Each redirect counts as a retry. Disabling retries
            will disable redirect, too.
    
        :param assert_same_host:
            If ``True``, will make sure that the host of the pool requests is
            consistent else will raise HostChangedError. When ``False``, you can
            use the pool on an HTTP proxy and request foreign hosts.
    
        :param timeout:
            If specified, overrides the default timeout for this one
            request. It may be a float (in seconds) or an instance of
            :class:`urllib3.util.Timeout`.
    
        :param pool_timeout:
            If set and the pool is set to block=True, then this method will
            block for ``pool_timeout`` seconds and raise EmptyPoolError if no
            connection is available within the time period.
    
        :param release_conn:
            If False, then the urlopen call will not release the connection
            back into the pool once a response is received (but will release if
            you read the entire contents of the response such as when
            `preload_content=True`). This is useful if you're not preloading
            the response's content immediately. You will need to call
            ``r.release_conn()`` on the response ``r`` to return the connection
            back into the pool. If None, it takes the value of
            ``response_kw.get('preload_content', True)``.
    
        :param chunked:
            If True, urllib3 will send the body using chunked transfer
            encoding. Otherwise, urllib3 will send the body using the standard
            content-length form. Defaults to False.
    
        :param int body_pos:
            Position to seek to in file-like body in the event of a retry or
            redirect. Typically this won't need to be set because urllib3 will
            auto-populate the value when needed.
    
        :param \\**response_kw:
            Additional parameters are passed to
            :meth:`urllib3.response.HTTPResponse.from_httplib`
        """
    
        parsed_url = parse_url(url)
        destination_scheme = parsed_url.scheme
    
        if headers is None:
            headers = self.headers
    
        if not isinstance(retries, Retry):
            retries = Retry.from_int(retries, redirect=redirect, default=self.retries)
    
        if release_conn is None:
            release_conn = response_kw.get("preload_content", True)
    
        # Check host
        if assert_same_host and not self.is_same_host(url):
            raise HostChangedError(self, url, retries)
    
        # Ensure that the URL we're connecting to is properly encoded
        if url.startswith("/"):
            url = six.ensure_str(_encode_target(url))
        else:
            url = six.ensure_str(parsed_url.url)
    
        conn = None
    
        # Track whether `conn` needs to be released before
        # returning/raising/recursing. Update this variable if necessary, and
        # leave `release_conn` constant throughout the function. That way, if
        # the function recurses, the original value of `release_conn` will be
        # passed down into the recursive call, and its value will be respected.
        #
        # See issue #651 [1] for details.
        #
        # [1] <https://github.com/urllib3/urllib3/issues/651>
        release_this_conn = release_conn
    
        http_tunnel_required = connection_requires_http_tunnel(
            self.proxy, self.proxy_config, destination_scheme
        )
    
        # Merge the proxy headers. Only done when not using HTTP CONNECT. We
        # have to copy the headers dict so we can safely change it without those
        # changes being reflected in anyone else's copy.
        if not http_tunnel_required:
            headers = headers.copy()
            headers.update(self.proxy_headers)
    
        # Must keep the exception bound to a separate variable or else Python 3
        # complains about UnboundLocalError.
        err = None
    
        # Keep track of whether we cleanly exited the except block. This
        # ensures we do proper cleanup in finally.
        clean_exit = False
    
        # Rewind body position, if needed. Record current position
        # for future rewinds in the event of a redirect/retry.
        body_pos = set_file_position(body, body_pos)
    
        try:
            # Request a connection from the queue.
            timeout_obj = self._get_timeout(timeout)
            conn = self._get_conn(timeout=pool_timeout)
    
            conn.timeout = timeout_obj.connect_timeout
    
            is_new_proxy_conn = self.proxy is not None and not getattr(
                conn, "sock", None
            )
            if is_new_proxy_conn and http_tunnel_required:
                self._prepare_proxy(conn)
    
            # Make the request on the httplib connection object.
>           httplib_response = self._make_request(
                conn,
                method,
                url,
                timeout=timeout_obj,
                body=body,
                headers=headers,
                chunked=chunked,
            )

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py:699: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754a47d2b0>
conn = <urllib3.connection.HTTPSConnection object at 0x7f754a47d790>
method = 'POST'
url = '/api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf'
timeout = Timeout(connect=None, read=None, total=None), chunked = False
httplib_request_kw = {'body': b'{"size": 1, "from": 0, "query": {"match": {"pennsieve.identifier": {"query": "90"}}}, "_source": ["anatomy"...p, deflate', 'Accept': '*/*', 'Connection': 'keep-alive', 'Content-Length': '136', 'Content-Type': 'application/json'}}
timeout_obj = Timeout(connect=None, read=None, total=None)

    def _make_request(
        self, conn, method, url, timeout=_Default, chunked=False, **httplib_request_kw
    ):
        """
        Perform a request on a given urllib connection object taken from our
        pool.
    
        :param conn:
            a connection from one of our connection pools
    
        :param timeout:
            Socket timeout in seconds for the request. This can be a
            float or integer, which will set the same timeout value for
            the socket connect and the socket read, or an instance of
            :class:`urllib3.util.Timeout`, which gives you more fine-grained
            control over your timeouts.
        """
        self.num_requests += 1
    
        timeout_obj = self._get_timeout(timeout)
        timeout_obj.start_connect()
        conn.timeout = timeout_obj.connect_timeout
    
        # Trigger any extra validation we need to do.
        try:
>           self._validate_conn(conn)

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py:382: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754a47d2b0>
conn = <urllib3.connection.HTTPSConnection object at 0x7f754a47d790>

    def _validate_conn(self, conn):
        """
        Called right before a request is made, after the socket is created.
        """
        super(HTTPSConnectionPool, self)._validate_conn(conn)
    
        # Force connect early to allow us to validate the connection.
        if not getattr(conn, "sock", None):  # AppEngine might not have  `.sock`
>           conn.connect()

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py:1010: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connection.HTTPSConnection object at 0x7f754a47d790>

    def connect(self):
        # Add certificate verification
>       conn = self._new_conn()

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connection.py:353: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connection.HTTPSConnection object at 0x7f754a47d790>

    def _new_conn(self):
        """Establish a socket connection and set nodelay settings on it.
    
        :return: New socket connection.
        """
        extra_kw = {}
        if self.source_address:
            extra_kw["source_address"] = self.source_address
    
        if self.socket_options:
            extra_kw["socket_options"] = self.socket_options
    
        try:
            conn = connection.create_connection(
                (self._dns_host, self.port), self.timeout, **extra_kw
            )
    
        except SocketTimeout:
            raise ConnectTimeoutError(
                self,
                "Connection to %s timed out. (connect timeout=%s)"
                % (self.host, self.timeout),
            )
    
        except SocketError as e:
>           raise NewConnectionError(
                self, "Failed to establish a new connection: %s" % e
            )
E           urllib3.exceptions.NewConnectionError: <urllib3.connection.HTTPSConnection object at 0x7f754a47d790>: Failed to establish a new connection: [Errno 110] Connection timed out

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connection.py:181: NewConnectionError

During handling of the above exception, another exception occurred:

self = <requests.adapters.HTTPAdapter object at 0x7f754a7a2a90>
request = <PreparedRequest [POST]>, stream = False
timeout = Timeout(connect=None, read=None, total=None), verify = True
cert = None, proxies = OrderedDict()

    def send(self, request, stream=False, timeout=None, verify=True, cert=None, proxies=None):
        """Sends PreparedRequest object. Returns Response object.
    
        :param request: The :class:`PreparedRequest <PreparedRequest>` being sent.
        :param stream: (optional) Whether to stream the request content.
        :param timeout: (optional) How long to wait for the server to send
            data before giving up, as a float, or a :ref:`(connect timeout,
            read timeout) <timeouts>` tuple.
        :type timeout: float or tuple or urllib3 Timeout object
        :param verify: (optional) Either a boolean, in which case it controls whether
            we verify the server's TLS certificate, or a string, in which case it
            must be a path to a CA bundle to use
        :param cert: (optional) Any user-provided SSL certificate to be trusted.
        :param proxies: (optional) The proxies dictionary to apply to the request.
        :rtype: requests.Response
        """
    
        try:
            conn = self.get_connection(request.url, proxies)
        except LocationValueError as e:
            raise InvalidURL(e, request=request)
    
        self.cert_verify(conn, request.url, verify, cert)
        url = self.request_url(request, proxies)
        self.add_headers(request, stream=stream, timeout=timeout, verify=verify, cert=cert, proxies=proxies)
    
        chunked = not (request.body is None or 'Content-Length' in request.headers)
    
        if isinstance(timeout, tuple):
            try:
                connect, read = timeout
                timeout = TimeoutSauce(connect=connect, read=read)
            except ValueError as e:
                # this may raise a string formatting error.
                err = ("Invalid timeout {}. Pass a (connect, read) "
                       "timeout tuple, or a single float to set "
                       "both timeouts to the same value".format(timeout))
                raise ValueError(err)
        elif isinstance(timeout, TimeoutSauce):
            pass
        else:
            timeout = TimeoutSauce(connect=timeout, read=timeout)
    
        try:
            if not chunked:
>               resp = conn.urlopen(
                    method=request.method,
                    url=url,
                    body=request.body,
                    headers=request.headers,
                    redirect=False,
                    assert_same_host=False,
                    preload_content=False,
                    decode_content=False,
                    retries=self.max_retries,
                    timeout=timeout
                )

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/adapters.py:439: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754a47d2b0>
method = 'POST'
url = '/api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf'
body = b'{"size": 1, "from": 0, "query": {"match": {"pennsieve.identifier": {"query": "90"}}}, "_source": ["anatomy", "item.curie", "organisms"]}'
headers = {'User-Agent': 'python-requests/2.25.1', 'Accept-Encoding': 'gzip, deflate', 'Accept': '*/*', 'Connection': 'keep-alive', 'Content-Length': '136', 'Content-Type': 'application/json'}
retries = Retry(total=0, connect=None, read=False, redirect=None, status=None)
redirect = False, assert_same_host = False
timeout = Timeout(connect=None, read=None, total=None), pool_timeout = None
release_conn = False, chunked = False, body_pos = None
response_kw = {'decode_content': False, 'preload_content': False}
parsed_url = Url(scheme=None, auth=None, host=None, port=None, path='/api/1/elastic/SPARC_PortalDatasets_dev/_search', query='api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf', fragment=None)
destination_scheme = None, conn = None, release_this_conn = True
http_tunnel_required = False, err = None, clean_exit = False

    def urlopen(
        self,
        method,
        url,
        body=None,
        headers=None,
        retries=None,
        redirect=True,
        assert_same_host=True,
        timeout=_Default,
        pool_timeout=None,
        release_conn=None,
        chunked=False,
        body_pos=None,
        **response_kw
    ):
        """
        Get a connection from the pool and perform an HTTP request. This is the
        lowest level call for making a request, so you'll need to specify all
        the raw details.
    
        .. note::
    
           More commonly, it's appropriate to use a convenience method provided
           by :class:`.RequestMethods`, such as :meth:`request`.
    
        .. note::
    
           `release_conn` will only behave as expected if
           `preload_content=False` because we want to make
           `preload_content=False` the default behaviour someday soon without
           breaking backwards compatibility.
    
        :param method:
            HTTP request method (such as GET, POST, PUT, etc.)
    
        :param url:
            The URL to perform the request on.
    
        :param body:
            Data to send in the request body, either :class:`str`, :class:`bytes`,
            an iterable of :class:`str`/:class:`bytes`, or a file-like object.
    
        :param headers:
            Dictionary of custom headers to send, such as User-Agent,
            If-None-Match, etc. If None, pool headers are used. If provided,
            these headers completely replace any pool-specific headers.
    
        :param retries:
            Configure the number of retries to allow before raising a
            :class:`~urllib3.exceptions.MaxRetryError` exception.
    
            Pass ``None`` to retry until you receive a response. Pass a
            :class:`~urllib3.util.retry.Retry` object for fine-grained control
            over different types of retries.
            Pass an integer number to retry connection errors that many times,
            but no other types of errors. Pass zero to never retry.
    
            If ``False``, then retries are disabled and any exception is raised
            immediately. Also, instead of raising a MaxRetryError on redirects,
            the redirect response will be returned.
    
        :type retries: :class:`~urllib3.util.retry.Retry`, False, or an int.
    
        :param redirect:
            If True, automatically handle redirects (status codes 301, 302,
            303, 307, 308). Each redirect counts as a retry. Disabling retries
            will disable redirect, too.
    
        :param assert_same_host:
            If ``True``, will make sure that the host of the pool requests is
            consistent else will raise HostChangedError. When ``False``, you can
            use the pool on an HTTP proxy and request foreign hosts.
    
        :param timeout:
            If specified, overrides the default timeout for this one
            request. It may be a float (in seconds) or an instance of
            :class:`urllib3.util.Timeout`.
    
        :param pool_timeout:
            If set and the pool is set to block=True, then this method will
            block for ``pool_timeout`` seconds and raise EmptyPoolError if no
            connection is available within the time period.
    
        :param release_conn:
            If False, then the urlopen call will not release the connection
            back into the pool once a response is received (but will release if
            you read the entire contents of the response such as when
            `preload_content=True`). This is useful if you're not preloading
            the response's content immediately. You will need to call
            ``r.release_conn()`` on the response ``r`` to return the connection
            back into the pool. If None, it takes the value of
            ``response_kw.get('preload_content', True)``.
    
        :param chunked:
            If True, urllib3 will send the body using chunked transfer
            encoding. Otherwise, urllib3 will send the body using the standard
            content-length form. Defaults to False.
    
        :param int body_pos:
            Position to seek to in file-like body in the event of a retry or
            redirect. Typically this won't need to be set because urllib3 will
            auto-populate the value when needed.
    
        :param \\**response_kw:
            Additional parameters are passed to
            :meth:`urllib3.response.HTTPResponse.from_httplib`
        """
    
        parsed_url = parse_url(url)
        destination_scheme = parsed_url.scheme
    
        if headers is None:
            headers = self.headers
    
        if not isinstance(retries, Retry):
            retries = Retry.from_int(retries, redirect=redirect, default=self.retries)
    
        if release_conn is None:
            release_conn = response_kw.get("preload_content", True)
    
        # Check host
        if assert_same_host and not self.is_same_host(url):
            raise HostChangedError(self, url, retries)
    
        # Ensure that the URL we're connecting to is properly encoded
        if url.startswith("/"):
            url = six.ensure_str(_encode_target(url))
        else:
            url = six.ensure_str(parsed_url.url)
    
        conn = None
    
        # Track whether `conn` needs to be released before
        # returning/raising/recursing. Update this variable if necessary, and
        # leave `release_conn` constant throughout the function. That way, if
        # the function recurses, the original value of `release_conn` will be
        # passed down into the recursive call, and its value will be respected.
        #
        # See issue #651 [1] for details.
        #
        # [1] <https://github.com/urllib3/urllib3/issues/651>
        release_this_conn = release_conn
    
        http_tunnel_required = connection_requires_http_tunnel(
            self.proxy, self.proxy_config, destination_scheme
        )
    
        # Merge the proxy headers. Only done when not using HTTP CONNECT. We
        # have to copy the headers dict so we can safely change it without those
        # changes being reflected in anyone else's copy.
        if not http_tunnel_required:
            headers = headers.copy()
            headers.update(self.proxy_headers)
    
        # Must keep the exception bound to a separate variable or else Python 3
        # complains about UnboundLocalError.
        err = None
    
        # Keep track of whether we cleanly exited the except block. This
        # ensures we do proper cleanup in finally.
        clean_exit = False
    
        # Rewind body position, if needed. Record current position
        # for future rewinds in the event of a redirect/retry.
        body_pos = set_file_position(body, body_pos)
    
        try:
            # Request a connection from the queue.
            timeout_obj = self._get_timeout(timeout)
            conn = self._get_conn(timeout=pool_timeout)
    
            conn.timeout = timeout_obj.connect_timeout
    
            is_new_proxy_conn = self.proxy is not None and not getattr(
                conn, "sock", None
            )
            if is_new_proxy_conn and http_tunnel_required:
                self._prepare_proxy(conn)
    
            # Make the request on the httplib connection object.
            httplib_response = self._make_request(
                conn,
                method,
                url,
                timeout=timeout_obj,
                body=body,
                headers=headers,
                chunked=chunked,
            )
    
            # If we're going to release the connection in ``finally:``, then
            # the response doesn't need to know about the connection. Otherwise
            # it will also try to release it and we'll have a double-release
            # mess.
            response_conn = conn if not release_conn else None
    
            # Pass method to Response for length checking
            response_kw["request_method"] = method
    
            # Import httplib's response into our own wrapper object
            response = self.ResponseCls.from_httplib(
                httplib_response,
                pool=self,
                connection=response_conn,
                retries=retries,
                **response_kw
            )
    
            # Everything went great!
            clean_exit = True
    
        except EmptyPoolError:
            # Didn't get a connection from the pool, no need to clean up
            clean_exit = True
            release_this_conn = False
            raise
    
        except (
            TimeoutError,
            HTTPException,
            SocketError,
            ProtocolError,
            BaseSSLError,
            SSLError,
            CertificateError,
        ) as e:
            # Discard the connection for these exceptions. It will be
            # replaced during the next _get_conn() call.
            clean_exit = False
            if isinstance(e, (BaseSSLError, CertificateError)):
                e = SSLError(e)
            elif isinstance(e, (SocketError, NewConnectionError)) and self.proxy:
                e = ProxyError("Cannot connect to proxy.", e)
            elif isinstance(e, (SocketError, HTTPException)):
                e = ProtocolError("Connection aborted.", e)
    
>           retries = retries.increment(
                method, url, error=e, _pool=self, _stacktrace=sys.exc_info()[2]
            )

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py:755: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = Retry(total=0, connect=None, read=False, redirect=None, status=None)
method = 'POST'
url = '/api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf'
response = None
error = NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7f754a47d790>: Failed to establish a new connection: [Errno 110] Connection timed out')
_pool = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754a47d2b0>
_stacktrace = <traceback object at 0x7f754a3932c0>

    def increment(
        self,
        method=None,
        url=None,
        response=None,
        error=None,
        _pool=None,
        _stacktrace=None,
    ):
        """Return a new Retry object with incremented retry counters.
    
        :param response: A response object, or None, if the server did not
            return a response.
        :type response: :class:`~urllib3.response.HTTPResponse`
        :param Exception error: An error encountered during the request, or
            None if the response was received successfully.
    
        :return: A new ``Retry`` object.
        """
        if self.total is False and error:
            # Disabled, indicate to re-raise the error.
            raise six.reraise(type(error), error, _stacktrace)
    
        total = self.total
        if total is not None:
            total -= 1
    
        connect = self.connect
        read = self.read
        redirect = self.redirect
        status_count = self.status
        other = self.other
        cause = "unknown"
        status = None
        redirect_location = None
    
        if error and self._is_connection_error(error):
            # Connect retry?
            if connect is False:
                raise six.reraise(type(error), error, _stacktrace)
            elif connect is not None:
                connect -= 1
    
        elif error and self._is_read_error(error):
            # Read retry?
            if read is False or not self._is_method_retryable(method):
                raise six.reraise(type(error), error, _stacktrace)
            elif read is not None:
                read -= 1
    
        elif error:
            # Other retry?
            if other is not None:
                other -= 1
    
        elif response and response.get_redirect_location():
            # Redirect retry?
            if redirect is not None:
                redirect -= 1
            cause = "too many redirects"
            redirect_location = response.get_redirect_location()
            status = response.status
    
        else:
            # Incrementing because of a server error like a 500 in
            # status_forcelist and the given method is in the allowed_methods
            cause = ResponseError.GENERIC_ERROR
            if response and response.status:
                if status_count is not None:
                    status_count -= 1
                cause = ResponseError.SPECIFIC_ERROR.format(status_code=response.status)
                status = response.status
    
        history = self.history + (
            RequestHistory(method, url, error, status, redirect_location),
        )
    
        new_retry = self.new(
            total=total,
            connect=connect,
            read=read,
            redirect=redirect,
            status=status_count,
            other=other,
            history=history,
        )
    
        if new_retry.is_exhausted():
>           raise MaxRetryError(_pool, url, error or ResponseError(cause))
E           urllib3.exceptions.MaxRetryError: HTTPSConnectionPool(host='scicrunch.org', port=443): Max retries exceeded with url: /api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7f754a47d790>: Failed to establish a new connection: [Errno 110] Connection timed out'))

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/util/retry.py:574: MaxRetryError

During handling of the above exception, another exception occurred:

client = <FlaskClient <Flask 'app.main'>>

    def test_create_anatomy_query(client):
>       r = client.get('/dataset_info/anatomy?identifier=90')

tests/test_scicrunch.py:176: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/werkzeug/test.py:1029: in get
    return self.open(*args, **kw)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/testing.py:222: in open
    return Client.open(
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/werkzeug/test.py:993: in open
    response = self.run_wsgi_app(environ.copy(), buffered=buffered)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/werkzeug/test.py:884: in run_wsgi_app
    rv = run_wsgi_app(self.application, environ, buffered=buffered)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/werkzeug/test.py:1119: in run_wsgi_app
    app_rv = app(environ, start_response)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:2463: in __call__
    return self.wsgi_app(environ, start_response)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:2449: in wsgi_app
    response = self.handle_exception(e)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask_cors/extension.py:161: in wrapped_function
    return cors_after_request(app.make_response(f(*args, **kwargs)))
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1866: in handle_exception
    reraise(exc_type, exc_value, tb)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/_compat.py:39: in reraise
    raise value
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:2446: in wsgi_app
    response = self.full_dispatch_request()
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1951: in full_dispatch_request
    rv = self.handle_user_exception(e)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask_cors/extension.py:161: in wrapped_function
    return cors_after_request(app.make_response(f(*args, **kwargs)))
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1820: in handle_user_exception
    reraise(exc_type, exc_value, tb)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/_compat.py:39: in reraise
    raise value
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1949: in full_dispatch_request
    rv = self.dispatch_request()
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1935: in dispatch_request
    return self.view_functions[rule.endpoint](**req.view_args)
app/main.py:594: in get_dataset_info_anatomy
    return reform_anatomy_results(dataset_search(query))
app/main.py:663: in dataset_search
    response = requests.post(f'{Config.SCI_CRUNCH_HOST}/_search',
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/api.py:119: in post
    return request('post', url, data=data, json=json, **kwargs)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/api.py:61: in request
    return session.request(method=method, url=url, **kwargs)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/sessions.py:542: in request
    resp = self.send(prep, **send_kwargs)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/sessions.py:655: in send
    r = adapter.send(request, **kwargs)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <requests.adapters.HTTPAdapter object at 0x7f754a7a2a90>
request = <PreparedRequest [POST]>, stream = False
timeout = Timeout(connect=None, read=None, total=None), verify = True
cert = None, proxies = OrderedDict()

    def send(self, request, stream=False, timeout=None, verify=True, cert=None, proxies=None):
        """Sends PreparedRequest object. Returns Response object.
    
        :param request: The :class:`PreparedRequest <PreparedRequest>` being sent.
        :param stream: (optional) Whether to stream the request content.
        :param timeout: (optional) How long to wait for the server to send
            data before giving up, as a float, or a :ref:`(connect timeout,
            read timeout) <timeouts>` tuple.
        :type timeout: float or tuple or urllib3 Timeout object
        :param verify: (optional) Either a boolean, in which case it controls whether
            we verify the server's TLS certificate, or a string, in which case it
            must be a path to a CA bundle to use
        :param cert: (optional) Any user-provided SSL certificate to be trusted.
        :param proxies: (optional) The proxies dictionary to apply to the request.
        :rtype: requests.Response
        """
    
        try:
            conn = self.get_connection(request.url, proxies)
        except LocationValueError as e:
            raise InvalidURL(e, request=request)
    
        self.cert_verify(conn, request.url, verify, cert)
        url = self.request_url(request, proxies)
        self.add_headers(request, stream=stream, timeout=timeout, verify=verify, cert=cert, proxies=proxies)
    
        chunked = not (request.body is None or 'Content-Length' in request.headers)
    
        if isinstance(timeout, tuple):
            try:
                connect, read = timeout
                timeout = TimeoutSauce(connect=connect, read=read)
            except ValueError as e:
                # this may raise a string formatting error.
                err = ("Invalid timeout {}. Pass a (connect, read) "
                       "timeout tuple, or a single float to set "
                       "both timeouts to the same value".format(timeout))
                raise ValueError(err)
        elif isinstance(timeout, TimeoutSauce):
            pass
        else:
            timeout = TimeoutSauce(connect=timeout, read=timeout)
    
        try:
            if not chunked:
                resp = conn.urlopen(
                    method=request.method,
                    url=url,
                    body=request.body,
                    headers=request.headers,
                    redirect=False,
                    assert_same_host=False,
                    preload_content=False,
                    decode_content=False,
                    retries=self.max_retries,
                    timeout=timeout
                )
    
            # Send the request.
            else:
                if hasattr(conn, 'proxy_pool'):
                    conn = conn.proxy_pool
    
                low_conn = conn._get_conn(timeout=DEFAULT_POOL_TIMEOUT)
    
                try:
                    low_conn.putrequest(request.method,
                                        url,
                                        skip_accept_encoding=True)
    
                    for header, value in request.headers.items():
                        low_conn.putheader(header, value)
    
                    low_conn.endheaders()
    
                    for i in request.body:
                        low_conn.send(hex(len(i))[2:].encode('utf-8'))
                        low_conn.send(b'\r\n')
                        low_conn.send(i)
                        low_conn.send(b'\r\n')
                    low_conn.send(b'0\r\n\r\n')
    
                    # Receive the response from the server
                    try:
                        # For Python 2.7, use buffering of HTTP responses
                        r = low_conn.getresponse(buffering=True)
                    except TypeError:
                        # For compatibility with Python 3.3+
                        r = low_conn.getresponse()
    
                    resp = HTTPResponse.from_httplib(
                        r,
                        pool=conn,
                        connection=low_conn,
                        preload_content=False,
                        decode_content=False
                    )
                except:
                    # If we hit any problems here, clean up the connection.
                    # Then, reraise so that we can handle the actual exception.
                    low_conn.close()
                    raise
    
        except (ProtocolError, socket.error) as err:
            raise ConnectionError(err, request=request)
    
        except MaxRetryError as e:
            if isinstance(e.reason, ConnectTimeoutError):
                # TODO: Remove this in 3.0.0: see #2811
                if not isinstance(e.reason, NewConnectionError):
                    raise ConnectTimeout(e, request=request)
    
            if isinstance(e.reason, ResponseError):
                raise RetryError(e, request=request)
    
            if isinstance(e.reason, _ProxyError):
                raise ProxyError(e, request=request)
    
            if isinstance(e.reason, _SSLError):
                # This branch is for urllib3 v1.22 and later.
                raise SSLError(e, request=request)
    
>           raise ConnectionError(e, request=request)
E           requests.exceptions.ConnectionError: HTTPSConnectionPool(host='scicrunch.org', port=443): Max retries exceeded with url: /api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7f754a47d790>: Failed to establish a new connection: [Errno 110] Connection timed out'))

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/adapters.py:516: ConnectionError
____________________________ test_response_version _____________________________

self = <urllib3.connection.HTTPSConnection object at 0x7f754a55fa60>

    def _new_conn(self):
        """Establish a socket connection and set nodelay settings on it.
    
        :return: New socket connection.
        """
        extra_kw = {}
        if self.source_address:
            extra_kw["source_address"] = self.source_address
    
        if self.socket_options:
            extra_kw["socket_options"] = self.socket_options
    
        try:
>           conn = connection.create_connection(
                (self._dns_host, self.port), self.timeout, **extra_kw
            )

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connection.py:169: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

address = ('scicrunch.org', 443), timeout = None, source_address = None
socket_options = [(6, 1, 1)]

    def create_connection(
        address,
        timeout=socket._GLOBAL_DEFAULT_TIMEOUT,
        source_address=None,
        socket_options=None,
    ):
        """Connect to *address* and return the socket object.
    
        Convenience function.  Connect to *address* (a 2-tuple ``(host,
        port)``) and return the socket object.  Passing the optional
        *timeout* parameter will set the timeout on the socket instance
        before attempting to connect.  If no *timeout* is supplied, the
        global default timeout setting returned by :func:`socket.getdefaulttimeout`
        is used.  If *source_address* is set it must be a tuple of (host, port)
        for the socket to bind as a source address before making the connection.
        An host of '' or port 0 tells the OS to use the default.
        """
    
        host, port = address
        if host.startswith("["):
            host = host.strip("[]")
        err = None
    
        # Using the value from allowed_gai_family() in the context of getaddrinfo lets
        # us select whether to work with IPv4 DNS records, IPv6 records, or both.
        # The original create_connection function always returns all records.
        family = allowed_gai_family()
    
        try:
            host.encode("idna")
        except UnicodeError:
            return six.raise_from(
                LocationParseError(u"'%s', label empty or too long" % host), None
            )
    
        for res in socket.getaddrinfo(host, port, family, socket.SOCK_STREAM):
            af, socktype, proto, canonname, sa = res
            sock = None
            try:
                sock = socket.socket(af, socktype, proto)
    
                # If provided, set socket level options before connecting.
                _set_socket_options(sock, socket_options)
    
                if timeout is not socket._GLOBAL_DEFAULT_TIMEOUT:
                    sock.settimeout(timeout)
                if source_address:
                    sock.bind(source_address)
                sock.connect(sa)
                return sock
    
            except socket.error as e:
                err = e
                if sock is not None:
                    sock.close()
                    sock = None
    
        if err is not None:
>           raise err

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/util/connection.py:96: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

address = ('scicrunch.org', 443), timeout = None, source_address = None
socket_options = [(6, 1, 1)]

    def create_connection(
        address,
        timeout=socket._GLOBAL_DEFAULT_TIMEOUT,
        source_address=None,
        socket_options=None,
    ):
        """Connect to *address* and return the socket object.
    
        Convenience function.  Connect to *address* (a 2-tuple ``(host,
        port)``) and return the socket object.  Passing the optional
        *timeout* parameter will set the timeout on the socket instance
        before attempting to connect.  If no *timeout* is supplied, the
        global default timeout setting returned by :func:`socket.getdefaulttimeout`
        is used.  If *source_address* is set it must be a tuple of (host, port)
        for the socket to bind as a source address before making the connection.
        An host of '' or port 0 tells the OS to use the default.
        """
    
        host, port = address
        if host.startswith("["):
            host = host.strip("[]")
        err = None
    
        # Using the value from allowed_gai_family() in the context of getaddrinfo lets
        # us select whether to work with IPv4 DNS records, IPv6 records, or both.
        # The original create_connection function always returns all records.
        family = allowed_gai_family()
    
        try:
            host.encode("idna")
        except UnicodeError:
            return six.raise_from(
                LocationParseError(u"'%s', label empty or too long" % host), None
            )
    
        for res in socket.getaddrinfo(host, port, family, socket.SOCK_STREAM):
            af, socktype, proto, canonname, sa = res
            sock = None
            try:
                sock = socket.socket(af, socktype, proto)
    
                # If provided, set socket level options before connecting.
                _set_socket_options(sock, socket_options)
    
                if timeout is not socket._GLOBAL_DEFAULT_TIMEOUT:
                    sock.settimeout(timeout)
                if source_address:
                    sock.bind(source_address)
>               sock.connect(sa)
E               TimeoutError: [Errno 110] Connection timed out

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/util/connection.py:86: TimeoutError

During handling of the above exception, another exception occurred:

self = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754ad80d30>
method = 'POST'
url = '/api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf'
body = b'{"query": {"term": {"pennsieve.identifier.aggregate": "44"}}}'
headers = {'User-Agent': 'python-requests/2.25.1', 'Accept-Encoding': 'gzip, deflate', 'Accept': '*/*', 'Connection': 'keep-alive', 'Content-Length': '61', 'Content-Type': 'application/json'}
retries = Retry(total=0, connect=None, read=False, redirect=None, status=None)
redirect = False, assert_same_host = False
timeout = Timeout(connect=None, read=None, total=None), pool_timeout = None
release_conn = False, chunked = False, body_pos = None
response_kw = {'decode_content': False, 'preload_content': False}
parsed_url = Url(scheme=None, auth=None, host=None, port=None, path='/api/1/elastic/SPARC_PortalDatasets_dev/_search', query='api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf', fragment=None)
destination_scheme = None, conn = None, release_this_conn = True
http_tunnel_required = False, err = None, clean_exit = False

    def urlopen(
        self,
        method,
        url,
        body=None,
        headers=None,
        retries=None,
        redirect=True,
        assert_same_host=True,
        timeout=_Default,
        pool_timeout=None,
        release_conn=None,
        chunked=False,
        body_pos=None,
        **response_kw
    ):
        """
        Get a connection from the pool and perform an HTTP request. This is the
        lowest level call for making a request, so you'll need to specify all
        the raw details.
    
        .. note::
    
           More commonly, it's appropriate to use a convenience method provided
           by :class:`.RequestMethods`, such as :meth:`request`.
    
        .. note::
    
           `release_conn` will only behave as expected if
           `preload_content=False` because we want to make
           `preload_content=False` the default behaviour someday soon without
           breaking backwards compatibility.
    
        :param method:
            HTTP request method (such as GET, POST, PUT, etc.)
    
        :param url:
            The URL to perform the request on.
    
        :param body:
            Data to send in the request body, either :class:`str`, :class:`bytes`,
            an iterable of :class:`str`/:class:`bytes`, or a file-like object.
    
        :param headers:
            Dictionary of custom headers to send, such as User-Agent,
            If-None-Match, etc. If None, pool headers are used. If provided,
            these headers completely replace any pool-specific headers.
    
        :param retries:
            Configure the number of retries to allow before raising a
            :class:`~urllib3.exceptions.MaxRetryError` exception.
    
            Pass ``None`` to retry until you receive a response. Pass a
            :class:`~urllib3.util.retry.Retry` object for fine-grained control
            over different types of retries.
            Pass an integer number to retry connection errors that many times,
            but no other types of errors. Pass zero to never retry.
    
            If ``False``, then retries are disabled and any exception is raised
            immediately. Also, instead of raising a MaxRetryError on redirects,
            the redirect response will be returned.
    
        :type retries: :class:`~urllib3.util.retry.Retry`, False, or an int.
    
        :param redirect:
            If True, automatically handle redirects (status codes 301, 302,
            303, 307, 308). Each redirect counts as a retry. Disabling retries
            will disable redirect, too.
    
        :param assert_same_host:
            If ``True``, will make sure that the host of the pool requests is
            consistent else will raise HostChangedError. When ``False``, you can
            use the pool on an HTTP proxy and request foreign hosts.
    
        :param timeout:
            If specified, overrides the default timeout for this one
            request. It may be a float (in seconds) or an instance of
            :class:`urllib3.util.Timeout`.
    
        :param pool_timeout:
            If set and the pool is set to block=True, then this method will
            block for ``pool_timeout`` seconds and raise EmptyPoolError if no
            connection is available within the time period.
    
        :param release_conn:
            If False, then the urlopen call will not release the connection
            back into the pool once a response is received (but will release if
            you read the entire contents of the response such as when
            `preload_content=True`). This is useful if you're not preloading
            the response's content immediately. You will need to call
            ``r.release_conn()`` on the response ``r`` to return the connection
            back into the pool. If None, it takes the value of
            ``response_kw.get('preload_content', True)``.
    
        :param chunked:
            If True, urllib3 will send the body using chunked transfer
            encoding. Otherwise, urllib3 will send the body using the standard
            content-length form. Defaults to False.
    
        :param int body_pos:
            Position to seek to in file-like body in the event of a retry or
            redirect. Typically this won't need to be set because urllib3 will
            auto-populate the value when needed.
    
        :param \\**response_kw:
            Additional parameters are passed to
            :meth:`urllib3.response.HTTPResponse.from_httplib`
        """
    
        parsed_url = parse_url(url)
        destination_scheme = parsed_url.scheme
    
        if headers is None:
            headers = self.headers
    
        if not isinstance(retries, Retry):
            retries = Retry.from_int(retries, redirect=redirect, default=self.retries)
    
        if release_conn is None:
            release_conn = response_kw.get("preload_content", True)
    
        # Check host
        if assert_same_host and not self.is_same_host(url):
            raise HostChangedError(self, url, retries)
    
        # Ensure that the URL we're connecting to is properly encoded
        if url.startswith("/"):
            url = six.ensure_str(_encode_target(url))
        else:
            url = six.ensure_str(parsed_url.url)
    
        conn = None
    
        # Track whether `conn` needs to be released before
        # returning/raising/recursing. Update this variable if necessary, and
        # leave `release_conn` constant throughout the function. That way, if
        # the function recurses, the original value of `release_conn` will be
        # passed down into the recursive call, and its value will be respected.
        #
        # See issue #651 [1] for details.
        #
        # [1] <https://github.com/urllib3/urllib3/issues/651>
        release_this_conn = release_conn
    
        http_tunnel_required = connection_requires_http_tunnel(
            self.proxy, self.proxy_config, destination_scheme
        )
    
        # Merge the proxy headers. Only done when not using HTTP CONNECT. We
        # have to copy the headers dict so we can safely change it without those
        # changes being reflected in anyone else's copy.
        if not http_tunnel_required:
            headers = headers.copy()
            headers.update(self.proxy_headers)
    
        # Must keep the exception bound to a separate variable or else Python 3
        # complains about UnboundLocalError.
        err = None
    
        # Keep track of whether we cleanly exited the except block. This
        # ensures we do proper cleanup in finally.
        clean_exit = False
    
        # Rewind body position, if needed. Record current position
        # for future rewinds in the event of a redirect/retry.
        body_pos = set_file_position(body, body_pos)
    
        try:
            # Request a connection from the queue.
            timeout_obj = self._get_timeout(timeout)
            conn = self._get_conn(timeout=pool_timeout)
    
            conn.timeout = timeout_obj.connect_timeout
    
            is_new_proxy_conn = self.proxy is not None and not getattr(
                conn, "sock", None
            )
            if is_new_proxy_conn and http_tunnel_required:
                self._prepare_proxy(conn)
    
            # Make the request on the httplib connection object.
>           httplib_response = self._make_request(
                conn,
                method,
                url,
                timeout=timeout_obj,
                body=body,
                headers=headers,
                chunked=chunked,
            )

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py:699: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754ad80d30>
conn = <urllib3.connection.HTTPSConnection object at 0x7f754a55fa60>
method = 'POST'
url = '/api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf'
timeout = Timeout(connect=None, read=None, total=None), chunked = False
httplib_request_kw = {'body': b'{"query": {"term": {"pennsieve.identifier.aggregate": "44"}}}', 'headers': {'User-Agent': 'python-requests/...ip, deflate', 'Accept': '*/*', 'Connection': 'keep-alive', 'Content-Length': '61', 'Content-Type': 'application/json'}}
timeout_obj = Timeout(connect=None, read=None, total=None)

    def _make_request(
        self, conn, method, url, timeout=_Default, chunked=False, **httplib_request_kw
    ):
        """
        Perform a request on a given urllib connection object taken from our
        pool.
    
        :param conn:
            a connection from one of our connection pools
    
        :param timeout:
            Socket timeout in seconds for the request. This can be a
            float or integer, which will set the same timeout value for
            the socket connect and the socket read, or an instance of
            :class:`urllib3.util.Timeout`, which gives you more fine-grained
            control over your timeouts.
        """
        self.num_requests += 1
    
        timeout_obj = self._get_timeout(timeout)
        timeout_obj.start_connect()
        conn.timeout = timeout_obj.connect_timeout
    
        # Trigger any extra validation we need to do.
        try:
>           self._validate_conn(conn)

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py:382: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754ad80d30>
conn = <urllib3.connection.HTTPSConnection object at 0x7f754a55fa60>

    def _validate_conn(self, conn):
        """
        Called right before a request is made, after the socket is created.
        """
        super(HTTPSConnectionPool, self)._validate_conn(conn)
    
        # Force connect early to allow us to validate the connection.
        if not getattr(conn, "sock", None):  # AppEngine might not have  `.sock`
>           conn.connect()

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py:1010: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connection.HTTPSConnection object at 0x7f754a55fa60>

    def connect(self):
        # Add certificate verification
>       conn = self._new_conn()

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connection.py:353: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connection.HTTPSConnection object at 0x7f754a55fa60>

    def _new_conn(self):
        """Establish a socket connection and set nodelay settings on it.
    
        :return: New socket connection.
        """
        extra_kw = {}
        if self.source_address:
            extra_kw["source_address"] = self.source_address
    
        if self.socket_options:
            extra_kw["socket_options"] = self.socket_options
    
        try:
            conn = connection.create_connection(
                (self._dns_host, self.port), self.timeout, **extra_kw
            )
    
        except SocketTimeout:
            raise ConnectTimeoutError(
                self,
                "Connection to %s timed out. (connect timeout=%s)"
                % (self.host, self.timeout),
            )
    
        except SocketError as e:
>           raise NewConnectionError(
                self, "Failed to establish a new connection: %s" % e
            )
E           urllib3.exceptions.NewConnectionError: <urllib3.connection.HTTPSConnection object at 0x7f754a55fa60>: Failed to establish a new connection: [Errno 110] Connection timed out

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connection.py:181: NewConnectionError

During handling of the above exception, another exception occurred:

self = <requests.adapters.HTTPAdapter object at 0x7f754ad80c70>
request = <PreparedRequest [POST]>, stream = False
timeout = Timeout(connect=None, read=None, total=None), verify = True
cert = None, proxies = OrderedDict()

    def send(self, request, stream=False, timeout=None, verify=True, cert=None, proxies=None):
        """Sends PreparedRequest object. Returns Response object.
    
        :param request: The :class:`PreparedRequest <PreparedRequest>` being sent.
        :param stream: (optional) Whether to stream the request content.
        :param timeout: (optional) How long to wait for the server to send
            data before giving up, as a float, or a :ref:`(connect timeout,
            read timeout) <timeouts>` tuple.
        :type timeout: float or tuple or urllib3 Timeout object
        :param verify: (optional) Either a boolean, in which case it controls whether
            we verify the server's TLS certificate, or a string, in which case it
            must be a path to a CA bundle to use
        :param cert: (optional) Any user-provided SSL certificate to be trusted.
        :param proxies: (optional) The proxies dictionary to apply to the request.
        :rtype: requests.Response
        """
    
        try:
            conn = self.get_connection(request.url, proxies)
        except LocationValueError as e:
            raise InvalidURL(e, request=request)
    
        self.cert_verify(conn, request.url, verify, cert)
        url = self.request_url(request, proxies)
        self.add_headers(request, stream=stream, timeout=timeout, verify=verify, cert=cert, proxies=proxies)
    
        chunked = not (request.body is None or 'Content-Length' in request.headers)
    
        if isinstance(timeout, tuple):
            try:
                connect, read = timeout
                timeout = TimeoutSauce(connect=connect, read=read)
            except ValueError as e:
                # this may raise a string formatting error.
                err = ("Invalid timeout {}. Pass a (connect, read) "
                       "timeout tuple, or a single float to set "
                       "both timeouts to the same value".format(timeout))
                raise ValueError(err)
        elif isinstance(timeout, TimeoutSauce):
            pass
        else:
            timeout = TimeoutSauce(connect=timeout, read=timeout)
    
        try:
            if not chunked:
>               resp = conn.urlopen(
                    method=request.method,
                    url=url,
                    body=request.body,
                    headers=request.headers,
                    redirect=False,
                    assert_same_host=False,
                    preload_content=False,
                    decode_content=False,
                    retries=self.max_retries,
                    timeout=timeout
                )

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/adapters.py:439: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754ad80d30>
method = 'POST'
url = '/api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf'
body = b'{"query": {"term": {"pennsieve.identifier.aggregate": "44"}}}'
headers = {'User-Agent': 'python-requests/2.25.1', 'Accept-Encoding': 'gzip, deflate', 'Accept': '*/*', 'Connection': 'keep-alive', 'Content-Length': '61', 'Content-Type': 'application/json'}
retries = Retry(total=0, connect=None, read=False, redirect=None, status=None)
redirect = False, assert_same_host = False
timeout = Timeout(connect=None, read=None, total=None), pool_timeout = None
release_conn = False, chunked = False, body_pos = None
response_kw = {'decode_content': False, 'preload_content': False}
parsed_url = Url(scheme=None, auth=None, host=None, port=None, path='/api/1/elastic/SPARC_PortalDatasets_dev/_search', query='api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf', fragment=None)
destination_scheme = None, conn = None, release_this_conn = True
http_tunnel_required = False, err = None, clean_exit = False

    def urlopen(
        self,
        method,
        url,
        body=None,
        headers=None,
        retries=None,
        redirect=True,
        assert_same_host=True,
        timeout=_Default,
        pool_timeout=None,
        release_conn=None,
        chunked=False,
        body_pos=None,
        **response_kw
    ):
        """
        Get a connection from the pool and perform an HTTP request. This is the
        lowest level call for making a request, so you'll need to specify all
        the raw details.
    
        .. note::
    
           More commonly, it's appropriate to use a convenience method provided
           by :class:`.RequestMethods`, such as :meth:`request`.
    
        .. note::
    
           `release_conn` will only behave as expected if
           `preload_content=False` because we want to make
           `preload_content=False` the default behaviour someday soon without
           breaking backwards compatibility.
    
        :param method:
            HTTP request method (such as GET, POST, PUT, etc.)
    
        :param url:
            The URL to perform the request on.
    
        :param body:
            Data to send in the request body, either :class:`str`, :class:`bytes`,
            an iterable of :class:`str`/:class:`bytes`, or a file-like object.
    
        :param headers:
            Dictionary of custom headers to send, such as User-Agent,
            If-None-Match, etc. If None, pool headers are used. If provided,
            these headers completely replace any pool-specific headers.
    
        :param retries:
            Configure the number of retries to allow before raising a
            :class:`~urllib3.exceptions.MaxRetryError` exception.
    
            Pass ``None`` to retry until you receive a response. Pass a
            :class:`~urllib3.util.retry.Retry` object for fine-grained control
            over different types of retries.
            Pass an integer number to retry connection errors that many times,
            but no other types of errors. Pass zero to never retry.
    
            If ``False``, then retries are disabled and any exception is raised
            immediately. Also, instead of raising a MaxRetryError on redirects,
            the redirect response will be returned.
    
        :type retries: :class:`~urllib3.util.retry.Retry`, False, or an int.
    
        :param redirect:
            If True, automatically handle redirects (status codes 301, 302,
            303, 307, 308). Each redirect counts as a retry. Disabling retries
            will disable redirect, too.
    
        :param assert_same_host:
            If ``True``, will make sure that the host of the pool requests is
            consistent else will raise HostChangedError. When ``False``, you can
            use the pool on an HTTP proxy and request foreign hosts.
    
        :param timeout:
            If specified, overrides the default timeout for this one
            request. It may be a float (in seconds) or an instance of
            :class:`urllib3.util.Timeout`.
    
        :param pool_timeout:
            If set and the pool is set to block=True, then this method will
            block for ``pool_timeout`` seconds and raise EmptyPoolError if no
            connection is available within the time period.
    
        :param release_conn:
            If False, then the urlopen call will not release the connection
            back into the pool once a response is received (but will release if
            you read the entire contents of the response such as when
            `preload_content=True`). This is useful if you're not preloading
            the response's content immediately. You will need to call
            ``r.release_conn()`` on the response ``r`` to return the connection
            back into the pool. If None, it takes the value of
            ``response_kw.get('preload_content', True)``.
    
        :param chunked:
            If True, urllib3 will send the body using chunked transfer
            encoding. Otherwise, urllib3 will send the body using the standard
            content-length form. Defaults to False.
    
        :param int body_pos:
            Position to seek to in file-like body in the event of a retry or
            redirect. Typically this won't need to be set because urllib3 will
            auto-populate the value when needed.
    
        :param \\**response_kw:
            Additional parameters are passed to
            :meth:`urllib3.response.HTTPResponse.from_httplib`
        """
    
        parsed_url = parse_url(url)
        destination_scheme = parsed_url.scheme
    
        if headers is None:
            headers = self.headers
    
        if not isinstance(retries, Retry):
            retries = Retry.from_int(retries, redirect=redirect, default=self.retries)
    
        if release_conn is None:
            release_conn = response_kw.get("preload_content", True)
    
        # Check host
        if assert_same_host and not self.is_same_host(url):
            raise HostChangedError(self, url, retries)
    
        # Ensure that the URL we're connecting to is properly encoded
        if url.startswith("/"):
            url = six.ensure_str(_encode_target(url))
        else:
            url = six.ensure_str(parsed_url.url)
    
        conn = None
    
        # Track whether `conn` needs to be released before
        # returning/raising/recursing. Update this variable if necessary, and
        # leave `release_conn` constant throughout the function. That way, if
        # the function recurses, the original value of `release_conn` will be
        # passed down into the recursive call, and its value will be respected.
        #
        # See issue #651 [1] for details.
        #
        # [1] <https://github.com/urllib3/urllib3/issues/651>
        release_this_conn = release_conn
    
        http_tunnel_required = connection_requires_http_tunnel(
            self.proxy, self.proxy_config, destination_scheme
        )
    
        # Merge the proxy headers. Only done when not using HTTP CONNECT. We
        # have to copy the headers dict so we can safely change it without those
        # changes being reflected in anyone else's copy.
        if not http_tunnel_required:
            headers = headers.copy()
            headers.update(self.proxy_headers)
    
        # Must keep the exception bound to a separate variable or else Python 3
        # complains about UnboundLocalError.
        err = None
    
        # Keep track of whether we cleanly exited the except block. This
        # ensures we do proper cleanup in finally.
        clean_exit = False
    
        # Rewind body position, if needed. Record current position
        # for future rewinds in the event of a redirect/retry.
        body_pos = set_file_position(body, body_pos)
    
        try:
            # Request a connection from the queue.
            timeout_obj = self._get_timeout(timeout)
            conn = self._get_conn(timeout=pool_timeout)
    
            conn.timeout = timeout_obj.connect_timeout
    
            is_new_proxy_conn = self.proxy is not None and not getattr(
                conn, "sock", None
            )
            if is_new_proxy_conn and http_tunnel_required:
                self._prepare_proxy(conn)
    
            # Make the request on the httplib connection object.
            httplib_response = self._make_request(
                conn,
                method,
                url,
                timeout=timeout_obj,
                body=body,
                headers=headers,
                chunked=chunked,
            )
    
            # If we're going to release the connection in ``finally:``, then
            # the response doesn't need to know about the connection. Otherwise
            # it will also try to release it and we'll have a double-release
            # mess.
            response_conn = conn if not release_conn else None
    
            # Pass method to Response for length checking
            response_kw["request_method"] = method
    
            # Import httplib's response into our own wrapper object
            response = self.ResponseCls.from_httplib(
                httplib_response,
                pool=self,
                connection=response_conn,
                retries=retries,
                **response_kw
            )
    
            # Everything went great!
            clean_exit = True
    
        except EmptyPoolError:
            # Didn't get a connection from the pool, no need to clean up
            clean_exit = True
            release_this_conn = False
            raise
    
        except (
            TimeoutError,
            HTTPException,
            SocketError,
            ProtocolError,
            BaseSSLError,
            SSLError,
            CertificateError,
        ) as e:
            # Discard the connection for these exceptions. It will be
            # replaced during the next _get_conn() call.
            clean_exit = False
            if isinstance(e, (BaseSSLError, CertificateError)):
                e = SSLError(e)
            elif isinstance(e, (SocketError, NewConnectionError)) and self.proxy:
                e = ProxyError("Cannot connect to proxy.", e)
            elif isinstance(e, (SocketError, HTTPException)):
                e = ProtocolError("Connection aborted.", e)
    
>           retries = retries.increment(
                method, url, error=e, _pool=self, _stacktrace=sys.exc_info()[2]
            )

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py:755: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = Retry(total=0, connect=None, read=False, redirect=None, status=None)
method = 'POST'
url = '/api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf'
response = None
error = NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7f754a55fa60>: Failed to establish a new connection: [Errno 110] Connection timed out')
_pool = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754ad80d30>
_stacktrace = <traceback object at 0x7f754ac5f7c0>

    def increment(
        self,
        method=None,
        url=None,
        response=None,
        error=None,
        _pool=None,
        _stacktrace=None,
    ):
        """Return a new Retry object with incremented retry counters.
    
        :param response: A response object, or None, if the server did not
            return a response.
        :type response: :class:`~urllib3.response.HTTPResponse`
        :param Exception error: An error encountered during the request, or
            None if the response was received successfully.
    
        :return: A new ``Retry`` object.
        """
        if self.total is False and error:
            # Disabled, indicate to re-raise the error.
            raise six.reraise(type(error), error, _stacktrace)
    
        total = self.total
        if total is not None:
            total -= 1
    
        connect = self.connect
        read = self.read
        redirect = self.redirect
        status_count = self.status
        other = self.other
        cause = "unknown"
        status = None
        redirect_location = None
    
        if error and self._is_connection_error(error):
            # Connect retry?
            if connect is False:
                raise six.reraise(type(error), error, _stacktrace)
            elif connect is not None:
                connect -= 1
    
        elif error and self._is_read_error(error):
            # Read retry?
            if read is False or not self._is_method_retryable(method):
                raise six.reraise(type(error), error, _stacktrace)
            elif read is not None:
                read -= 1
    
        elif error:
            # Other retry?
            if other is not None:
                other -= 1
    
        elif response and response.get_redirect_location():
            # Redirect retry?
            if redirect is not None:
                redirect -= 1
            cause = "too many redirects"
            redirect_location = response.get_redirect_location()
            status = response.status
    
        else:
            # Incrementing because of a server error like a 500 in
            # status_forcelist and the given method is in the allowed_methods
            cause = ResponseError.GENERIC_ERROR
            if response and response.status:
                if status_count is not None:
                    status_count -= 1
                cause = ResponseError.SPECIFIC_ERROR.format(status_code=response.status)
                status = response.status
    
        history = self.history + (
            RequestHistory(method, url, error, status, redirect_location),
        )
    
        new_retry = self.new(
            total=total,
            connect=connect,
            read=read,
            redirect=redirect,
            status=status_count,
            other=other,
            history=history,
        )
    
        if new_retry.is_exhausted():
>           raise MaxRetryError(_pool, url, error or ResponseError(cause))
E           urllib3.exceptions.MaxRetryError: HTTPSConnectionPool(host='scicrunch.org', port=443): Max retries exceeded with url: /api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7f754a55fa60>: Failed to establish a new connection: [Errno 110] Connection timed out'))

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/util/retry.py:574: MaxRetryError

During handling of the above exception, another exception occurred:

client = <FlaskClient <Flask 'app.main'>>

    def test_response_version(client):
        # Testing with dataset 44
        identifier = "44"
        doi = "10.26275/duz8-mq3n"
>       run_doi_test = check_doi_status(client, identifier, doi)

tests/test_scicrunch.py:206: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
tests/test_scicrunch.py:53: in check_doi_status
    r = client.get('/dataset_info/using_pennsieve_identifier', query_string={'identifier': dataset_id})
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/werkzeug/test.py:1029: in get
    return self.open(*args, **kw)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/testing.py:222: in open
    return Client.open(
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/werkzeug/test.py:993: in open
    response = self.run_wsgi_app(environ.copy(), buffered=buffered)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/werkzeug/test.py:884: in run_wsgi_app
    rv = run_wsgi_app(self.application, environ, buffered=buffered)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/werkzeug/test.py:1119: in run_wsgi_app
    app_rv = app(environ, start_response)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:2463: in __call__
    return self.wsgi_app(environ, start_response)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:2449: in wsgi_app
    response = self.handle_exception(e)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask_cors/extension.py:161: in wrapped_function
    return cors_after_request(app.make_response(f(*args, **kwargs)))
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1866: in handle_exception
    reraise(exc_type, exc_value, tb)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/_compat.py:39: in reraise
    raise value
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:2446: in wsgi_app
    response = self.full_dispatch_request()
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1951: in full_dispatch_request
    rv = self.handle_user_exception(e)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask_cors/extension.py:161: in wrapped_function
    return cors_after_request(app.make_response(f(*args, **kwargs)))
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1820: in handle_user_exception
    reraise(exc_type, exc_value, tb)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/_compat.py:39: in reraise
    raise value
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1949: in full_dispatch_request
    rv = self.dispatch_request()
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1935: in dispatch_request
    return self.view_functions[rule.endpoint](**req.view_args)
app/main.py:602: in get_dataset_info_pennsieve_identifier
    return reform_dataset_results(dataset_search(query))
app/main.py:663: in dataset_search
    response = requests.post(f'{Config.SCI_CRUNCH_HOST}/_search',
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/api.py:119: in post
    return request('post', url, data=data, json=json, **kwargs)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/api.py:61: in request
    return session.request(method=method, url=url, **kwargs)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/sessions.py:542: in request
    resp = self.send(prep, **send_kwargs)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/sessions.py:655: in send
    r = adapter.send(request, **kwargs)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <requests.adapters.HTTPAdapter object at 0x7f754ad80c70>
request = <PreparedRequest [POST]>, stream = False
timeout = Timeout(connect=None, read=None, total=None), verify = True
cert = None, proxies = OrderedDict()

    def send(self, request, stream=False, timeout=None, verify=True, cert=None, proxies=None):
        """Sends PreparedRequest object. Returns Response object.
    
        :param request: The :class:`PreparedRequest <PreparedRequest>` being sent.
        :param stream: (optional) Whether to stream the request content.
        :param timeout: (optional) How long to wait for the server to send
            data before giving up, as a float, or a :ref:`(connect timeout,
            read timeout) <timeouts>` tuple.
        :type timeout: float or tuple or urllib3 Timeout object
        :param verify: (optional) Either a boolean, in which case it controls whether
            we verify the server's TLS certificate, or a string, in which case it
            must be a path to a CA bundle to use
        :param cert: (optional) Any user-provided SSL certificate to be trusted.
        :param proxies: (optional) The proxies dictionary to apply to the request.
        :rtype: requests.Response
        """
    
        try:
            conn = self.get_connection(request.url, proxies)
        except LocationValueError as e:
            raise InvalidURL(e, request=request)
    
        self.cert_verify(conn, request.url, verify, cert)
        url = self.request_url(request, proxies)
        self.add_headers(request, stream=stream, timeout=timeout, verify=verify, cert=cert, proxies=proxies)
    
        chunked = not (request.body is None or 'Content-Length' in request.headers)
    
        if isinstance(timeout, tuple):
            try:
                connect, read = timeout
                timeout = TimeoutSauce(connect=connect, read=read)
            except ValueError as e:
                # this may raise a string formatting error.
                err = ("Invalid timeout {}. Pass a (connect, read) "
                       "timeout tuple, or a single float to set "
                       "both timeouts to the same value".format(timeout))
                raise ValueError(err)
        elif isinstance(timeout, TimeoutSauce):
            pass
        else:
            timeout = TimeoutSauce(connect=timeout, read=timeout)
    
        try:
            if not chunked:
                resp = conn.urlopen(
                    method=request.method,
                    url=url,
                    body=request.body,
                    headers=request.headers,
                    redirect=False,
                    assert_same_host=False,
                    preload_content=False,
                    decode_content=False,
                    retries=self.max_retries,
                    timeout=timeout
                )
    
            # Send the request.
            else:
                if hasattr(conn, 'proxy_pool'):
                    conn = conn.proxy_pool
    
                low_conn = conn._get_conn(timeout=DEFAULT_POOL_TIMEOUT)
    
                try:
                    low_conn.putrequest(request.method,
                                        url,
                                        skip_accept_encoding=True)
    
                    for header, value in request.headers.items():
                        low_conn.putheader(header, value)
    
                    low_conn.endheaders()
    
                    for i in request.body:
                        low_conn.send(hex(len(i))[2:].encode('utf-8'))
                        low_conn.send(b'\r\n')
                        low_conn.send(i)
                        low_conn.send(b'\r\n')
                    low_conn.send(b'0\r\n\r\n')
    
                    # Receive the response from the server
                    try:
                        # For Python 2.7, use buffering of HTTP responses
                        r = low_conn.getresponse(buffering=True)
                    except TypeError:
                        # For compatibility with Python 3.3+
                        r = low_conn.getresponse()
    
                    resp = HTTPResponse.from_httplib(
                        r,
                        pool=conn,
                        connection=low_conn,
                        preload_content=False,
                        decode_content=False
                    )
                except:
                    # If we hit any problems here, clean up the connection.
                    # Then, reraise so that we can handle the actual exception.
                    low_conn.close()
                    raise
    
        except (ProtocolError, socket.error) as err:
            raise ConnectionError(err, request=request)
    
        except MaxRetryError as e:
            if isinstance(e.reason, ConnectTimeoutError):
                # TODO: Remove this in 3.0.0: see #2811
                if not isinstance(e.reason, NewConnectionError):
                    raise ConnectTimeout(e, request=request)
    
            if isinstance(e.reason, ResponseError):
                raise RetryError(e, request=request)
    
            if isinstance(e.reason, _ProxyError):
                raise ProxyError(e, request=request)
    
            if isinstance(e.reason, _SSLError):
                # This branch is for urllib3 v1.22 and later.
                raise SSLError(e, request=request)
    
>           raise ConnectionError(e, request=request)
E           requests.exceptions.ConnectionError: HTTPSConnectionPool(host='scicrunch.org', port=443): Max retries exceeded with url: /api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7f754a55fa60>: Failed to establish a new connection: [Errno 110] Connection timed out'))

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/adapters.py:516: ConnectionError
----------------------------- Captured stdout call -----------------------------
Error while setting featured dataset id:  Method not allowed with this API key
____________________________ test_response_abi_plot ____________________________

self = <urllib3.connection.HTTPSConnection object at 0x7f754a3a9910>

    def _new_conn(self):
        """Establish a socket connection and set nodelay settings on it.
    
        :return: New socket connection.
        """
        extra_kw = {}
        if self.source_address:
            extra_kw["source_address"] = self.source_address
    
        if self.socket_options:
            extra_kw["socket_options"] = self.socket_options
    
        try:
>           conn = connection.create_connection(
                (self._dns_host, self.port), self.timeout, **extra_kw
            )

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connection.py:169: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

address = ('scicrunch.org', 443), timeout = None, source_address = None
socket_options = [(6, 1, 1)]

    def create_connection(
        address,
        timeout=socket._GLOBAL_DEFAULT_TIMEOUT,
        source_address=None,
        socket_options=None,
    ):
        """Connect to *address* and return the socket object.
    
        Convenience function.  Connect to *address* (a 2-tuple ``(host,
        port)``) and return the socket object.  Passing the optional
        *timeout* parameter will set the timeout on the socket instance
        before attempting to connect.  If no *timeout* is supplied, the
        global default timeout setting returned by :func:`socket.getdefaulttimeout`
        is used.  If *source_address* is set it must be a tuple of (host, port)
        for the socket to bind as a source address before making the connection.
        An host of '' or port 0 tells the OS to use the default.
        """
    
        host, port = address
        if host.startswith("["):
            host = host.strip("[]")
        err = None
    
        # Using the value from allowed_gai_family() in the context of getaddrinfo lets
        # us select whether to work with IPv4 DNS records, IPv6 records, or both.
        # The original create_connection function always returns all records.
        family = allowed_gai_family()
    
        try:
            host.encode("idna")
        except UnicodeError:
            return six.raise_from(
                LocationParseError(u"'%s', label empty or too long" % host), None
            )
    
        for res in socket.getaddrinfo(host, port, family, socket.SOCK_STREAM):
            af, socktype, proto, canonname, sa = res
            sock = None
            try:
                sock = socket.socket(af, socktype, proto)
    
                # If provided, set socket level options before connecting.
                _set_socket_options(sock, socket_options)
    
                if timeout is not socket._GLOBAL_DEFAULT_TIMEOUT:
                    sock.settimeout(timeout)
                if source_address:
                    sock.bind(source_address)
                sock.connect(sa)
                return sock
    
            except socket.error as e:
                err = e
                if sock is not None:
                    sock.close()
                    sock = None
    
        if err is not None:
>           raise err

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/util/connection.py:96: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

address = ('scicrunch.org', 443), timeout = None, source_address = None
socket_options = [(6, 1, 1)]

    def create_connection(
        address,
        timeout=socket._GLOBAL_DEFAULT_TIMEOUT,
        source_address=None,
        socket_options=None,
    ):
        """Connect to *address* and return the socket object.
    
        Convenience function.  Connect to *address* (a 2-tuple ``(host,
        port)``) and return the socket object.  Passing the optional
        *timeout* parameter will set the timeout on the socket instance
        before attempting to connect.  If no *timeout* is supplied, the
        global default timeout setting returned by :func:`socket.getdefaulttimeout`
        is used.  If *source_address* is set it must be a tuple of (host, port)
        for the socket to bind as a source address before making the connection.
        An host of '' or port 0 tells the OS to use the default.
        """
    
        host, port = address
        if host.startswith("["):
            host = host.strip("[]")
        err = None
    
        # Using the value from allowed_gai_family() in the context of getaddrinfo lets
        # us select whether to work with IPv4 DNS records, IPv6 records, or both.
        # The original create_connection function always returns all records.
        family = allowed_gai_family()
    
        try:
            host.encode("idna")
        except UnicodeError:
            return six.raise_from(
                LocationParseError(u"'%s', label empty or too long" % host), None
            )
    
        for res in socket.getaddrinfo(host, port, family, socket.SOCK_STREAM):
            af, socktype, proto, canonname, sa = res
            sock = None
            try:
                sock = socket.socket(af, socktype, proto)
    
                # If provided, set socket level options before connecting.
                _set_socket_options(sock, socket_options)
    
                if timeout is not socket._GLOBAL_DEFAULT_TIMEOUT:
                    sock.settimeout(timeout)
                if source_address:
                    sock.bind(source_address)
>               sock.connect(sa)
E               TimeoutError: [Errno 110] Connection timed out

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/util/connection.py:86: TimeoutError

During handling of the above exception, another exception occurred:

self = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754a3f5850>
method = 'POST'
url = '/api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf'
body = b'{"query": {"term": {"pennsieve.identifier.aggregate": "212"}}}'
headers = {'User-Agent': 'python-requests/2.25.1', 'Accept-Encoding': 'gzip, deflate', 'Accept': '*/*', 'Connection': 'keep-alive', 'Content-Length': '62', 'Content-Type': 'application/json'}
retries = Retry(total=0, connect=None, read=False, redirect=None, status=None)
redirect = False, assert_same_host = False
timeout = Timeout(connect=None, read=None, total=None), pool_timeout = None
release_conn = False, chunked = False, body_pos = None
response_kw = {'decode_content': False, 'preload_content': False}
parsed_url = Url(scheme=None, auth=None, host=None, port=None, path='/api/1/elastic/SPARC_PortalDatasets_dev/_search', query='api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf', fragment=None)
destination_scheme = None, conn = None, release_this_conn = True
http_tunnel_required = False, err = None, clean_exit = False

    def urlopen(
        self,
        method,
        url,
        body=None,
        headers=None,
        retries=None,
        redirect=True,
        assert_same_host=True,
        timeout=_Default,
        pool_timeout=None,
        release_conn=None,
        chunked=False,
        body_pos=None,
        **response_kw
    ):
        """
        Get a connection from the pool and perform an HTTP request. This is the
        lowest level call for making a request, so you'll need to specify all
        the raw details.
    
        .. note::
    
           More commonly, it's appropriate to use a convenience method provided
           by :class:`.RequestMethods`, such as :meth:`request`.
    
        .. note::
    
           `release_conn` will only behave as expected if
           `preload_content=False` because we want to make
           `preload_content=False` the default behaviour someday soon without
           breaking backwards compatibility.
    
        :param method:
            HTTP request method (such as GET, POST, PUT, etc.)
    
        :param url:
            The URL to perform the request on.
    
        :param body:
            Data to send in the request body, either :class:`str`, :class:`bytes`,
            an iterable of :class:`str`/:class:`bytes`, or a file-like object.
    
        :param headers:
            Dictionary of custom headers to send, such as User-Agent,
            If-None-Match, etc. If None, pool headers are used. If provided,
            these headers completely replace any pool-specific headers.
    
        :param retries:
            Configure the number of retries to allow before raising a
            :class:`~urllib3.exceptions.MaxRetryError` exception.
    
            Pass ``None`` to retry until you receive a response. Pass a
            :class:`~urllib3.util.retry.Retry` object for fine-grained control
            over different types of retries.
            Pass an integer number to retry connection errors that many times,
            but no other types of errors. Pass zero to never retry.
    
            If ``False``, then retries are disabled and any exception is raised
            immediately. Also, instead of raising a MaxRetryError on redirects,
            the redirect response will be returned.
    
        :type retries: :class:`~urllib3.util.retry.Retry`, False, or an int.
    
        :param redirect:
            If True, automatically handle redirects (status codes 301, 302,
            303, 307, 308). Each redirect counts as a retry. Disabling retries
            will disable redirect, too.
    
        :param assert_same_host:
            If ``True``, will make sure that the host of the pool requests is
            consistent else will raise HostChangedError. When ``False``, you can
            use the pool on an HTTP proxy and request foreign hosts.
    
        :param timeout:
            If specified, overrides the default timeout for this one
            request. It may be a float (in seconds) or an instance of
            :class:`urllib3.util.Timeout`.
    
        :param pool_timeout:
            If set and the pool is set to block=True, then this method will
            block for ``pool_timeout`` seconds and raise EmptyPoolError if no
            connection is available within the time period.
    
        :param release_conn:
            If False, then the urlopen call will not release the connection
            back into the pool once a response is received (but will release if
            you read the entire contents of the response such as when
            `preload_content=True`). This is useful if you're not preloading
            the response's content immediately. You will need to call
            ``r.release_conn()`` on the response ``r`` to return the connection
            back into the pool. If None, it takes the value of
            ``response_kw.get('preload_content', True)``.
    
        :param chunked:
            If True, urllib3 will send the body using chunked transfer
            encoding. Otherwise, urllib3 will send the body using the standard
            content-length form. Defaults to False.
    
        :param int body_pos:
            Position to seek to in file-like body in the event of a retry or
            redirect. Typically this won't need to be set because urllib3 will
            auto-populate the value when needed.
    
        :param \\**response_kw:
            Additional parameters are passed to
            :meth:`urllib3.response.HTTPResponse.from_httplib`
        """
    
        parsed_url = parse_url(url)
        destination_scheme = parsed_url.scheme
    
        if headers is None:
            headers = self.headers
    
        if not isinstance(retries, Retry):
            retries = Retry.from_int(retries, redirect=redirect, default=self.retries)
    
        if release_conn is None:
            release_conn = response_kw.get("preload_content", True)
    
        # Check host
        if assert_same_host and not self.is_same_host(url):
            raise HostChangedError(self, url, retries)
    
        # Ensure that the URL we're connecting to is properly encoded
        if url.startswith("/"):
            url = six.ensure_str(_encode_target(url))
        else:
            url = six.ensure_str(parsed_url.url)
    
        conn = None
    
        # Track whether `conn` needs to be released before
        # returning/raising/recursing. Update this variable if necessary, and
        # leave `release_conn` constant throughout the function. That way, if
        # the function recurses, the original value of `release_conn` will be
        # passed down into the recursive call, and its value will be respected.
        #
        # See issue #651 [1] for details.
        #
        # [1] <https://github.com/urllib3/urllib3/issues/651>
        release_this_conn = release_conn
    
        http_tunnel_required = connection_requires_http_tunnel(
            self.proxy, self.proxy_config, destination_scheme
        )
    
        # Merge the proxy headers. Only done when not using HTTP CONNECT. We
        # have to copy the headers dict so we can safely change it without those
        # changes being reflected in anyone else's copy.
        if not http_tunnel_required:
            headers = headers.copy()
            headers.update(self.proxy_headers)
    
        # Must keep the exception bound to a separate variable or else Python 3
        # complains about UnboundLocalError.
        err = None
    
        # Keep track of whether we cleanly exited the except block. This
        # ensures we do proper cleanup in finally.
        clean_exit = False
    
        # Rewind body position, if needed. Record current position
        # for future rewinds in the event of a redirect/retry.
        body_pos = set_file_position(body, body_pos)
    
        try:
            # Request a connection from the queue.
            timeout_obj = self._get_timeout(timeout)
            conn = self._get_conn(timeout=pool_timeout)
    
            conn.timeout = timeout_obj.connect_timeout
    
            is_new_proxy_conn = self.proxy is not None and not getattr(
                conn, "sock", None
            )
            if is_new_proxy_conn and http_tunnel_required:
                self._prepare_proxy(conn)
    
            # Make the request on the httplib connection object.
>           httplib_response = self._make_request(
                conn,
                method,
                url,
                timeout=timeout_obj,
                body=body,
                headers=headers,
                chunked=chunked,
            )

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py:699: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754a3f5850>
conn = <urllib3.connection.HTTPSConnection object at 0x7f754a3a9910>
method = 'POST'
url = '/api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf'
timeout = Timeout(connect=None, read=None, total=None), chunked = False
httplib_request_kw = {'body': b'{"query": {"term": {"pennsieve.identifier.aggregate": "212"}}}', 'headers': {'User-Agent': 'python-requests...ip, deflate', 'Accept': '*/*', 'Connection': 'keep-alive', 'Content-Length': '62', 'Content-Type': 'application/json'}}
timeout_obj = Timeout(connect=None, read=None, total=None)

    def _make_request(
        self, conn, method, url, timeout=_Default, chunked=False, **httplib_request_kw
    ):
        """
        Perform a request on a given urllib connection object taken from our
        pool.
    
        :param conn:
            a connection from one of our connection pools
    
        :param timeout:
            Socket timeout in seconds for the request. This can be a
            float or integer, which will set the same timeout value for
            the socket connect and the socket read, or an instance of
            :class:`urllib3.util.Timeout`, which gives you more fine-grained
            control over your timeouts.
        """
        self.num_requests += 1
    
        timeout_obj = self._get_timeout(timeout)
        timeout_obj.start_connect()
        conn.timeout = timeout_obj.connect_timeout
    
        # Trigger any extra validation we need to do.
        try:
>           self._validate_conn(conn)

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py:382: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754a3f5850>
conn = <urllib3.connection.HTTPSConnection object at 0x7f754a3a9910>

    def _validate_conn(self, conn):
        """
        Called right before a request is made, after the socket is created.
        """
        super(HTTPSConnectionPool, self)._validate_conn(conn)
    
        # Force connect early to allow us to validate the connection.
        if not getattr(conn, "sock", None):  # AppEngine might not have  `.sock`
>           conn.connect()

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py:1010: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connection.HTTPSConnection object at 0x7f754a3a9910>

    def connect(self):
        # Add certificate verification
>       conn = self._new_conn()

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connection.py:353: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connection.HTTPSConnection object at 0x7f754a3a9910>

    def _new_conn(self):
        """Establish a socket connection and set nodelay settings on it.
    
        :return: New socket connection.
        """
        extra_kw = {}
        if self.source_address:
            extra_kw["source_address"] = self.source_address
    
        if self.socket_options:
            extra_kw["socket_options"] = self.socket_options
    
        try:
            conn = connection.create_connection(
                (self._dns_host, self.port), self.timeout, **extra_kw
            )
    
        except SocketTimeout:
            raise ConnectTimeoutError(
                self,
                "Connection to %s timed out. (connect timeout=%s)"
                % (self.host, self.timeout),
            )
    
        except SocketError as e:
>           raise NewConnectionError(
                self, "Failed to establish a new connection: %s" % e
            )
E           urllib3.exceptions.NewConnectionError: <urllib3.connection.HTTPSConnection object at 0x7f754a3a9910>: Failed to establish a new connection: [Errno 110] Connection timed out

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connection.py:181: NewConnectionError

During handling of the above exception, another exception occurred:

self = <requests.adapters.HTTPAdapter object at 0x7f754a3f5340>
request = <PreparedRequest [POST]>, stream = False
timeout = Timeout(connect=None, read=None, total=None), verify = True
cert = None, proxies = OrderedDict()

    def send(self, request, stream=False, timeout=None, verify=True, cert=None, proxies=None):
        """Sends PreparedRequest object. Returns Response object.
    
        :param request: The :class:`PreparedRequest <PreparedRequest>` being sent.
        :param stream: (optional) Whether to stream the request content.
        :param timeout: (optional) How long to wait for the server to send
            data before giving up, as a float, or a :ref:`(connect timeout,
            read timeout) <timeouts>` tuple.
        :type timeout: float or tuple or urllib3 Timeout object
        :param verify: (optional) Either a boolean, in which case it controls whether
            we verify the server's TLS certificate, or a string, in which case it
            must be a path to a CA bundle to use
        :param cert: (optional) Any user-provided SSL certificate to be trusted.
        :param proxies: (optional) The proxies dictionary to apply to the request.
        :rtype: requests.Response
        """
    
        try:
            conn = self.get_connection(request.url, proxies)
        except LocationValueError as e:
            raise InvalidURL(e, request=request)
    
        self.cert_verify(conn, request.url, verify, cert)
        url = self.request_url(request, proxies)
        self.add_headers(request, stream=stream, timeout=timeout, verify=verify, cert=cert, proxies=proxies)
    
        chunked = not (request.body is None or 'Content-Length' in request.headers)
    
        if isinstance(timeout, tuple):
            try:
                connect, read = timeout
                timeout = TimeoutSauce(connect=connect, read=read)
            except ValueError as e:
                # this may raise a string formatting error.
                err = ("Invalid timeout {}. Pass a (connect, read) "
                       "timeout tuple, or a single float to set "
                       "both timeouts to the same value".format(timeout))
                raise ValueError(err)
        elif isinstance(timeout, TimeoutSauce):
            pass
        else:
            timeout = TimeoutSauce(connect=timeout, read=timeout)
    
        try:
            if not chunked:
>               resp = conn.urlopen(
                    method=request.method,
                    url=url,
                    body=request.body,
                    headers=request.headers,
                    redirect=False,
                    assert_same_host=False,
                    preload_content=False,
                    decode_content=False,
                    retries=self.max_retries,
                    timeout=timeout
                )

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/adapters.py:439: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754a3f5850>
method = 'POST'
url = '/api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf'
body = b'{"query": {"term": {"pennsieve.identifier.aggregate": "212"}}}'
headers = {'User-Agent': 'python-requests/2.25.1', 'Accept-Encoding': 'gzip, deflate', 'Accept': '*/*', 'Connection': 'keep-alive', 'Content-Length': '62', 'Content-Type': 'application/json'}
retries = Retry(total=0, connect=None, read=False, redirect=None, status=None)
redirect = False, assert_same_host = False
timeout = Timeout(connect=None, read=None, total=None), pool_timeout = None
release_conn = False, chunked = False, body_pos = None
response_kw = {'decode_content': False, 'preload_content': False}
parsed_url = Url(scheme=None, auth=None, host=None, port=None, path='/api/1/elastic/SPARC_PortalDatasets_dev/_search', query='api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf', fragment=None)
destination_scheme = None, conn = None, release_this_conn = True
http_tunnel_required = False, err = None, clean_exit = False

    def urlopen(
        self,
        method,
        url,
        body=None,
        headers=None,
        retries=None,
        redirect=True,
        assert_same_host=True,
        timeout=_Default,
        pool_timeout=None,
        release_conn=None,
        chunked=False,
        body_pos=None,
        **response_kw
    ):
        """
        Get a connection from the pool and perform an HTTP request. This is the
        lowest level call for making a request, so you'll need to specify all
        the raw details.
    
        .. note::
    
           More commonly, it's appropriate to use a convenience method provided
           by :class:`.RequestMethods`, such as :meth:`request`.
    
        .. note::
    
           `release_conn` will only behave as expected if
           `preload_content=False` because we want to make
           `preload_content=False` the default behaviour someday soon without
           breaking backwards compatibility.
    
        :param method:
            HTTP request method (such as GET, POST, PUT, etc.)
    
        :param url:
            The URL to perform the request on.
    
        :param body:
            Data to send in the request body, either :class:`str`, :class:`bytes`,
            an iterable of :class:`str`/:class:`bytes`, or a file-like object.
    
        :param headers:
            Dictionary of custom headers to send, such as User-Agent,
            If-None-Match, etc. If None, pool headers are used. If provided,
            these headers completely replace any pool-specific headers.
    
        :param retries:
            Configure the number of retries to allow before raising a
            :class:`~urllib3.exceptions.MaxRetryError` exception.
    
            Pass ``None`` to retry until you receive a response. Pass a
            :class:`~urllib3.util.retry.Retry` object for fine-grained control
            over different types of retries.
            Pass an integer number to retry connection errors that many times,
            but no other types of errors. Pass zero to never retry.
    
            If ``False``, then retries are disabled and any exception is raised
            immediately. Also, instead of raising a MaxRetryError on redirects,
            the redirect response will be returned.
    
        :type retries: :class:`~urllib3.util.retry.Retry`, False, or an int.
    
        :param redirect:
            If True, automatically handle redirects (status codes 301, 302,
            303, 307, 308). Each redirect counts as a retry. Disabling retries
            will disable redirect, too.
    
        :param assert_same_host:
            If ``True``, will make sure that the host of the pool requests is
            consistent else will raise HostChangedError. When ``False``, you can
            use the pool on an HTTP proxy and request foreign hosts.
    
        :param timeout:
            If specified, overrides the default timeout for this one
            request. It may be a float (in seconds) or an instance of
            :class:`urllib3.util.Timeout`.
    
        :param pool_timeout:
            If set and the pool is set to block=True, then this method will
            block for ``pool_timeout`` seconds and raise EmptyPoolError if no
            connection is available within the time period.
    
        :param release_conn:
            If False, then the urlopen call will not release the connection
            back into the pool once a response is received (but will release if
            you read the entire contents of the response such as when
            `preload_content=True`). This is useful if you're not preloading
            the response's content immediately. You will need to call
            ``r.release_conn()`` on the response ``r`` to return the connection
            back into the pool. If None, it takes the value of
            ``response_kw.get('preload_content', True)``.
    
        :param chunked:
            If True, urllib3 will send the body using chunked transfer
            encoding. Otherwise, urllib3 will send the body using the standard
            content-length form. Defaults to False.
    
        :param int body_pos:
            Position to seek to in file-like body in the event of a retry or
            redirect. Typically this won't need to be set because urllib3 will
            auto-populate the value when needed.
    
        :param \\**response_kw:
            Additional parameters are passed to
            :meth:`urllib3.response.HTTPResponse.from_httplib`
        """
    
        parsed_url = parse_url(url)
        destination_scheme = parsed_url.scheme
    
        if headers is None:
            headers = self.headers
    
        if not isinstance(retries, Retry):
            retries = Retry.from_int(retries, redirect=redirect, default=self.retries)
    
        if release_conn is None:
            release_conn = response_kw.get("preload_content", True)
    
        # Check host
        if assert_same_host and not self.is_same_host(url):
            raise HostChangedError(self, url, retries)
    
        # Ensure that the URL we're connecting to is properly encoded
        if url.startswith("/"):
            url = six.ensure_str(_encode_target(url))
        else:
            url = six.ensure_str(parsed_url.url)
    
        conn = None
    
        # Track whether `conn` needs to be released before
        # returning/raising/recursing. Update this variable if necessary, and
        # leave `release_conn` constant throughout the function. That way, if
        # the function recurses, the original value of `release_conn` will be
        # passed down into the recursive call, and its value will be respected.
        #
        # See issue #651 [1] for details.
        #
        # [1] <https://github.com/urllib3/urllib3/issues/651>
        release_this_conn = release_conn
    
        http_tunnel_required = connection_requires_http_tunnel(
            self.proxy, self.proxy_config, destination_scheme
        )
    
        # Merge the proxy headers. Only done when not using HTTP CONNECT. We
        # have to copy the headers dict so we can safely change it without those
        # changes being reflected in anyone else's copy.
        if not http_tunnel_required:
            headers = headers.copy()
            headers.update(self.proxy_headers)
    
        # Must keep the exception bound to a separate variable or else Python 3
        # complains about UnboundLocalError.
        err = None
    
        # Keep track of whether we cleanly exited the except block. This
        # ensures we do proper cleanup in finally.
        clean_exit = False
    
        # Rewind body position, if needed. Record current position
        # for future rewinds in the event of a redirect/retry.
        body_pos = set_file_position(body, body_pos)
    
        try:
            # Request a connection from the queue.
            timeout_obj = self._get_timeout(timeout)
            conn = self._get_conn(timeout=pool_timeout)
    
            conn.timeout = timeout_obj.connect_timeout
    
            is_new_proxy_conn = self.proxy is not None and not getattr(
                conn, "sock", None
            )
            if is_new_proxy_conn and http_tunnel_required:
                self._prepare_proxy(conn)
    
            # Make the request on the httplib connection object.
            httplib_response = self._make_request(
                conn,
                method,
                url,
                timeout=timeout_obj,
                body=body,
                headers=headers,
                chunked=chunked,
            )
    
            # If we're going to release the connection in ``finally:``, then
            # the response doesn't need to know about the connection. Otherwise
            # it will also try to release it and we'll have a double-release
            # mess.
            response_conn = conn if not release_conn else None
    
            # Pass method to Response for length checking
            response_kw["request_method"] = method
    
            # Import httplib's response into our own wrapper object
            response = self.ResponseCls.from_httplib(
                httplib_response,
                pool=self,
                connection=response_conn,
                retries=retries,
                **response_kw
            )
    
            # Everything went great!
            clean_exit = True
    
        except EmptyPoolError:
            # Didn't get a connection from the pool, no need to clean up
            clean_exit = True
            release_this_conn = False
            raise
    
        except (
            TimeoutError,
            HTTPException,
            SocketError,
            ProtocolError,
            BaseSSLError,
            SSLError,
            CertificateError,
        ) as e:
            # Discard the connection for these exceptions. It will be
            # replaced during the next _get_conn() call.
            clean_exit = False
            if isinstance(e, (BaseSSLError, CertificateError)):
                e = SSLError(e)
            elif isinstance(e, (SocketError, NewConnectionError)) and self.proxy:
                e = ProxyError("Cannot connect to proxy.", e)
            elif isinstance(e, (SocketError, HTTPException)):
                e = ProtocolError("Connection aborted.", e)
    
>           retries = retries.increment(
                method, url, error=e, _pool=self, _stacktrace=sys.exc_info()[2]
            )

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py:755: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = Retry(total=0, connect=None, read=False, redirect=None, status=None)
method = 'POST'
url = '/api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf'
response = None
error = NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7f754a3a9910>: Failed to establish a new connection: [Errno 110] Connection timed out')
_pool = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754a3f5850>
_stacktrace = <traceback object at 0x7f754a3b0140>

    def increment(
        self,
        method=None,
        url=None,
        response=None,
        error=None,
        _pool=None,
        _stacktrace=None,
    ):
        """Return a new Retry object with incremented retry counters.
    
        :param response: A response object, or None, if the server did not
            return a response.
        :type response: :class:`~urllib3.response.HTTPResponse`
        :param Exception error: An error encountered during the request, or
            None if the response was received successfully.
    
        :return: A new ``Retry`` object.
        """
        if self.total is False and error:
            # Disabled, indicate to re-raise the error.
            raise six.reraise(type(error), error, _stacktrace)
    
        total = self.total
        if total is not None:
            total -= 1
    
        connect = self.connect
        read = self.read
        redirect = self.redirect
        status_count = self.status
        other = self.other
        cause = "unknown"
        status = None
        redirect_location = None
    
        if error and self._is_connection_error(error):
            # Connect retry?
            if connect is False:
                raise six.reraise(type(error), error, _stacktrace)
            elif connect is not None:
                connect -= 1
    
        elif error and self._is_read_error(error):
            # Read retry?
            if read is False or not self._is_method_retryable(method):
                raise six.reraise(type(error), error, _stacktrace)
            elif read is not None:
                read -= 1
    
        elif error:
            # Other retry?
            if other is not None:
                other -= 1
    
        elif response and response.get_redirect_location():
            # Redirect retry?
            if redirect is not None:
                redirect -= 1
            cause = "too many redirects"
            redirect_location = response.get_redirect_location()
            status = response.status
    
        else:
            # Incrementing because of a server error like a 500 in
            # status_forcelist and the given method is in the allowed_methods
            cause = ResponseError.GENERIC_ERROR
            if response and response.status:
                if status_count is not None:
                    status_count -= 1
                cause = ResponseError.SPECIFIC_ERROR.format(status_code=response.status)
                status = response.status
    
        history = self.history + (
            RequestHistory(method, url, error, status, redirect_location),
        )
    
        new_retry = self.new(
            total=total,
            connect=connect,
            read=read,
            redirect=redirect,
            status=status_count,
            other=other,
            history=history,
        )
    
        if new_retry.is_exhausted():
>           raise MaxRetryError(_pool, url, error or ResponseError(cause))
E           urllib3.exceptions.MaxRetryError: HTTPSConnectionPool(host='scicrunch.org', port=443): Max retries exceeded with url: /api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7f754a3a9910>: Failed to establish a new connection: [Errno 110] Connection timed out'))

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/util/retry.py:574: MaxRetryError

During handling of the above exception, another exception occurred:

client = <FlaskClient <Flask 'app.main'>>

    def test_response_abi_plot(client):
        # Testing abi-plot with dataset 212
        identifier = "212"
        doi = "10.26275/lok5-wje6"
>       run_doi_test = check_doi_status(client, identifier, doi)

tests/test_scicrunch.py:221: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
tests/test_scicrunch.py:53: in check_doi_status
    r = client.get('/dataset_info/using_pennsieve_identifier', query_string={'identifier': dataset_id})
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/werkzeug/test.py:1029: in get
    return self.open(*args, **kw)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/testing.py:222: in open
    return Client.open(
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/werkzeug/test.py:993: in open
    response = self.run_wsgi_app(environ.copy(), buffered=buffered)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/werkzeug/test.py:884: in run_wsgi_app
    rv = run_wsgi_app(self.application, environ, buffered=buffered)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/werkzeug/test.py:1119: in run_wsgi_app
    app_rv = app(environ, start_response)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:2463: in __call__
    return self.wsgi_app(environ, start_response)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:2449: in wsgi_app
    response = self.handle_exception(e)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask_cors/extension.py:161: in wrapped_function
    return cors_after_request(app.make_response(f(*args, **kwargs)))
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1866: in handle_exception
    reraise(exc_type, exc_value, tb)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/_compat.py:39: in reraise
    raise value
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:2446: in wsgi_app
    response = self.full_dispatch_request()
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1951: in full_dispatch_request
    rv = self.handle_user_exception(e)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask_cors/extension.py:161: in wrapped_function
    return cors_after_request(app.make_response(f(*args, **kwargs)))
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1820: in handle_user_exception
    reraise(exc_type, exc_value, tb)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/_compat.py:39: in reraise
    raise value
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1949: in full_dispatch_request
    rv = self.dispatch_request()
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1935: in dispatch_request
    return self.view_functions[rule.endpoint](**req.view_args)
app/main.py:602: in get_dataset_info_pennsieve_identifier
    return reform_dataset_results(dataset_search(query))
app/main.py:663: in dataset_search
    response = requests.post(f'{Config.SCI_CRUNCH_HOST}/_search',
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/api.py:119: in post
    return request('post', url, data=data, json=json, **kwargs)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/api.py:61: in request
    return session.request(method=method, url=url, **kwargs)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/sessions.py:542: in request
    resp = self.send(prep, **send_kwargs)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/sessions.py:655: in send
    r = adapter.send(request, **kwargs)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <requests.adapters.HTTPAdapter object at 0x7f754a3f5340>
request = <PreparedRequest [POST]>, stream = False
timeout = Timeout(connect=None, read=None, total=None), verify = True
cert = None, proxies = OrderedDict()

    def send(self, request, stream=False, timeout=None, verify=True, cert=None, proxies=None):
        """Sends PreparedRequest object. Returns Response object.
    
        :param request: The :class:`PreparedRequest <PreparedRequest>` being sent.
        :param stream: (optional) Whether to stream the request content.
        :param timeout: (optional) How long to wait for the server to send
            data before giving up, as a float, or a :ref:`(connect timeout,
            read timeout) <timeouts>` tuple.
        :type timeout: float or tuple or urllib3 Timeout object
        :param verify: (optional) Either a boolean, in which case it controls whether
            we verify the server's TLS certificate, or a string, in which case it
            must be a path to a CA bundle to use
        :param cert: (optional) Any user-provided SSL certificate to be trusted.
        :param proxies: (optional) The proxies dictionary to apply to the request.
        :rtype: requests.Response
        """
    
        try:
            conn = self.get_connection(request.url, proxies)
        except LocationValueError as e:
            raise InvalidURL(e, request=request)
    
        self.cert_verify(conn, request.url, verify, cert)
        url = self.request_url(request, proxies)
        self.add_headers(request, stream=stream, timeout=timeout, verify=verify, cert=cert, proxies=proxies)
    
        chunked = not (request.body is None or 'Content-Length' in request.headers)
    
        if isinstance(timeout, tuple):
            try:
                connect, read = timeout
                timeout = TimeoutSauce(connect=connect, read=read)
            except ValueError as e:
                # this may raise a string formatting error.
                err = ("Invalid timeout {}. Pass a (connect, read) "
                       "timeout tuple, or a single float to set "
                       "both timeouts to the same value".format(timeout))
                raise ValueError(err)
        elif isinstance(timeout, TimeoutSauce):
            pass
        else:
            timeout = TimeoutSauce(connect=timeout, read=timeout)
    
        try:
            if not chunked:
                resp = conn.urlopen(
                    method=request.method,
                    url=url,
                    body=request.body,
                    headers=request.headers,
                    redirect=False,
                    assert_same_host=False,
                    preload_content=False,
                    decode_content=False,
                    retries=self.max_retries,
                    timeout=timeout
                )
    
            # Send the request.
            else:
                if hasattr(conn, 'proxy_pool'):
                    conn = conn.proxy_pool
    
                low_conn = conn._get_conn(timeout=DEFAULT_POOL_TIMEOUT)
    
                try:
                    low_conn.putrequest(request.method,
                                        url,
                                        skip_accept_encoding=True)
    
                    for header, value in request.headers.items():
                        low_conn.putheader(header, value)
    
                    low_conn.endheaders()
    
                    for i in request.body:
                        low_conn.send(hex(len(i))[2:].encode('utf-8'))
                        low_conn.send(b'\r\n')
                        low_conn.send(i)
                        low_conn.send(b'\r\n')
                    low_conn.send(b'0\r\n\r\n')
    
                    # Receive the response from the server
                    try:
                        # For Python 2.7, use buffering of HTTP responses
                        r = low_conn.getresponse(buffering=True)
                    except TypeError:
                        # For compatibility with Python 3.3+
                        r = low_conn.getresponse()
    
                    resp = HTTPResponse.from_httplib(
                        r,
                        pool=conn,
                        connection=low_conn,
                        preload_content=False,
                        decode_content=False
                    )
                except:
                    # If we hit any problems here, clean up the connection.
                    # Then, reraise so that we can handle the actual exception.
                    low_conn.close()
                    raise
    
        except (ProtocolError, socket.error) as err:
            raise ConnectionError(err, request=request)
    
        except MaxRetryError as e:
            if isinstance(e.reason, ConnectTimeoutError):
                # TODO: Remove this in 3.0.0: see #2811
                if not isinstance(e.reason, NewConnectionError):
                    raise ConnectTimeout(e, request=request)
    
            if isinstance(e.reason, ResponseError):
                raise RetryError(e, request=request)
    
            if isinstance(e.reason, _ProxyError):
                raise ProxyError(e, request=request)
    
            if isinstance(e.reason, _SSLError):
                # This branch is for urllib3 v1.22 and later.
                raise SSLError(e, request=request)
    
>           raise ConnectionError(e, request=request)
E           requests.exceptions.ConnectionError: HTTPSConnectionPool(host='scicrunch.org', port=443): Max retries exceeded with url: /api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7f754a3a9910>: Failed to establish a new connection: [Errno 110] Connection timed out'))

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/adapters.py:516: ConnectionError
__________________________ test_response_abi_scaffold __________________________

self = <urllib3.connection.HTTPSConnection object at 0x7f754ab42a90>

    def _new_conn(self):
        """Establish a socket connection and set nodelay settings on it.
    
        :return: New socket connection.
        """
        extra_kw = {}
        if self.source_address:
            extra_kw["source_address"] = self.source_address
    
        if self.socket_options:
            extra_kw["socket_options"] = self.socket_options
    
        try:
>           conn = connection.create_connection(
                (self._dns_host, self.port), self.timeout, **extra_kw
            )

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connection.py:169: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

address = ('scicrunch.org', 443), timeout = None, source_address = None
socket_options = [(6, 1, 1)]

    def create_connection(
        address,
        timeout=socket._GLOBAL_DEFAULT_TIMEOUT,
        source_address=None,
        socket_options=None,
    ):
        """Connect to *address* and return the socket object.
    
        Convenience function.  Connect to *address* (a 2-tuple ``(host,
        port)``) and return the socket object.  Passing the optional
        *timeout* parameter will set the timeout on the socket instance
        before attempting to connect.  If no *timeout* is supplied, the
        global default timeout setting returned by :func:`socket.getdefaulttimeout`
        is used.  If *source_address* is set it must be a tuple of (host, port)
        for the socket to bind as a source address before making the connection.
        An host of '' or port 0 tells the OS to use the default.
        """
    
        host, port = address
        if host.startswith("["):
            host = host.strip("[]")
        err = None
    
        # Using the value from allowed_gai_family() in the context of getaddrinfo lets
        # us select whether to work with IPv4 DNS records, IPv6 records, or both.
        # The original create_connection function always returns all records.
        family = allowed_gai_family()
    
        try:
            host.encode("idna")
        except UnicodeError:
            return six.raise_from(
                LocationParseError(u"'%s', label empty or too long" % host), None
            )
    
        for res in socket.getaddrinfo(host, port, family, socket.SOCK_STREAM):
            af, socktype, proto, canonname, sa = res
            sock = None
            try:
                sock = socket.socket(af, socktype, proto)
    
                # If provided, set socket level options before connecting.
                _set_socket_options(sock, socket_options)
    
                if timeout is not socket._GLOBAL_DEFAULT_TIMEOUT:
                    sock.settimeout(timeout)
                if source_address:
                    sock.bind(source_address)
                sock.connect(sa)
                return sock
    
            except socket.error as e:
                err = e
                if sock is not None:
                    sock.close()
                    sock = None
    
        if err is not None:
>           raise err

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/util/connection.py:96: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

address = ('scicrunch.org', 443), timeout = None, source_address = None
socket_options = [(6, 1, 1)]

    def create_connection(
        address,
        timeout=socket._GLOBAL_DEFAULT_TIMEOUT,
        source_address=None,
        socket_options=None,
    ):
        """Connect to *address* and return the socket object.
    
        Convenience function.  Connect to *address* (a 2-tuple ``(host,
        port)``) and return the socket object.  Passing the optional
        *timeout* parameter will set the timeout on the socket instance
        before attempting to connect.  If no *timeout* is supplied, the
        global default timeout setting returned by :func:`socket.getdefaulttimeout`
        is used.  If *source_address* is set it must be a tuple of (host, port)
        for the socket to bind as a source address before making the connection.
        An host of '' or port 0 tells the OS to use the default.
        """
    
        host, port = address
        if host.startswith("["):
            host = host.strip("[]")
        err = None
    
        # Using the value from allowed_gai_family() in the context of getaddrinfo lets
        # us select whether to work with IPv4 DNS records, IPv6 records, or both.
        # The original create_connection function always returns all records.
        family = allowed_gai_family()
    
        try:
            host.encode("idna")
        except UnicodeError:
            return six.raise_from(
                LocationParseError(u"'%s', label empty or too long" % host), None
            )
    
        for res in socket.getaddrinfo(host, port, family, socket.SOCK_STREAM):
            af, socktype, proto, canonname, sa = res
            sock = None
            try:
                sock = socket.socket(af, socktype, proto)
    
                # If provided, set socket level options before connecting.
                _set_socket_options(sock, socket_options)
    
                if timeout is not socket._GLOBAL_DEFAULT_TIMEOUT:
                    sock.settimeout(timeout)
                if source_address:
                    sock.bind(source_address)
>               sock.connect(sa)
E               TimeoutError: [Errno 110] Connection timed out

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/util/connection.py:86: TimeoutError

During handling of the above exception, another exception occurred:

self = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754ab42d90>
method = 'POST'
url = '/api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf'
body = b'{"query": {"term": {"pennsieve.identifier.aggregate": "76"}}}'
headers = {'User-Agent': 'python-requests/2.25.1', 'Accept-Encoding': 'gzip, deflate', 'Accept': '*/*', 'Connection': 'keep-alive', 'Content-Length': '61', 'Content-Type': 'application/json'}
retries = Retry(total=0, connect=None, read=False, redirect=None, status=None)
redirect = False, assert_same_host = False
timeout = Timeout(connect=None, read=None, total=None), pool_timeout = None
release_conn = False, chunked = False, body_pos = None
response_kw = {'decode_content': False, 'preload_content': False}
parsed_url = Url(scheme=None, auth=None, host=None, port=None, path='/api/1/elastic/SPARC_PortalDatasets_dev/_search', query='api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf', fragment=None)
destination_scheme = None, conn = None, release_this_conn = True
http_tunnel_required = False, err = None, clean_exit = False

    def urlopen(
        self,
        method,
        url,
        body=None,
        headers=None,
        retries=None,
        redirect=True,
        assert_same_host=True,
        timeout=_Default,
        pool_timeout=None,
        release_conn=None,
        chunked=False,
        body_pos=None,
        **response_kw
    ):
        """
        Get a connection from the pool and perform an HTTP request. This is the
        lowest level call for making a request, so you'll need to specify all
        the raw details.
    
        .. note::
    
           More commonly, it's appropriate to use a convenience method provided
           by :class:`.RequestMethods`, such as :meth:`request`.
    
        .. note::
    
           `release_conn` will only behave as expected if
           `preload_content=False` because we want to make
           `preload_content=False` the default behaviour someday soon without
           breaking backwards compatibility.
    
        :param method:
            HTTP request method (such as GET, POST, PUT, etc.)
    
        :param url:
            The URL to perform the request on.
    
        :param body:
            Data to send in the request body, either :class:`str`, :class:`bytes`,
            an iterable of :class:`str`/:class:`bytes`, or a file-like object.
    
        :param headers:
            Dictionary of custom headers to send, such as User-Agent,
            If-None-Match, etc. If None, pool headers are used. If provided,
            these headers completely replace any pool-specific headers.
    
        :param retries:
            Configure the number of retries to allow before raising a
            :class:`~urllib3.exceptions.MaxRetryError` exception.
    
            Pass ``None`` to retry until you receive a response. Pass a
            :class:`~urllib3.util.retry.Retry` object for fine-grained control
            over different types of retries.
            Pass an integer number to retry connection errors that many times,
            but no other types of errors. Pass zero to never retry.
    
            If ``False``, then retries are disabled and any exception is raised
            immediately. Also, instead of raising a MaxRetryError on redirects,
            the redirect response will be returned.
    
        :type retries: :class:`~urllib3.util.retry.Retry`, False, or an int.
    
        :param redirect:
            If True, automatically handle redirects (status codes 301, 302,
            303, 307, 308). Each redirect counts as a retry. Disabling retries
            will disable redirect, too.
    
        :param assert_same_host:
            If ``True``, will make sure that the host of the pool requests is
            consistent else will raise HostChangedError. When ``False``, you can
            use the pool on an HTTP proxy and request foreign hosts.
    
        :param timeout:
            If specified, overrides the default timeout for this one
            request. It may be a float (in seconds) or an instance of
            :class:`urllib3.util.Timeout`.
    
        :param pool_timeout:
            If set and the pool is set to block=True, then this method will
            block for ``pool_timeout`` seconds and raise EmptyPoolError if no
            connection is available within the time period.
    
        :param release_conn:
            If False, then the urlopen call will not release the connection
            back into the pool once a response is received (but will release if
            you read the entire contents of the response such as when
            `preload_content=True`). This is useful if you're not preloading
            the response's content immediately. You will need to call
            ``r.release_conn()`` on the response ``r`` to return the connection
            back into the pool. If None, it takes the value of
            ``response_kw.get('preload_content', True)``.
    
        :param chunked:
            If True, urllib3 will send the body using chunked transfer
            encoding. Otherwise, urllib3 will send the body using the standard
            content-length form. Defaults to False.
    
        :param int body_pos:
            Position to seek to in file-like body in the event of a retry or
            redirect. Typically this won't need to be set because urllib3 will
            auto-populate the value when needed.
    
        :param \\**response_kw:
            Additional parameters are passed to
            :meth:`urllib3.response.HTTPResponse.from_httplib`
        """
    
        parsed_url = parse_url(url)
        destination_scheme = parsed_url.scheme
    
        if headers is None:
            headers = self.headers
    
        if not isinstance(retries, Retry):
            retries = Retry.from_int(retries, redirect=redirect, default=self.retries)
    
        if release_conn is None:
            release_conn = response_kw.get("preload_content", True)
    
        # Check host
        if assert_same_host and not self.is_same_host(url):
            raise HostChangedError(self, url, retries)
    
        # Ensure that the URL we're connecting to is properly encoded
        if url.startswith("/"):
            url = six.ensure_str(_encode_target(url))
        else:
            url = six.ensure_str(parsed_url.url)
    
        conn = None
    
        # Track whether `conn` needs to be released before
        # returning/raising/recursing. Update this variable if necessary, and
        # leave `release_conn` constant throughout the function. That way, if
        # the function recurses, the original value of `release_conn` will be
        # passed down into the recursive call, and its value will be respected.
        #
        # See issue #651 [1] for details.
        #
        # [1] <https://github.com/urllib3/urllib3/issues/651>
        release_this_conn = release_conn
    
        http_tunnel_required = connection_requires_http_tunnel(
            self.proxy, self.proxy_config, destination_scheme
        )
    
        # Merge the proxy headers. Only done when not using HTTP CONNECT. We
        # have to copy the headers dict so we can safely change it without those
        # changes being reflected in anyone else's copy.
        if not http_tunnel_required:
            headers = headers.copy()
            headers.update(self.proxy_headers)
    
        # Must keep the exception bound to a separate variable or else Python 3
        # complains about UnboundLocalError.
        err = None
    
        # Keep track of whether we cleanly exited the except block. This
        # ensures we do proper cleanup in finally.
        clean_exit = False
    
        # Rewind body position, if needed. Record current position
        # for future rewinds in the event of a redirect/retry.
        body_pos = set_file_position(body, body_pos)
    
        try:
            # Request a connection from the queue.
            timeout_obj = self._get_timeout(timeout)
            conn = self._get_conn(timeout=pool_timeout)
    
            conn.timeout = timeout_obj.connect_timeout
    
            is_new_proxy_conn = self.proxy is not None and not getattr(
                conn, "sock", None
            )
            if is_new_proxy_conn and http_tunnel_required:
                self._prepare_proxy(conn)
    
            # Make the request on the httplib connection object.
>           httplib_response = self._make_request(
                conn,
                method,
                url,
                timeout=timeout_obj,
                body=body,
                headers=headers,
                chunked=chunked,
            )

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py:699: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754ab42d90>
conn = <urllib3.connection.HTTPSConnection object at 0x7f754ab42a90>
method = 'POST'
url = '/api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf'
timeout = Timeout(connect=None, read=None, total=None), chunked = False
httplib_request_kw = {'body': b'{"query": {"term": {"pennsieve.identifier.aggregate": "76"}}}', 'headers': {'User-Agent': 'python-requests/...ip, deflate', 'Accept': '*/*', 'Connection': 'keep-alive', 'Content-Length': '61', 'Content-Type': 'application/json'}}
timeout_obj = Timeout(connect=None, read=None, total=None)

    def _make_request(
        self, conn, method, url, timeout=_Default, chunked=False, **httplib_request_kw
    ):
        """
        Perform a request on a given urllib connection object taken from our
        pool.
    
        :param conn:
            a connection from one of our connection pools
    
        :param timeout:
            Socket timeout in seconds for the request. This can be a
            float or integer, which will set the same timeout value for
            the socket connect and the socket read, or an instance of
            :class:`urllib3.util.Timeout`, which gives you more fine-grained
            control over your timeouts.
        """
        self.num_requests += 1
    
        timeout_obj = self._get_timeout(timeout)
        timeout_obj.start_connect()
        conn.timeout = timeout_obj.connect_timeout
    
        # Trigger any extra validation we need to do.
        try:
>           self._validate_conn(conn)

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py:382: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754ab42d90>
conn = <urllib3.connection.HTTPSConnection object at 0x7f754ab42a90>

    def _validate_conn(self, conn):
        """
        Called right before a request is made, after the socket is created.
        """
        super(HTTPSConnectionPool, self)._validate_conn(conn)
    
        # Force connect early to allow us to validate the connection.
        if not getattr(conn, "sock", None):  # AppEngine might not have  `.sock`
>           conn.connect()

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py:1010: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connection.HTTPSConnection object at 0x7f754ab42a90>

    def connect(self):
        # Add certificate verification
>       conn = self._new_conn()

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connection.py:353: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connection.HTTPSConnection object at 0x7f754ab42a90>

    def _new_conn(self):
        """Establish a socket connection and set nodelay settings on it.
    
        :return: New socket connection.
        """
        extra_kw = {}
        if self.source_address:
            extra_kw["source_address"] = self.source_address
    
        if self.socket_options:
            extra_kw["socket_options"] = self.socket_options
    
        try:
            conn = connection.create_connection(
                (self._dns_host, self.port), self.timeout, **extra_kw
            )
    
        except SocketTimeout:
            raise ConnectTimeoutError(
                self,
                "Connection to %s timed out. (connect timeout=%s)"
                % (self.host, self.timeout),
            )
    
        except SocketError as e:
>           raise NewConnectionError(
                self, "Failed to establish a new connection: %s" % e
            )
E           urllib3.exceptions.NewConnectionError: <urllib3.connection.HTTPSConnection object at 0x7f754ab42a90>: Failed to establish a new connection: [Errno 110] Connection timed out

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connection.py:181: NewConnectionError

During handling of the above exception, another exception occurred:

self = <requests.adapters.HTTPAdapter object at 0x7f754ab42820>
request = <PreparedRequest [POST]>, stream = False
timeout = Timeout(connect=None, read=None, total=None), verify = True
cert = None, proxies = OrderedDict()

    def send(self, request, stream=False, timeout=None, verify=True, cert=None, proxies=None):
        """Sends PreparedRequest object. Returns Response object.
    
        :param request: The :class:`PreparedRequest <PreparedRequest>` being sent.
        :param stream: (optional) Whether to stream the request content.
        :param timeout: (optional) How long to wait for the server to send
            data before giving up, as a float, or a :ref:`(connect timeout,
            read timeout) <timeouts>` tuple.
        :type timeout: float or tuple or urllib3 Timeout object
        :param verify: (optional) Either a boolean, in which case it controls whether
            we verify the server's TLS certificate, or a string, in which case it
            must be a path to a CA bundle to use
        :param cert: (optional) Any user-provided SSL certificate to be trusted.
        :param proxies: (optional) The proxies dictionary to apply to the request.
        :rtype: requests.Response
        """
    
        try:
            conn = self.get_connection(request.url, proxies)
        except LocationValueError as e:
            raise InvalidURL(e, request=request)
    
        self.cert_verify(conn, request.url, verify, cert)
        url = self.request_url(request, proxies)
        self.add_headers(request, stream=stream, timeout=timeout, verify=verify, cert=cert, proxies=proxies)
    
        chunked = not (request.body is None or 'Content-Length' in request.headers)
    
        if isinstance(timeout, tuple):
            try:
                connect, read = timeout
                timeout = TimeoutSauce(connect=connect, read=read)
            except ValueError as e:
                # this may raise a string formatting error.
                err = ("Invalid timeout {}. Pass a (connect, read) "
                       "timeout tuple, or a single float to set "
                       "both timeouts to the same value".format(timeout))
                raise ValueError(err)
        elif isinstance(timeout, TimeoutSauce):
            pass
        else:
            timeout = TimeoutSauce(connect=timeout, read=timeout)
    
        try:
            if not chunked:
>               resp = conn.urlopen(
                    method=request.method,
                    url=url,
                    body=request.body,
                    headers=request.headers,
                    redirect=False,
                    assert_same_host=False,
                    preload_content=False,
                    decode_content=False,
                    retries=self.max_retries,
                    timeout=timeout
                )

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/adapters.py:439: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754ab42d90>
method = 'POST'
url = '/api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf'
body = b'{"query": {"term": {"pennsieve.identifier.aggregate": "76"}}}'
headers = {'User-Agent': 'python-requests/2.25.1', 'Accept-Encoding': 'gzip, deflate', 'Accept': '*/*', 'Connection': 'keep-alive', 'Content-Length': '61', 'Content-Type': 'application/json'}
retries = Retry(total=0, connect=None, read=False, redirect=None, status=None)
redirect = False, assert_same_host = False
timeout = Timeout(connect=None, read=None, total=None), pool_timeout = None
release_conn = False, chunked = False, body_pos = None
response_kw = {'decode_content': False, 'preload_content': False}
parsed_url = Url(scheme=None, auth=None, host=None, port=None, path='/api/1/elastic/SPARC_PortalDatasets_dev/_search', query='api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf', fragment=None)
destination_scheme = None, conn = None, release_this_conn = True
http_tunnel_required = False, err = None, clean_exit = False

    def urlopen(
        self,
        method,
        url,
        body=None,
        headers=None,
        retries=None,
        redirect=True,
        assert_same_host=True,
        timeout=_Default,
        pool_timeout=None,
        release_conn=None,
        chunked=False,
        body_pos=None,
        **response_kw
    ):
        """
        Get a connection from the pool and perform an HTTP request. This is the
        lowest level call for making a request, so you'll need to specify all
        the raw details.
    
        .. note::
    
           More commonly, it's appropriate to use a convenience method provided
           by :class:`.RequestMethods`, such as :meth:`request`.
    
        .. note::
    
           `release_conn` will only behave as expected if
           `preload_content=False` because we want to make
           `preload_content=False` the default behaviour someday soon without
           breaking backwards compatibility.
    
        :param method:
            HTTP request method (such as GET, POST, PUT, etc.)
    
        :param url:
            The URL to perform the request on.
    
        :param body:
            Data to send in the request body, either :class:`str`, :class:`bytes`,
            an iterable of :class:`str`/:class:`bytes`, or a file-like object.
    
        :param headers:
            Dictionary of custom headers to send, such as User-Agent,
            If-None-Match, etc. If None, pool headers are used. If provided,
            these headers completely replace any pool-specific headers.
    
        :param retries:
            Configure the number of retries to allow before raising a
            :class:`~urllib3.exceptions.MaxRetryError` exception.
    
            Pass ``None`` to retry until you receive a response. Pass a
            :class:`~urllib3.util.retry.Retry` object for fine-grained control
            over different types of retries.
            Pass an integer number to retry connection errors that many times,
            but no other types of errors. Pass zero to never retry.
    
            If ``False``, then retries are disabled and any exception is raised
            immediately. Also, instead of raising a MaxRetryError on redirects,
            the redirect response will be returned.
    
        :type retries: :class:`~urllib3.util.retry.Retry`, False, or an int.
    
        :param redirect:
            If True, automatically handle redirects (status codes 301, 302,
            303, 307, 308). Each redirect counts as a retry. Disabling retries
            will disable redirect, too.
    
        :param assert_same_host:
            If ``True``, will make sure that the host of the pool requests is
            consistent else will raise HostChangedError. When ``False``, you can
            use the pool on an HTTP proxy and request foreign hosts.
    
        :param timeout:
            If specified, overrides the default timeout for this one
            request. It may be a float (in seconds) or an instance of
            :class:`urllib3.util.Timeout`.
    
        :param pool_timeout:
            If set and the pool is set to block=True, then this method will
            block for ``pool_timeout`` seconds and raise EmptyPoolError if no
            connection is available within the time period.
    
        :param release_conn:
            If False, then the urlopen call will not release the connection
            back into the pool once a response is received (but will release if
            you read the entire contents of the response such as when
            `preload_content=True`). This is useful if you're not preloading
            the response's content immediately. You will need to call
            ``r.release_conn()`` on the response ``r`` to return the connection
            back into the pool. If None, it takes the value of
            ``response_kw.get('preload_content', True)``.
    
        :param chunked:
            If True, urllib3 will send the body using chunked transfer
            encoding. Otherwise, urllib3 will send the body using the standard
            content-length form. Defaults to False.
    
        :param int body_pos:
            Position to seek to in file-like body in the event of a retry or
            redirect. Typically this won't need to be set because urllib3 will
            auto-populate the value when needed.
    
        :param \\**response_kw:
            Additional parameters are passed to
            :meth:`urllib3.response.HTTPResponse.from_httplib`
        """
    
        parsed_url = parse_url(url)
        destination_scheme = parsed_url.scheme
    
        if headers is None:
            headers = self.headers
    
        if not isinstance(retries, Retry):
            retries = Retry.from_int(retries, redirect=redirect, default=self.retries)
    
        if release_conn is None:
            release_conn = response_kw.get("preload_content", True)
    
        # Check host
        if assert_same_host and not self.is_same_host(url):
            raise HostChangedError(self, url, retries)
    
        # Ensure that the URL we're connecting to is properly encoded
        if url.startswith("/"):
            url = six.ensure_str(_encode_target(url))
        else:
            url = six.ensure_str(parsed_url.url)
    
        conn = None
    
        # Track whether `conn` needs to be released before
        # returning/raising/recursing. Update this variable if necessary, and
        # leave `release_conn` constant throughout the function. That way, if
        # the function recurses, the original value of `release_conn` will be
        # passed down into the recursive call, and its value will be respected.
        #
        # See issue #651 [1] for details.
        #
        # [1] <https://github.com/urllib3/urllib3/issues/651>
        release_this_conn = release_conn
    
        http_tunnel_required = connection_requires_http_tunnel(
            self.proxy, self.proxy_config, destination_scheme
        )
    
        # Merge the proxy headers. Only done when not using HTTP CONNECT. We
        # have to copy the headers dict so we can safely change it without those
        # changes being reflected in anyone else's copy.
        if not http_tunnel_required:
            headers = headers.copy()
            headers.update(self.proxy_headers)
    
        # Must keep the exception bound to a separate variable or else Python 3
        # complains about UnboundLocalError.
        err = None
    
        # Keep track of whether we cleanly exited the except block. This
        # ensures we do proper cleanup in finally.
        clean_exit = False
    
        # Rewind body position, if needed. Record current position
        # for future rewinds in the event of a redirect/retry.
        body_pos = set_file_position(body, body_pos)
    
        try:
            # Request a connection from the queue.
            timeout_obj = self._get_timeout(timeout)
            conn = self._get_conn(timeout=pool_timeout)
    
            conn.timeout = timeout_obj.connect_timeout
    
            is_new_proxy_conn = self.proxy is not None and not getattr(
                conn, "sock", None
            )
            if is_new_proxy_conn and http_tunnel_required:
                self._prepare_proxy(conn)
    
            # Make the request on the httplib connection object.
            httplib_response = self._make_request(
                conn,
                method,
                url,
                timeout=timeout_obj,
                body=body,
                headers=headers,
                chunked=chunked,
            )
    
            # If we're going to release the connection in ``finally:``, then
            # the response doesn't need to know about the connection. Otherwise
            # it will also try to release it and we'll have a double-release
            # mess.
            response_conn = conn if not release_conn else None
    
            # Pass method to Response for length checking
            response_kw["request_method"] = method
    
            # Import httplib's response into our own wrapper object
            response = self.ResponseCls.from_httplib(
                httplib_response,
                pool=self,
                connection=response_conn,
                retries=retries,
                **response_kw
            )
    
            # Everything went great!
            clean_exit = True
    
        except EmptyPoolError:
            # Didn't get a connection from the pool, no need to clean up
            clean_exit = True
            release_this_conn = False
            raise
    
        except (
            TimeoutError,
            HTTPException,
            SocketError,
            ProtocolError,
            BaseSSLError,
            SSLError,
            CertificateError,
        ) as e:
            # Discard the connection for these exceptions. It will be
            # replaced during the next _get_conn() call.
            clean_exit = False
            if isinstance(e, (BaseSSLError, CertificateError)):
                e = SSLError(e)
            elif isinstance(e, (SocketError, NewConnectionError)) and self.proxy:
                e = ProxyError("Cannot connect to proxy.", e)
            elif isinstance(e, (SocketError, HTTPException)):
                e = ProtocolError("Connection aborted.", e)
    
>           retries = retries.increment(
                method, url, error=e, _pool=self, _stacktrace=sys.exc_info()[2]
            )

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py:755: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = Retry(total=0, connect=None, read=False, redirect=None, status=None)
method = 'POST'
url = '/api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf'
response = None
error = NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7f754ab42a90>: Failed to establish a new connection: [Errno 110] Connection timed out')
_pool = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754ab42d90>
_stacktrace = <traceback object at 0x7f754a34ae80>

    def increment(
        self,
        method=None,
        url=None,
        response=None,
        error=None,
        _pool=None,
        _stacktrace=None,
    ):
        """Return a new Retry object with incremented retry counters.
    
        :param response: A response object, or None, if the server did not
            return a response.
        :type response: :class:`~urllib3.response.HTTPResponse`
        :param Exception error: An error encountered during the request, or
            None if the response was received successfully.
    
        :return: A new ``Retry`` object.
        """
        if self.total is False and error:
            # Disabled, indicate to re-raise the error.
            raise six.reraise(type(error), error, _stacktrace)
    
        total = self.total
        if total is not None:
            total -= 1
    
        connect = self.connect
        read = self.read
        redirect = self.redirect
        status_count = self.status
        other = self.other
        cause = "unknown"
        status = None
        redirect_location = None
    
        if error and self._is_connection_error(error):
            # Connect retry?
            if connect is False:
                raise six.reraise(type(error), error, _stacktrace)
            elif connect is not None:
                connect -= 1
    
        elif error and self._is_read_error(error):
            # Read retry?
            if read is False or not self._is_method_retryable(method):
                raise six.reraise(type(error), error, _stacktrace)
            elif read is not None:
                read -= 1
    
        elif error:
            # Other retry?
            if other is not None:
                other -= 1
    
        elif response and response.get_redirect_location():
            # Redirect retry?
            if redirect is not None:
                redirect -= 1
            cause = "too many redirects"
            redirect_location = response.get_redirect_location()
            status = response.status
    
        else:
            # Incrementing because of a server error like a 500 in
            # status_forcelist and the given method is in the allowed_methods
            cause = ResponseError.GENERIC_ERROR
            if response and response.status:
                if status_count is not None:
                    status_count -= 1
                cause = ResponseError.SPECIFIC_ERROR.format(status_code=response.status)
                status = response.status
    
        history = self.history + (
            RequestHistory(method, url, error, status, redirect_location),
        )
    
        new_retry = self.new(
            total=total,
            connect=connect,
            read=read,
            redirect=redirect,
            status=status_count,
            other=other,
            history=history,
        )
    
        if new_retry.is_exhausted():
>           raise MaxRetryError(_pool, url, error or ResponseError(cause))
E           urllib3.exceptions.MaxRetryError: HTTPSConnectionPool(host='scicrunch.org', port=443): Max retries exceeded with url: /api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7f754ab42a90>: Failed to establish a new connection: [Errno 110] Connection timed out'))

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/util/retry.py:574: MaxRetryError

During handling of the above exception, another exception occurred:

client = <FlaskClient <Flask 'app.main'>>

    def test_response_abi_scaffold(client):
        # Testing abi-scaffold with dataset 76
        identifier = "76"
        doi = "10.26275/jarb-s8jw"
>       run_doi_test = check_doi_status(client, identifier, doi)

tests/test_scicrunch.py:255: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
tests/test_scicrunch.py:53: in check_doi_status
    r = client.get('/dataset_info/using_pennsieve_identifier', query_string={'identifier': dataset_id})
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/werkzeug/test.py:1029: in get
    return self.open(*args, **kw)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/testing.py:222: in open
    return Client.open(
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/werkzeug/test.py:993: in open
    response = self.run_wsgi_app(environ.copy(), buffered=buffered)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/werkzeug/test.py:884: in run_wsgi_app
    rv = run_wsgi_app(self.application, environ, buffered=buffered)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/werkzeug/test.py:1119: in run_wsgi_app
    app_rv = app(environ, start_response)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:2463: in __call__
    return self.wsgi_app(environ, start_response)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:2449: in wsgi_app
    response = self.handle_exception(e)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask_cors/extension.py:161: in wrapped_function
    return cors_after_request(app.make_response(f(*args, **kwargs)))
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1866: in handle_exception
    reraise(exc_type, exc_value, tb)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/_compat.py:39: in reraise
    raise value
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:2446: in wsgi_app
    response = self.full_dispatch_request()
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1951: in full_dispatch_request
    rv = self.handle_user_exception(e)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask_cors/extension.py:161: in wrapped_function
    return cors_after_request(app.make_response(f(*args, **kwargs)))
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1820: in handle_user_exception
    reraise(exc_type, exc_value, tb)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/_compat.py:39: in reraise
    raise value
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1949: in full_dispatch_request
    rv = self.dispatch_request()
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1935: in dispatch_request
    return self.view_functions[rule.endpoint](**req.view_args)
app/main.py:602: in get_dataset_info_pennsieve_identifier
    return reform_dataset_results(dataset_search(query))
app/main.py:663: in dataset_search
    response = requests.post(f'{Config.SCI_CRUNCH_HOST}/_search',
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/api.py:119: in post
    return request('post', url, data=data, json=json, **kwargs)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/api.py:61: in request
    return session.request(method=method, url=url, **kwargs)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/sessions.py:542: in request
    resp = self.send(prep, **send_kwargs)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/sessions.py:655: in send
    r = adapter.send(request, **kwargs)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <requests.adapters.HTTPAdapter object at 0x7f754ab42820>
request = <PreparedRequest [POST]>, stream = False
timeout = Timeout(connect=None, read=None, total=None), verify = True
cert = None, proxies = OrderedDict()

    def send(self, request, stream=False, timeout=None, verify=True, cert=None, proxies=None):
        """Sends PreparedRequest object. Returns Response object.
    
        :param request: The :class:`PreparedRequest <PreparedRequest>` being sent.
        :param stream: (optional) Whether to stream the request content.
        :param timeout: (optional) How long to wait for the server to send
            data before giving up, as a float, or a :ref:`(connect timeout,
            read timeout) <timeouts>` tuple.
        :type timeout: float or tuple or urllib3 Timeout object
        :param verify: (optional) Either a boolean, in which case it controls whether
            we verify the server's TLS certificate, or a string, in which case it
            must be a path to a CA bundle to use
        :param cert: (optional) Any user-provided SSL certificate to be trusted.
        :param proxies: (optional) The proxies dictionary to apply to the request.
        :rtype: requests.Response
        """
    
        try:
            conn = self.get_connection(request.url, proxies)
        except LocationValueError as e:
            raise InvalidURL(e, request=request)
    
        self.cert_verify(conn, request.url, verify, cert)
        url = self.request_url(request, proxies)
        self.add_headers(request, stream=stream, timeout=timeout, verify=verify, cert=cert, proxies=proxies)
    
        chunked = not (request.body is None or 'Content-Length' in request.headers)
    
        if isinstance(timeout, tuple):
            try:
                connect, read = timeout
                timeout = TimeoutSauce(connect=connect, read=read)
            except ValueError as e:
                # this may raise a string formatting error.
                err = ("Invalid timeout {}. Pass a (connect, read) "
                       "timeout tuple, or a single float to set "
                       "both timeouts to the same value".format(timeout))
                raise ValueError(err)
        elif isinstance(timeout, TimeoutSauce):
            pass
        else:
            timeout = TimeoutSauce(connect=timeout, read=timeout)
    
        try:
            if not chunked:
                resp = conn.urlopen(
                    method=request.method,
                    url=url,
                    body=request.body,
                    headers=request.headers,
                    redirect=False,
                    assert_same_host=False,
                    preload_content=False,
                    decode_content=False,
                    retries=self.max_retries,
                    timeout=timeout
                )
    
            # Send the request.
            else:
                if hasattr(conn, 'proxy_pool'):
                    conn = conn.proxy_pool
    
                low_conn = conn._get_conn(timeout=DEFAULT_POOL_TIMEOUT)
    
                try:
                    low_conn.putrequest(request.method,
                                        url,
                                        skip_accept_encoding=True)
    
                    for header, value in request.headers.items():
                        low_conn.putheader(header, value)
    
                    low_conn.endheaders()
    
                    for i in request.body:
                        low_conn.send(hex(len(i))[2:].encode('utf-8'))
                        low_conn.send(b'\r\n')
                        low_conn.send(i)
                        low_conn.send(b'\r\n')
                    low_conn.send(b'0\r\n\r\n')
    
                    # Receive the response from the server
                    try:
                        # For Python 2.7, use buffering of HTTP responses
                        r = low_conn.getresponse(buffering=True)
                    except TypeError:
                        # For compatibility with Python 3.3+
                        r = low_conn.getresponse()
    
                    resp = HTTPResponse.from_httplib(
                        r,
                        pool=conn,
                        connection=low_conn,
                        preload_content=False,
                        decode_content=False
                    )
                except:
                    # If we hit any problems here, clean up the connection.
                    # Then, reraise so that we can handle the actual exception.
                    low_conn.close()
                    raise
    
        except (ProtocolError, socket.error) as err:
            raise ConnectionError(err, request=request)
    
        except MaxRetryError as e:
            if isinstance(e.reason, ConnectTimeoutError):
                # TODO: Remove this in 3.0.0: see #2811
                if not isinstance(e.reason, NewConnectionError):
                    raise ConnectTimeout(e, request=request)
    
            if isinstance(e.reason, ResponseError):
                raise RetryError(e, request=request)
    
            if isinstance(e.reason, _ProxyError):
                raise ProxyError(e, request=request)
    
            if isinstance(e.reason, _SSLError):
                # This branch is for urllib3 v1.22 and later.
                raise SSLError(e, request=request)
    
>           raise ConnectionError(e, request=request)
E           requests.exceptions.ConnectionError: HTTPSConnectionPool(host='scicrunch.org', port=443): Max retries exceeded with url: /api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7f754ab42a90>: Failed to establish a new connection: [Errno 110] Connection timed out'))

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/adapters.py:516: ConnectionError
______________________ test_response_sample_subject_size _______________________

self = <urllib3.connection.HTTPSConnection object at 0x7f754ab0d670>

    def _new_conn(self):
        """Establish a socket connection and set nodelay settings on it.
    
        :return: New socket connection.
        """
        extra_kw = {}
        if self.source_address:
            extra_kw["source_address"] = self.source_address
    
        if self.socket_options:
            extra_kw["socket_options"] = self.socket_options
    
        try:
>           conn = connection.create_connection(
                (self._dns_host, self.port), self.timeout, **extra_kw
            )

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connection.py:169: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

address = ('scicrunch.org', 443), timeout = None, source_address = None
socket_options = [(6, 1, 1)]

    def create_connection(
        address,
        timeout=socket._GLOBAL_DEFAULT_TIMEOUT,
        source_address=None,
        socket_options=None,
    ):
        """Connect to *address* and return the socket object.
    
        Convenience function.  Connect to *address* (a 2-tuple ``(host,
        port)``) and return the socket object.  Passing the optional
        *timeout* parameter will set the timeout on the socket instance
        before attempting to connect.  If no *timeout* is supplied, the
        global default timeout setting returned by :func:`socket.getdefaulttimeout`
        is used.  If *source_address* is set it must be a tuple of (host, port)
        for the socket to bind as a source address before making the connection.
        An host of '' or port 0 tells the OS to use the default.
        """
    
        host, port = address
        if host.startswith("["):
            host = host.strip("[]")
        err = None
    
        # Using the value from allowed_gai_family() in the context of getaddrinfo lets
        # us select whether to work with IPv4 DNS records, IPv6 records, or both.
        # The original create_connection function always returns all records.
        family = allowed_gai_family()
    
        try:
            host.encode("idna")
        except UnicodeError:
            return six.raise_from(
                LocationParseError(u"'%s', label empty or too long" % host), None
            )
    
        for res in socket.getaddrinfo(host, port, family, socket.SOCK_STREAM):
            af, socktype, proto, canonname, sa = res
            sock = None
            try:
                sock = socket.socket(af, socktype, proto)
    
                # If provided, set socket level options before connecting.
                _set_socket_options(sock, socket_options)
    
                if timeout is not socket._GLOBAL_DEFAULT_TIMEOUT:
                    sock.settimeout(timeout)
                if source_address:
                    sock.bind(source_address)
                sock.connect(sa)
                return sock
    
            except socket.error as e:
                err = e
                if sock is not None:
                    sock.close()
                    sock = None
    
        if err is not None:
>           raise err

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/util/connection.py:96: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

address = ('scicrunch.org', 443), timeout = None, source_address = None
socket_options = [(6, 1, 1)]

    def create_connection(
        address,
        timeout=socket._GLOBAL_DEFAULT_TIMEOUT,
        source_address=None,
        socket_options=None,
    ):
        """Connect to *address* and return the socket object.
    
        Convenience function.  Connect to *address* (a 2-tuple ``(host,
        port)``) and return the socket object.  Passing the optional
        *timeout* parameter will set the timeout on the socket instance
        before attempting to connect.  If no *timeout* is supplied, the
        global default timeout setting returned by :func:`socket.getdefaulttimeout`
        is used.  If *source_address* is set it must be a tuple of (host, port)
        for the socket to bind as a source address before making the connection.
        An host of '' or port 0 tells the OS to use the default.
        """
    
        host, port = address
        if host.startswith("["):
            host = host.strip("[]")
        err = None
    
        # Using the value from allowed_gai_family() in the context of getaddrinfo lets
        # us select whether to work with IPv4 DNS records, IPv6 records, or both.
        # The original create_connection function always returns all records.
        family = allowed_gai_family()
    
        try:
            host.encode("idna")
        except UnicodeError:
            return six.raise_from(
                LocationParseError(u"'%s', label empty or too long" % host), None
            )
    
        for res in socket.getaddrinfo(host, port, family, socket.SOCK_STREAM):
            af, socktype, proto, canonname, sa = res
            sock = None
            try:
                sock = socket.socket(af, socktype, proto)
    
                # If provided, set socket level options before connecting.
                _set_socket_options(sock, socket_options)
    
                if timeout is not socket._GLOBAL_DEFAULT_TIMEOUT:
                    sock.settimeout(timeout)
                if source_address:
                    sock.bind(source_address)
>               sock.connect(sa)
E               TimeoutError: [Errno 110] Connection timed out

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/util/connection.py:86: TimeoutError

During handling of the above exception, another exception occurred:

self = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754ab0d9a0>
method = 'POST'
url = '/api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf'
body = b'{"size": 10, "from": 0, "query": {"query_string": {"query": "(anatomy.organ.name.aggregate:((liver)))"}}}'
headers = {'User-Agent': 'python-requests/2.25.1', 'Accept-Encoding': 'gzip, deflate', 'Accept': '*/*', 'Connection': 'keep-alive', 'Content-Length': '105', 'Content-Type': 'application/json'}
retries = Retry(total=0, connect=None, read=False, redirect=None, status=None)
redirect = False, assert_same_host = False
timeout = Timeout(connect=None, read=None, total=None), pool_timeout = None
release_conn = False, chunked = False, body_pos = None
response_kw = {'decode_content': False, 'preload_content': False}
parsed_url = Url(scheme=None, auth=None, host=None, port=None, path='/api/1/elastic/SPARC_PortalDatasets_dev/_search', query='api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf', fragment=None)
destination_scheme = None, conn = None, release_this_conn = True
http_tunnel_required = False, err = None, clean_exit = False

    def urlopen(
        self,
        method,
        url,
        body=None,
        headers=None,
        retries=None,
        redirect=True,
        assert_same_host=True,
        timeout=_Default,
        pool_timeout=None,
        release_conn=None,
        chunked=False,
        body_pos=None,
        **response_kw
    ):
        """
        Get a connection from the pool and perform an HTTP request. This is the
        lowest level call for making a request, so you'll need to specify all
        the raw details.
    
        .. note::
    
           More commonly, it's appropriate to use a convenience method provided
           by :class:`.RequestMethods`, such as :meth:`request`.
    
        .. note::
    
           `release_conn` will only behave as expected if
           `preload_content=False` because we want to make
           `preload_content=False` the default behaviour someday soon without
           breaking backwards compatibility.
    
        :param method:
            HTTP request method (such as GET, POST, PUT, etc.)
    
        :param url:
            The URL to perform the request on.
    
        :param body:
            Data to send in the request body, either :class:`str`, :class:`bytes`,
            an iterable of :class:`str`/:class:`bytes`, or a file-like object.
    
        :param headers:
            Dictionary of custom headers to send, such as User-Agent,
            If-None-Match, etc. If None, pool headers are used. If provided,
            these headers completely replace any pool-specific headers.
    
        :param retries:
            Configure the number of retries to allow before raising a
            :class:`~urllib3.exceptions.MaxRetryError` exception.
    
            Pass ``None`` to retry until you receive a response. Pass a
            :class:`~urllib3.util.retry.Retry` object for fine-grained control
            over different types of retries.
            Pass an integer number to retry connection errors that many times,
            but no other types of errors. Pass zero to never retry.
    
            If ``False``, then retries are disabled and any exception is raised
            immediately. Also, instead of raising a MaxRetryError on redirects,
            the redirect response will be returned.
    
        :type retries: :class:`~urllib3.util.retry.Retry`, False, or an int.
    
        :param redirect:
            If True, automatically handle redirects (status codes 301, 302,
            303, 307, 308). Each redirect counts as a retry. Disabling retries
            will disable redirect, too.
    
        :param assert_same_host:
            If ``True``, will make sure that the host of the pool requests is
            consistent else will raise HostChangedError. When ``False``, you can
            use the pool on an HTTP proxy and request foreign hosts.
    
        :param timeout:
            If specified, overrides the default timeout for this one
            request. It may be a float (in seconds) or an instance of
            :class:`urllib3.util.Timeout`.
    
        :param pool_timeout:
            If set and the pool is set to block=True, then this method will
            block for ``pool_timeout`` seconds and raise EmptyPoolError if no
            connection is available within the time period.
    
        :param release_conn:
            If False, then the urlopen call will not release the connection
            back into the pool once a response is received (but will release if
            you read the entire contents of the response such as when
            `preload_content=True`). This is useful if you're not preloading
            the response's content immediately. You will need to call
            ``r.release_conn()`` on the response ``r`` to return the connection
            back into the pool. If None, it takes the value of
            ``response_kw.get('preload_content', True)``.
    
        :param chunked:
            If True, urllib3 will send the body using chunked transfer
            encoding. Otherwise, urllib3 will send the body using the standard
            content-length form. Defaults to False.
    
        :param int body_pos:
            Position to seek to in file-like body in the event of a retry or
            redirect. Typically this won't need to be set because urllib3 will
            auto-populate the value when needed.
    
        :param \\**response_kw:
            Additional parameters are passed to
            :meth:`urllib3.response.HTTPResponse.from_httplib`
        """
    
        parsed_url = parse_url(url)
        destination_scheme = parsed_url.scheme
    
        if headers is None:
            headers = self.headers
    
        if not isinstance(retries, Retry):
            retries = Retry.from_int(retries, redirect=redirect, default=self.retries)
    
        if release_conn is None:
            release_conn = response_kw.get("preload_content", True)
    
        # Check host
        if assert_same_host and not self.is_same_host(url):
            raise HostChangedError(self, url, retries)
    
        # Ensure that the URL we're connecting to is properly encoded
        if url.startswith("/"):
            url = six.ensure_str(_encode_target(url))
        else:
            url = six.ensure_str(parsed_url.url)
    
        conn = None
    
        # Track whether `conn` needs to be released before
        # returning/raising/recursing. Update this variable if necessary, and
        # leave `release_conn` constant throughout the function. That way, if
        # the function recurses, the original value of `release_conn` will be
        # passed down into the recursive call, and its value will be respected.
        #
        # See issue #651 [1] for details.
        #
        # [1] <https://github.com/urllib3/urllib3/issues/651>
        release_this_conn = release_conn
    
        http_tunnel_required = connection_requires_http_tunnel(
            self.proxy, self.proxy_config, destination_scheme
        )
    
        # Merge the proxy headers. Only done when not using HTTP CONNECT. We
        # have to copy the headers dict so we can safely change it without those
        # changes being reflected in anyone else's copy.
        if not http_tunnel_required:
            headers = headers.copy()
            headers.update(self.proxy_headers)
    
        # Must keep the exception bound to a separate variable or else Python 3
        # complains about UnboundLocalError.
        err = None
    
        # Keep track of whether we cleanly exited the except block. This
        # ensures we do proper cleanup in finally.
        clean_exit = False
    
        # Rewind body position, if needed. Record current position
        # for future rewinds in the event of a redirect/retry.
        body_pos = set_file_position(body, body_pos)
    
        try:
            # Request a connection from the queue.
            timeout_obj = self._get_timeout(timeout)
            conn = self._get_conn(timeout=pool_timeout)
    
            conn.timeout = timeout_obj.connect_timeout
    
            is_new_proxy_conn = self.proxy is not None and not getattr(
                conn, "sock", None
            )
            if is_new_proxy_conn and http_tunnel_required:
                self._prepare_proxy(conn)
    
            # Make the request on the httplib connection object.
>           httplib_response = self._make_request(
                conn,
                method,
                url,
                timeout=timeout_obj,
                body=body,
                headers=headers,
                chunked=chunked,
            )

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py:699: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754ab0d9a0>
conn = <urllib3.connection.HTTPSConnection object at 0x7f754ab0d670>
method = 'POST'
url = '/api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf'
timeout = Timeout(connect=None, read=None, total=None), chunked = False
httplib_request_kw = {'body': b'{"size": 10, "from": 0, "query": {"query_string": {"query": "(anatomy.organ.name.aggregate:((liver)))"}}}',...p, deflate', 'Accept': '*/*', 'Connection': 'keep-alive', 'Content-Length': '105', 'Content-Type': 'application/json'}}
timeout_obj = Timeout(connect=None, read=None, total=None)

    def _make_request(
        self, conn, method, url, timeout=_Default, chunked=False, **httplib_request_kw
    ):
        """
        Perform a request on a given urllib connection object taken from our
        pool.
    
        :param conn:
            a connection from one of our connection pools
    
        :param timeout:
            Socket timeout in seconds for the request. This can be a
            float or integer, which will set the same timeout value for
            the socket connect and the socket read, or an instance of
            :class:`urllib3.util.Timeout`, which gives you more fine-grained
            control over your timeouts.
        """
        self.num_requests += 1
    
        timeout_obj = self._get_timeout(timeout)
        timeout_obj.start_connect()
        conn.timeout = timeout_obj.connect_timeout
    
        # Trigger any extra validation we need to do.
        try:
>           self._validate_conn(conn)

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py:382: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754ab0d9a0>
conn = <urllib3.connection.HTTPSConnection object at 0x7f754ab0d670>

    def _validate_conn(self, conn):
        """
        Called right before a request is made, after the socket is created.
        """
        super(HTTPSConnectionPool, self)._validate_conn(conn)
    
        # Force connect early to allow us to validate the connection.
        if not getattr(conn, "sock", None):  # AppEngine might not have  `.sock`
>           conn.connect()

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py:1010: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connection.HTTPSConnection object at 0x7f754ab0d670>

    def connect(self):
        # Add certificate verification
>       conn = self._new_conn()

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connection.py:353: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connection.HTTPSConnection object at 0x7f754ab0d670>

    def _new_conn(self):
        """Establish a socket connection and set nodelay settings on it.
    
        :return: New socket connection.
        """
        extra_kw = {}
        if self.source_address:
            extra_kw["source_address"] = self.source_address
    
        if self.socket_options:
            extra_kw["socket_options"] = self.socket_options
    
        try:
            conn = connection.create_connection(
                (self._dns_host, self.port), self.timeout, **extra_kw
            )
    
        except SocketTimeout:
            raise ConnectTimeoutError(
                self,
                "Connection to %s timed out. (connect timeout=%s)"
                % (self.host, self.timeout),
            )
    
        except SocketError as e:
>           raise NewConnectionError(
                self, "Failed to establish a new connection: %s" % e
            )
E           urllib3.exceptions.NewConnectionError: <urllib3.connection.HTTPSConnection object at 0x7f754ab0d670>: Failed to establish a new connection: [Errno 110] Connection timed out

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connection.py:181: NewConnectionError

During handling of the above exception, another exception occurred:

self = <requests.adapters.HTTPAdapter object at 0x7f754ab0d820>
request = <PreparedRequest [POST]>, stream = False
timeout = Timeout(connect=None, read=None, total=None), verify = True
cert = None, proxies = OrderedDict()

    def send(self, request, stream=False, timeout=None, verify=True, cert=None, proxies=None):
        """Sends PreparedRequest object. Returns Response object.
    
        :param request: The :class:`PreparedRequest <PreparedRequest>` being sent.
        :param stream: (optional) Whether to stream the request content.
        :param timeout: (optional) How long to wait for the server to send
            data before giving up, as a float, or a :ref:`(connect timeout,
            read timeout) <timeouts>` tuple.
        :type timeout: float or tuple or urllib3 Timeout object
        :param verify: (optional) Either a boolean, in which case it controls whether
            we verify the server's TLS certificate, or a string, in which case it
            must be a path to a CA bundle to use
        :param cert: (optional) Any user-provided SSL certificate to be trusted.
        :param proxies: (optional) The proxies dictionary to apply to the request.
        :rtype: requests.Response
        """
    
        try:
            conn = self.get_connection(request.url, proxies)
        except LocationValueError as e:
            raise InvalidURL(e, request=request)
    
        self.cert_verify(conn, request.url, verify, cert)
        url = self.request_url(request, proxies)
        self.add_headers(request, stream=stream, timeout=timeout, verify=verify, cert=cert, proxies=proxies)
    
        chunked = not (request.body is None or 'Content-Length' in request.headers)
    
        if isinstance(timeout, tuple):
            try:
                connect, read = timeout
                timeout = TimeoutSauce(connect=connect, read=read)
            except ValueError as e:
                # this may raise a string formatting error.
                err = ("Invalid timeout {}. Pass a (connect, read) "
                       "timeout tuple, or a single float to set "
                       "both timeouts to the same value".format(timeout))
                raise ValueError(err)
        elif isinstance(timeout, TimeoutSauce):
            pass
        else:
            timeout = TimeoutSauce(connect=timeout, read=timeout)
    
        try:
            if not chunked:
>               resp = conn.urlopen(
                    method=request.method,
                    url=url,
                    body=request.body,
                    headers=request.headers,
                    redirect=False,
                    assert_same_host=False,
                    preload_content=False,
                    decode_content=False,
                    retries=self.max_retries,
                    timeout=timeout
                )

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/adapters.py:439: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754ab0d9a0>
method = 'POST'
url = '/api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf'
body = b'{"size": 10, "from": 0, "query": {"query_string": {"query": "(anatomy.organ.name.aggregate:((liver)))"}}}'
headers = {'User-Agent': 'python-requests/2.25.1', 'Accept-Encoding': 'gzip, deflate', 'Accept': '*/*', 'Connection': 'keep-alive', 'Content-Length': '105', 'Content-Type': 'application/json'}
retries = Retry(total=0, connect=None, read=False, redirect=None, status=None)
redirect = False, assert_same_host = False
timeout = Timeout(connect=None, read=None, total=None), pool_timeout = None
release_conn = False, chunked = False, body_pos = None
response_kw = {'decode_content': False, 'preload_content': False}
parsed_url = Url(scheme=None, auth=None, host=None, port=None, path='/api/1/elastic/SPARC_PortalDatasets_dev/_search', query='api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf', fragment=None)
destination_scheme = None, conn = None, release_this_conn = True
http_tunnel_required = False, err = None, clean_exit = False

    def urlopen(
        self,
        method,
        url,
        body=None,
        headers=None,
        retries=None,
        redirect=True,
        assert_same_host=True,
        timeout=_Default,
        pool_timeout=None,
        release_conn=None,
        chunked=False,
        body_pos=None,
        **response_kw
    ):
        """
        Get a connection from the pool and perform an HTTP request. This is the
        lowest level call for making a request, so you'll need to specify all
        the raw details.
    
        .. note::
    
           More commonly, it's appropriate to use a convenience method provided
           by :class:`.RequestMethods`, such as :meth:`request`.
    
        .. note::
    
           `release_conn` will only behave as expected if
           `preload_content=False` because we want to make
           `preload_content=False` the default behaviour someday soon without
           breaking backwards compatibility.
    
        :param method:
            HTTP request method (such as GET, POST, PUT, etc.)
    
        :param url:
            The URL to perform the request on.
    
        :param body:
            Data to send in the request body, either :class:`str`, :class:`bytes`,
            an iterable of :class:`str`/:class:`bytes`, or a file-like object.
    
        :param headers:
            Dictionary of custom headers to send, such as User-Agent,
            If-None-Match, etc. If None, pool headers are used. If provided,
            these headers completely replace any pool-specific headers.
    
        :param retries:
            Configure the number of retries to allow before raising a
            :class:`~urllib3.exceptions.MaxRetryError` exception.
    
            Pass ``None`` to retry until you receive a response. Pass a
            :class:`~urllib3.util.retry.Retry` object for fine-grained control
            over different types of retries.
            Pass an integer number to retry connection errors that many times,
            but no other types of errors. Pass zero to never retry.
    
            If ``False``, then retries are disabled and any exception is raised
            immediately. Also, instead of raising a MaxRetryError on redirects,
            the redirect response will be returned.
    
        :type retries: :class:`~urllib3.util.retry.Retry`, False, or an int.
    
        :param redirect:
            If True, automatically handle redirects (status codes 301, 302,
            303, 307, 308). Each redirect counts as a retry. Disabling retries
            will disable redirect, too.
    
        :param assert_same_host:
            If ``True``, will make sure that the host of the pool requests is
            consistent else will raise HostChangedError. When ``False``, you can
            use the pool on an HTTP proxy and request foreign hosts.
    
        :param timeout:
            If specified, overrides the default timeout for this one
            request. It may be a float (in seconds) or an instance of
            :class:`urllib3.util.Timeout`.
    
        :param pool_timeout:
            If set and the pool is set to block=True, then this method will
            block for ``pool_timeout`` seconds and raise EmptyPoolError if no
            connection is available within the time period.
    
        :param release_conn:
            If False, then the urlopen call will not release the connection
            back into the pool once a response is received (but will release if
            you read the entire contents of the response such as when
            `preload_content=True`). This is useful if you're not preloading
            the response's content immediately. You will need to call
            ``r.release_conn()`` on the response ``r`` to return the connection
            back into the pool. If None, it takes the value of
            ``response_kw.get('preload_content', True)``.
    
        :param chunked:
            If True, urllib3 will send the body using chunked transfer
            encoding. Otherwise, urllib3 will send the body using the standard
            content-length form. Defaults to False.
    
        :param int body_pos:
            Position to seek to in file-like body in the event of a retry or
            redirect. Typically this won't need to be set because urllib3 will
            auto-populate the value when needed.
    
        :param \\**response_kw:
            Additional parameters are passed to
            :meth:`urllib3.response.HTTPResponse.from_httplib`
        """
    
        parsed_url = parse_url(url)
        destination_scheme = parsed_url.scheme
    
        if headers is None:
            headers = self.headers
    
        if not isinstance(retries, Retry):
            retries = Retry.from_int(retries, redirect=redirect, default=self.retries)
    
        if release_conn is None:
            release_conn = response_kw.get("preload_content", True)
    
        # Check host
        if assert_same_host and not self.is_same_host(url):
            raise HostChangedError(self, url, retries)
    
        # Ensure that the URL we're connecting to is properly encoded
        if url.startswith("/"):
            url = six.ensure_str(_encode_target(url))
        else:
            url = six.ensure_str(parsed_url.url)
    
        conn = None
    
        # Track whether `conn` needs to be released before
        # returning/raising/recursing. Update this variable if necessary, and
        # leave `release_conn` constant throughout the function. That way, if
        # the function recurses, the original value of `release_conn` will be
        # passed down into the recursive call, and its value will be respected.
        #
        # See issue #651 [1] for details.
        #
        # [1] <https://github.com/urllib3/urllib3/issues/651>
        release_this_conn = release_conn
    
        http_tunnel_required = connection_requires_http_tunnel(
            self.proxy, self.proxy_config, destination_scheme
        )
    
        # Merge the proxy headers. Only done when not using HTTP CONNECT. We
        # have to copy the headers dict so we can safely change it without those
        # changes being reflected in anyone else's copy.
        if not http_tunnel_required:
            headers = headers.copy()
            headers.update(self.proxy_headers)
    
        # Must keep the exception bound to a separate variable or else Python 3
        # complains about UnboundLocalError.
        err = None
    
        # Keep track of whether we cleanly exited the except block. This
        # ensures we do proper cleanup in finally.
        clean_exit = False
    
        # Rewind body position, if needed. Record current position
        # for future rewinds in the event of a redirect/retry.
        body_pos = set_file_position(body, body_pos)
    
        try:
            # Request a connection from the queue.
            timeout_obj = self._get_timeout(timeout)
            conn = self._get_conn(timeout=pool_timeout)
    
            conn.timeout = timeout_obj.connect_timeout
    
            is_new_proxy_conn = self.proxy is not None and not getattr(
                conn, "sock", None
            )
            if is_new_proxy_conn and http_tunnel_required:
                self._prepare_proxy(conn)
    
            # Make the request on the httplib connection object.
            httplib_response = self._make_request(
                conn,
                method,
                url,
                timeout=timeout_obj,
                body=body,
                headers=headers,
                chunked=chunked,
            )
    
            # If we're going to release the connection in ``finally:``, then
            # the response doesn't need to know about the connection. Otherwise
            # it will also try to release it and we'll have a double-release
            # mess.
            response_conn = conn if not release_conn else None
    
            # Pass method to Response for length checking
            response_kw["request_method"] = method
    
            # Import httplib's response into our own wrapper object
            response = self.ResponseCls.from_httplib(
                httplib_response,
                pool=self,
                connection=response_conn,
                retries=retries,
                **response_kw
            )
    
            # Everything went great!
            clean_exit = True
    
        except EmptyPoolError:
            # Didn't get a connection from the pool, no need to clean up
            clean_exit = True
            release_this_conn = False
            raise
    
        except (
            TimeoutError,
            HTTPException,
            SocketError,
            ProtocolError,
            BaseSSLError,
            SSLError,
            CertificateError,
        ) as e:
            # Discard the connection for these exceptions. It will be
            # replaced during the next _get_conn() call.
            clean_exit = False
            if isinstance(e, (BaseSSLError, CertificateError)):
                e = SSLError(e)
            elif isinstance(e, (SocketError, NewConnectionError)) and self.proxy:
                e = ProxyError("Cannot connect to proxy.", e)
            elif isinstance(e, (SocketError, HTTPException)):
                e = ProtocolError("Connection aborted.", e)
    
>           retries = retries.increment(
                method, url, error=e, _pool=self, _stacktrace=sys.exc_info()[2]
            )

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py:755: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = Retry(total=0, connect=None, read=False, redirect=None, status=None)
method = 'POST'
url = '/api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf'
response = None
error = NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7f754ab0d670>: Failed to establish a new connection: [Errno 110] Connection timed out')
_pool = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754ab0d9a0>
_stacktrace = <traceback object at 0x7f754a3e56c0>

    def increment(
        self,
        method=None,
        url=None,
        response=None,
        error=None,
        _pool=None,
        _stacktrace=None,
    ):
        """Return a new Retry object with incremented retry counters.
    
        :param response: A response object, or None, if the server did not
            return a response.
        :type response: :class:`~urllib3.response.HTTPResponse`
        :param Exception error: An error encountered during the request, or
            None if the response was received successfully.
    
        :return: A new ``Retry`` object.
        """
        if self.total is False and error:
            # Disabled, indicate to re-raise the error.
            raise six.reraise(type(error), error, _stacktrace)
    
        total = self.total
        if total is not None:
            total -= 1
    
        connect = self.connect
        read = self.read
        redirect = self.redirect
        status_count = self.status
        other = self.other
        cause = "unknown"
        status = None
        redirect_location = None
    
        if error and self._is_connection_error(error):
            # Connect retry?
            if connect is False:
                raise six.reraise(type(error), error, _stacktrace)
            elif connect is not None:
                connect -= 1
    
        elif error and self._is_read_error(error):
            # Read retry?
            if read is False or not self._is_method_retryable(method):
                raise six.reraise(type(error), error, _stacktrace)
            elif read is not None:
                read -= 1
    
        elif error:
            # Other retry?
            if other is not None:
                other -= 1
    
        elif response and response.get_redirect_location():
            # Redirect retry?
            if redirect is not None:
                redirect -= 1
            cause = "too many redirects"
            redirect_location = response.get_redirect_location()
            status = response.status
    
        else:
            # Incrementing because of a server error like a 500 in
            # status_forcelist and the given method is in the allowed_methods
            cause = ResponseError.GENERIC_ERROR
            if response and response.status:
                if status_count is not None:
                    status_count -= 1
                cause = ResponseError.SPECIFIC_ERROR.format(status_code=response.status)
                status = response.status
    
        history = self.history + (
            RequestHistory(method, url, error, status, redirect_location),
        )
    
        new_retry = self.new(
            total=total,
            connect=connect,
            read=read,
            redirect=redirect,
            status=status_count,
            other=other,
            history=history,
        )
    
        if new_retry.is_exhausted():
>           raise MaxRetryError(_pool, url, error or ResponseError(cause))
E           urllib3.exceptions.MaxRetryError: HTTPSConnectionPool(host='scicrunch.org', port=443): Max retries exceeded with url: /api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7f754ab0d670>: Failed to establish a new connection: [Errno 110] Connection timed out'))

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/util/retry.py:574: MaxRetryError

During handling of the above exception, another exception occurred:

client = <FlaskClient <Flask 'app.main'>>

    def test_response_sample_subject_size(client):
        # Only filter search returns the sample and subjectSuze
>       r = client.get('/filter-search/?facet=liver&term=organ')

tests/test_scicrunch.py:311: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/werkzeug/test.py:1029: in get
    return self.open(*args, **kw)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/testing.py:222: in open
    return Client.open(
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/werkzeug/test.py:993: in open
    response = self.run_wsgi_app(environ.copy(), buffered=buffered)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/werkzeug/test.py:884: in run_wsgi_app
    rv = run_wsgi_app(self.application, environ, buffered=buffered)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/werkzeug/test.py:1119: in run_wsgi_app
    app_rv = app(environ, start_response)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:2463: in __call__
    return self.wsgi_app(environ, start_response)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:2449: in wsgi_app
    response = self.handle_exception(e)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask_cors/extension.py:161: in wrapped_function
    return cors_after_request(app.make_response(f(*args, **kwargs)))
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1866: in handle_exception
    reraise(exc_type, exc_value, tb)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/_compat.py:39: in reraise
    raise value
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:2446: in wsgi_app
    response = self.full_dispatch_request()
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1951: in full_dispatch_request
    rv = self.handle_user_exception(e)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask_cors/extension.py:161: in wrapped_function
    return cors_after_request(app.make_response(f(*args, **kwargs)))
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1820: in handle_user_exception
    reraise(exc_type, exc_value, tb)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/_compat.py:39: in reraise
    raise value
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1949: in full_dispatch_request
    rv = self.dispatch_request()
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1935: in dispatch_request
    return self.view_functions[rule.endpoint](**req.view_args)
app/main.py:707: in filter_search
    response = requests.post(
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/api.py:119: in post
    return request('post', url, data=data, json=json, **kwargs)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/api.py:61: in request
    return session.request(method=method, url=url, **kwargs)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/sessions.py:542: in request
    resp = self.send(prep, **send_kwargs)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/sessions.py:655: in send
    r = adapter.send(request, **kwargs)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <requests.adapters.HTTPAdapter object at 0x7f754ab0d820>
request = <PreparedRequest [POST]>, stream = False
timeout = Timeout(connect=None, read=None, total=None), verify = True
cert = None, proxies = OrderedDict()

    def send(self, request, stream=False, timeout=None, verify=True, cert=None, proxies=None):
        """Sends PreparedRequest object. Returns Response object.
    
        :param request: The :class:`PreparedRequest <PreparedRequest>` being sent.
        :param stream: (optional) Whether to stream the request content.
        :param timeout: (optional) How long to wait for the server to send
            data before giving up, as a float, or a :ref:`(connect timeout,
            read timeout) <timeouts>` tuple.
        :type timeout: float or tuple or urllib3 Timeout object
        :param verify: (optional) Either a boolean, in which case it controls whether
            we verify the server's TLS certificate, or a string, in which case it
            must be a path to a CA bundle to use
        :param cert: (optional) Any user-provided SSL certificate to be trusted.
        :param proxies: (optional) The proxies dictionary to apply to the request.
        :rtype: requests.Response
        """
    
        try:
            conn = self.get_connection(request.url, proxies)
        except LocationValueError as e:
            raise InvalidURL(e, request=request)
    
        self.cert_verify(conn, request.url, verify, cert)
        url = self.request_url(request, proxies)
        self.add_headers(request, stream=stream, timeout=timeout, verify=verify, cert=cert, proxies=proxies)
    
        chunked = not (request.body is None or 'Content-Length' in request.headers)
    
        if isinstance(timeout, tuple):
            try:
                connect, read = timeout
                timeout = TimeoutSauce(connect=connect, read=read)
            except ValueError as e:
                # this may raise a string formatting error.
                err = ("Invalid timeout {}. Pass a (connect, read) "
                       "timeout tuple, or a single float to set "
                       "both timeouts to the same value".format(timeout))
                raise ValueError(err)
        elif isinstance(timeout, TimeoutSauce):
            pass
        else:
            timeout = TimeoutSauce(connect=timeout, read=timeout)
    
        try:
            if not chunked:
                resp = conn.urlopen(
                    method=request.method,
                    url=url,
                    body=request.body,
                    headers=request.headers,
                    redirect=False,
                    assert_same_host=False,
                    preload_content=False,
                    decode_content=False,
                    retries=self.max_retries,
                    timeout=timeout
                )
    
            # Send the request.
            else:
                if hasattr(conn, 'proxy_pool'):
                    conn = conn.proxy_pool
    
                low_conn = conn._get_conn(timeout=DEFAULT_POOL_TIMEOUT)
    
                try:
                    low_conn.putrequest(request.method,
                                        url,
                                        skip_accept_encoding=True)
    
                    for header, value in request.headers.items():
                        low_conn.putheader(header, value)
    
                    low_conn.endheaders()
    
                    for i in request.body:
                        low_conn.send(hex(len(i))[2:].encode('utf-8'))
                        low_conn.send(b'\r\n')
                        low_conn.send(i)
                        low_conn.send(b'\r\n')
                    low_conn.send(b'0\r\n\r\n')
    
                    # Receive the response from the server
                    try:
                        # For Python 2.7, use buffering of HTTP responses
                        r = low_conn.getresponse(buffering=True)
                    except TypeError:
                        # For compatibility with Python 3.3+
                        r = low_conn.getresponse()
    
                    resp = HTTPResponse.from_httplib(
                        r,
                        pool=conn,
                        connection=low_conn,
                        preload_content=False,
                        decode_content=False
                    )
                except:
                    # If we hit any problems here, clean up the connection.
                    # Then, reraise so that we can handle the actual exception.
                    low_conn.close()
                    raise
    
        except (ProtocolError, socket.error) as err:
            raise ConnectionError(err, request=request)
    
        except MaxRetryError as e:
            if isinstance(e.reason, ConnectTimeoutError):
                # TODO: Remove this in 3.0.0: see #2811
                if not isinstance(e.reason, NewConnectionError):
                    raise ConnectTimeout(e, request=request)
    
            if isinstance(e.reason, ResponseError):
                raise RetryError(e, request=request)
    
            if isinstance(e.reason, _ProxyError):
                raise ProxyError(e, request=request)
    
            if isinstance(e.reason, _SSLError):
                # This branch is for urllib3 v1.22 and later.
                raise SSLError(e, request=request)
    
>           raise ConnectionError(e, request=request)
E           requests.exceptions.ConnectionError: HTTPSConnectionPool(host='scicrunch.org', port=443): Max retries exceeded with url: /api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7f754ab0d670>: Failed to establish a new connection: [Errno 110] Connection timed out'))

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/adapters.py:516: ConnectionError
_________________________ test_raw_response_structure __________________________

self = <urllib3.connection.HTTPSConnection object at 0x7f754ad1c910>

    def _new_conn(self):
        """Establish a socket connection and set nodelay settings on it.
    
        :return: New socket connection.
        """
        extra_kw = {}
        if self.source_address:
            extra_kw["source_address"] = self.source_address
    
        if self.socket_options:
            extra_kw["socket_options"] = self.socket_options
    
        try:
>           conn = connection.create_connection(
                (self._dns_host, self.port), self.timeout, **extra_kw
            )

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connection.py:169: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

address = ('scicrunch.org', 443), timeout = None, source_address = None
socket_options = [(6, 1, 1)]

    def create_connection(
        address,
        timeout=socket._GLOBAL_DEFAULT_TIMEOUT,
        source_address=None,
        socket_options=None,
    ):
        """Connect to *address* and return the socket object.
    
        Convenience function.  Connect to *address* (a 2-tuple ``(host,
        port)``) and return the socket object.  Passing the optional
        *timeout* parameter will set the timeout on the socket instance
        before attempting to connect.  If no *timeout* is supplied, the
        global default timeout setting returned by :func:`socket.getdefaulttimeout`
        is used.  If *source_address* is set it must be a tuple of (host, port)
        for the socket to bind as a source address before making the connection.
        An host of '' or port 0 tells the OS to use the default.
        """
    
        host, port = address
        if host.startswith("["):
            host = host.strip("[]")
        err = None
    
        # Using the value from allowed_gai_family() in the context of getaddrinfo lets
        # us select whether to work with IPv4 DNS records, IPv6 records, or both.
        # The original create_connection function always returns all records.
        family = allowed_gai_family()
    
        try:
            host.encode("idna")
        except UnicodeError:
            return six.raise_from(
                LocationParseError(u"'%s', label empty or too long" % host), None
            )
    
        for res in socket.getaddrinfo(host, port, family, socket.SOCK_STREAM):
            af, socktype, proto, canonname, sa = res
            sock = None
            try:
                sock = socket.socket(af, socktype, proto)
    
                # If provided, set socket level options before connecting.
                _set_socket_options(sock, socket_options)
    
                if timeout is not socket._GLOBAL_DEFAULT_TIMEOUT:
                    sock.settimeout(timeout)
                if source_address:
                    sock.bind(source_address)
                sock.connect(sa)
                return sock
    
            except socket.error as e:
                err = e
                if sock is not None:
                    sock.close()
                    sock = None
    
        if err is not None:
>           raise err

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/util/connection.py:96: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

address = ('scicrunch.org', 443), timeout = None, source_address = None
socket_options = [(6, 1, 1)]

    def create_connection(
        address,
        timeout=socket._GLOBAL_DEFAULT_TIMEOUT,
        source_address=None,
        socket_options=None,
    ):
        """Connect to *address* and return the socket object.
    
        Convenience function.  Connect to *address* (a 2-tuple ``(host,
        port)``) and return the socket object.  Passing the optional
        *timeout* parameter will set the timeout on the socket instance
        before attempting to connect.  If no *timeout* is supplied, the
        global default timeout setting returned by :func:`socket.getdefaulttimeout`
        is used.  If *source_address* is set it must be a tuple of (host, port)
        for the socket to bind as a source address before making the connection.
        An host of '' or port 0 tells the OS to use the default.
        """
    
        host, port = address
        if host.startswith("["):
            host = host.strip("[]")
        err = None
    
        # Using the value from allowed_gai_family() in the context of getaddrinfo lets
        # us select whether to work with IPv4 DNS records, IPv6 records, or both.
        # The original create_connection function always returns all records.
        family = allowed_gai_family()
    
        try:
            host.encode("idna")
        except UnicodeError:
            return six.raise_from(
                LocationParseError(u"'%s', label empty or too long" % host), None
            )
    
        for res in socket.getaddrinfo(host, port, family, socket.SOCK_STREAM):
            af, socktype, proto, canonname, sa = res
            sock = None
            try:
                sock = socket.socket(af, socktype, proto)
    
                # If provided, set socket level options before connecting.
                _set_socket_options(sock, socket_options)
    
                if timeout is not socket._GLOBAL_DEFAULT_TIMEOUT:
                    sock.settimeout(timeout)
                if source_address:
                    sock.bind(source_address)
>               sock.connect(sa)
E               TimeoutError: [Errno 110] Connection timed out

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/util/connection.py:86: TimeoutError

During handling of the above exception, another exception occurred:

self = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754ad1c490>
method = 'POST'
url = '/api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf'
body = b'{"from": 0, "size": 20, "query": {"query_string": {"query": "computational"}}}'
headers = {'User-Agent': 'python-requests/2.25.1', 'Accept-Encoding': 'gzip, deflate', 'Accept': '*/*', 'Connection': 'keep-alive', 'Content-Length': '78', 'Content-Type': 'application/json'}
retries = Retry(total=0, connect=None, read=False, redirect=None, status=None)
redirect = False, assert_same_host = False
timeout = Timeout(connect=None, read=None, total=None), pool_timeout = None
release_conn = False, chunked = False, body_pos = None
response_kw = {'decode_content': False, 'preload_content': False}
parsed_url = Url(scheme=None, auth=None, host=None, port=None, path='/api/1/elastic/SPARC_PortalDatasets_dev/_search', query='api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf', fragment=None)
destination_scheme = None, conn = None, release_this_conn = True
http_tunnel_required = False, err = None, clean_exit = False

    def urlopen(
        self,
        method,
        url,
        body=None,
        headers=None,
        retries=None,
        redirect=True,
        assert_same_host=True,
        timeout=_Default,
        pool_timeout=None,
        release_conn=None,
        chunked=False,
        body_pos=None,
        **response_kw
    ):
        """
        Get a connection from the pool and perform an HTTP request. This is the
        lowest level call for making a request, so you'll need to specify all
        the raw details.
    
        .. note::
    
           More commonly, it's appropriate to use a convenience method provided
           by :class:`.RequestMethods`, such as :meth:`request`.
    
        .. note::
    
           `release_conn` will only behave as expected if
           `preload_content=False` because we want to make
           `preload_content=False` the default behaviour someday soon without
           breaking backwards compatibility.
    
        :param method:
            HTTP request method (such as GET, POST, PUT, etc.)
    
        :param url:
            The URL to perform the request on.
    
        :param body:
            Data to send in the request body, either :class:`str`, :class:`bytes`,
            an iterable of :class:`str`/:class:`bytes`, or a file-like object.
    
        :param headers:
            Dictionary of custom headers to send, such as User-Agent,
            If-None-Match, etc. If None, pool headers are used. If provided,
            these headers completely replace any pool-specific headers.
    
        :param retries:
            Configure the number of retries to allow before raising a
            :class:`~urllib3.exceptions.MaxRetryError` exception.
    
            Pass ``None`` to retry until you receive a response. Pass a
            :class:`~urllib3.util.retry.Retry` object for fine-grained control
            over different types of retries.
            Pass an integer number to retry connection errors that many times,
            but no other types of errors. Pass zero to never retry.
    
            If ``False``, then retries are disabled and any exception is raised
            immediately. Also, instead of raising a MaxRetryError on redirects,
            the redirect response will be returned.
    
        :type retries: :class:`~urllib3.util.retry.Retry`, False, or an int.
    
        :param redirect:
            If True, automatically handle redirects (status codes 301, 302,
            303, 307, 308). Each redirect counts as a retry. Disabling retries
            will disable redirect, too.
    
        :param assert_same_host:
            If ``True``, will make sure that the host of the pool requests is
            consistent else will raise HostChangedError. When ``False``, you can
            use the pool on an HTTP proxy and request foreign hosts.
    
        :param timeout:
            If specified, overrides the default timeout for this one
            request. It may be a float (in seconds) or an instance of
            :class:`urllib3.util.Timeout`.
    
        :param pool_timeout:
            If set and the pool is set to block=True, then this method will
            block for ``pool_timeout`` seconds and raise EmptyPoolError if no
            connection is available within the time period.
    
        :param release_conn:
            If False, then the urlopen call will not release the connection
            back into the pool once a response is received (but will release if
            you read the entire contents of the response such as when
            `preload_content=True`). This is useful if you're not preloading
            the response's content immediately. You will need to call
            ``r.release_conn()`` on the response ``r`` to return the connection
            back into the pool. If None, it takes the value of
            ``response_kw.get('preload_content', True)``.
    
        :param chunked:
            If True, urllib3 will send the body using chunked transfer
            encoding. Otherwise, urllib3 will send the body using the standard
            content-length form. Defaults to False.
    
        :param int body_pos:
            Position to seek to in file-like body in the event of a retry or
            redirect. Typically this won't need to be set because urllib3 will
            auto-populate the value when needed.
    
        :param \\**response_kw:
            Additional parameters are passed to
            :meth:`urllib3.response.HTTPResponse.from_httplib`
        """
    
        parsed_url = parse_url(url)
        destination_scheme = parsed_url.scheme
    
        if headers is None:
            headers = self.headers
    
        if not isinstance(retries, Retry):
            retries = Retry.from_int(retries, redirect=redirect, default=self.retries)
    
        if release_conn is None:
            release_conn = response_kw.get("preload_content", True)
    
        # Check host
        if assert_same_host and not self.is_same_host(url):
            raise HostChangedError(self, url, retries)
    
        # Ensure that the URL we're connecting to is properly encoded
        if url.startswith("/"):
            url = six.ensure_str(_encode_target(url))
        else:
            url = six.ensure_str(parsed_url.url)
    
        conn = None
    
        # Track whether `conn` needs to be released before
        # returning/raising/recursing. Update this variable if necessary, and
        # leave `release_conn` constant throughout the function. That way, if
        # the function recurses, the original value of `release_conn` will be
        # passed down into the recursive call, and its value will be respected.
        #
        # See issue #651 [1] for details.
        #
        # [1] <https://github.com/urllib3/urllib3/issues/651>
        release_this_conn = release_conn
    
        http_tunnel_required = connection_requires_http_tunnel(
            self.proxy, self.proxy_config, destination_scheme
        )
    
        # Merge the proxy headers. Only done when not using HTTP CONNECT. We
        # have to copy the headers dict so we can safely change it without those
        # changes being reflected in anyone else's copy.
        if not http_tunnel_required:
            headers = headers.copy()
            headers.update(self.proxy_headers)
    
        # Must keep the exception bound to a separate variable or else Python 3
        # complains about UnboundLocalError.
        err = None
    
        # Keep track of whether we cleanly exited the except block. This
        # ensures we do proper cleanup in finally.
        clean_exit = False
    
        # Rewind body position, if needed. Record current position
        # for future rewinds in the event of a redirect/retry.
        body_pos = set_file_position(body, body_pos)
    
        try:
            # Request a connection from the queue.
            timeout_obj = self._get_timeout(timeout)
            conn = self._get_conn(timeout=pool_timeout)
    
            conn.timeout = timeout_obj.connect_timeout
    
            is_new_proxy_conn = self.proxy is not None and not getattr(
                conn, "sock", None
            )
            if is_new_proxy_conn and http_tunnel_required:
                self._prepare_proxy(conn)
    
            # Make the request on the httplib connection object.
>           httplib_response = self._make_request(
                conn,
                method,
                url,
                timeout=timeout_obj,
                body=body,
                headers=headers,
                chunked=chunked,
            )

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py:699: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754ad1c490>
conn = <urllib3.connection.HTTPSConnection object at 0x7f754ad1c910>
method = 'POST'
url = '/api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf'
timeout = Timeout(connect=None, read=None, total=None), chunked = False
httplib_request_kw = {'body': b'{"from": 0, "size": 20, "query": {"query_string": {"query": "computational"}}}', 'headers': {'User-Agent': ...ip, deflate', 'Accept': '*/*', 'Connection': 'keep-alive', 'Content-Length': '78', 'Content-Type': 'application/json'}}
timeout_obj = Timeout(connect=None, read=None, total=None)

    def _make_request(
        self, conn, method, url, timeout=_Default, chunked=False, **httplib_request_kw
    ):
        """
        Perform a request on a given urllib connection object taken from our
        pool.
    
        :param conn:
            a connection from one of our connection pools
    
        :param timeout:
            Socket timeout in seconds for the request. This can be a
            float or integer, which will set the same timeout value for
            the socket connect and the socket read, or an instance of
            :class:`urllib3.util.Timeout`, which gives you more fine-grained
            control over your timeouts.
        """
        self.num_requests += 1
    
        timeout_obj = self._get_timeout(timeout)
        timeout_obj.start_connect()
        conn.timeout = timeout_obj.connect_timeout
    
        # Trigger any extra validation we need to do.
        try:
>           self._validate_conn(conn)

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py:382: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754ad1c490>
conn = <urllib3.connection.HTTPSConnection object at 0x7f754ad1c910>

    def _validate_conn(self, conn):
        """
        Called right before a request is made, after the socket is created.
        """
        super(HTTPSConnectionPool, self)._validate_conn(conn)
    
        # Force connect early to allow us to validate the connection.
        if not getattr(conn, "sock", None):  # AppEngine might not have  `.sock`
>           conn.connect()

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py:1010: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connection.HTTPSConnection object at 0x7f754ad1c910>

    def connect(self):
        # Add certificate verification
>       conn = self._new_conn()

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connection.py:353: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connection.HTTPSConnection object at 0x7f754ad1c910>

    def _new_conn(self):
        """Establish a socket connection and set nodelay settings on it.
    
        :return: New socket connection.
        """
        extra_kw = {}
        if self.source_address:
            extra_kw["source_address"] = self.source_address
    
        if self.socket_options:
            extra_kw["socket_options"] = self.socket_options
    
        try:
            conn = connection.create_connection(
                (self._dns_host, self.port), self.timeout, **extra_kw
            )
    
        except SocketTimeout:
            raise ConnectTimeoutError(
                self,
                "Connection to %s timed out. (connect timeout=%s)"
                % (self.host, self.timeout),
            )
    
        except SocketError as e:
>           raise NewConnectionError(
                self, "Failed to establish a new connection: %s" % e
            )
E           urllib3.exceptions.NewConnectionError: <urllib3.connection.HTTPSConnection object at 0x7f754ad1c910>: Failed to establish a new connection: [Errno 110] Connection timed out

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connection.py:181: NewConnectionError

During handling of the above exception, another exception occurred:

self = <requests.adapters.HTTPAdapter object at 0x7f754a82d7c0>
request = <PreparedRequest [POST]>, stream = False
timeout = Timeout(connect=None, read=None, total=None), verify = True
cert = None, proxies = OrderedDict()

    def send(self, request, stream=False, timeout=None, verify=True, cert=None, proxies=None):
        """Sends PreparedRequest object. Returns Response object.
    
        :param request: The :class:`PreparedRequest <PreparedRequest>` being sent.
        :param stream: (optional) Whether to stream the request content.
        :param timeout: (optional) How long to wait for the server to send
            data before giving up, as a float, or a :ref:`(connect timeout,
            read timeout) <timeouts>` tuple.
        :type timeout: float or tuple or urllib3 Timeout object
        :param verify: (optional) Either a boolean, in which case it controls whether
            we verify the server's TLS certificate, or a string, in which case it
            must be a path to a CA bundle to use
        :param cert: (optional) Any user-provided SSL certificate to be trusted.
        :param proxies: (optional) The proxies dictionary to apply to the request.
        :rtype: requests.Response
        """
    
        try:
            conn = self.get_connection(request.url, proxies)
        except LocationValueError as e:
            raise InvalidURL(e, request=request)
    
        self.cert_verify(conn, request.url, verify, cert)
        url = self.request_url(request, proxies)
        self.add_headers(request, stream=stream, timeout=timeout, verify=verify, cert=cert, proxies=proxies)
    
        chunked = not (request.body is None or 'Content-Length' in request.headers)
    
        if isinstance(timeout, tuple):
            try:
                connect, read = timeout
                timeout = TimeoutSauce(connect=connect, read=read)
            except ValueError as e:
                # this may raise a string formatting error.
                err = ("Invalid timeout {}. Pass a (connect, read) "
                       "timeout tuple, or a single float to set "
                       "both timeouts to the same value".format(timeout))
                raise ValueError(err)
        elif isinstance(timeout, TimeoutSauce):
            pass
        else:
            timeout = TimeoutSauce(connect=timeout, read=timeout)
    
        try:
            if not chunked:
>               resp = conn.urlopen(
                    method=request.method,
                    url=url,
                    body=request.body,
                    headers=request.headers,
                    redirect=False,
                    assert_same_host=False,
                    preload_content=False,
                    decode_content=False,
                    retries=self.max_retries,
                    timeout=timeout
                )

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/adapters.py:439: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754ad1c490>
method = 'POST'
url = '/api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf'
body = b'{"from": 0, "size": 20, "query": {"query_string": {"query": "computational"}}}'
headers = {'User-Agent': 'python-requests/2.25.1', 'Accept-Encoding': 'gzip, deflate', 'Accept': '*/*', 'Connection': 'keep-alive', 'Content-Length': '78', 'Content-Type': 'application/json'}
retries = Retry(total=0, connect=None, read=False, redirect=None, status=None)
redirect = False, assert_same_host = False
timeout = Timeout(connect=None, read=None, total=None), pool_timeout = None
release_conn = False, chunked = False, body_pos = None
response_kw = {'decode_content': False, 'preload_content': False}
parsed_url = Url(scheme=None, auth=None, host=None, port=None, path='/api/1/elastic/SPARC_PortalDatasets_dev/_search', query='api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf', fragment=None)
destination_scheme = None, conn = None, release_this_conn = True
http_tunnel_required = False, err = None, clean_exit = False

    def urlopen(
        self,
        method,
        url,
        body=None,
        headers=None,
        retries=None,
        redirect=True,
        assert_same_host=True,
        timeout=_Default,
        pool_timeout=None,
        release_conn=None,
        chunked=False,
        body_pos=None,
        **response_kw
    ):
        """
        Get a connection from the pool and perform an HTTP request. This is the
        lowest level call for making a request, so you'll need to specify all
        the raw details.
    
        .. note::
    
           More commonly, it's appropriate to use a convenience method provided
           by :class:`.RequestMethods`, such as :meth:`request`.
    
        .. note::
    
           `release_conn` will only behave as expected if
           `preload_content=False` because we want to make
           `preload_content=False` the default behaviour someday soon without
           breaking backwards compatibility.
    
        :param method:
            HTTP request method (such as GET, POST, PUT, etc.)
    
        :param url:
            The URL to perform the request on.
    
        :param body:
            Data to send in the request body, either :class:`str`, :class:`bytes`,
            an iterable of :class:`str`/:class:`bytes`, or a file-like object.
    
        :param headers:
            Dictionary of custom headers to send, such as User-Agent,
            If-None-Match, etc. If None, pool headers are used. If provided,
            these headers completely replace any pool-specific headers.
    
        :param retries:
            Configure the number of retries to allow before raising a
            :class:`~urllib3.exceptions.MaxRetryError` exception.
    
            Pass ``None`` to retry until you receive a response. Pass a
            :class:`~urllib3.util.retry.Retry` object for fine-grained control
            over different types of retries.
            Pass an integer number to retry connection errors that many times,
            but no other types of errors. Pass zero to never retry.
    
            If ``False``, then retries are disabled and any exception is raised
            immediately. Also, instead of raising a MaxRetryError on redirects,
            the redirect response will be returned.
    
        :type retries: :class:`~urllib3.util.retry.Retry`, False, or an int.
    
        :param redirect:
            If True, automatically handle redirects (status codes 301, 302,
            303, 307, 308). Each redirect counts as a retry. Disabling retries
            will disable redirect, too.
    
        :param assert_same_host:
            If ``True``, will make sure that the host of the pool requests is
            consistent else will raise HostChangedError. When ``False``, you can
            use the pool on an HTTP proxy and request foreign hosts.
    
        :param timeout:
            If specified, overrides the default timeout for this one
            request. It may be a float (in seconds) or an instance of
            :class:`urllib3.util.Timeout`.
    
        :param pool_timeout:
            If set and the pool is set to block=True, then this method will
            block for ``pool_timeout`` seconds and raise EmptyPoolError if no
            connection is available within the time period.
    
        :param release_conn:
            If False, then the urlopen call will not release the connection
            back into the pool once a response is received (but will release if
            you read the entire contents of the response such as when
            `preload_content=True`). This is useful if you're not preloading
            the response's content immediately. You will need to call
            ``r.release_conn()`` on the response ``r`` to return the connection
            back into the pool. If None, it takes the value of
            ``response_kw.get('preload_content', True)``.
    
        :param chunked:
            If True, urllib3 will send the body using chunked transfer
            encoding. Otherwise, urllib3 will send the body using the standard
            content-length form. Defaults to False.
    
        :param int body_pos:
            Position to seek to in file-like body in the event of a retry or
            redirect. Typically this won't need to be set because urllib3 will
            auto-populate the value when needed.
    
        :param \\**response_kw:
            Additional parameters are passed to
            :meth:`urllib3.response.HTTPResponse.from_httplib`
        """
    
        parsed_url = parse_url(url)
        destination_scheme = parsed_url.scheme
    
        if headers is None:
            headers = self.headers
    
        if not isinstance(retries, Retry):
            retries = Retry.from_int(retries, redirect=redirect, default=self.retries)
    
        if release_conn is None:
            release_conn = response_kw.get("preload_content", True)
    
        # Check host
        if assert_same_host and not self.is_same_host(url):
            raise HostChangedError(self, url, retries)
    
        # Ensure that the URL we're connecting to is properly encoded
        if url.startswith("/"):
            url = six.ensure_str(_encode_target(url))
        else:
            url = six.ensure_str(parsed_url.url)
    
        conn = None
    
        # Track whether `conn` needs to be released before
        # returning/raising/recursing. Update this variable if necessary, and
        # leave `release_conn` constant throughout the function. That way, if
        # the function recurses, the original value of `release_conn` will be
        # passed down into the recursive call, and its value will be respected.
        #
        # See issue #651 [1] for details.
        #
        # [1] <https://github.com/urllib3/urllib3/issues/651>
        release_this_conn = release_conn
    
        http_tunnel_required = connection_requires_http_tunnel(
            self.proxy, self.proxy_config, destination_scheme
        )
    
        # Merge the proxy headers. Only done when not using HTTP CONNECT. We
        # have to copy the headers dict so we can safely change it without those
        # changes being reflected in anyone else's copy.
        if not http_tunnel_required:
            headers = headers.copy()
            headers.update(self.proxy_headers)
    
        # Must keep the exception bound to a separate variable or else Python 3
        # complains about UnboundLocalError.
        err = None
    
        # Keep track of whether we cleanly exited the except block. This
        # ensures we do proper cleanup in finally.
        clean_exit = False
    
        # Rewind body position, if needed. Record current position
        # for future rewinds in the event of a redirect/retry.
        body_pos = set_file_position(body, body_pos)
    
        try:
            # Request a connection from the queue.
            timeout_obj = self._get_timeout(timeout)
            conn = self._get_conn(timeout=pool_timeout)
    
            conn.timeout = timeout_obj.connect_timeout
    
            is_new_proxy_conn = self.proxy is not None and not getattr(
                conn, "sock", None
            )
            if is_new_proxy_conn and http_tunnel_required:
                self._prepare_proxy(conn)
    
            # Make the request on the httplib connection object.
            httplib_response = self._make_request(
                conn,
                method,
                url,
                timeout=timeout_obj,
                body=body,
                headers=headers,
                chunked=chunked,
            )
    
            # If we're going to release the connection in ``finally:``, then
            # the response doesn't need to know about the connection. Otherwise
            # it will also try to release it and we'll have a double-release
            # mess.
            response_conn = conn if not release_conn else None
    
            # Pass method to Response for length checking
            response_kw["request_method"] = method
    
            # Import httplib's response into our own wrapper object
            response = self.ResponseCls.from_httplib(
                httplib_response,
                pool=self,
                connection=response_conn,
                retries=retries,
                **response_kw
            )
    
            # Everything went great!
            clean_exit = True
    
        except EmptyPoolError:
            # Didn't get a connection from the pool, no need to clean up
            clean_exit = True
            release_this_conn = False
            raise
    
        except (
            TimeoutError,
            HTTPException,
            SocketError,
            ProtocolError,
            BaseSSLError,
            SSLError,
            CertificateError,
        ) as e:
            # Discard the connection for these exceptions. It will be
            # replaced during the next _get_conn() call.
            clean_exit = False
            if isinstance(e, (BaseSSLError, CertificateError)):
                e = SSLError(e)
            elif isinstance(e, (SocketError, NewConnectionError)) and self.proxy:
                e = ProxyError("Cannot connect to proxy.", e)
            elif isinstance(e, (SocketError, HTTPException)):
                e = ProtocolError("Connection aborted.", e)
    
>           retries = retries.increment(
                method, url, error=e, _pool=self, _stacktrace=sys.exc_info()[2]
            )

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py:755: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = Retry(total=0, connect=None, read=False, redirect=None, status=None)
method = 'POST'
url = '/api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf'
response = None
error = NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7f754ad1c910>: Failed to establish a new connection: [Errno 110] Connection timed out')
_pool = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754ad1c490>
_stacktrace = <traceback object at 0x7f754a2d7a80>

    def increment(
        self,
        method=None,
        url=None,
        response=None,
        error=None,
        _pool=None,
        _stacktrace=None,
    ):
        """Return a new Retry object with incremented retry counters.
    
        :param response: A response object, or None, if the server did not
            return a response.
        :type response: :class:`~urllib3.response.HTTPResponse`
        :param Exception error: An error encountered during the request, or
            None if the response was received successfully.
    
        :return: A new ``Retry`` object.
        """
        if self.total is False and error:
            # Disabled, indicate to re-raise the error.
            raise six.reraise(type(error), error, _stacktrace)
    
        total = self.total
        if total is not None:
            total -= 1
    
        connect = self.connect
        read = self.read
        redirect = self.redirect
        status_count = self.status
        other = self.other
        cause = "unknown"
        status = None
        redirect_location = None
    
        if error and self._is_connection_error(error):
            # Connect retry?
            if connect is False:
                raise six.reraise(type(error), error, _stacktrace)
            elif connect is not None:
                connect -= 1
    
        elif error and self._is_read_error(error):
            # Read retry?
            if read is False or not self._is_method_retryable(method):
                raise six.reraise(type(error), error, _stacktrace)
            elif read is not None:
                read -= 1
    
        elif error:
            # Other retry?
            if other is not None:
                other -= 1
    
        elif response and response.get_redirect_location():
            # Redirect retry?
            if redirect is not None:
                redirect -= 1
            cause = "too many redirects"
            redirect_location = response.get_redirect_location()
            status = response.status
    
        else:
            # Incrementing because of a server error like a 500 in
            # status_forcelist and the given method is in the allowed_methods
            cause = ResponseError.GENERIC_ERROR
            if response and response.status:
                if status_count is not None:
                    status_count -= 1
                cause = ResponseError.SPECIFIC_ERROR.format(status_code=response.status)
                status = response.status
    
        history = self.history + (
            RequestHistory(method, url, error, status, redirect_location),
        )
    
        new_retry = self.new(
            total=total,
            connect=connect,
            read=read,
            redirect=redirect,
            status=status_count,
            other=other,
            history=history,
        )
    
        if new_retry.is_exhausted():
>           raise MaxRetryError(_pool, url, error or ResponseError(cause))
E           urllib3.exceptions.MaxRetryError: HTTPSConnectionPool(host='scicrunch.org', port=443): Max retries exceeded with url: /api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7f754ad1c910>: Failed to establish a new connection: [Errno 110] Connection timed out'))

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/util/retry.py:574: MaxRetryError

During handling of the above exception, another exception occurred:

client = <FlaskClient <Flask 'app.main'>>

    def test_raw_response_structure(client):
        # 10.26275/zdxd-84xz
        # 10.26275/duz8-mq3n
        query = create_query_string("computational")
>       data = dataset_search(query)

tests/test_scicrunch.py:428: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
app/main.py:663: in dataset_search
    response = requests.post(f'{Config.SCI_CRUNCH_HOST}/_search',
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/api.py:119: in post
    return request('post', url, data=data, json=json, **kwargs)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/api.py:61: in request
    return session.request(method=method, url=url, **kwargs)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/sessions.py:542: in request
    resp = self.send(prep, **send_kwargs)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/sessions.py:655: in send
    r = adapter.send(request, **kwargs)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <requests.adapters.HTTPAdapter object at 0x7f754a82d7c0>
request = <PreparedRequest [POST]>, stream = False
timeout = Timeout(connect=None, read=None, total=None), verify = True
cert = None, proxies = OrderedDict()

    def send(self, request, stream=False, timeout=None, verify=True, cert=None, proxies=None):
        """Sends PreparedRequest object. Returns Response object.
    
        :param request: The :class:`PreparedRequest <PreparedRequest>` being sent.
        :param stream: (optional) Whether to stream the request content.
        :param timeout: (optional) How long to wait for the server to send
            data before giving up, as a float, or a :ref:`(connect timeout,
            read timeout) <timeouts>` tuple.
        :type timeout: float or tuple or urllib3 Timeout object
        :param verify: (optional) Either a boolean, in which case it controls whether
            we verify the server's TLS certificate, or a string, in which case it
            must be a path to a CA bundle to use
        :param cert: (optional) Any user-provided SSL certificate to be trusted.
        :param proxies: (optional) The proxies dictionary to apply to the request.
        :rtype: requests.Response
        """
    
        try:
            conn = self.get_connection(request.url, proxies)
        except LocationValueError as e:
            raise InvalidURL(e, request=request)
    
        self.cert_verify(conn, request.url, verify, cert)
        url = self.request_url(request, proxies)
        self.add_headers(request, stream=stream, timeout=timeout, verify=verify, cert=cert, proxies=proxies)
    
        chunked = not (request.body is None or 'Content-Length' in request.headers)
    
        if isinstance(timeout, tuple):
            try:
                connect, read = timeout
                timeout = TimeoutSauce(connect=connect, read=read)
            except ValueError as e:
                # this may raise a string formatting error.
                err = ("Invalid timeout {}. Pass a (connect, read) "
                       "timeout tuple, or a single float to set "
                       "both timeouts to the same value".format(timeout))
                raise ValueError(err)
        elif isinstance(timeout, TimeoutSauce):
            pass
        else:
            timeout = TimeoutSauce(connect=timeout, read=timeout)
    
        try:
            if not chunked:
                resp = conn.urlopen(
                    method=request.method,
                    url=url,
                    body=request.body,
                    headers=request.headers,
                    redirect=False,
                    assert_same_host=False,
                    preload_content=False,
                    decode_content=False,
                    retries=self.max_retries,
                    timeout=timeout
                )
    
            # Send the request.
            else:
                if hasattr(conn, 'proxy_pool'):
                    conn = conn.proxy_pool
    
                low_conn = conn._get_conn(timeout=DEFAULT_POOL_TIMEOUT)
    
                try:
                    low_conn.putrequest(request.method,
                                        url,
                                        skip_accept_encoding=True)
    
                    for header, value in request.headers.items():
                        low_conn.putheader(header, value)
    
                    low_conn.endheaders()
    
                    for i in request.body:
                        low_conn.send(hex(len(i))[2:].encode('utf-8'))
                        low_conn.send(b'\r\n')
                        low_conn.send(i)
                        low_conn.send(b'\r\n')
                    low_conn.send(b'0\r\n\r\n')
    
                    # Receive the response from the server
                    try:
                        # For Python 2.7, use buffering of HTTP responses
                        r = low_conn.getresponse(buffering=True)
                    except TypeError:
                        # For compatibility with Python 3.3+
                        r = low_conn.getresponse()
    
                    resp = HTTPResponse.from_httplib(
                        r,
                        pool=conn,
                        connection=low_conn,
                        preload_content=False,
                        decode_content=False
                    )
                except:
                    # If we hit any problems here, clean up the connection.
                    # Then, reraise so that we can handle the actual exception.
                    low_conn.close()
                    raise
    
        except (ProtocolError, socket.error) as err:
            raise ConnectionError(err, request=request)
    
        except MaxRetryError as e:
            if isinstance(e.reason, ConnectTimeoutError):
                # TODO: Remove this in 3.0.0: see #2811
                if not isinstance(e.reason, NewConnectionError):
                    raise ConnectTimeout(e, request=request)
    
            if isinstance(e.reason, ResponseError):
                raise RetryError(e, request=request)
    
            if isinstance(e.reason, _ProxyError):
                raise ProxyError(e, request=request)
    
            if isinstance(e.reason, _SSLError):
                # This branch is for urllib3 v1.22 and later.
                raise SSLError(e, request=request)
    
>           raise ConnectionError(e, request=request)
E           requests.exceptions.ConnectionError: HTTPSConnectionPool(host='scicrunch.org', port=443): Max retries exceeded with url: /api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7f754ad1c910>: Failed to establish a new connection: [Errno 110] Connection timed out'))

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/adapters.py:516: ConnectionError
_________________________ test_get_body_scaffold_info __________________________

self = <urllib3.connection.HTTPSConnection object at 0x7f754acfba60>

    def _new_conn(self):
        """Establish a socket connection and set nodelay settings on it.
    
        :return: New socket connection.
        """
        extra_kw = {}
        if self.source_address:
            extra_kw["source_address"] = self.source_address
    
        if self.socket_options:
            extra_kw["socket_options"] = self.socket_options
    
        try:
>           conn = connection.create_connection(
                (self._dns_host, self.port), self.timeout, **extra_kw
            )

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connection.py:169: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

address = ('scicrunch.org', 443), timeout = None, source_address = None
socket_options = [(6, 1, 1)]

    def create_connection(
        address,
        timeout=socket._GLOBAL_DEFAULT_TIMEOUT,
        source_address=None,
        socket_options=None,
    ):
        """Connect to *address* and return the socket object.
    
        Convenience function.  Connect to *address* (a 2-tuple ``(host,
        port)``) and return the socket object.  Passing the optional
        *timeout* parameter will set the timeout on the socket instance
        before attempting to connect.  If no *timeout* is supplied, the
        global default timeout setting returned by :func:`socket.getdefaulttimeout`
        is used.  If *source_address* is set it must be a tuple of (host, port)
        for the socket to bind as a source address before making the connection.
        An host of '' or port 0 tells the OS to use the default.
        """
    
        host, port = address
        if host.startswith("["):
            host = host.strip("[]")
        err = None
    
        # Using the value from allowed_gai_family() in the context of getaddrinfo lets
        # us select whether to work with IPv4 DNS records, IPv6 records, or both.
        # The original create_connection function always returns all records.
        family = allowed_gai_family()
    
        try:
            host.encode("idna")
        except UnicodeError:
            return six.raise_from(
                LocationParseError(u"'%s', label empty or too long" % host), None
            )
    
        for res in socket.getaddrinfo(host, port, family, socket.SOCK_STREAM):
            af, socktype, proto, canonname, sa = res
            sock = None
            try:
                sock = socket.socket(af, socktype, proto)
    
                # If provided, set socket level options before connecting.
                _set_socket_options(sock, socket_options)
    
                if timeout is not socket._GLOBAL_DEFAULT_TIMEOUT:
                    sock.settimeout(timeout)
                if source_address:
                    sock.bind(source_address)
                sock.connect(sa)
                return sock
    
            except socket.error as e:
                err = e
                if sock is not None:
                    sock.close()
                    sock = None
    
        if err is not None:
>           raise err

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/util/connection.py:96: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

address = ('scicrunch.org', 443), timeout = None, source_address = None
socket_options = [(6, 1, 1)]

    def create_connection(
        address,
        timeout=socket._GLOBAL_DEFAULT_TIMEOUT,
        source_address=None,
        socket_options=None,
    ):
        """Connect to *address* and return the socket object.
    
        Convenience function.  Connect to *address* (a 2-tuple ``(host,
        port)``) and return the socket object.  Passing the optional
        *timeout* parameter will set the timeout on the socket instance
        before attempting to connect.  If no *timeout* is supplied, the
        global default timeout setting returned by :func:`socket.getdefaulttimeout`
        is used.  If *source_address* is set it must be a tuple of (host, port)
        for the socket to bind as a source address before making the connection.
        An host of '' or port 0 tells the OS to use the default.
        """
    
        host, port = address
        if host.startswith("["):
            host = host.strip("[]")
        err = None
    
        # Using the value from allowed_gai_family() in the context of getaddrinfo lets
        # us select whether to work with IPv4 DNS records, IPv6 records, or both.
        # The original create_connection function always returns all records.
        family = allowed_gai_family()
    
        try:
            host.encode("idna")
        except UnicodeError:
            return six.raise_from(
                LocationParseError(u"'%s', label empty or too long" % host), None
            )
    
        for res in socket.getaddrinfo(host, port, family, socket.SOCK_STREAM):
            af, socktype, proto, canonname, sa = res
            sock = None
            try:
                sock = socket.socket(af, socktype, proto)
    
                # If provided, set socket level options before connecting.
                _set_socket_options(sock, socket_options)
    
                if timeout is not socket._GLOBAL_DEFAULT_TIMEOUT:
                    sock.settimeout(timeout)
                if source_address:
                    sock.bind(source_address)
>               sock.connect(sa)
E               TimeoutError: [Errno 110] Connection timed out

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/util/connection.py:86: TimeoutError

During handling of the above exception, another exception occurred:

self = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754a526ca0>
method = 'POST'
url = '/api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf'
body = b'{"query": {"term": {"pennsieve.identifier.aggregate": 307}}}'
headers = {'User-Agent': 'python-requests/2.25.1', 'Accept-Encoding': 'gzip, deflate', 'Accept': '*/*', 'Connection': 'keep-alive', 'Content-Length': '60', 'Content-Type': 'application/json'}
retries = Retry(total=0, connect=None, read=False, redirect=None, status=None)
redirect = False, assert_same_host = False
timeout = Timeout(connect=None, read=None, total=None), pool_timeout = None
release_conn = False, chunked = False, body_pos = None
response_kw = {'decode_content': False, 'preload_content': False}
parsed_url = Url(scheme=None, auth=None, host=None, port=None, path='/api/1/elastic/SPARC_PortalDatasets_dev/_search', query='api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf', fragment=None)
destination_scheme = None, conn = None, release_this_conn = True
http_tunnel_required = False, err = None, clean_exit = False

    def urlopen(
        self,
        method,
        url,
        body=None,
        headers=None,
        retries=None,
        redirect=True,
        assert_same_host=True,
        timeout=_Default,
        pool_timeout=None,
        release_conn=None,
        chunked=False,
        body_pos=None,
        **response_kw
    ):
        """
        Get a connection from the pool and perform an HTTP request. This is the
        lowest level call for making a request, so you'll need to specify all
        the raw details.
    
        .. note::
    
           More commonly, it's appropriate to use a convenience method provided
           by :class:`.RequestMethods`, such as :meth:`request`.
    
        .. note::
    
           `release_conn` will only behave as expected if
           `preload_content=False` because we want to make
           `preload_content=False` the default behaviour someday soon without
           breaking backwards compatibility.
    
        :param method:
            HTTP request method (such as GET, POST, PUT, etc.)
    
        :param url:
            The URL to perform the request on.
    
        :param body:
            Data to send in the request body, either :class:`str`, :class:`bytes`,
            an iterable of :class:`str`/:class:`bytes`, or a file-like object.
    
        :param headers:
            Dictionary of custom headers to send, such as User-Agent,
            If-None-Match, etc. If None, pool headers are used. If provided,
            these headers completely replace any pool-specific headers.
    
        :param retries:
            Configure the number of retries to allow before raising a
            :class:`~urllib3.exceptions.MaxRetryError` exception.
    
            Pass ``None`` to retry until you receive a response. Pass a
            :class:`~urllib3.util.retry.Retry` object for fine-grained control
            over different types of retries.
            Pass an integer number to retry connection errors that many times,
            but no other types of errors. Pass zero to never retry.
    
            If ``False``, then retries are disabled and any exception is raised
            immediately. Also, instead of raising a MaxRetryError on redirects,
            the redirect response will be returned.
    
        :type retries: :class:`~urllib3.util.retry.Retry`, False, or an int.
    
        :param redirect:
            If True, automatically handle redirects (status codes 301, 302,
            303, 307, 308). Each redirect counts as a retry. Disabling retries
            will disable redirect, too.
    
        :param assert_same_host:
            If ``True``, will make sure that the host of the pool requests is
            consistent else will raise HostChangedError. When ``False``, you can
            use the pool on an HTTP proxy and request foreign hosts.
    
        :param timeout:
            If specified, overrides the default timeout for this one
            request. It may be a float (in seconds) or an instance of
            :class:`urllib3.util.Timeout`.
    
        :param pool_timeout:
            If set and the pool is set to block=True, then this method will
            block for ``pool_timeout`` seconds and raise EmptyPoolError if no
            connection is available within the time period.
    
        :param release_conn:
            If False, then the urlopen call will not release the connection
            back into the pool once a response is received (but will release if
            you read the entire contents of the response such as when
            `preload_content=True`). This is useful if you're not preloading
            the response's content immediately. You will need to call
            ``r.release_conn()`` on the response ``r`` to return the connection
            back into the pool. If None, it takes the value of
            ``response_kw.get('preload_content', True)``.
    
        :param chunked:
            If True, urllib3 will send the body using chunked transfer
            encoding. Otherwise, urllib3 will send the body using the standard
            content-length form. Defaults to False.
    
        :param int body_pos:
            Position to seek to in file-like body in the event of a retry or
            redirect. Typically this won't need to be set because urllib3 will
            auto-populate the value when needed.
    
        :param \\**response_kw:
            Additional parameters are passed to
            :meth:`urllib3.response.HTTPResponse.from_httplib`
        """
    
        parsed_url = parse_url(url)
        destination_scheme = parsed_url.scheme
    
        if headers is None:
            headers = self.headers
    
        if not isinstance(retries, Retry):
            retries = Retry.from_int(retries, redirect=redirect, default=self.retries)
    
        if release_conn is None:
            release_conn = response_kw.get("preload_content", True)
    
        # Check host
        if assert_same_host and not self.is_same_host(url):
            raise HostChangedError(self, url, retries)
    
        # Ensure that the URL we're connecting to is properly encoded
        if url.startswith("/"):
            url = six.ensure_str(_encode_target(url))
        else:
            url = six.ensure_str(parsed_url.url)
    
        conn = None
    
        # Track whether `conn` needs to be released before
        # returning/raising/recursing. Update this variable if necessary, and
        # leave `release_conn` constant throughout the function. That way, if
        # the function recurses, the original value of `release_conn` will be
        # passed down into the recursive call, and its value will be respected.
        #
        # See issue #651 [1] for details.
        #
        # [1] <https://github.com/urllib3/urllib3/issues/651>
        release_this_conn = release_conn
    
        http_tunnel_required = connection_requires_http_tunnel(
            self.proxy, self.proxy_config, destination_scheme
        )
    
        # Merge the proxy headers. Only done when not using HTTP CONNECT. We
        # have to copy the headers dict so we can safely change it without those
        # changes being reflected in anyone else's copy.
        if not http_tunnel_required:
            headers = headers.copy()
            headers.update(self.proxy_headers)
    
        # Must keep the exception bound to a separate variable or else Python 3
        # complains about UnboundLocalError.
        err = None
    
        # Keep track of whether we cleanly exited the except block. This
        # ensures we do proper cleanup in finally.
        clean_exit = False
    
        # Rewind body position, if needed. Record current position
        # for future rewinds in the event of a redirect/retry.
        body_pos = set_file_position(body, body_pos)
    
        try:
            # Request a connection from the queue.
            timeout_obj = self._get_timeout(timeout)
            conn = self._get_conn(timeout=pool_timeout)
    
            conn.timeout = timeout_obj.connect_timeout
    
            is_new_proxy_conn = self.proxy is not None and not getattr(
                conn, "sock", None
            )
            if is_new_proxy_conn and http_tunnel_required:
                self._prepare_proxy(conn)
    
            # Make the request on the httplib connection object.
>           httplib_response = self._make_request(
                conn,
                method,
                url,
                timeout=timeout_obj,
                body=body,
                headers=headers,
                chunked=chunked,
            )

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py:699: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754a526ca0>
conn = <urllib3.connection.HTTPSConnection object at 0x7f754acfba60>
method = 'POST'
url = '/api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf'
timeout = Timeout(connect=None, read=None, total=None), chunked = False
httplib_request_kw = {'body': b'{"query": {"term": {"pennsieve.identifier.aggregate": 307}}}', 'headers': {'User-Agent': 'python-requests/2...ip, deflate', 'Accept': '*/*', 'Connection': 'keep-alive', 'Content-Length': '60', 'Content-Type': 'application/json'}}
timeout_obj = Timeout(connect=None, read=None, total=None)

    def _make_request(
        self, conn, method, url, timeout=_Default, chunked=False, **httplib_request_kw
    ):
        """
        Perform a request on a given urllib connection object taken from our
        pool.
    
        :param conn:
            a connection from one of our connection pools
    
        :param timeout:
            Socket timeout in seconds for the request. This can be a
            float or integer, which will set the same timeout value for
            the socket connect and the socket read, or an instance of
            :class:`urllib3.util.Timeout`, which gives you more fine-grained
            control over your timeouts.
        """
        self.num_requests += 1
    
        timeout_obj = self._get_timeout(timeout)
        timeout_obj.start_connect()
        conn.timeout = timeout_obj.connect_timeout
    
        # Trigger any extra validation we need to do.
        try:
>           self._validate_conn(conn)

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py:382: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754a526ca0>
conn = <urllib3.connection.HTTPSConnection object at 0x7f754acfba60>

    def _validate_conn(self, conn):
        """
        Called right before a request is made, after the socket is created.
        """
        super(HTTPSConnectionPool, self)._validate_conn(conn)
    
        # Force connect early to allow us to validate the connection.
        if not getattr(conn, "sock", None):  # AppEngine might not have  `.sock`
>           conn.connect()

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py:1010: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connection.HTTPSConnection object at 0x7f754acfba60>

    def connect(self):
        # Add certificate verification
>       conn = self._new_conn()

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connection.py:353: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connection.HTTPSConnection object at 0x7f754acfba60>

    def _new_conn(self):
        """Establish a socket connection and set nodelay settings on it.
    
        :return: New socket connection.
        """
        extra_kw = {}
        if self.source_address:
            extra_kw["source_address"] = self.source_address
    
        if self.socket_options:
            extra_kw["socket_options"] = self.socket_options
    
        try:
            conn = connection.create_connection(
                (self._dns_host, self.port), self.timeout, **extra_kw
            )
    
        except SocketTimeout:
            raise ConnectTimeoutError(
                self,
                "Connection to %s timed out. (connect timeout=%s)"
                % (self.host, self.timeout),
            )
    
        except SocketError as e:
>           raise NewConnectionError(
                self, "Failed to establish a new connection: %s" % e
            )
E           urllib3.exceptions.NewConnectionError: <urllib3.connection.HTTPSConnection object at 0x7f754acfba60>: Failed to establish a new connection: [Errno 110] Connection timed out

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connection.py:181: NewConnectionError

During handling of the above exception, another exception occurred:

self = <requests.adapters.HTTPAdapter object at 0x7f754a526cd0>
request = <PreparedRequest [POST]>, stream = False
timeout = Timeout(connect=None, read=None, total=None), verify = True
cert = None, proxies = OrderedDict()

    def send(self, request, stream=False, timeout=None, verify=True, cert=None, proxies=None):
        """Sends PreparedRequest object. Returns Response object.
    
        :param request: The :class:`PreparedRequest <PreparedRequest>` being sent.
        :param stream: (optional) Whether to stream the request content.
        :param timeout: (optional) How long to wait for the server to send
            data before giving up, as a float, or a :ref:`(connect timeout,
            read timeout) <timeouts>` tuple.
        :type timeout: float or tuple or urllib3 Timeout object
        :param verify: (optional) Either a boolean, in which case it controls whether
            we verify the server's TLS certificate, or a string, in which case it
            must be a path to a CA bundle to use
        :param cert: (optional) Any user-provided SSL certificate to be trusted.
        :param proxies: (optional) The proxies dictionary to apply to the request.
        :rtype: requests.Response
        """
    
        try:
            conn = self.get_connection(request.url, proxies)
        except LocationValueError as e:
            raise InvalidURL(e, request=request)
    
        self.cert_verify(conn, request.url, verify, cert)
        url = self.request_url(request, proxies)
        self.add_headers(request, stream=stream, timeout=timeout, verify=verify, cert=cert, proxies=proxies)
    
        chunked = not (request.body is None or 'Content-Length' in request.headers)
    
        if isinstance(timeout, tuple):
            try:
                connect, read = timeout
                timeout = TimeoutSauce(connect=connect, read=read)
            except ValueError as e:
                # this may raise a string formatting error.
                err = ("Invalid timeout {}. Pass a (connect, read) "
                       "timeout tuple, or a single float to set "
                       "both timeouts to the same value".format(timeout))
                raise ValueError(err)
        elif isinstance(timeout, TimeoutSauce):
            pass
        else:
            timeout = TimeoutSauce(connect=timeout, read=timeout)
    
        try:
            if not chunked:
>               resp = conn.urlopen(
                    method=request.method,
                    url=url,
                    body=request.body,
                    headers=request.headers,
                    redirect=False,
                    assert_same_host=False,
                    preload_content=False,
                    decode_content=False,
                    retries=self.max_retries,
                    timeout=timeout
                )

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/adapters.py:439: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754a526ca0>
method = 'POST'
url = '/api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf'
body = b'{"query": {"term": {"pennsieve.identifier.aggregate": 307}}}'
headers = {'User-Agent': 'python-requests/2.25.1', 'Accept-Encoding': 'gzip, deflate', 'Accept': '*/*', 'Connection': 'keep-alive', 'Content-Length': '60', 'Content-Type': 'application/json'}
retries = Retry(total=0, connect=None, read=False, redirect=None, status=None)
redirect = False, assert_same_host = False
timeout = Timeout(connect=None, read=None, total=None), pool_timeout = None
release_conn = False, chunked = False, body_pos = None
response_kw = {'decode_content': False, 'preload_content': False}
parsed_url = Url(scheme=None, auth=None, host=None, port=None, path='/api/1/elastic/SPARC_PortalDatasets_dev/_search', query='api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf', fragment=None)
destination_scheme = None, conn = None, release_this_conn = True
http_tunnel_required = False, err = None, clean_exit = False

    def urlopen(
        self,
        method,
        url,
        body=None,
        headers=None,
        retries=None,
        redirect=True,
        assert_same_host=True,
        timeout=_Default,
        pool_timeout=None,
        release_conn=None,
        chunked=False,
        body_pos=None,
        **response_kw
    ):
        """
        Get a connection from the pool and perform an HTTP request. This is the
        lowest level call for making a request, so you'll need to specify all
        the raw details.
    
        .. note::
    
           More commonly, it's appropriate to use a convenience method provided
           by :class:`.RequestMethods`, such as :meth:`request`.
    
        .. note::
    
           `release_conn` will only behave as expected if
           `preload_content=False` because we want to make
           `preload_content=False` the default behaviour someday soon without
           breaking backwards compatibility.
    
        :param method:
            HTTP request method (such as GET, POST, PUT, etc.)
    
        :param url:
            The URL to perform the request on.
    
        :param body:
            Data to send in the request body, either :class:`str`, :class:`bytes`,
            an iterable of :class:`str`/:class:`bytes`, or a file-like object.
    
        :param headers:
            Dictionary of custom headers to send, such as User-Agent,
            If-None-Match, etc. If None, pool headers are used. If provided,
            these headers completely replace any pool-specific headers.
    
        :param retries:
            Configure the number of retries to allow before raising a
            :class:`~urllib3.exceptions.MaxRetryError` exception.
    
            Pass ``None`` to retry until you receive a response. Pass a
            :class:`~urllib3.util.retry.Retry` object for fine-grained control
            over different types of retries.
            Pass an integer number to retry connection errors that many times,
            but no other types of errors. Pass zero to never retry.
    
            If ``False``, then retries are disabled and any exception is raised
            immediately. Also, instead of raising a MaxRetryError on redirects,
            the redirect response will be returned.
    
        :type retries: :class:`~urllib3.util.retry.Retry`, False, or an int.
    
        :param redirect:
            If True, automatically handle redirects (status codes 301, 302,
            303, 307, 308). Each redirect counts as a retry. Disabling retries
            will disable redirect, too.
    
        :param assert_same_host:
            If ``True``, will make sure that the host of the pool requests is
            consistent else will raise HostChangedError. When ``False``, you can
            use the pool on an HTTP proxy and request foreign hosts.
    
        :param timeout:
            If specified, overrides the default timeout for this one
            request. It may be a float (in seconds) or an instance of
            :class:`urllib3.util.Timeout`.
    
        :param pool_timeout:
            If set and the pool is set to block=True, then this method will
            block for ``pool_timeout`` seconds and raise EmptyPoolError if no
            connection is available within the time period.
    
        :param release_conn:
            If False, then the urlopen call will not release the connection
            back into the pool once a response is received (but will release if
            you read the entire contents of the response such as when
            `preload_content=True`). This is useful if you're not preloading
            the response's content immediately. You will need to call
            ``r.release_conn()`` on the response ``r`` to return the connection
            back into the pool. If None, it takes the value of
            ``response_kw.get('preload_content', True)``.
    
        :param chunked:
            If True, urllib3 will send the body using chunked transfer
            encoding. Otherwise, urllib3 will send the body using the standard
            content-length form. Defaults to False.
    
        :param int body_pos:
            Position to seek to in file-like body in the event of a retry or
            redirect. Typically this won't need to be set because urllib3 will
            auto-populate the value when needed.
    
        :param \\**response_kw:
            Additional parameters are passed to
            :meth:`urllib3.response.HTTPResponse.from_httplib`
        """
    
        parsed_url = parse_url(url)
        destination_scheme = parsed_url.scheme
    
        if headers is None:
            headers = self.headers
    
        if not isinstance(retries, Retry):
            retries = Retry.from_int(retries, redirect=redirect, default=self.retries)
    
        if release_conn is None:
            release_conn = response_kw.get("preload_content", True)
    
        # Check host
        if assert_same_host and not self.is_same_host(url):
            raise HostChangedError(self, url, retries)
    
        # Ensure that the URL we're connecting to is properly encoded
        if url.startswith("/"):
            url = six.ensure_str(_encode_target(url))
        else:
            url = six.ensure_str(parsed_url.url)
    
        conn = None
    
        # Track whether `conn` needs to be released before
        # returning/raising/recursing. Update this variable if necessary, and
        # leave `release_conn` constant throughout the function. That way, if
        # the function recurses, the original value of `release_conn` will be
        # passed down into the recursive call, and its value will be respected.
        #
        # See issue #651 [1] for details.
        #
        # [1] <https://github.com/urllib3/urllib3/issues/651>
        release_this_conn = release_conn
    
        http_tunnel_required = connection_requires_http_tunnel(
            self.proxy, self.proxy_config, destination_scheme
        )
    
        # Merge the proxy headers. Only done when not using HTTP CONNECT. We
        # have to copy the headers dict so we can safely change it without those
        # changes being reflected in anyone else's copy.
        if not http_tunnel_required:
            headers = headers.copy()
            headers.update(self.proxy_headers)
    
        # Must keep the exception bound to a separate variable or else Python 3
        # complains about UnboundLocalError.
        err = None
    
        # Keep track of whether we cleanly exited the except block. This
        # ensures we do proper cleanup in finally.
        clean_exit = False
    
        # Rewind body position, if needed. Record current position
        # for future rewinds in the event of a redirect/retry.
        body_pos = set_file_position(body, body_pos)
    
        try:
            # Request a connection from the queue.
            timeout_obj = self._get_timeout(timeout)
            conn = self._get_conn(timeout=pool_timeout)
    
            conn.timeout = timeout_obj.connect_timeout
    
            is_new_proxy_conn = self.proxy is not None and not getattr(
                conn, "sock", None
            )
            if is_new_proxy_conn and http_tunnel_required:
                self._prepare_proxy(conn)
    
            # Make the request on the httplib connection object.
            httplib_response = self._make_request(
                conn,
                method,
                url,
                timeout=timeout_obj,
                body=body,
                headers=headers,
                chunked=chunked,
            )
    
            # If we're going to release the connection in ``finally:``, then
            # the response doesn't need to know about the connection. Otherwise
            # it will also try to release it and we'll have a double-release
            # mess.
            response_conn = conn if not release_conn else None
    
            # Pass method to Response for length checking
            response_kw["request_method"] = method
    
            # Import httplib's response into our own wrapper object
            response = self.ResponseCls.from_httplib(
                httplib_response,
                pool=self,
                connection=response_conn,
                retries=retries,
                **response_kw
            )
    
            # Everything went great!
            clean_exit = True
    
        except EmptyPoolError:
            # Didn't get a connection from the pool, no need to clean up
            clean_exit = True
            release_this_conn = False
            raise
    
        except (
            TimeoutError,
            HTTPException,
            SocketError,
            ProtocolError,
            BaseSSLError,
            SSLError,
            CertificateError,
        ) as e:
            # Discard the connection for these exceptions. It will be
            # replaced during the next _get_conn() call.
            clean_exit = False
            if isinstance(e, (BaseSSLError, CertificateError)):
                e = SSLError(e)
            elif isinstance(e, (SocketError, NewConnectionError)) and self.proxy:
                e = ProxyError("Cannot connect to proxy.", e)
            elif isinstance(e, (SocketError, HTTPException)):
                e = ProtocolError("Connection aborted.", e)
    
>           retries = retries.increment(
                method, url, error=e, _pool=self, _stacktrace=sys.exc_info()[2]
            )

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py:755: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = Retry(total=0, connect=None, read=False, redirect=None, status=None)
method = 'POST'
url = '/api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf'
response = None
error = NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7f754acfba60>: Failed to establish a new connection: [Errno 110] Connection timed out')
_pool = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754a526ca0>
_stacktrace = <traceback object at 0x7f754a5b5240>

    def increment(
        self,
        method=None,
        url=None,
        response=None,
        error=None,
        _pool=None,
        _stacktrace=None,
    ):
        """Return a new Retry object with incremented retry counters.
    
        :param response: A response object, or None, if the server did not
            return a response.
        :type response: :class:`~urllib3.response.HTTPResponse`
        :param Exception error: An error encountered during the request, or
            None if the response was received successfully.
    
        :return: A new ``Retry`` object.
        """
        if self.total is False and error:
            # Disabled, indicate to re-raise the error.
            raise six.reraise(type(error), error, _stacktrace)
    
        total = self.total
        if total is not None:
            total -= 1
    
        connect = self.connect
        read = self.read
        redirect = self.redirect
        status_count = self.status
        other = self.other
        cause = "unknown"
        status = None
        redirect_location = None
    
        if error and self._is_connection_error(error):
            # Connect retry?
            if connect is False:
                raise six.reraise(type(error), error, _stacktrace)
            elif connect is not None:
                connect -= 1
    
        elif error and self._is_read_error(error):
            # Read retry?
            if read is False or not self._is_method_retryable(method):
                raise six.reraise(type(error), error, _stacktrace)
            elif read is not None:
                read -= 1
    
        elif error:
            # Other retry?
            if other is not None:
                other -= 1
    
        elif response and response.get_redirect_location():
            # Redirect retry?
            if redirect is not None:
                redirect -= 1
            cause = "too many redirects"
            redirect_location = response.get_redirect_location()
            status = response.status
    
        else:
            # Incrementing because of a server error like a 500 in
            # status_forcelist and the given method is in the allowed_methods
            cause = ResponseError.GENERIC_ERROR
            if response and response.status:
                if status_count is not None:
                    status_count -= 1
                cause = ResponseError.SPECIFIC_ERROR.format(status_code=response.status)
                status = response.status
    
        history = self.history + (
            RequestHistory(method, url, error, status, redirect_location),
        )
    
        new_retry = self.new(
            total=total,
            connect=connect,
            read=read,
            redirect=redirect,
            status=status_count,
            other=other,
            history=history,
        )
    
        if new_retry.is_exhausted():
>           raise MaxRetryError(_pool, url, error or ResponseError(cause))
E           urllib3.exceptions.MaxRetryError: HTTPSConnectionPool(host='scicrunch.org', port=443): Max retries exceeded with url: /api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7f754acfba60>: Failed to establish a new connection: [Errno 110] Connection timed out'))

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/util/retry.py:574: MaxRetryError

During handling of the above exception, another exception occurred:

client = <FlaskClient <Flask 'app.main'>>

    def test_get_body_scaffold_info(client):
        # Test if we get a shorter list of uberons with species specified
>       r = client.get('/get_body_scaffold_info/human')

tests/test_scicrunch.py:458: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/werkzeug/test.py:1029: in get
    return self.open(*args, **kw)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/testing.py:222: in open
    return Client.open(
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/werkzeug/test.py:993: in open
    response = self.run_wsgi_app(environ.copy(), buffered=buffered)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/werkzeug/test.py:884: in run_wsgi_app
    rv = run_wsgi_app(self.application, environ, buffered=buffered)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/werkzeug/test.py:1119: in run_wsgi_app
    app_rv = app(environ, start_response)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:2463: in __call__
    return self.wsgi_app(environ, start_response)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:2449: in wsgi_app
    response = self.handle_exception(e)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask_cors/extension.py:161: in wrapped_function
    return cors_after_request(app.make_response(f(*args, **kwargs)))
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1866: in handle_exception
    reraise(exc_type, exc_value, tb)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/_compat.py:39: in reraise
    raise value
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:2446: in wsgi_app
    response = self.full_dispatch_request()
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1951: in full_dispatch_request
    rv = self.handle_user_exception(e)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask_cors/extension.py:161: in wrapped_function
    return cors_after_request(app.make_response(f(*args, **kwargs)))
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1820: in handle_user_exception
    reraise(exc_type, exc_value, tb)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/_compat.py:39: in reraise
    raise value
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1949: in full_dispatch_request
    rv = self.dispatch_request()
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1935: in dispatch_request
    return self.view_functions[rule.endpoint](**req.view_args)
app/main.py:906: in get_body_scaffold_info
    result = process_get_first_scaffold_info(dataset_search(query))
app/main.py:663: in dataset_search
    response = requests.post(f'{Config.SCI_CRUNCH_HOST}/_search',
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/api.py:119: in post
    return request('post', url, data=data, json=json, **kwargs)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/api.py:61: in request
    return session.request(method=method, url=url, **kwargs)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/sessions.py:542: in request
    resp = self.send(prep, **send_kwargs)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/sessions.py:655: in send
    r = adapter.send(request, **kwargs)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <requests.adapters.HTTPAdapter object at 0x7f754a526cd0>
request = <PreparedRequest [POST]>, stream = False
timeout = Timeout(connect=None, read=None, total=None), verify = True
cert = None, proxies = OrderedDict()

    def send(self, request, stream=False, timeout=None, verify=True, cert=None, proxies=None):
        """Sends PreparedRequest object. Returns Response object.
    
        :param request: The :class:`PreparedRequest <PreparedRequest>` being sent.
        :param stream: (optional) Whether to stream the request content.
        :param timeout: (optional) How long to wait for the server to send
            data before giving up, as a float, or a :ref:`(connect timeout,
            read timeout) <timeouts>` tuple.
        :type timeout: float or tuple or urllib3 Timeout object
        :param verify: (optional) Either a boolean, in which case it controls whether
            we verify the server's TLS certificate, or a string, in which case it
            must be a path to a CA bundle to use
        :param cert: (optional) Any user-provided SSL certificate to be trusted.
        :param proxies: (optional) The proxies dictionary to apply to the request.
        :rtype: requests.Response
        """
    
        try:
            conn = self.get_connection(request.url, proxies)
        except LocationValueError as e:
            raise InvalidURL(e, request=request)
    
        self.cert_verify(conn, request.url, verify, cert)
        url = self.request_url(request, proxies)
        self.add_headers(request, stream=stream, timeout=timeout, verify=verify, cert=cert, proxies=proxies)
    
        chunked = not (request.body is None or 'Content-Length' in request.headers)
    
        if isinstance(timeout, tuple):
            try:
                connect, read = timeout
                timeout = TimeoutSauce(connect=connect, read=read)
            except ValueError as e:
                # this may raise a string formatting error.
                err = ("Invalid timeout {}. Pass a (connect, read) "
                       "timeout tuple, or a single float to set "
                       "both timeouts to the same value".format(timeout))
                raise ValueError(err)
        elif isinstance(timeout, TimeoutSauce):
            pass
        else:
            timeout = TimeoutSauce(connect=timeout, read=timeout)
    
        try:
            if not chunked:
                resp = conn.urlopen(
                    method=request.method,
                    url=url,
                    body=request.body,
                    headers=request.headers,
                    redirect=False,
                    assert_same_host=False,
                    preload_content=False,
                    decode_content=False,
                    retries=self.max_retries,
                    timeout=timeout
                )
    
            # Send the request.
            else:
                if hasattr(conn, 'proxy_pool'):
                    conn = conn.proxy_pool
    
                low_conn = conn._get_conn(timeout=DEFAULT_POOL_TIMEOUT)
    
                try:
                    low_conn.putrequest(request.method,
                                        url,
                                        skip_accept_encoding=True)
    
                    for header, value in request.headers.items():
                        low_conn.putheader(header, value)
    
                    low_conn.endheaders()
    
                    for i in request.body:
                        low_conn.send(hex(len(i))[2:].encode('utf-8'))
                        low_conn.send(b'\r\n')
                        low_conn.send(i)
                        low_conn.send(b'\r\n')
                    low_conn.send(b'0\r\n\r\n')
    
                    # Receive the response from the server
                    try:
                        # For Python 2.7, use buffering of HTTP responses
                        r = low_conn.getresponse(buffering=True)
                    except TypeError:
                        # For compatibility with Python 3.3+
                        r = low_conn.getresponse()
    
                    resp = HTTPResponse.from_httplib(
                        r,
                        pool=conn,
                        connection=low_conn,
                        preload_content=False,
                        decode_content=False
                    )
                except:
                    # If we hit any problems here, clean up the connection.
                    # Then, reraise so that we can handle the actual exception.
                    low_conn.close()
                    raise
    
        except (ProtocolError, socket.error) as err:
            raise ConnectionError(err, request=request)
    
        except MaxRetryError as e:
            if isinstance(e.reason, ConnectTimeoutError):
                # TODO: Remove this in 3.0.0: see #2811
                if not isinstance(e.reason, NewConnectionError):
                    raise ConnectTimeout(e, request=request)
    
            if isinstance(e.reason, ResponseError):
                raise RetryError(e, request=request)
    
            if isinstance(e.reason, _ProxyError):
                raise ProxyError(e, request=request)
    
            if isinstance(e.reason, _SSLError):
                # This branch is for urllib3 v1.22 and later.
                raise SSLError(e, request=request)
    
>           raise ConnectionError(e, request=request)
E           requests.exceptions.ConnectionError: HTTPSConnectionPool(host='scicrunch.org', port=443): Max retries exceeded with url: /api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7f754acfba60>: Failed to establish a new connection: [Errno 110] Connection timed out'))

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/adapters.py:516: ConnectionError
_____________________________ test_getting_curies ______________________________

self = <urllib3.connection.HTTPSConnection object at 0x7f754a8d0460>

    def _new_conn(self):
        """Establish a socket connection and set nodelay settings on it.
    
        :return: New socket connection.
        """
        extra_kw = {}
        if self.source_address:
            extra_kw["source_address"] = self.source_address
    
        if self.socket_options:
            extra_kw["socket_options"] = self.socket_options
    
        try:
>           conn = connection.create_connection(
                (self._dns_host, self.port), self.timeout, **extra_kw
            )

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connection.py:169: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

address = ('scicrunch.org', 443), timeout = None, source_address = None
socket_options = [(6, 1, 1)]

    def create_connection(
        address,
        timeout=socket._GLOBAL_DEFAULT_TIMEOUT,
        source_address=None,
        socket_options=None,
    ):
        """Connect to *address* and return the socket object.
    
        Convenience function.  Connect to *address* (a 2-tuple ``(host,
        port)``) and return the socket object.  Passing the optional
        *timeout* parameter will set the timeout on the socket instance
        before attempting to connect.  If no *timeout* is supplied, the
        global default timeout setting returned by :func:`socket.getdefaulttimeout`
        is used.  If *source_address* is set it must be a tuple of (host, port)
        for the socket to bind as a source address before making the connection.
        An host of '' or port 0 tells the OS to use the default.
        """
    
        host, port = address
        if host.startswith("["):
            host = host.strip("[]")
        err = None
    
        # Using the value from allowed_gai_family() in the context of getaddrinfo lets
        # us select whether to work with IPv4 DNS records, IPv6 records, or both.
        # The original create_connection function always returns all records.
        family = allowed_gai_family()
    
        try:
            host.encode("idna")
        except UnicodeError:
            return six.raise_from(
                LocationParseError(u"'%s', label empty or too long" % host), None
            )
    
        for res in socket.getaddrinfo(host, port, family, socket.SOCK_STREAM):
            af, socktype, proto, canonname, sa = res
            sock = None
            try:
                sock = socket.socket(af, socktype, proto)
    
                # If provided, set socket level options before connecting.
                _set_socket_options(sock, socket_options)
    
                if timeout is not socket._GLOBAL_DEFAULT_TIMEOUT:
                    sock.settimeout(timeout)
                if source_address:
                    sock.bind(source_address)
                sock.connect(sa)
                return sock
    
            except socket.error as e:
                err = e
                if sock is not None:
                    sock.close()
                    sock = None
    
        if err is not None:
>           raise err

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/util/connection.py:96: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

address = ('scicrunch.org', 443), timeout = None, source_address = None
socket_options = [(6, 1, 1)]

    def create_connection(
        address,
        timeout=socket._GLOBAL_DEFAULT_TIMEOUT,
        source_address=None,
        socket_options=None,
    ):
        """Connect to *address* and return the socket object.
    
        Convenience function.  Connect to *address* (a 2-tuple ``(host,
        port)``) and return the socket object.  Passing the optional
        *timeout* parameter will set the timeout on the socket instance
        before attempting to connect.  If no *timeout* is supplied, the
        global default timeout setting returned by :func:`socket.getdefaulttimeout`
        is used.  If *source_address* is set it must be a tuple of (host, port)
        for the socket to bind as a source address before making the connection.
        An host of '' or port 0 tells the OS to use the default.
        """
    
        host, port = address
        if host.startswith("["):
            host = host.strip("[]")
        err = None
    
        # Using the value from allowed_gai_family() in the context of getaddrinfo lets
        # us select whether to work with IPv4 DNS records, IPv6 records, or both.
        # The original create_connection function always returns all records.
        family = allowed_gai_family()
    
        try:
            host.encode("idna")
        except UnicodeError:
            return six.raise_from(
                LocationParseError(u"'%s', label empty or too long" % host), None
            )
    
        for res in socket.getaddrinfo(host, port, family, socket.SOCK_STREAM):
            af, socktype, proto, canonname, sa = res
            sock = None
            try:
                sock = socket.socket(af, socktype, proto)
    
                # If provided, set socket level options before connecting.
                _set_socket_options(sock, socket_options)
    
                if timeout is not socket._GLOBAL_DEFAULT_TIMEOUT:
                    sock.settimeout(timeout)
                if source_address:
                    sock.bind(source_address)
>               sock.connect(sa)
E               TimeoutError: [Errno 110] Connection timed out

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/util/connection.py:86: TimeoutError

During handling of the above exception, another exception occurred:

self = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754a335970>
method = 'POST'
url = '/api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf'
body = b'{"from": 0, "size": 0, "aggregations": {"names_and_curies": {"terms": {"script": {"lang": "painless", "inline": "def...'][\'anatomy\'][\'organ\'] != null ) { a = params[\'_source\'][\'anatomy\'][\'organ\'];}} return a;"}, "size": 200}}}}'
headers = {'User-Agent': 'python-requests/2.25.1', 'Accept-Encoding': 'gzip, deflate', 'Accept': '*/*', 'Connection': 'keep-alive', 'Content-Length': '294', 'Content-Type': 'application/json'}
retries = Retry(total=0, connect=None, read=False, redirect=None, status=None)
redirect = False, assert_same_host = False
timeout = Timeout(connect=None, read=None, total=None), pool_timeout = None
release_conn = False, chunked = False, body_pos = None
response_kw = {'decode_content': False, 'preload_content': False}
parsed_url = Url(scheme=None, auth=None, host=None, port=None, path='/api/1/elastic/SPARC_PortalDatasets_dev/_search', query='api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf', fragment=None)
destination_scheme = None, conn = None, release_this_conn = True
http_tunnel_required = False, err = None, clean_exit = False

    def urlopen(
        self,
        method,
        url,
        body=None,
        headers=None,
        retries=None,
        redirect=True,
        assert_same_host=True,
        timeout=_Default,
        pool_timeout=None,
        release_conn=None,
        chunked=False,
        body_pos=None,
        **response_kw
    ):
        """
        Get a connection from the pool and perform an HTTP request. This is the
        lowest level call for making a request, so you'll need to specify all
        the raw details.
    
        .. note::
    
           More commonly, it's appropriate to use a convenience method provided
           by :class:`.RequestMethods`, such as :meth:`request`.
    
        .. note::
    
           `release_conn` will only behave as expected if
           `preload_content=False` because we want to make
           `preload_content=False` the default behaviour someday soon without
           breaking backwards compatibility.
    
        :param method:
            HTTP request method (such as GET, POST, PUT, etc.)
    
        :param url:
            The URL to perform the request on.
    
        :param body:
            Data to send in the request body, either :class:`str`, :class:`bytes`,
            an iterable of :class:`str`/:class:`bytes`, or a file-like object.
    
        :param headers:
            Dictionary of custom headers to send, such as User-Agent,
            If-None-Match, etc. If None, pool headers are used. If provided,
            these headers completely replace any pool-specific headers.
    
        :param retries:
            Configure the number of retries to allow before raising a
            :class:`~urllib3.exceptions.MaxRetryError` exception.
    
            Pass ``None`` to retry until you receive a response. Pass a
            :class:`~urllib3.util.retry.Retry` object for fine-grained control
            over different types of retries.
            Pass an integer number to retry connection errors that many times,
            but no other types of errors. Pass zero to never retry.
    
            If ``False``, then retries are disabled and any exception is raised
            immediately. Also, instead of raising a MaxRetryError on redirects,
            the redirect response will be returned.
    
        :type retries: :class:`~urllib3.util.retry.Retry`, False, or an int.
    
        :param redirect:
            If True, automatically handle redirects (status codes 301, 302,
            303, 307, 308). Each redirect counts as a retry. Disabling retries
            will disable redirect, too.
    
        :param assert_same_host:
            If ``True``, will make sure that the host of the pool requests is
            consistent else will raise HostChangedError. When ``False``, you can
            use the pool on an HTTP proxy and request foreign hosts.
    
        :param timeout:
            If specified, overrides the default timeout for this one
            request. It may be a float (in seconds) or an instance of
            :class:`urllib3.util.Timeout`.
    
        :param pool_timeout:
            If set and the pool is set to block=True, then this method will
            block for ``pool_timeout`` seconds and raise EmptyPoolError if no
            connection is available within the time period.
    
        :param release_conn:
            If False, then the urlopen call will not release the connection
            back into the pool once a response is received (but will release if
            you read the entire contents of the response such as when
            `preload_content=True`). This is useful if you're not preloading
            the response's content immediately. You will need to call
            ``r.release_conn()`` on the response ``r`` to return the connection
            back into the pool. If None, it takes the value of
            ``response_kw.get('preload_content', True)``.
    
        :param chunked:
            If True, urllib3 will send the body using chunked transfer
            encoding. Otherwise, urllib3 will send the body using the standard
            content-length form. Defaults to False.
    
        :param int body_pos:
            Position to seek to in file-like body in the event of a retry or
            redirect. Typically this won't need to be set because urllib3 will
            auto-populate the value when needed.
    
        :param \\**response_kw:
            Additional parameters are passed to
            :meth:`urllib3.response.HTTPResponse.from_httplib`
        """
    
        parsed_url = parse_url(url)
        destination_scheme = parsed_url.scheme
    
        if headers is None:
            headers = self.headers
    
        if not isinstance(retries, Retry):
            retries = Retry.from_int(retries, redirect=redirect, default=self.retries)
    
        if release_conn is None:
            release_conn = response_kw.get("preload_content", True)
    
        # Check host
        if assert_same_host and not self.is_same_host(url):
            raise HostChangedError(self, url, retries)
    
        # Ensure that the URL we're connecting to is properly encoded
        if url.startswith("/"):
            url = six.ensure_str(_encode_target(url))
        else:
            url = six.ensure_str(parsed_url.url)
    
        conn = None
    
        # Track whether `conn` needs to be released before
        # returning/raising/recursing. Update this variable if necessary, and
        # leave `release_conn` constant throughout the function. That way, if
        # the function recurses, the original value of `release_conn` will be
        # passed down into the recursive call, and its value will be respected.
        #
        # See issue #651 [1] for details.
        #
        # [1] <https://github.com/urllib3/urllib3/issues/651>
        release_this_conn = release_conn
    
        http_tunnel_required = connection_requires_http_tunnel(
            self.proxy, self.proxy_config, destination_scheme
        )
    
        # Merge the proxy headers. Only done when not using HTTP CONNECT. We
        # have to copy the headers dict so we can safely change it without those
        # changes being reflected in anyone else's copy.
        if not http_tunnel_required:
            headers = headers.copy()
            headers.update(self.proxy_headers)
    
        # Must keep the exception bound to a separate variable or else Python 3
        # complains about UnboundLocalError.
        err = None
    
        # Keep track of whether we cleanly exited the except block. This
        # ensures we do proper cleanup in finally.
        clean_exit = False
    
        # Rewind body position, if needed. Record current position
        # for future rewinds in the event of a redirect/retry.
        body_pos = set_file_position(body, body_pos)
    
        try:
            # Request a connection from the queue.
            timeout_obj = self._get_timeout(timeout)
            conn = self._get_conn(timeout=pool_timeout)
    
            conn.timeout = timeout_obj.connect_timeout
    
            is_new_proxy_conn = self.proxy is not None and not getattr(
                conn, "sock", None
            )
            if is_new_proxy_conn and http_tunnel_required:
                self._prepare_proxy(conn)
    
            # Make the request on the httplib connection object.
>           httplib_response = self._make_request(
                conn,
                method,
                url,
                timeout=timeout_obj,
                body=body,
                headers=headers,
                chunked=chunked,
            )

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py:699: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754a335970>
conn = <urllib3.connection.HTTPSConnection object at 0x7f754a8d0460>
method = 'POST'
url = '/api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf'
timeout = Timeout(connect=None, read=None, total=None), chunked = False
httplib_request_kw = {'body': b'{"from": 0, "size": 0, "aggregations": {"names_and_curies": {"terms": {"script": {"lang": "painless", "inli...p, deflate', 'Accept': '*/*', 'Connection': 'keep-alive', 'Content-Length': '294', 'Content-Type': 'application/json'}}
timeout_obj = Timeout(connect=None, read=None, total=None)

    def _make_request(
        self, conn, method, url, timeout=_Default, chunked=False, **httplib_request_kw
    ):
        """
        Perform a request on a given urllib connection object taken from our
        pool.
    
        :param conn:
            a connection from one of our connection pools
    
        :param timeout:
            Socket timeout in seconds for the request. This can be a
            float or integer, which will set the same timeout value for
            the socket connect and the socket read, or an instance of
            :class:`urllib3.util.Timeout`, which gives you more fine-grained
            control over your timeouts.
        """
        self.num_requests += 1
    
        timeout_obj = self._get_timeout(timeout)
        timeout_obj.start_connect()
        conn.timeout = timeout_obj.connect_timeout
    
        # Trigger any extra validation we need to do.
        try:
>           self._validate_conn(conn)

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py:382: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754a335970>
conn = <urllib3.connection.HTTPSConnection object at 0x7f754a8d0460>

    def _validate_conn(self, conn):
        """
        Called right before a request is made, after the socket is created.
        """
        super(HTTPSConnectionPool, self)._validate_conn(conn)
    
        # Force connect early to allow us to validate the connection.
        if not getattr(conn, "sock", None):  # AppEngine might not have  `.sock`
>           conn.connect()

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py:1010: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connection.HTTPSConnection object at 0x7f754a8d0460>

    def connect(self):
        # Add certificate verification
>       conn = self._new_conn()

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connection.py:353: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connection.HTTPSConnection object at 0x7f754a8d0460>

    def _new_conn(self):
        """Establish a socket connection and set nodelay settings on it.
    
        :return: New socket connection.
        """
        extra_kw = {}
        if self.source_address:
            extra_kw["source_address"] = self.source_address
    
        if self.socket_options:
            extra_kw["socket_options"] = self.socket_options
    
        try:
            conn = connection.create_connection(
                (self._dns_host, self.port), self.timeout, **extra_kw
            )
    
        except SocketTimeout:
            raise ConnectTimeoutError(
                self,
                "Connection to %s timed out. (connect timeout=%s)"
                % (self.host, self.timeout),
            )
    
        except SocketError as e:
>           raise NewConnectionError(
                self, "Failed to establish a new connection: %s" % e
            )
E           urllib3.exceptions.NewConnectionError: <urllib3.connection.HTTPSConnection object at 0x7f754a8d0460>: Failed to establish a new connection: [Errno 110] Connection timed out

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connection.py:181: NewConnectionError

During handling of the above exception, another exception occurred:

self = <requests.adapters.HTTPAdapter object at 0x7f754a335ca0>
request = <PreparedRequest [POST]>, stream = False
timeout = Timeout(connect=None, read=None, total=None), verify = True
cert = None, proxies = OrderedDict()

    def send(self, request, stream=False, timeout=None, verify=True, cert=None, proxies=None):
        """Sends PreparedRequest object. Returns Response object.
    
        :param request: The :class:`PreparedRequest <PreparedRequest>` being sent.
        :param stream: (optional) Whether to stream the request content.
        :param timeout: (optional) How long to wait for the server to send
            data before giving up, as a float, or a :ref:`(connect timeout,
            read timeout) <timeouts>` tuple.
        :type timeout: float or tuple or urllib3 Timeout object
        :param verify: (optional) Either a boolean, in which case it controls whether
            we verify the server's TLS certificate, or a string, in which case it
            must be a path to a CA bundle to use
        :param cert: (optional) Any user-provided SSL certificate to be trusted.
        :param proxies: (optional) The proxies dictionary to apply to the request.
        :rtype: requests.Response
        """
    
        try:
            conn = self.get_connection(request.url, proxies)
        except LocationValueError as e:
            raise InvalidURL(e, request=request)
    
        self.cert_verify(conn, request.url, verify, cert)
        url = self.request_url(request, proxies)
        self.add_headers(request, stream=stream, timeout=timeout, verify=verify, cert=cert, proxies=proxies)
    
        chunked = not (request.body is None or 'Content-Length' in request.headers)
    
        if isinstance(timeout, tuple):
            try:
                connect, read = timeout
                timeout = TimeoutSauce(connect=connect, read=read)
            except ValueError as e:
                # this may raise a string formatting error.
                err = ("Invalid timeout {}. Pass a (connect, read) "
                       "timeout tuple, or a single float to set "
                       "both timeouts to the same value".format(timeout))
                raise ValueError(err)
        elif isinstance(timeout, TimeoutSauce):
            pass
        else:
            timeout = TimeoutSauce(connect=timeout, read=timeout)
    
        try:
            if not chunked:
>               resp = conn.urlopen(
                    method=request.method,
                    url=url,
                    body=request.body,
                    headers=request.headers,
                    redirect=False,
                    assert_same_host=False,
                    preload_content=False,
                    decode_content=False,
                    retries=self.max_retries,
                    timeout=timeout
                )

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/adapters.py:439: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754a335970>
method = 'POST'
url = '/api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf'
body = b'{"from": 0, "size": 0, "aggregations": {"names_and_curies": {"terms": {"script": {"lang": "painless", "inline": "def...'][\'anatomy\'][\'organ\'] != null ) { a = params[\'_source\'][\'anatomy\'][\'organ\'];}} return a;"}, "size": 200}}}}'
headers = {'User-Agent': 'python-requests/2.25.1', 'Accept-Encoding': 'gzip, deflate', 'Accept': '*/*', 'Connection': 'keep-alive', 'Content-Length': '294', 'Content-Type': 'application/json'}
retries = Retry(total=0, connect=None, read=False, redirect=None, status=None)
redirect = False, assert_same_host = False
timeout = Timeout(connect=None, read=None, total=None), pool_timeout = None
release_conn = False, chunked = False, body_pos = None
response_kw = {'decode_content': False, 'preload_content': False}
parsed_url = Url(scheme=None, auth=None, host=None, port=None, path='/api/1/elastic/SPARC_PortalDatasets_dev/_search', query='api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf', fragment=None)
destination_scheme = None, conn = None, release_this_conn = True
http_tunnel_required = False, err = None, clean_exit = False

    def urlopen(
        self,
        method,
        url,
        body=None,
        headers=None,
        retries=None,
        redirect=True,
        assert_same_host=True,
        timeout=_Default,
        pool_timeout=None,
        release_conn=None,
        chunked=False,
        body_pos=None,
        **response_kw
    ):
        """
        Get a connection from the pool and perform an HTTP request. This is the
        lowest level call for making a request, so you'll need to specify all
        the raw details.
    
        .. note::
    
           More commonly, it's appropriate to use a convenience method provided
           by :class:`.RequestMethods`, such as :meth:`request`.
    
        .. note::
    
           `release_conn` will only behave as expected if
           `preload_content=False` because we want to make
           `preload_content=False` the default behaviour someday soon without
           breaking backwards compatibility.
    
        :param method:
            HTTP request method (such as GET, POST, PUT, etc.)
    
        :param url:
            The URL to perform the request on.
    
        :param body:
            Data to send in the request body, either :class:`str`, :class:`bytes`,
            an iterable of :class:`str`/:class:`bytes`, or a file-like object.
    
        :param headers:
            Dictionary of custom headers to send, such as User-Agent,
            If-None-Match, etc. If None, pool headers are used. If provided,
            these headers completely replace any pool-specific headers.
    
        :param retries:
            Configure the number of retries to allow before raising a
            :class:`~urllib3.exceptions.MaxRetryError` exception.
    
            Pass ``None`` to retry until you receive a response. Pass a
            :class:`~urllib3.util.retry.Retry` object for fine-grained control
            over different types of retries.
            Pass an integer number to retry connection errors that many times,
            but no other types of errors. Pass zero to never retry.
    
            If ``False``, then retries are disabled and any exception is raised
            immediately. Also, instead of raising a MaxRetryError on redirects,
            the redirect response will be returned.
    
        :type retries: :class:`~urllib3.util.retry.Retry`, False, or an int.
    
        :param redirect:
            If True, automatically handle redirects (status codes 301, 302,
            303, 307, 308). Each redirect counts as a retry. Disabling retries
            will disable redirect, too.
    
        :param assert_same_host:
            If ``True``, will make sure that the host of the pool requests is
            consistent else will raise HostChangedError. When ``False``, you can
            use the pool on an HTTP proxy and request foreign hosts.
    
        :param timeout:
            If specified, overrides the default timeout for this one
            request. It may be a float (in seconds) or an instance of
            :class:`urllib3.util.Timeout`.
    
        :param pool_timeout:
            If set and the pool is set to block=True, then this method will
            block for ``pool_timeout`` seconds and raise EmptyPoolError if no
            connection is available within the time period.
    
        :param release_conn:
            If False, then the urlopen call will not release the connection
            back into the pool once a response is received (but will release if
            you read the entire contents of the response such as when
            `preload_content=True`). This is useful if you're not preloading
            the response's content immediately. You will need to call
            ``r.release_conn()`` on the response ``r`` to return the connection
            back into the pool. If None, it takes the value of
            ``response_kw.get('preload_content', True)``.
    
        :param chunked:
            If True, urllib3 will send the body using chunked transfer
            encoding. Otherwise, urllib3 will send the body using the standard
            content-length form. Defaults to False.
    
        :param int body_pos:
            Position to seek to in file-like body in the event of a retry or
            redirect. Typically this won't need to be set because urllib3 will
            auto-populate the value when needed.
    
        :param \\**response_kw:
            Additional parameters are passed to
            :meth:`urllib3.response.HTTPResponse.from_httplib`
        """
    
        parsed_url = parse_url(url)
        destination_scheme = parsed_url.scheme
    
        if headers is None:
            headers = self.headers
    
        if not isinstance(retries, Retry):
            retries = Retry.from_int(retries, redirect=redirect, default=self.retries)
    
        if release_conn is None:
            release_conn = response_kw.get("preload_content", True)
    
        # Check host
        if assert_same_host and not self.is_same_host(url):
            raise HostChangedError(self, url, retries)
    
        # Ensure that the URL we're connecting to is properly encoded
        if url.startswith("/"):
            url = six.ensure_str(_encode_target(url))
        else:
            url = six.ensure_str(parsed_url.url)
    
        conn = None
    
        # Track whether `conn` needs to be released before
        # returning/raising/recursing. Update this variable if necessary, and
        # leave `release_conn` constant throughout the function. That way, if
        # the function recurses, the original value of `release_conn` will be
        # passed down into the recursive call, and its value will be respected.
        #
        # See issue #651 [1] for details.
        #
        # [1] <https://github.com/urllib3/urllib3/issues/651>
        release_this_conn = release_conn
    
        http_tunnel_required = connection_requires_http_tunnel(
            self.proxy, self.proxy_config, destination_scheme
        )
    
        # Merge the proxy headers. Only done when not using HTTP CONNECT. We
        # have to copy the headers dict so we can safely change it without those
        # changes being reflected in anyone else's copy.
        if not http_tunnel_required:
            headers = headers.copy()
            headers.update(self.proxy_headers)
    
        # Must keep the exception bound to a separate variable or else Python 3
        # complains about UnboundLocalError.
        err = None
    
        # Keep track of whether we cleanly exited the except block. This
        # ensures we do proper cleanup in finally.
        clean_exit = False
    
        # Rewind body position, if needed. Record current position
        # for future rewinds in the event of a redirect/retry.
        body_pos = set_file_position(body, body_pos)
    
        try:
            # Request a connection from the queue.
            timeout_obj = self._get_timeout(timeout)
            conn = self._get_conn(timeout=pool_timeout)
    
            conn.timeout = timeout_obj.connect_timeout
    
            is_new_proxy_conn = self.proxy is not None and not getattr(
                conn, "sock", None
            )
            if is_new_proxy_conn and http_tunnel_required:
                self._prepare_proxy(conn)
    
            # Make the request on the httplib connection object.
            httplib_response = self._make_request(
                conn,
                method,
                url,
                timeout=timeout_obj,
                body=body,
                headers=headers,
                chunked=chunked,
            )
    
            # If we're going to release the connection in ``finally:``, then
            # the response doesn't need to know about the connection. Otherwise
            # it will also try to release it and we'll have a double-release
            # mess.
            response_conn = conn if not release_conn else None
    
            # Pass method to Response for length checking
            response_kw["request_method"] = method
    
            # Import httplib's response into our own wrapper object
            response = self.ResponseCls.from_httplib(
                httplib_response,
                pool=self,
                connection=response_conn,
                retries=retries,
                **response_kw
            )
    
            # Everything went great!
            clean_exit = True
    
        except EmptyPoolError:
            # Didn't get a connection from the pool, no need to clean up
            clean_exit = True
            release_this_conn = False
            raise
    
        except (
            TimeoutError,
            HTTPException,
            SocketError,
            ProtocolError,
            BaseSSLError,
            SSLError,
            CertificateError,
        ) as e:
            # Discard the connection for these exceptions. It will be
            # replaced during the next _get_conn() call.
            clean_exit = False
            if isinstance(e, (BaseSSLError, CertificateError)):
                e = SSLError(e)
            elif isinstance(e, (SocketError, NewConnectionError)) and self.proxy:
                e = ProxyError("Cannot connect to proxy.", e)
            elif isinstance(e, (SocketError, HTTPException)):
                e = ProtocolError("Connection aborted.", e)
    
>           retries = retries.increment(
                method, url, error=e, _pool=self, _stacktrace=sys.exc_info()[2]
            )

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py:755: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = Retry(total=0, connect=None, read=False, redirect=None, status=None)
method = 'POST'
url = '/api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf'
response = None
error = NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7f754a8d0460>: Failed to establish a new connection: [Errno 110] Connection timed out')
_pool = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754a335970>
_stacktrace = <traceback object at 0x7f754a2ec380>

    def increment(
        self,
        method=None,
        url=None,
        response=None,
        error=None,
        _pool=None,
        _stacktrace=None,
    ):
        """Return a new Retry object with incremented retry counters.
    
        :param response: A response object, or None, if the server did not
            return a response.
        :type response: :class:`~urllib3.response.HTTPResponse`
        :param Exception error: An error encountered during the request, or
            None if the response was received successfully.
    
        :return: A new ``Retry`` object.
        """
        if self.total is False and error:
            # Disabled, indicate to re-raise the error.
            raise six.reraise(type(error), error, _stacktrace)
    
        total = self.total
        if total is not None:
            total -= 1
    
        connect = self.connect
        read = self.read
        redirect = self.redirect
        status_count = self.status
        other = self.other
        cause = "unknown"
        status = None
        redirect_location = None
    
        if error and self._is_connection_error(error):
            # Connect retry?
            if connect is False:
                raise six.reraise(type(error), error, _stacktrace)
            elif connect is not None:
                connect -= 1
    
        elif error and self._is_read_error(error):
            # Read retry?
            if read is False or not self._is_method_retryable(method):
                raise six.reraise(type(error), error, _stacktrace)
            elif read is not None:
                read -= 1
    
        elif error:
            # Other retry?
            if other is not None:
                other -= 1
    
        elif response and response.get_redirect_location():
            # Redirect retry?
            if redirect is not None:
                redirect -= 1
            cause = "too many redirects"
            redirect_location = response.get_redirect_location()
            status = response.status
    
        else:
            # Incrementing because of a server error like a 500 in
            # status_forcelist and the given method is in the allowed_methods
            cause = ResponseError.GENERIC_ERROR
            if response and response.status:
                if status_count is not None:
                    status_count -= 1
                cause = ResponseError.SPECIFIC_ERROR.format(status_code=response.status)
                status = response.status
    
        history = self.history + (
            RequestHistory(method, url, error, status, redirect_location),
        )
    
        new_retry = self.new(
            total=total,
            connect=connect,
            read=read,
            redirect=redirect,
            status=status_count,
            other=other,
            history=history,
        )
    
        if new_retry.is_exhausted():
>           raise MaxRetryError(_pool, url, error or ResponseError(cause))
E           urllib3.exceptions.MaxRetryError: HTTPSConnectionPool(host='scicrunch.org', port=443): Max retries exceeded with url: /api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7f754a8d0460>: Failed to establish a new connection: [Errno 110] Connection timed out'))

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/util/retry.py:574: MaxRetryError

During handling of the above exception, another exception occurred:

client = <FlaskClient <Flask 'app.main'>>

    def test_getting_curies(client):
        # Test if we get a shorter list of uberons with species specified
>       r = client.get('/get-organ-curies/')

tests/test_scicrunch.py:467: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/werkzeug/test.py:1029: in get
    return self.open(*args, **kw)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/testing.py:222: in open
    return Client.open(
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/werkzeug/test.py:993: in open
    response = self.run_wsgi_app(environ.copy(), buffered=buffered)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/werkzeug/test.py:884: in run_wsgi_app
    rv = run_wsgi_app(self.application, environ, buffered=buffered)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/werkzeug/test.py:1119: in run_wsgi_app
    app_rv = app(environ, start_response)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:2463: in __call__
    return self.wsgi_app(environ, start_response)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:2449: in wsgi_app
    response = self.handle_exception(e)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask_cors/extension.py:161: in wrapped_function
    return cors_after_request(app.make_response(f(*args, **kwargs)))
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1866: in handle_exception
    reraise(exc_type, exc_value, tb)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/_compat.py:39: in reraise
    raise value
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:2446: in wsgi_app
    response = self.full_dispatch_request()
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1951: in full_dispatch_request
    rv = self.handle_user_exception(e)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask_cors/extension.py:161: in wrapped_function
    return cors_after_request(app.make_response(f(*args, **kwargs)))
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1820: in handle_user_exception
    reraise(exc_type, exc_value, tb)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/_compat.py:39: in reraise
    raise value
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1949: in full_dispatch_request
    rv = self.dispatch_request()
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1935: in dispatch_request
    return self.view_functions[rule.endpoint](**req.view_args)
app/main.py:1319: in get_available_uberonids
    response = requests.post(
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/api.py:119: in post
    return request('post', url, data=data, json=json, **kwargs)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/api.py:61: in request
    return session.request(method=method, url=url, **kwargs)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/sessions.py:542: in request
    resp = self.send(prep, **send_kwargs)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/sessions.py:655: in send
    r = adapter.send(request, **kwargs)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <requests.adapters.HTTPAdapter object at 0x7f754a335ca0>
request = <PreparedRequest [POST]>, stream = False
timeout = Timeout(connect=None, read=None, total=None), verify = True
cert = None, proxies = OrderedDict()

    def send(self, request, stream=False, timeout=None, verify=True, cert=None, proxies=None):
        """Sends PreparedRequest object. Returns Response object.
    
        :param request: The :class:`PreparedRequest <PreparedRequest>` being sent.
        :param stream: (optional) Whether to stream the request content.
        :param timeout: (optional) How long to wait for the server to send
            data before giving up, as a float, or a :ref:`(connect timeout,
            read timeout) <timeouts>` tuple.
        :type timeout: float or tuple or urllib3 Timeout object
        :param verify: (optional) Either a boolean, in which case it controls whether
            we verify the server's TLS certificate, or a string, in which case it
            must be a path to a CA bundle to use
        :param cert: (optional) Any user-provided SSL certificate to be trusted.
        :param proxies: (optional) The proxies dictionary to apply to the request.
        :rtype: requests.Response
        """
    
        try:
            conn = self.get_connection(request.url, proxies)
        except LocationValueError as e:
            raise InvalidURL(e, request=request)
    
        self.cert_verify(conn, request.url, verify, cert)
        url = self.request_url(request, proxies)
        self.add_headers(request, stream=stream, timeout=timeout, verify=verify, cert=cert, proxies=proxies)
    
        chunked = not (request.body is None or 'Content-Length' in request.headers)
    
        if isinstance(timeout, tuple):
            try:
                connect, read = timeout
                timeout = TimeoutSauce(connect=connect, read=read)
            except ValueError as e:
                # this may raise a string formatting error.
                err = ("Invalid timeout {}. Pass a (connect, read) "
                       "timeout tuple, or a single float to set "
                       "both timeouts to the same value".format(timeout))
                raise ValueError(err)
        elif isinstance(timeout, TimeoutSauce):
            pass
        else:
            timeout = TimeoutSauce(connect=timeout, read=timeout)
    
        try:
            if not chunked:
                resp = conn.urlopen(
                    method=request.method,
                    url=url,
                    body=request.body,
                    headers=request.headers,
                    redirect=False,
                    assert_same_host=False,
                    preload_content=False,
                    decode_content=False,
                    retries=self.max_retries,
                    timeout=timeout
                )
    
            # Send the request.
            else:
                if hasattr(conn, 'proxy_pool'):
                    conn = conn.proxy_pool
    
                low_conn = conn._get_conn(timeout=DEFAULT_POOL_TIMEOUT)
    
                try:
                    low_conn.putrequest(request.method,
                                        url,
                                        skip_accept_encoding=True)
    
                    for header, value in request.headers.items():
                        low_conn.putheader(header, value)
    
                    low_conn.endheaders()
    
                    for i in request.body:
                        low_conn.send(hex(len(i))[2:].encode('utf-8'))
                        low_conn.send(b'\r\n')
                        low_conn.send(i)
                        low_conn.send(b'\r\n')
                    low_conn.send(b'0\r\n\r\n')
    
                    # Receive the response from the server
                    try:
                        # For Python 2.7, use buffering of HTTP responses
                        r = low_conn.getresponse(buffering=True)
                    except TypeError:
                        # For compatibility with Python 3.3+
                        r = low_conn.getresponse()
    
                    resp = HTTPResponse.from_httplib(
                        r,
                        pool=conn,
                        connection=low_conn,
                        preload_content=False,
                        decode_content=False
                    )
                except:
                    # If we hit any problems here, clean up the connection.
                    # Then, reraise so that we can handle the actual exception.
                    low_conn.close()
                    raise
    
        except (ProtocolError, socket.error) as err:
            raise ConnectionError(err, request=request)
    
        except MaxRetryError as e:
            if isinstance(e.reason, ConnectTimeoutError):
                # TODO: Remove this in 3.0.0: see #2811
                if not isinstance(e.reason, NewConnectionError):
                    raise ConnectTimeout(e, request=request)
    
            if isinstance(e.reason, ResponseError):
                raise RetryError(e, request=request)
    
            if isinstance(e.reason, _ProxyError):
                raise ProxyError(e, request=request)
    
            if isinstance(e.reason, _SSLError):
                # This branch is for urllib3 v1.22 and later.
                raise SSLError(e, request=request)
    
>           raise ConnectionError(e, request=request)
E           requests.exceptions.ConnectionError: HTTPSConnectionPool(host='scicrunch.org', port=443): Max retries exceeded with url: /api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7f754a8d0460>: Failed to establish a new connection: [Errno 110] Connection timed out'))

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/adapters.py:516: ConnectionError
____________________________ test_get_related_terms ____________________________

self = <urllib3.connection.HTTPSConnection object at 0x7f754a6fda30>

    def _new_conn(self):
        """Establish a socket connection and set nodelay settings on it.
    
        :return: New socket connection.
        """
        extra_kw = {}
        if self.source_address:
            extra_kw["source_address"] = self.source_address
    
        if self.socket_options:
            extra_kw["socket_options"] = self.socket_options
    
        try:
>           conn = connection.create_connection(
                (self._dns_host, self.port), self.timeout, **extra_kw
            )

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connection.py:169: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

address = ('scicrunch.org', 443), timeout = None, source_address = None
socket_options = [(6, 1, 1)]

    def create_connection(
        address,
        timeout=socket._GLOBAL_DEFAULT_TIMEOUT,
        source_address=None,
        socket_options=None,
    ):
        """Connect to *address* and return the socket object.
    
        Convenience function.  Connect to *address* (a 2-tuple ``(host,
        port)``) and return the socket object.  Passing the optional
        *timeout* parameter will set the timeout on the socket instance
        before attempting to connect.  If no *timeout* is supplied, the
        global default timeout setting returned by :func:`socket.getdefaulttimeout`
        is used.  If *source_address* is set it must be a tuple of (host, port)
        for the socket to bind as a source address before making the connection.
        An host of '' or port 0 tells the OS to use the default.
        """
    
        host, port = address
        if host.startswith("["):
            host = host.strip("[]")
        err = None
    
        # Using the value from allowed_gai_family() in the context of getaddrinfo lets
        # us select whether to work with IPv4 DNS records, IPv6 records, or both.
        # The original create_connection function always returns all records.
        family = allowed_gai_family()
    
        try:
            host.encode("idna")
        except UnicodeError:
            return six.raise_from(
                LocationParseError(u"'%s', label empty or too long" % host), None
            )
    
        for res in socket.getaddrinfo(host, port, family, socket.SOCK_STREAM):
            af, socktype, proto, canonname, sa = res
            sock = None
            try:
                sock = socket.socket(af, socktype, proto)
    
                # If provided, set socket level options before connecting.
                _set_socket_options(sock, socket_options)
    
                if timeout is not socket._GLOBAL_DEFAULT_TIMEOUT:
                    sock.settimeout(timeout)
                if source_address:
                    sock.bind(source_address)
                sock.connect(sa)
                return sock
    
            except socket.error as e:
                err = e
                if sock is not None:
                    sock.close()
                    sock = None
    
        if err is not None:
>           raise err

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/util/connection.py:96: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

address = ('scicrunch.org', 443), timeout = None, source_address = None
socket_options = [(6, 1, 1)]

    def create_connection(
        address,
        timeout=socket._GLOBAL_DEFAULT_TIMEOUT,
        source_address=None,
        socket_options=None,
    ):
        """Connect to *address* and return the socket object.
    
        Convenience function.  Connect to *address* (a 2-tuple ``(host,
        port)``) and return the socket object.  Passing the optional
        *timeout* parameter will set the timeout on the socket instance
        before attempting to connect.  If no *timeout* is supplied, the
        global default timeout setting returned by :func:`socket.getdefaulttimeout`
        is used.  If *source_address* is set it must be a tuple of (host, port)
        for the socket to bind as a source address before making the connection.
        An host of '' or port 0 tells the OS to use the default.
        """
    
        host, port = address
        if host.startswith("["):
            host = host.strip("[]")
        err = None
    
        # Using the value from allowed_gai_family() in the context of getaddrinfo lets
        # us select whether to work with IPv4 DNS records, IPv6 records, or both.
        # The original create_connection function always returns all records.
        family = allowed_gai_family()
    
        try:
            host.encode("idna")
        except UnicodeError:
            return six.raise_from(
                LocationParseError(u"'%s', label empty or too long" % host), None
            )
    
        for res in socket.getaddrinfo(host, port, family, socket.SOCK_STREAM):
            af, socktype, proto, canonname, sa = res
            sock = None
            try:
                sock = socket.socket(af, socktype, proto)
    
                # If provided, set socket level options before connecting.
                _set_socket_options(sock, socket_options)
    
                if timeout is not socket._GLOBAL_DEFAULT_TIMEOUT:
                    sock.settimeout(timeout)
                if source_address:
                    sock.bind(source_address)
>               sock.connect(sa)
E               TimeoutError: [Errno 110] Connection timed out

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/util/connection.py:86: TimeoutError

During handling of the above exception, another exception occurred:

self = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754a6fdeb0>
method = 'GET'
url = '/api/1/sparc-scigraph/graph/neighbors/UBERON:0002084?direction=OUTGOING&relationshipType=BFO%3A0000050&entail=true&api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf'
body = None
headers = {'User-Agent': 'python-requests/2.25.1', 'Accept-Encoding': 'gzip, deflate', 'Accept': '*/*', 'Connection': 'keep-alive'}
retries = Retry(total=0, connect=None, read=False, redirect=None, status=None)
redirect = False, assert_same_host = False
timeout = Timeout(connect=None, read=None, total=None), pool_timeout = None
release_conn = False, chunked = False, body_pos = None
response_kw = {'decode_content': False, 'preload_content': False}
parsed_url = Url(scheme=None, auth=None, host=None, port=None, path='/api/1/sparc-scigraph/graph/neighbors/UBERON:0002084', query='direction=OUTGOING&relationshipType=BFO%3A0000050&entail=true&api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf', fragment=None)
destination_scheme = None, conn = None, release_this_conn = True
http_tunnel_required = False, err = None, clean_exit = False

    def urlopen(
        self,
        method,
        url,
        body=None,
        headers=None,
        retries=None,
        redirect=True,
        assert_same_host=True,
        timeout=_Default,
        pool_timeout=None,
        release_conn=None,
        chunked=False,
        body_pos=None,
        **response_kw
    ):
        """
        Get a connection from the pool and perform an HTTP request. This is the
        lowest level call for making a request, so you'll need to specify all
        the raw details.
    
        .. note::
    
           More commonly, it's appropriate to use a convenience method provided
           by :class:`.RequestMethods`, such as :meth:`request`.
    
        .. note::
    
           `release_conn` will only behave as expected if
           `preload_content=False` because we want to make
           `preload_content=False` the default behaviour someday soon without
           breaking backwards compatibility.
    
        :param method:
            HTTP request method (such as GET, POST, PUT, etc.)
    
        :param url:
            The URL to perform the request on.
    
        :param body:
            Data to send in the request body, either :class:`str`, :class:`bytes`,
            an iterable of :class:`str`/:class:`bytes`, or a file-like object.
    
        :param headers:
            Dictionary of custom headers to send, such as User-Agent,
            If-None-Match, etc. If None, pool headers are used. If provided,
            these headers completely replace any pool-specific headers.
    
        :param retries:
            Configure the number of retries to allow before raising a
            :class:`~urllib3.exceptions.MaxRetryError` exception.
    
            Pass ``None`` to retry until you receive a response. Pass a
            :class:`~urllib3.util.retry.Retry` object for fine-grained control
            over different types of retries.
            Pass an integer number to retry connection errors that many times,
            but no other types of errors. Pass zero to never retry.
    
            If ``False``, then retries are disabled and any exception is raised
            immediately. Also, instead of raising a MaxRetryError on redirects,
            the redirect response will be returned.
    
        :type retries: :class:`~urllib3.util.retry.Retry`, False, or an int.
    
        :param redirect:
            If True, automatically handle redirects (status codes 301, 302,
            303, 307, 308). Each redirect counts as a retry. Disabling retries
            will disable redirect, too.
    
        :param assert_same_host:
            If ``True``, will make sure that the host of the pool requests is
            consistent else will raise HostChangedError. When ``False``, you can
            use the pool on an HTTP proxy and request foreign hosts.
    
        :param timeout:
            If specified, overrides the default timeout for this one
            request. It may be a float (in seconds) or an instance of
            :class:`urllib3.util.Timeout`.
    
        :param pool_timeout:
            If set and the pool is set to block=True, then this method will
            block for ``pool_timeout`` seconds and raise EmptyPoolError if no
            connection is available within the time period.
    
        :param release_conn:
            If False, then the urlopen call will not release the connection
            back into the pool once a response is received (but will release if
            you read the entire contents of the response such as when
            `preload_content=True`). This is useful if you're not preloading
            the response's content immediately. You will need to call
            ``r.release_conn()`` on the response ``r`` to return the connection
            back into the pool. If None, it takes the value of
            ``response_kw.get('preload_content', True)``.
    
        :param chunked:
            If True, urllib3 will send the body using chunked transfer
            encoding. Otherwise, urllib3 will send the body using the standard
            content-length form. Defaults to False.
    
        :param int body_pos:
            Position to seek to in file-like body in the event of a retry or
            redirect. Typically this won't need to be set because urllib3 will
            auto-populate the value when needed.
    
        :param \\**response_kw:
            Additional parameters are passed to
            :meth:`urllib3.response.HTTPResponse.from_httplib`
        """
    
        parsed_url = parse_url(url)
        destination_scheme = parsed_url.scheme
    
        if headers is None:
            headers = self.headers
    
        if not isinstance(retries, Retry):
            retries = Retry.from_int(retries, redirect=redirect, default=self.retries)
    
        if release_conn is None:
            release_conn = response_kw.get("preload_content", True)
    
        # Check host
        if assert_same_host and not self.is_same_host(url):
            raise HostChangedError(self, url, retries)
    
        # Ensure that the URL we're connecting to is properly encoded
        if url.startswith("/"):
            url = six.ensure_str(_encode_target(url))
        else:
            url = six.ensure_str(parsed_url.url)
    
        conn = None
    
        # Track whether `conn` needs to be released before
        # returning/raising/recursing. Update this variable if necessary, and
        # leave `release_conn` constant throughout the function. That way, if
        # the function recurses, the original value of `release_conn` will be
        # passed down into the recursive call, and its value will be respected.
        #
        # See issue #651 [1] for details.
        #
        # [1] <https://github.com/urllib3/urllib3/issues/651>
        release_this_conn = release_conn
    
        http_tunnel_required = connection_requires_http_tunnel(
            self.proxy, self.proxy_config, destination_scheme
        )
    
        # Merge the proxy headers. Only done when not using HTTP CONNECT. We
        # have to copy the headers dict so we can safely change it without those
        # changes being reflected in anyone else's copy.
        if not http_tunnel_required:
            headers = headers.copy()
            headers.update(self.proxy_headers)
    
        # Must keep the exception bound to a separate variable or else Python 3
        # complains about UnboundLocalError.
        err = None
    
        # Keep track of whether we cleanly exited the except block. This
        # ensures we do proper cleanup in finally.
        clean_exit = False
    
        # Rewind body position, if needed. Record current position
        # for future rewinds in the event of a redirect/retry.
        body_pos = set_file_position(body, body_pos)
    
        try:
            # Request a connection from the queue.
            timeout_obj = self._get_timeout(timeout)
            conn = self._get_conn(timeout=pool_timeout)
    
            conn.timeout = timeout_obj.connect_timeout
    
            is_new_proxy_conn = self.proxy is not None and not getattr(
                conn, "sock", None
            )
            if is_new_proxy_conn and http_tunnel_required:
                self._prepare_proxy(conn)
    
            # Make the request on the httplib connection object.
>           httplib_response = self._make_request(
                conn,
                method,
                url,
                timeout=timeout_obj,
                body=body,
                headers=headers,
                chunked=chunked,
            )

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py:699: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754a6fdeb0>
conn = <urllib3.connection.HTTPSConnection object at 0x7f754a6fda30>
method = 'GET'
url = '/api/1/sparc-scigraph/graph/neighbors/UBERON:0002084?direction=OUTGOING&relationshipType=BFO%3A0000050&entail=true&api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf'
timeout = Timeout(connect=None, read=None, total=None), chunked = False
httplib_request_kw = {'body': None, 'headers': {'User-Agent': 'python-requests/2.25.1', 'Accept-Encoding': 'gzip, deflate', 'Accept': '*/*', 'Connection': 'keep-alive'}}
timeout_obj = Timeout(connect=None, read=None, total=None)

    def _make_request(
        self, conn, method, url, timeout=_Default, chunked=False, **httplib_request_kw
    ):
        """
        Perform a request on a given urllib connection object taken from our
        pool.
    
        :param conn:
            a connection from one of our connection pools
    
        :param timeout:
            Socket timeout in seconds for the request. This can be a
            float or integer, which will set the same timeout value for
            the socket connect and the socket read, or an instance of
            :class:`urllib3.util.Timeout`, which gives you more fine-grained
            control over your timeouts.
        """
        self.num_requests += 1
    
        timeout_obj = self._get_timeout(timeout)
        timeout_obj.start_connect()
        conn.timeout = timeout_obj.connect_timeout
    
        # Trigger any extra validation we need to do.
        try:
>           self._validate_conn(conn)

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py:382: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754a6fdeb0>
conn = <urllib3.connection.HTTPSConnection object at 0x7f754a6fda30>

    def _validate_conn(self, conn):
        """
        Called right before a request is made, after the socket is created.
        """
        super(HTTPSConnectionPool, self)._validate_conn(conn)
    
        # Force connect early to allow us to validate the connection.
        if not getattr(conn, "sock", None):  # AppEngine might not have  `.sock`
>           conn.connect()

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py:1010: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connection.HTTPSConnection object at 0x7f754a6fda30>

    def connect(self):
        # Add certificate verification
>       conn = self._new_conn()

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connection.py:353: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connection.HTTPSConnection object at 0x7f754a6fda30>

    def _new_conn(self):
        """Establish a socket connection and set nodelay settings on it.
    
        :return: New socket connection.
        """
        extra_kw = {}
        if self.source_address:
            extra_kw["source_address"] = self.source_address
    
        if self.socket_options:
            extra_kw["socket_options"] = self.socket_options
    
        try:
            conn = connection.create_connection(
                (self._dns_host, self.port), self.timeout, **extra_kw
            )
    
        except SocketTimeout:
            raise ConnectTimeoutError(
                self,
                "Connection to %s timed out. (connect timeout=%s)"
                % (self.host, self.timeout),
            )
    
        except SocketError as e:
>           raise NewConnectionError(
                self, "Failed to establish a new connection: %s" % e
            )
E           urllib3.exceptions.NewConnectionError: <urllib3.connection.HTTPSConnection object at 0x7f754a6fda30>: Failed to establish a new connection: [Errno 110] Connection timed out

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connection.py:181: NewConnectionError

During handling of the above exception, another exception occurred:

self = <requests.adapters.HTTPAdapter object at 0x7f754a5264c0>
request = <PreparedRequest [GET]>, stream = False
timeout = Timeout(connect=None, read=None, total=None), verify = True
cert = None, proxies = OrderedDict()

    def send(self, request, stream=False, timeout=None, verify=True, cert=None, proxies=None):
        """Sends PreparedRequest object. Returns Response object.
    
        :param request: The :class:`PreparedRequest <PreparedRequest>` being sent.
        :param stream: (optional) Whether to stream the request content.
        :param timeout: (optional) How long to wait for the server to send
            data before giving up, as a float, or a :ref:`(connect timeout,
            read timeout) <timeouts>` tuple.
        :type timeout: float or tuple or urllib3 Timeout object
        :param verify: (optional) Either a boolean, in which case it controls whether
            we verify the server's TLS certificate, or a string, in which case it
            must be a path to a CA bundle to use
        :param cert: (optional) Any user-provided SSL certificate to be trusted.
        :param proxies: (optional) The proxies dictionary to apply to the request.
        :rtype: requests.Response
        """
    
        try:
            conn = self.get_connection(request.url, proxies)
        except LocationValueError as e:
            raise InvalidURL(e, request=request)
    
        self.cert_verify(conn, request.url, verify, cert)
        url = self.request_url(request, proxies)
        self.add_headers(request, stream=stream, timeout=timeout, verify=verify, cert=cert, proxies=proxies)
    
        chunked = not (request.body is None or 'Content-Length' in request.headers)
    
        if isinstance(timeout, tuple):
            try:
                connect, read = timeout
                timeout = TimeoutSauce(connect=connect, read=read)
            except ValueError as e:
                # this may raise a string formatting error.
                err = ("Invalid timeout {}. Pass a (connect, read) "
                       "timeout tuple, or a single float to set "
                       "both timeouts to the same value".format(timeout))
                raise ValueError(err)
        elif isinstance(timeout, TimeoutSauce):
            pass
        else:
            timeout = TimeoutSauce(connect=timeout, read=timeout)
    
        try:
            if not chunked:
>               resp = conn.urlopen(
                    method=request.method,
                    url=url,
                    body=request.body,
                    headers=request.headers,
                    redirect=False,
                    assert_same_host=False,
                    preload_content=False,
                    decode_content=False,
                    retries=self.max_retries,
                    timeout=timeout
                )

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/adapters.py:439: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754a6fdeb0>
method = 'GET'
url = '/api/1/sparc-scigraph/graph/neighbors/UBERON:0002084?direction=OUTGOING&relationshipType=BFO%3A0000050&entail=true&api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf'
body = None
headers = {'User-Agent': 'python-requests/2.25.1', 'Accept-Encoding': 'gzip, deflate', 'Accept': '*/*', 'Connection': 'keep-alive'}
retries = Retry(total=0, connect=None, read=False, redirect=None, status=None)
redirect = False, assert_same_host = False
timeout = Timeout(connect=None, read=None, total=None), pool_timeout = None
release_conn = False, chunked = False, body_pos = None
response_kw = {'decode_content': False, 'preload_content': False}
parsed_url = Url(scheme=None, auth=None, host=None, port=None, path='/api/1/sparc-scigraph/graph/neighbors/UBERON:0002084', query='direction=OUTGOING&relationshipType=BFO%3A0000050&entail=true&api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf', fragment=None)
destination_scheme = None, conn = None, release_this_conn = True
http_tunnel_required = False, err = None, clean_exit = False

    def urlopen(
        self,
        method,
        url,
        body=None,
        headers=None,
        retries=None,
        redirect=True,
        assert_same_host=True,
        timeout=_Default,
        pool_timeout=None,
        release_conn=None,
        chunked=False,
        body_pos=None,
        **response_kw
    ):
        """
        Get a connection from the pool and perform an HTTP request. This is the
        lowest level call for making a request, so you'll need to specify all
        the raw details.
    
        .. note::
    
           More commonly, it's appropriate to use a convenience method provided
           by :class:`.RequestMethods`, such as :meth:`request`.
    
        .. note::
    
           `release_conn` will only behave as expected if
           `preload_content=False` because we want to make
           `preload_content=False` the default behaviour someday soon without
           breaking backwards compatibility.
    
        :param method:
            HTTP request method (such as GET, POST, PUT, etc.)
    
        :param url:
            The URL to perform the request on.
    
        :param body:
            Data to send in the request body, either :class:`str`, :class:`bytes`,
            an iterable of :class:`str`/:class:`bytes`, or a file-like object.
    
        :param headers:
            Dictionary of custom headers to send, such as User-Agent,
            If-None-Match, etc. If None, pool headers are used. If provided,
            these headers completely replace any pool-specific headers.
    
        :param retries:
            Configure the number of retries to allow before raising a
            :class:`~urllib3.exceptions.MaxRetryError` exception.
    
            Pass ``None`` to retry until you receive a response. Pass a
            :class:`~urllib3.util.retry.Retry` object for fine-grained control
            over different types of retries.
            Pass an integer number to retry connection errors that many times,
            but no other types of errors. Pass zero to never retry.
    
            If ``False``, then retries are disabled and any exception is raised
            immediately. Also, instead of raising a MaxRetryError on redirects,
            the redirect response will be returned.
    
        :type retries: :class:`~urllib3.util.retry.Retry`, False, or an int.
    
        :param redirect:
            If True, automatically handle redirects (status codes 301, 302,
            303, 307, 308). Each redirect counts as a retry. Disabling retries
            will disable redirect, too.
    
        :param assert_same_host:
            If ``True``, will make sure that the host of the pool requests is
            consistent else will raise HostChangedError. When ``False``, you can
            use the pool on an HTTP proxy and request foreign hosts.
    
        :param timeout:
            If specified, overrides the default timeout for this one
            request. It may be a float (in seconds) or an instance of
            :class:`urllib3.util.Timeout`.
    
        :param pool_timeout:
            If set and the pool is set to block=True, then this method will
            block for ``pool_timeout`` seconds and raise EmptyPoolError if no
            connection is available within the time period.
    
        :param release_conn:
            If False, then the urlopen call will not release the connection
            back into the pool once a response is received (but will release if
            you read the entire contents of the response such as when
            `preload_content=True`). This is useful if you're not preloading
            the response's content immediately. You will need to call
            ``r.release_conn()`` on the response ``r`` to return the connection
            back into the pool. If None, it takes the value of
            ``response_kw.get('preload_content', True)``.
    
        :param chunked:
            If True, urllib3 will send the body using chunked transfer
            encoding. Otherwise, urllib3 will send the body using the standard
            content-length form. Defaults to False.
    
        :param int body_pos:
            Position to seek to in file-like body in the event of a retry or
            redirect. Typically this won't need to be set because urllib3 will
            auto-populate the value when needed.
    
        :param \\**response_kw:
            Additional parameters are passed to
            :meth:`urllib3.response.HTTPResponse.from_httplib`
        """
    
        parsed_url = parse_url(url)
        destination_scheme = parsed_url.scheme
    
        if headers is None:
            headers = self.headers
    
        if not isinstance(retries, Retry):
            retries = Retry.from_int(retries, redirect=redirect, default=self.retries)
    
        if release_conn is None:
            release_conn = response_kw.get("preload_content", True)
    
        # Check host
        if assert_same_host and not self.is_same_host(url):
            raise HostChangedError(self, url, retries)
    
        # Ensure that the URL we're connecting to is properly encoded
        if url.startswith("/"):
            url = six.ensure_str(_encode_target(url))
        else:
            url = six.ensure_str(parsed_url.url)
    
        conn = None
    
        # Track whether `conn` needs to be released before
        # returning/raising/recursing. Update this variable if necessary, and
        # leave `release_conn` constant throughout the function. That way, if
        # the function recurses, the original value of `release_conn` will be
        # passed down into the recursive call, and its value will be respected.
        #
        # See issue #651 [1] for details.
        #
        # [1] <https://github.com/urllib3/urllib3/issues/651>
        release_this_conn = release_conn
    
        http_tunnel_required = connection_requires_http_tunnel(
            self.proxy, self.proxy_config, destination_scheme
        )
    
        # Merge the proxy headers. Only done when not using HTTP CONNECT. We
        # have to copy the headers dict so we can safely change it without those
        # changes being reflected in anyone else's copy.
        if not http_tunnel_required:
            headers = headers.copy()
            headers.update(self.proxy_headers)
    
        # Must keep the exception bound to a separate variable or else Python 3
        # complains about UnboundLocalError.
        err = None
    
        # Keep track of whether we cleanly exited the except block. This
        # ensures we do proper cleanup in finally.
        clean_exit = False
    
        # Rewind body position, if needed. Record current position
        # for future rewinds in the event of a redirect/retry.
        body_pos = set_file_position(body, body_pos)
    
        try:
            # Request a connection from the queue.
            timeout_obj = self._get_timeout(timeout)
            conn = self._get_conn(timeout=pool_timeout)
    
            conn.timeout = timeout_obj.connect_timeout
    
            is_new_proxy_conn = self.proxy is not None and not getattr(
                conn, "sock", None
            )
            if is_new_proxy_conn and http_tunnel_required:
                self._prepare_proxy(conn)
    
            # Make the request on the httplib connection object.
            httplib_response = self._make_request(
                conn,
                method,
                url,
                timeout=timeout_obj,
                body=body,
                headers=headers,
                chunked=chunked,
            )
    
            # If we're going to release the connection in ``finally:``, then
            # the response doesn't need to know about the connection. Otherwise
            # it will also try to release it and we'll have a double-release
            # mess.
            response_conn = conn if not release_conn else None
    
            # Pass method to Response for length checking
            response_kw["request_method"] = method
    
            # Import httplib's response into our own wrapper object
            response = self.ResponseCls.from_httplib(
                httplib_response,
                pool=self,
                connection=response_conn,
                retries=retries,
                **response_kw
            )
    
            # Everything went great!
            clean_exit = True
    
        except EmptyPoolError:
            # Didn't get a connection from the pool, no need to clean up
            clean_exit = True
            release_this_conn = False
            raise
    
        except (
            TimeoutError,
            HTTPException,
            SocketError,
            ProtocolError,
            BaseSSLError,
            SSLError,
            CertificateError,
        ) as e:
            # Discard the connection for these exceptions. It will be
            # replaced during the next _get_conn() call.
            clean_exit = False
            if isinstance(e, (BaseSSLError, CertificateError)):
                e = SSLError(e)
            elif isinstance(e, (SocketError, NewConnectionError)) and self.proxy:
                e = ProxyError("Cannot connect to proxy.", e)
            elif isinstance(e, (SocketError, HTTPException)):
                e = ProtocolError("Connection aborted.", e)
    
>           retries = retries.increment(
                method, url, error=e, _pool=self, _stacktrace=sys.exc_info()[2]
            )

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py:755: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = Retry(total=0, connect=None, read=False, redirect=None, status=None)
method = 'GET'
url = '/api/1/sparc-scigraph/graph/neighbors/UBERON:0002084?direction=OUTGOING&relationshipType=BFO%3A0000050&entail=true&api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf'
response = None
error = NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7f754a6fda30>: Failed to establish a new connection: [Errno 110] Connection timed out')
_pool = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754a6fdeb0>
_stacktrace = <traceback object at 0x7f754a30f5c0>

    def increment(
        self,
        method=None,
        url=None,
        response=None,
        error=None,
        _pool=None,
        _stacktrace=None,
    ):
        """Return a new Retry object with incremented retry counters.
    
        :param response: A response object, or None, if the server did not
            return a response.
        :type response: :class:`~urllib3.response.HTTPResponse`
        :param Exception error: An error encountered during the request, or
            None if the response was received successfully.
    
        :return: A new ``Retry`` object.
        """
        if self.total is False and error:
            # Disabled, indicate to re-raise the error.
            raise six.reraise(type(error), error, _stacktrace)
    
        total = self.total
        if total is not None:
            total -= 1
    
        connect = self.connect
        read = self.read
        redirect = self.redirect
        status_count = self.status
        other = self.other
        cause = "unknown"
        status = None
        redirect_location = None
    
        if error and self._is_connection_error(error):
            # Connect retry?
            if connect is False:
                raise six.reraise(type(error), error, _stacktrace)
            elif connect is not None:
                connect -= 1
    
        elif error and self._is_read_error(error):
            # Read retry?
            if read is False or not self._is_method_retryable(method):
                raise six.reraise(type(error), error, _stacktrace)
            elif read is not None:
                read -= 1
    
        elif error:
            # Other retry?
            if other is not None:
                other -= 1
    
        elif response and response.get_redirect_location():
            # Redirect retry?
            if redirect is not None:
                redirect -= 1
            cause = "too many redirects"
            redirect_location = response.get_redirect_location()
            status = response.status
    
        else:
            # Incrementing because of a server error like a 500 in
            # status_forcelist and the given method is in the allowed_methods
            cause = ResponseError.GENERIC_ERROR
            if response and response.status:
                if status_count is not None:
                    status_count -= 1
                cause = ResponseError.SPECIFIC_ERROR.format(status_code=response.status)
                status = response.status
    
        history = self.history + (
            RequestHistory(method, url, error, status, redirect_location),
        )
    
        new_retry = self.new(
            total=total,
            connect=connect,
            read=read,
            redirect=redirect,
            status=status_count,
            other=other,
            history=history,
        )
    
        if new_retry.is_exhausted():
>           raise MaxRetryError(_pool, url, error or ResponseError(cause))
E           urllib3.exceptions.MaxRetryError: HTTPSConnectionPool(host='scicrunch.org', port=443): Max retries exceeded with url: /api/1/sparc-scigraph/graph/neighbors/UBERON:0002084?direction=OUTGOING&relationshipType=BFO%3A0000050&entail=true&api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7f754a6fda30>: Failed to establish a new connection: [Errno 110] Connection timed out'))

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/util/retry.py:574: MaxRetryError

During handling of the above exception, another exception occurred:

client = <FlaskClient <Flask 'app.main'>>

    def test_get_related_terms(client):
        # Test if we can get the uberon term of heart using the uberon term
        # of left ventricle
>       r = client.get('/get-related-terms/UBERON:0002084')

tests/test_scicrunch.py:484: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/werkzeug/test.py:1029: in get
    return self.open(*args, **kw)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/testing.py:222: in open
    return Client.open(
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/werkzeug/test.py:993: in open
    response = self.run_wsgi_app(environ.copy(), buffered=buffered)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/werkzeug/test.py:884: in run_wsgi_app
    rv = run_wsgi_app(self.application, environ, buffered=buffered)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/werkzeug/test.py:1119: in run_wsgi_app
    app_rv = app(environ, start_response)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:2463: in __call__
    return self.wsgi_app(environ, start_response)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:2449: in wsgi_app
    response = self.handle_exception(e)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask_cors/extension.py:161: in wrapped_function
    return cors_after_request(app.make_response(f(*args, **kwargs)))
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1866: in handle_exception
    reraise(exc_type, exc_value, tb)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/_compat.py:39: in reraise
    raise value
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:2446: in wsgi_app
    response = self.full_dispatch_request()
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1951: in full_dispatch_request
    rv = self.handle_user_exception(e)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask_cors/extension.py:161: in wrapped_function
    return cors_after_request(app.make_response(f(*args, **kwargs)))
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1820: in handle_user_exception
    reraise(exc_type, exc_value, tb)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/_compat.py:39: in reraise
    raise value
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1949: in full_dispatch_request
    rv = self.dispatch_request()
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1935: in dispatch_request
    return self.view_functions[rule.endpoint](**req.view_args)
app/main.py:1344: in get_related_terms
    response = requests.get(
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/api.py:76: in get
    return request('get', url, params=params, **kwargs)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/api.py:61: in request
    return session.request(method=method, url=url, **kwargs)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/sessions.py:542: in request
    resp = self.send(prep, **send_kwargs)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/sessions.py:655: in send
    r = adapter.send(request, **kwargs)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <requests.adapters.HTTPAdapter object at 0x7f754a5264c0>
request = <PreparedRequest [GET]>, stream = False
timeout = Timeout(connect=None, read=None, total=None), verify = True
cert = None, proxies = OrderedDict()

    def send(self, request, stream=False, timeout=None, verify=True, cert=None, proxies=None):
        """Sends PreparedRequest object. Returns Response object.
    
        :param request: The :class:`PreparedRequest <PreparedRequest>` being sent.
        :param stream: (optional) Whether to stream the request content.
        :param timeout: (optional) How long to wait for the server to send
            data before giving up, as a float, or a :ref:`(connect timeout,
            read timeout) <timeouts>` tuple.
        :type timeout: float or tuple or urllib3 Timeout object
        :param verify: (optional) Either a boolean, in which case it controls whether
            we verify the server's TLS certificate, or a string, in which case it
            must be a path to a CA bundle to use
        :param cert: (optional) Any user-provided SSL certificate to be trusted.
        :param proxies: (optional) The proxies dictionary to apply to the request.
        :rtype: requests.Response
        """
    
        try:
            conn = self.get_connection(request.url, proxies)
        except LocationValueError as e:
            raise InvalidURL(e, request=request)
    
        self.cert_verify(conn, request.url, verify, cert)
        url = self.request_url(request, proxies)
        self.add_headers(request, stream=stream, timeout=timeout, verify=verify, cert=cert, proxies=proxies)
    
        chunked = not (request.body is None or 'Content-Length' in request.headers)
    
        if isinstance(timeout, tuple):
            try:
                connect, read = timeout
                timeout = TimeoutSauce(connect=connect, read=read)
            except ValueError as e:
                # this may raise a string formatting error.
                err = ("Invalid timeout {}. Pass a (connect, read) "
                       "timeout tuple, or a single float to set "
                       "both timeouts to the same value".format(timeout))
                raise ValueError(err)
        elif isinstance(timeout, TimeoutSauce):
            pass
        else:
            timeout = TimeoutSauce(connect=timeout, read=timeout)
    
        try:
            if not chunked:
                resp = conn.urlopen(
                    method=request.method,
                    url=url,
                    body=request.body,
                    headers=request.headers,
                    redirect=False,
                    assert_same_host=False,
                    preload_content=False,
                    decode_content=False,
                    retries=self.max_retries,
                    timeout=timeout
                )
    
            # Send the request.
            else:
                if hasattr(conn, 'proxy_pool'):
                    conn = conn.proxy_pool
    
                low_conn = conn._get_conn(timeout=DEFAULT_POOL_TIMEOUT)
    
                try:
                    low_conn.putrequest(request.method,
                                        url,
                                        skip_accept_encoding=True)
    
                    for header, value in request.headers.items():
                        low_conn.putheader(header, value)
    
                    low_conn.endheaders()
    
                    for i in request.body:
                        low_conn.send(hex(len(i))[2:].encode('utf-8'))
                        low_conn.send(b'\r\n')
                        low_conn.send(i)
                        low_conn.send(b'\r\n')
                    low_conn.send(b'0\r\n\r\n')
    
                    # Receive the response from the server
                    try:
                        # For Python 2.7, use buffering of HTTP responses
                        r = low_conn.getresponse(buffering=True)
                    except TypeError:
                        # For compatibility with Python 3.3+
                        r = low_conn.getresponse()
    
                    resp = HTTPResponse.from_httplib(
                        r,
                        pool=conn,
                        connection=low_conn,
                        preload_content=False,
                        decode_content=False
                    )
                except:
                    # If we hit any problems here, clean up the connection.
                    # Then, reraise so that we can handle the actual exception.
                    low_conn.close()
                    raise
    
        except (ProtocolError, socket.error) as err:
            raise ConnectionError(err, request=request)
    
        except MaxRetryError as e:
            if isinstance(e.reason, ConnectTimeoutError):
                # TODO: Remove this in 3.0.0: see #2811
                if not isinstance(e.reason, NewConnectionError):
                    raise ConnectTimeout(e, request=request)
    
            if isinstance(e.reason, ResponseError):
                raise RetryError(e, request=request)
    
            if isinstance(e.reason, _ProxyError):
                raise ProxyError(e, request=request)
    
            if isinstance(e.reason, _SSLError):
                # This branch is for urllib3 v1.22 and later.
                raise SSLError(e, request=request)
    
>           raise ConnectionError(e, request=request)
E           requests.exceptions.ConnectionError: HTTPSConnectionPool(host='scicrunch.org', port=443): Max retries exceeded with url: /api/1/sparc-scigraph/graph/neighbors/UBERON:0002084?direction=OUTGOING&relationshipType=BFO%3A0000050&entail=true&api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7f754a6fda30>: Failed to establish a new connection: [Errno 110] Connection timed out'))

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/adapters.py:516: ConnectionError
_____________________________ test_scaffold_files ______________________________

self = <urllib3.connection.HTTPSConnection object at 0x7f754a370400>

    def _new_conn(self):
        """Establish a socket connection and set nodelay settings on it.
    
        :return: New socket connection.
        """
        extra_kw = {}
        if self.source_address:
            extra_kw["source_address"] = self.source_address
    
        if self.socket_options:
            extra_kw["socket_options"] = self.socket_options
    
        try:
>           conn = connection.create_connection(
                (self._dns_host, self.port), self.timeout, **extra_kw
            )

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connection.py:169: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

address = ('scicrunch.org', 443), timeout = None, source_address = None
socket_options = [(6, 1, 1)]

    def create_connection(
        address,
        timeout=socket._GLOBAL_DEFAULT_TIMEOUT,
        source_address=None,
        socket_options=None,
    ):
        """Connect to *address* and return the socket object.
    
        Convenience function.  Connect to *address* (a 2-tuple ``(host,
        port)``) and return the socket object.  Passing the optional
        *timeout* parameter will set the timeout on the socket instance
        before attempting to connect.  If no *timeout* is supplied, the
        global default timeout setting returned by :func:`socket.getdefaulttimeout`
        is used.  If *source_address* is set it must be a tuple of (host, port)
        for the socket to bind as a source address before making the connection.
        An host of '' or port 0 tells the OS to use the default.
        """
    
        host, port = address
        if host.startswith("["):
            host = host.strip("[]")
        err = None
    
        # Using the value from allowed_gai_family() in the context of getaddrinfo lets
        # us select whether to work with IPv4 DNS records, IPv6 records, or both.
        # The original create_connection function always returns all records.
        family = allowed_gai_family()
    
        try:
            host.encode("idna")
        except UnicodeError:
            return six.raise_from(
                LocationParseError(u"'%s', label empty or too long" % host), None
            )
    
        for res in socket.getaddrinfo(host, port, family, socket.SOCK_STREAM):
            af, socktype, proto, canonname, sa = res
            sock = None
            try:
                sock = socket.socket(af, socktype, proto)
    
                # If provided, set socket level options before connecting.
                _set_socket_options(sock, socket_options)
    
                if timeout is not socket._GLOBAL_DEFAULT_TIMEOUT:
                    sock.settimeout(timeout)
                if source_address:
                    sock.bind(source_address)
                sock.connect(sa)
                return sock
    
            except socket.error as e:
                err = e
                if sock is not None:
                    sock.close()
                    sock = None
    
        if err is not None:
>           raise err

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/util/connection.py:96: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

address = ('scicrunch.org', 443), timeout = None, source_address = None
socket_options = [(6, 1, 1)]

    def create_connection(
        address,
        timeout=socket._GLOBAL_DEFAULT_TIMEOUT,
        source_address=None,
        socket_options=None,
    ):
        """Connect to *address* and return the socket object.
    
        Convenience function.  Connect to *address* (a 2-tuple ``(host,
        port)``) and return the socket object.  Passing the optional
        *timeout* parameter will set the timeout on the socket instance
        before attempting to connect.  If no *timeout* is supplied, the
        global default timeout setting returned by :func:`socket.getdefaulttimeout`
        is used.  If *source_address* is set it must be a tuple of (host, port)
        for the socket to bind as a source address before making the connection.
        An host of '' or port 0 tells the OS to use the default.
        """
    
        host, port = address
        if host.startswith("["):
            host = host.strip("[]")
        err = None
    
        # Using the value from allowed_gai_family() in the context of getaddrinfo lets
        # us select whether to work with IPv4 DNS records, IPv6 records, or both.
        # The original create_connection function always returns all records.
        family = allowed_gai_family()
    
        try:
            host.encode("idna")
        except UnicodeError:
            return six.raise_from(
                LocationParseError(u"'%s', label empty or too long" % host), None
            )
    
        for res in socket.getaddrinfo(host, port, family, socket.SOCK_STREAM):
            af, socktype, proto, canonname, sa = res
            sock = None
            try:
                sock = socket.socket(af, socktype, proto)
    
                # If provided, set socket level options before connecting.
                _set_socket_options(sock, socket_options)
    
                if timeout is not socket._GLOBAL_DEFAULT_TIMEOUT:
                    sock.settimeout(timeout)
                if source_address:
                    sock.bind(source_address)
>               sock.connect(sa)
E               TimeoutError: [Errno 110] Connection timed out

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/util/connection.py:86: TimeoutError

During handling of the above exception, another exception occurred:

self = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754a2c70a0>
method = 'POST'
url = '/api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf'
body = b'{"size": "30", "from": 0}'
headers = {'User-Agent': 'python-requests/2.25.1', 'Accept-Encoding': 'gzip, deflate', 'Accept': '*/*', 'Connection': 'keep-alive', 'Content-Length': '25', 'Content-Type': 'application/json'}
retries = Retry(total=0, connect=None, read=False, redirect=None, status=None)
redirect = False, assert_same_host = False
timeout = Timeout(connect=None, read=None, total=None), pool_timeout = None
release_conn = False, chunked = False, body_pos = None
response_kw = {'decode_content': False, 'preload_content': False}
parsed_url = Url(scheme=None, auth=None, host=None, port=None, path='/api/1/elastic/SPARC_PortalDatasets_dev/_search', query='api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf', fragment=None)
destination_scheme = None, conn = None, release_this_conn = True
http_tunnel_required = False, err = None, clean_exit = False

    def urlopen(
        self,
        method,
        url,
        body=None,
        headers=None,
        retries=None,
        redirect=True,
        assert_same_host=True,
        timeout=_Default,
        pool_timeout=None,
        release_conn=None,
        chunked=False,
        body_pos=None,
        **response_kw
    ):
        """
        Get a connection from the pool and perform an HTTP request. This is the
        lowest level call for making a request, so you'll need to specify all
        the raw details.
    
        .. note::
    
           More commonly, it's appropriate to use a convenience method provided
           by :class:`.RequestMethods`, such as :meth:`request`.
    
        .. note::
    
           `release_conn` will only behave as expected if
           `preload_content=False` because we want to make
           `preload_content=False` the default behaviour someday soon without
           breaking backwards compatibility.
    
        :param method:
            HTTP request method (such as GET, POST, PUT, etc.)
    
        :param url:
            The URL to perform the request on.
    
        :param body:
            Data to send in the request body, either :class:`str`, :class:`bytes`,
            an iterable of :class:`str`/:class:`bytes`, or a file-like object.
    
        :param headers:
            Dictionary of custom headers to send, such as User-Agent,
            If-None-Match, etc. If None, pool headers are used. If provided,
            these headers completely replace any pool-specific headers.
    
        :param retries:
            Configure the number of retries to allow before raising a
            :class:`~urllib3.exceptions.MaxRetryError` exception.
    
            Pass ``None`` to retry until you receive a response. Pass a
            :class:`~urllib3.util.retry.Retry` object for fine-grained control
            over different types of retries.
            Pass an integer number to retry connection errors that many times,
            but no other types of errors. Pass zero to never retry.
    
            If ``False``, then retries are disabled and any exception is raised
            immediately. Also, instead of raising a MaxRetryError on redirects,
            the redirect response will be returned.
    
        :type retries: :class:`~urllib3.util.retry.Retry`, False, or an int.
    
        :param redirect:
            If True, automatically handle redirects (status codes 301, 302,
            303, 307, 308). Each redirect counts as a retry. Disabling retries
            will disable redirect, too.
    
        :param assert_same_host:
            If ``True``, will make sure that the host of the pool requests is
            consistent else will raise HostChangedError. When ``False``, you can
            use the pool on an HTTP proxy and request foreign hosts.
    
        :param timeout:
            If specified, overrides the default timeout for this one
            request. It may be a float (in seconds) or an instance of
            :class:`urllib3.util.Timeout`.
    
        :param pool_timeout:
            If set and the pool is set to block=True, then this method will
            block for ``pool_timeout`` seconds and raise EmptyPoolError if no
            connection is available within the time period.
    
        :param release_conn:
            If False, then the urlopen call will not release the connection
            back into the pool once a response is received (but will release if
            you read the entire contents of the response such as when
            `preload_content=True`). This is useful if you're not preloading
            the response's content immediately. You will need to call
            ``r.release_conn()`` on the response ``r`` to return the connection
            back into the pool. If None, it takes the value of
            ``response_kw.get('preload_content', True)``.
    
        :param chunked:
            If True, urllib3 will send the body using chunked transfer
            encoding. Otherwise, urllib3 will send the body using the standard
            content-length form. Defaults to False.
    
        :param int body_pos:
            Position to seek to in file-like body in the event of a retry or
            redirect. Typically this won't need to be set because urllib3 will
            auto-populate the value when needed.
    
        :param \\**response_kw:
            Additional parameters are passed to
            :meth:`urllib3.response.HTTPResponse.from_httplib`
        """
    
        parsed_url = parse_url(url)
        destination_scheme = parsed_url.scheme
    
        if headers is None:
            headers = self.headers
    
        if not isinstance(retries, Retry):
            retries = Retry.from_int(retries, redirect=redirect, default=self.retries)
    
        if release_conn is None:
            release_conn = response_kw.get("preload_content", True)
    
        # Check host
        if assert_same_host and not self.is_same_host(url):
            raise HostChangedError(self, url, retries)
    
        # Ensure that the URL we're connecting to is properly encoded
        if url.startswith("/"):
            url = six.ensure_str(_encode_target(url))
        else:
            url = six.ensure_str(parsed_url.url)
    
        conn = None
    
        # Track whether `conn` needs to be released before
        # returning/raising/recursing. Update this variable if necessary, and
        # leave `release_conn` constant throughout the function. That way, if
        # the function recurses, the original value of `release_conn` will be
        # passed down into the recursive call, and its value will be respected.
        #
        # See issue #651 [1] for details.
        #
        # [1] <https://github.com/urllib3/urllib3/issues/651>
        release_this_conn = release_conn
    
        http_tunnel_required = connection_requires_http_tunnel(
            self.proxy, self.proxy_config, destination_scheme
        )
    
        # Merge the proxy headers. Only done when not using HTTP CONNECT. We
        # have to copy the headers dict so we can safely change it without those
        # changes being reflected in anyone else's copy.
        if not http_tunnel_required:
            headers = headers.copy()
            headers.update(self.proxy_headers)
    
        # Must keep the exception bound to a separate variable or else Python 3
        # complains about UnboundLocalError.
        err = None
    
        # Keep track of whether we cleanly exited the except block. This
        # ensures we do proper cleanup in finally.
        clean_exit = False
    
        # Rewind body position, if needed. Record current position
        # for future rewinds in the event of a redirect/retry.
        body_pos = set_file_position(body, body_pos)
    
        try:
            # Request a connection from the queue.
            timeout_obj = self._get_timeout(timeout)
            conn = self._get_conn(timeout=pool_timeout)
    
            conn.timeout = timeout_obj.connect_timeout
    
            is_new_proxy_conn = self.proxy is not None and not getattr(
                conn, "sock", None
            )
            if is_new_proxy_conn and http_tunnel_required:
                self._prepare_proxy(conn)
    
            # Make the request on the httplib connection object.
>           httplib_response = self._make_request(
                conn,
                method,
                url,
                timeout=timeout_obj,
                body=body,
                headers=headers,
                chunked=chunked,
            )

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py:699: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754a2c70a0>
conn = <urllib3.connection.HTTPSConnection object at 0x7f754a370400>
method = 'POST'
url = '/api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf'
timeout = Timeout(connect=None, read=None, total=None), chunked = False
httplib_request_kw = {'body': b'{"size": "30", "from": 0}', 'headers': {'User-Agent': 'python-requests/2.25.1', 'Accept-Encoding': 'gzip, deflate', 'Accept': '*/*', 'Connection': 'keep-alive', 'Content-Length': '25', 'Content-Type': 'application/json'}}
timeout_obj = Timeout(connect=None, read=None, total=None)

    def _make_request(
        self, conn, method, url, timeout=_Default, chunked=False, **httplib_request_kw
    ):
        """
        Perform a request on a given urllib connection object taken from our
        pool.
    
        :param conn:
            a connection from one of our connection pools
    
        :param timeout:
            Socket timeout in seconds for the request. This can be a
            float or integer, which will set the same timeout value for
            the socket connect and the socket read, or an instance of
            :class:`urllib3.util.Timeout`, which gives you more fine-grained
            control over your timeouts.
        """
        self.num_requests += 1
    
        timeout_obj = self._get_timeout(timeout)
        timeout_obj.start_connect()
        conn.timeout = timeout_obj.connect_timeout
    
        # Trigger any extra validation we need to do.
        try:
>           self._validate_conn(conn)

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py:382: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754a2c70a0>
conn = <urllib3.connection.HTTPSConnection object at 0x7f754a370400>

    def _validate_conn(self, conn):
        """
        Called right before a request is made, after the socket is created.
        """
        super(HTTPSConnectionPool, self)._validate_conn(conn)
    
        # Force connect early to allow us to validate the connection.
        if not getattr(conn, "sock", None):  # AppEngine might not have  `.sock`
>           conn.connect()

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py:1010: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connection.HTTPSConnection object at 0x7f754a370400>

    def connect(self):
        # Add certificate verification
>       conn = self._new_conn()

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connection.py:353: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connection.HTTPSConnection object at 0x7f754a370400>

    def _new_conn(self):
        """Establish a socket connection and set nodelay settings on it.
    
        :return: New socket connection.
        """
        extra_kw = {}
        if self.source_address:
            extra_kw["source_address"] = self.source_address
    
        if self.socket_options:
            extra_kw["socket_options"] = self.socket_options
    
        try:
            conn = connection.create_connection(
                (self._dns_host, self.port), self.timeout, **extra_kw
            )
    
        except SocketTimeout:
            raise ConnectTimeoutError(
                self,
                "Connection to %s timed out. (connect timeout=%s)"
                % (self.host, self.timeout),
            )
    
        except SocketError as e:
>           raise NewConnectionError(
                self, "Failed to establish a new connection: %s" % e
            )
E           urllib3.exceptions.NewConnectionError: <urllib3.connection.HTTPSConnection object at 0x7f754a370400>: Failed to establish a new connection: [Errno 110] Connection timed out

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connection.py:181: NewConnectionError

During handling of the above exception, another exception occurred:

self = <requests.adapters.HTTPAdapter object at 0x7f754a2c73d0>
request = <PreparedRequest [POST]>, stream = False
timeout = Timeout(connect=None, read=None, total=None), verify = True
cert = None, proxies = OrderedDict()

    def send(self, request, stream=False, timeout=None, verify=True, cert=None, proxies=None):
        """Sends PreparedRequest object. Returns Response object.
    
        :param request: The :class:`PreparedRequest <PreparedRequest>` being sent.
        :param stream: (optional) Whether to stream the request content.
        :param timeout: (optional) How long to wait for the server to send
            data before giving up, as a float, or a :ref:`(connect timeout,
            read timeout) <timeouts>` tuple.
        :type timeout: float or tuple or urllib3 Timeout object
        :param verify: (optional) Either a boolean, in which case it controls whether
            we verify the server's TLS certificate, or a string, in which case it
            must be a path to a CA bundle to use
        :param cert: (optional) Any user-provided SSL certificate to be trusted.
        :param proxies: (optional) The proxies dictionary to apply to the request.
        :rtype: requests.Response
        """
    
        try:
            conn = self.get_connection(request.url, proxies)
        except LocationValueError as e:
            raise InvalidURL(e, request=request)
    
        self.cert_verify(conn, request.url, verify, cert)
        url = self.request_url(request, proxies)
        self.add_headers(request, stream=stream, timeout=timeout, verify=verify, cert=cert, proxies=proxies)
    
        chunked = not (request.body is None or 'Content-Length' in request.headers)
    
        if isinstance(timeout, tuple):
            try:
                connect, read = timeout
                timeout = TimeoutSauce(connect=connect, read=read)
            except ValueError as e:
                # this may raise a string formatting error.
                err = ("Invalid timeout {}. Pass a (connect, read) "
                       "timeout tuple, or a single float to set "
                       "both timeouts to the same value".format(timeout))
                raise ValueError(err)
        elif isinstance(timeout, TimeoutSauce):
            pass
        else:
            timeout = TimeoutSauce(connect=timeout, read=timeout)
    
        try:
            if not chunked:
>               resp = conn.urlopen(
                    method=request.method,
                    url=url,
                    body=request.body,
                    headers=request.headers,
                    redirect=False,
                    assert_same_host=False,
                    preload_content=False,
                    decode_content=False,
                    retries=self.max_retries,
                    timeout=timeout
                )

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/adapters.py:439: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754a2c70a0>
method = 'POST'
url = '/api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf'
body = b'{"size": "30", "from": 0}'
headers = {'User-Agent': 'python-requests/2.25.1', 'Accept-Encoding': 'gzip, deflate', 'Accept': '*/*', 'Connection': 'keep-alive', 'Content-Length': '25', 'Content-Type': 'application/json'}
retries = Retry(total=0, connect=None, read=False, redirect=None, status=None)
redirect = False, assert_same_host = False
timeout = Timeout(connect=None, read=None, total=None), pool_timeout = None
release_conn = False, chunked = False, body_pos = None
response_kw = {'decode_content': False, 'preload_content': False}
parsed_url = Url(scheme=None, auth=None, host=None, port=None, path='/api/1/elastic/SPARC_PortalDatasets_dev/_search', query='api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf', fragment=None)
destination_scheme = None, conn = None, release_this_conn = True
http_tunnel_required = False, err = None, clean_exit = False

    def urlopen(
        self,
        method,
        url,
        body=None,
        headers=None,
        retries=None,
        redirect=True,
        assert_same_host=True,
        timeout=_Default,
        pool_timeout=None,
        release_conn=None,
        chunked=False,
        body_pos=None,
        **response_kw
    ):
        """
        Get a connection from the pool and perform an HTTP request. This is the
        lowest level call for making a request, so you'll need to specify all
        the raw details.
    
        .. note::
    
           More commonly, it's appropriate to use a convenience method provided
           by :class:`.RequestMethods`, such as :meth:`request`.
    
        .. note::
    
           `release_conn` will only behave as expected if
           `preload_content=False` because we want to make
           `preload_content=False` the default behaviour someday soon without
           breaking backwards compatibility.
    
        :param method:
            HTTP request method (such as GET, POST, PUT, etc.)
    
        :param url:
            The URL to perform the request on.
    
        :param body:
            Data to send in the request body, either :class:`str`, :class:`bytes`,
            an iterable of :class:`str`/:class:`bytes`, or a file-like object.
    
        :param headers:
            Dictionary of custom headers to send, such as User-Agent,
            If-None-Match, etc. If None, pool headers are used. If provided,
            these headers completely replace any pool-specific headers.
    
        :param retries:
            Configure the number of retries to allow before raising a
            :class:`~urllib3.exceptions.MaxRetryError` exception.
    
            Pass ``None`` to retry until you receive a response. Pass a
            :class:`~urllib3.util.retry.Retry` object for fine-grained control
            over different types of retries.
            Pass an integer number to retry connection errors that many times,
            but no other types of errors. Pass zero to never retry.
    
            If ``False``, then retries are disabled and any exception is raised
            immediately. Also, instead of raising a MaxRetryError on redirects,
            the redirect response will be returned.
    
        :type retries: :class:`~urllib3.util.retry.Retry`, False, or an int.
    
        :param redirect:
            If True, automatically handle redirects (status codes 301, 302,
            303, 307, 308). Each redirect counts as a retry. Disabling retries
            will disable redirect, too.
    
        :param assert_same_host:
            If ``True``, will make sure that the host of the pool requests is
            consistent else will raise HostChangedError. When ``False``, you can
            use the pool on an HTTP proxy and request foreign hosts.
    
        :param timeout:
            If specified, overrides the default timeout for this one
            request. It may be a float (in seconds) or an instance of
            :class:`urllib3.util.Timeout`.
    
        :param pool_timeout:
            If set and the pool is set to block=True, then this method will
            block for ``pool_timeout`` seconds and raise EmptyPoolError if no
            connection is available within the time period.
    
        :param release_conn:
            If False, then the urlopen call will not release the connection
            back into the pool once a response is received (but will release if
            you read the entire contents of the response such as when
            `preload_content=True`). This is useful if you're not preloading
            the response's content immediately. You will need to call
            ``r.release_conn()`` on the response ``r`` to return the connection
            back into the pool. If None, it takes the value of
            ``response_kw.get('preload_content', True)``.
    
        :param chunked:
            If True, urllib3 will send the body using chunked transfer
            encoding. Otherwise, urllib3 will send the body using the standard
            content-length form. Defaults to False.
    
        :param int body_pos:
            Position to seek to in file-like body in the event of a retry or
            redirect. Typically this won't need to be set because urllib3 will
            auto-populate the value when needed.
    
        :param \\**response_kw:
            Additional parameters are passed to
            :meth:`urllib3.response.HTTPResponse.from_httplib`
        """
    
        parsed_url = parse_url(url)
        destination_scheme = parsed_url.scheme
    
        if headers is None:
            headers = self.headers
    
        if not isinstance(retries, Retry):
            retries = Retry.from_int(retries, redirect=redirect, default=self.retries)
    
        if release_conn is None:
            release_conn = response_kw.get("preload_content", True)
    
        # Check host
        if assert_same_host and not self.is_same_host(url):
            raise HostChangedError(self, url, retries)
    
        # Ensure that the URL we're connecting to is properly encoded
        if url.startswith("/"):
            url = six.ensure_str(_encode_target(url))
        else:
            url = six.ensure_str(parsed_url.url)
    
        conn = None
    
        # Track whether `conn` needs to be released before
        # returning/raising/recursing. Update this variable if necessary, and
        # leave `release_conn` constant throughout the function. That way, if
        # the function recurses, the original value of `release_conn` will be
        # passed down into the recursive call, and its value will be respected.
        #
        # See issue #651 [1] for details.
        #
        # [1] <https://github.com/urllib3/urllib3/issues/651>
        release_this_conn = release_conn
    
        http_tunnel_required = connection_requires_http_tunnel(
            self.proxy, self.proxy_config, destination_scheme
        )
    
        # Merge the proxy headers. Only done when not using HTTP CONNECT. We
        # have to copy the headers dict so we can safely change it without those
        # changes being reflected in anyone else's copy.
        if not http_tunnel_required:
            headers = headers.copy()
            headers.update(self.proxy_headers)
    
        # Must keep the exception bound to a separate variable or else Python 3
        # complains about UnboundLocalError.
        err = None
    
        # Keep track of whether we cleanly exited the except block. This
        # ensures we do proper cleanup in finally.
        clean_exit = False
    
        # Rewind body position, if needed. Record current position
        # for future rewinds in the event of a redirect/retry.
        body_pos = set_file_position(body, body_pos)
    
        try:
            # Request a connection from the queue.
            timeout_obj = self._get_timeout(timeout)
            conn = self._get_conn(timeout=pool_timeout)
    
            conn.timeout = timeout_obj.connect_timeout
    
            is_new_proxy_conn = self.proxy is not None and not getattr(
                conn, "sock", None
            )
            if is_new_proxy_conn and http_tunnel_required:
                self._prepare_proxy(conn)
    
            # Make the request on the httplib connection object.
            httplib_response = self._make_request(
                conn,
                method,
                url,
                timeout=timeout_obj,
                body=body,
                headers=headers,
                chunked=chunked,
            )
    
            # If we're going to release the connection in ``finally:``, then
            # the response doesn't need to know about the connection. Otherwise
            # it will also try to release it and we'll have a double-release
            # mess.
            response_conn = conn if not release_conn else None
    
            # Pass method to Response for length checking
            response_kw["request_method"] = method
    
            # Import httplib's response into our own wrapper object
            response = self.ResponseCls.from_httplib(
                httplib_response,
                pool=self,
                connection=response_conn,
                retries=retries,
                **response_kw
            )
    
            # Everything went great!
            clean_exit = True
    
        except EmptyPoolError:
            # Didn't get a connection from the pool, no need to clean up
            clean_exit = True
            release_this_conn = False
            raise
    
        except (
            TimeoutError,
            HTTPException,
            SocketError,
            ProtocolError,
            BaseSSLError,
            SSLError,
            CertificateError,
        ) as e:
            # Discard the connection for these exceptions. It will be
            # replaced during the next _get_conn() call.
            clean_exit = False
            if isinstance(e, (BaseSSLError, CertificateError)):
                e = SSLError(e)
            elif isinstance(e, (SocketError, NewConnectionError)) and self.proxy:
                e = ProxyError("Cannot connect to proxy.", e)
            elif isinstance(e, (SocketError, HTTPException)):
                e = ProtocolError("Connection aborted.", e)
    
>           retries = retries.increment(
                method, url, error=e, _pool=self, _stacktrace=sys.exc_info()[2]
            )

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py:755: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = Retry(total=0, connect=None, read=False, redirect=None, status=None)
method = 'POST'
url = '/api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf'
response = None
error = NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7f754a370400>: Failed to establish a new connection: [Errno 110] Connection timed out')
_pool = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754a2c70a0>
_stacktrace = <traceback object at 0x7f754a2e5f40>

    def increment(
        self,
        method=None,
        url=None,
        response=None,
        error=None,
        _pool=None,
        _stacktrace=None,
    ):
        """Return a new Retry object with incremented retry counters.
    
        :param response: A response object, or None, if the server did not
            return a response.
        :type response: :class:`~urllib3.response.HTTPResponse`
        :param Exception error: An error encountered during the request, or
            None if the response was received successfully.
    
        :return: A new ``Retry`` object.
        """
        if self.total is False and error:
            # Disabled, indicate to re-raise the error.
            raise six.reraise(type(error), error, _stacktrace)
    
        total = self.total
        if total is not None:
            total -= 1
    
        connect = self.connect
        read = self.read
        redirect = self.redirect
        status_count = self.status
        other = self.other
        cause = "unknown"
        status = None
        redirect_location = None
    
        if error and self._is_connection_error(error):
            # Connect retry?
            if connect is False:
                raise six.reraise(type(error), error, _stacktrace)
            elif connect is not None:
                connect -= 1
    
        elif error and self._is_read_error(error):
            # Read retry?
            if read is False or not self._is_method_retryable(method):
                raise six.reraise(type(error), error, _stacktrace)
            elif read is not None:
                read -= 1
    
        elif error:
            # Other retry?
            if other is not None:
                other -= 1
    
        elif response and response.get_redirect_location():
            # Redirect retry?
            if redirect is not None:
                redirect -= 1
            cause = "too many redirects"
            redirect_location = response.get_redirect_location()
            status = response.status
    
        else:
            # Incrementing because of a server error like a 500 in
            # status_forcelist and the given method is in the allowed_methods
            cause = ResponseError.GENERIC_ERROR
            if response and response.status:
                if status_count is not None:
                    status_count -= 1
                cause = ResponseError.SPECIFIC_ERROR.format(status_code=response.status)
                status = response.status
    
        history = self.history + (
            RequestHistory(method, url, error, status, redirect_location),
        )
    
        new_retry = self.new(
            total=total,
            connect=connect,
            read=read,
            redirect=redirect,
            status=status_count,
            other=other,
            history=history,
        )
    
        if new_retry.is_exhausted():
>           raise MaxRetryError(_pool, url, error or ResponseError(cause))
E           urllib3.exceptions.MaxRetryError: HTTPSConnectionPool(host='scicrunch.org', port=443): Max retries exceeded with url: /api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7f754a370400>: Failed to establish a new connection: [Errno 110] Connection timed out'))

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/util/retry.py:574: MaxRetryError

During handling of the above exception, another exception occurred:

client = <FlaskClient <Flask 'app.main'>>

    def test_scaffold_files(client):
>       r = client.get('/filter-search/?size=30')

tests/test_scicrunch.py:498: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/werkzeug/test.py:1029: in get
    return self.open(*args, **kw)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/testing.py:222: in open
    return Client.open(
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/werkzeug/test.py:993: in open
    response = self.run_wsgi_app(environ.copy(), buffered=buffered)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/werkzeug/test.py:884: in run_wsgi_app
    rv = run_wsgi_app(self.application, environ, buffered=buffered)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/werkzeug/test.py:1119: in run_wsgi_app
    app_rv = app(environ, start_response)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:2463: in __call__
    return self.wsgi_app(environ, start_response)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:2449: in wsgi_app
    response = self.handle_exception(e)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask_cors/extension.py:161: in wrapped_function
    return cors_after_request(app.make_response(f(*args, **kwargs)))
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1866: in handle_exception
    reraise(exc_type, exc_value, tb)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/_compat.py:39: in reraise
    raise value
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:2446: in wsgi_app
    response = self.full_dispatch_request()
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1951: in full_dispatch_request
    rv = self.handle_user_exception(e)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask_cors/extension.py:161: in wrapped_function
    return cors_after_request(app.make_response(f(*args, **kwargs)))
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1820: in handle_user_exception
    reraise(exc_type, exc_value, tb)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/_compat.py:39: in reraise
    raise value
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1949: in full_dispatch_request
    rv = self.dispatch_request()
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1935: in dispatch_request
    return self.view_functions[rule.endpoint](**req.view_args)
app/main.py:707: in filter_search
    response = requests.post(
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/api.py:119: in post
    return request('post', url, data=data, json=json, **kwargs)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/api.py:61: in request
    return session.request(method=method, url=url, **kwargs)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/sessions.py:542: in request
    resp = self.send(prep, **send_kwargs)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/sessions.py:655: in send
    r = adapter.send(request, **kwargs)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <requests.adapters.HTTPAdapter object at 0x7f754a2c73d0>
request = <PreparedRequest [POST]>, stream = False
timeout = Timeout(connect=None, read=None, total=None), verify = True
cert = None, proxies = OrderedDict()

    def send(self, request, stream=False, timeout=None, verify=True, cert=None, proxies=None):
        """Sends PreparedRequest object. Returns Response object.
    
        :param request: The :class:`PreparedRequest <PreparedRequest>` being sent.
        :param stream: (optional) Whether to stream the request content.
        :param timeout: (optional) How long to wait for the server to send
            data before giving up, as a float, or a :ref:`(connect timeout,
            read timeout) <timeouts>` tuple.
        :type timeout: float or tuple or urllib3 Timeout object
        :param verify: (optional) Either a boolean, in which case it controls whether
            we verify the server's TLS certificate, or a string, in which case it
            must be a path to a CA bundle to use
        :param cert: (optional) Any user-provided SSL certificate to be trusted.
        :param proxies: (optional) The proxies dictionary to apply to the request.
        :rtype: requests.Response
        """
    
        try:
            conn = self.get_connection(request.url, proxies)
        except LocationValueError as e:
            raise InvalidURL(e, request=request)
    
        self.cert_verify(conn, request.url, verify, cert)
        url = self.request_url(request, proxies)
        self.add_headers(request, stream=stream, timeout=timeout, verify=verify, cert=cert, proxies=proxies)
    
        chunked = not (request.body is None or 'Content-Length' in request.headers)
    
        if isinstance(timeout, tuple):
            try:
                connect, read = timeout
                timeout = TimeoutSauce(connect=connect, read=read)
            except ValueError as e:
                # this may raise a string formatting error.
                err = ("Invalid timeout {}. Pass a (connect, read) "
                       "timeout tuple, or a single float to set "
                       "both timeouts to the same value".format(timeout))
                raise ValueError(err)
        elif isinstance(timeout, TimeoutSauce):
            pass
        else:
            timeout = TimeoutSauce(connect=timeout, read=timeout)
    
        try:
            if not chunked:
                resp = conn.urlopen(
                    method=request.method,
                    url=url,
                    body=request.body,
                    headers=request.headers,
                    redirect=False,
                    assert_same_host=False,
                    preload_content=False,
                    decode_content=False,
                    retries=self.max_retries,
                    timeout=timeout
                )
    
            # Send the request.
            else:
                if hasattr(conn, 'proxy_pool'):
                    conn = conn.proxy_pool
    
                low_conn = conn._get_conn(timeout=DEFAULT_POOL_TIMEOUT)
    
                try:
                    low_conn.putrequest(request.method,
                                        url,
                                        skip_accept_encoding=True)
    
                    for header, value in request.headers.items():
                        low_conn.putheader(header, value)
    
                    low_conn.endheaders()
    
                    for i in request.body:
                        low_conn.send(hex(len(i))[2:].encode('utf-8'))
                        low_conn.send(b'\r\n')
                        low_conn.send(i)
                        low_conn.send(b'\r\n')
                    low_conn.send(b'0\r\n\r\n')
    
                    # Receive the response from the server
                    try:
                        # For Python 2.7, use buffering of HTTP responses
                        r = low_conn.getresponse(buffering=True)
                    except TypeError:
                        # For compatibility with Python 3.3+
                        r = low_conn.getresponse()
    
                    resp = HTTPResponse.from_httplib(
                        r,
                        pool=conn,
                        connection=low_conn,
                        preload_content=False,
                        decode_content=False
                    )
                except:
                    # If we hit any problems here, clean up the connection.
                    # Then, reraise so that we can handle the actual exception.
                    low_conn.close()
                    raise
    
        except (ProtocolError, socket.error) as err:
            raise ConnectionError(err, request=request)
    
        except MaxRetryError as e:
            if isinstance(e.reason, ConnectTimeoutError):
                # TODO: Remove this in 3.0.0: see #2811
                if not isinstance(e.reason, NewConnectionError):
                    raise ConnectTimeout(e, request=request)
    
            if isinstance(e.reason, ResponseError):
                raise RetryError(e, request=request)
    
            if isinstance(e.reason, _ProxyError):
                raise ProxyError(e, request=request)
    
            if isinstance(e.reason, _SSLError):
                # This branch is for urllib3 v1.22 and later.
                raise SSLError(e, request=request)
    
>           raise ConnectionError(e, request=request)
E           requests.exceptions.ConnectionError: HTTPSConnectionPool(host='scicrunch.org', port=443): Max retries exceeded with url: /api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7f754a370400>: Failed to establish a new connection: [Errno 110] Connection timed out'))

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/adapters.py:516: ConnectionError
_____________________ test_finding_contextual_information ______________________

self = <urllib3.connection.HTTPSConnection object at 0x7f754b649a60>

    def _new_conn(self):
        """Establish a socket connection and set nodelay settings on it.
    
        :return: New socket connection.
        """
        extra_kw = {}
        if self.source_address:
            extra_kw["source_address"] = self.source_address
    
        if self.socket_options:
            extra_kw["socket_options"] = self.socket_options
    
        try:
>           conn = connection.create_connection(
                (self._dns_host, self.port), self.timeout, **extra_kw
            )

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connection.py:169: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

address = ('scicrunch.org', 443), timeout = None, source_address = None
socket_options = [(6, 1, 1)]

    def create_connection(
        address,
        timeout=socket._GLOBAL_DEFAULT_TIMEOUT,
        source_address=None,
        socket_options=None,
    ):
        """Connect to *address* and return the socket object.
    
        Convenience function.  Connect to *address* (a 2-tuple ``(host,
        port)``) and return the socket object.  Passing the optional
        *timeout* parameter will set the timeout on the socket instance
        before attempting to connect.  If no *timeout* is supplied, the
        global default timeout setting returned by :func:`socket.getdefaulttimeout`
        is used.  If *source_address* is set it must be a tuple of (host, port)
        for the socket to bind as a source address before making the connection.
        An host of '' or port 0 tells the OS to use the default.
        """
    
        host, port = address
        if host.startswith("["):
            host = host.strip("[]")
        err = None
    
        # Using the value from allowed_gai_family() in the context of getaddrinfo lets
        # us select whether to work with IPv4 DNS records, IPv6 records, or both.
        # The original create_connection function always returns all records.
        family = allowed_gai_family()
    
        try:
            host.encode("idna")
        except UnicodeError:
            return six.raise_from(
                LocationParseError(u"'%s', label empty or too long" % host), None
            )
    
        for res in socket.getaddrinfo(host, port, family, socket.SOCK_STREAM):
            af, socktype, proto, canonname, sa = res
            sock = None
            try:
                sock = socket.socket(af, socktype, proto)
    
                # If provided, set socket level options before connecting.
                _set_socket_options(sock, socket_options)
    
                if timeout is not socket._GLOBAL_DEFAULT_TIMEOUT:
                    sock.settimeout(timeout)
                if source_address:
                    sock.bind(source_address)
                sock.connect(sa)
                return sock
    
            except socket.error as e:
                err = e
                if sock is not None:
                    sock.close()
                    sock = None
    
        if err is not None:
>           raise err

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/util/connection.py:96: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

address = ('scicrunch.org', 443), timeout = None, source_address = None
socket_options = [(6, 1, 1)]

    def create_connection(
        address,
        timeout=socket._GLOBAL_DEFAULT_TIMEOUT,
        source_address=None,
        socket_options=None,
    ):
        """Connect to *address* and return the socket object.
    
        Convenience function.  Connect to *address* (a 2-tuple ``(host,
        port)``) and return the socket object.  Passing the optional
        *timeout* parameter will set the timeout on the socket instance
        before attempting to connect.  If no *timeout* is supplied, the
        global default timeout setting returned by :func:`socket.getdefaulttimeout`
        is used.  If *source_address* is set it must be a tuple of (host, port)
        for the socket to bind as a source address before making the connection.
        An host of '' or port 0 tells the OS to use the default.
        """
    
        host, port = address
        if host.startswith("["):
            host = host.strip("[]")
        err = None
    
        # Using the value from allowed_gai_family() in the context of getaddrinfo lets
        # us select whether to work with IPv4 DNS records, IPv6 records, or both.
        # The original create_connection function always returns all records.
        family = allowed_gai_family()
    
        try:
            host.encode("idna")
        except UnicodeError:
            return six.raise_from(
                LocationParseError(u"'%s', label empty or too long" % host), None
            )
    
        for res in socket.getaddrinfo(host, port, family, socket.SOCK_STREAM):
            af, socktype, proto, canonname, sa = res
            sock = None
            try:
                sock = socket.socket(af, socktype, proto)
    
                # If provided, set socket level options before connecting.
                _set_socket_options(sock, socket_options)
    
                if timeout is not socket._GLOBAL_DEFAULT_TIMEOUT:
                    sock.settimeout(timeout)
                if source_address:
                    sock.bind(source_address)
>               sock.connect(sa)
E               TimeoutError: [Errno 110] Connection timed out

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/util/connection.py:86: TimeoutError

During handling of the above exception, another exception occurred:

self = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754b649220>
method = 'POST'
url = '/api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf'
body = b'{"size": 999, "query": {"terms": {"pennsieve.identifier": ["76"]}}}'
headers = {'User-Agent': 'python-requests/2.25.1', 'Accept-Encoding': 'gzip, deflate', 'Accept': '*/*', 'Connection': 'keep-alive', 'Content-Length': '67', 'Content-Type': 'application/json'}
retries = Retry(total=0, connect=None, read=False, redirect=None, status=None)
redirect = False, assert_same_host = False
timeout = Timeout(connect=None, read=None, total=None), pool_timeout = None
release_conn = False, chunked = False, body_pos = None
response_kw = {'decode_content': False, 'preload_content': False}
parsed_url = Url(scheme=None, auth=None, host=None, port=None, path='/api/1/elastic/SPARC_PortalDatasets_dev/_search', query='api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf', fragment=None)
destination_scheme = None, conn = None, release_this_conn = True
http_tunnel_required = False, err = None, clean_exit = False

    def urlopen(
        self,
        method,
        url,
        body=None,
        headers=None,
        retries=None,
        redirect=True,
        assert_same_host=True,
        timeout=_Default,
        pool_timeout=None,
        release_conn=None,
        chunked=False,
        body_pos=None,
        **response_kw
    ):
        """
        Get a connection from the pool and perform an HTTP request. This is the
        lowest level call for making a request, so you'll need to specify all
        the raw details.
    
        .. note::
    
           More commonly, it's appropriate to use a convenience method provided
           by :class:`.RequestMethods`, such as :meth:`request`.
    
        .. note::
    
           `release_conn` will only behave as expected if
           `preload_content=False` because we want to make
           `preload_content=False` the default behaviour someday soon without
           breaking backwards compatibility.
    
        :param method:
            HTTP request method (such as GET, POST, PUT, etc.)
    
        :param url:
            The URL to perform the request on.
    
        :param body:
            Data to send in the request body, either :class:`str`, :class:`bytes`,
            an iterable of :class:`str`/:class:`bytes`, or a file-like object.
    
        :param headers:
            Dictionary of custom headers to send, such as User-Agent,
            If-None-Match, etc. If None, pool headers are used. If provided,
            these headers completely replace any pool-specific headers.
    
        :param retries:
            Configure the number of retries to allow before raising a
            :class:`~urllib3.exceptions.MaxRetryError` exception.
    
            Pass ``None`` to retry until you receive a response. Pass a
            :class:`~urllib3.util.retry.Retry` object for fine-grained control
            over different types of retries.
            Pass an integer number to retry connection errors that many times,
            but no other types of errors. Pass zero to never retry.
    
            If ``False``, then retries are disabled and any exception is raised
            immediately. Also, instead of raising a MaxRetryError on redirects,
            the redirect response will be returned.
    
        :type retries: :class:`~urllib3.util.retry.Retry`, False, or an int.
    
        :param redirect:
            If True, automatically handle redirects (status codes 301, 302,
            303, 307, 308). Each redirect counts as a retry. Disabling retries
            will disable redirect, too.
    
        :param assert_same_host:
            If ``True``, will make sure that the host of the pool requests is
            consistent else will raise HostChangedError. When ``False``, you can
            use the pool on an HTTP proxy and request foreign hosts.
    
        :param timeout:
            If specified, overrides the default timeout for this one
            request. It may be a float (in seconds) or an instance of
            :class:`urllib3.util.Timeout`.
    
        :param pool_timeout:
            If set and the pool is set to block=True, then this method will
            block for ``pool_timeout`` seconds and raise EmptyPoolError if no
            connection is available within the time period.
    
        :param release_conn:
            If False, then the urlopen call will not release the connection
            back into the pool once a response is received (but will release if
            you read the entire contents of the response such as when
            `preload_content=True`). This is useful if you're not preloading
            the response's content immediately. You will need to call
            ``r.release_conn()`` on the response ``r`` to return the connection
            back into the pool. If None, it takes the value of
            ``response_kw.get('preload_content', True)``.
    
        :param chunked:
            If True, urllib3 will send the body using chunked transfer
            encoding. Otherwise, urllib3 will send the body using the standard
            content-length form. Defaults to False.
    
        :param int body_pos:
            Position to seek to in file-like body in the event of a retry or
            redirect. Typically this won't need to be set because urllib3 will
            auto-populate the value when needed.
    
        :param \\**response_kw:
            Additional parameters are passed to
            :meth:`urllib3.response.HTTPResponse.from_httplib`
        """
    
        parsed_url = parse_url(url)
        destination_scheme = parsed_url.scheme
    
        if headers is None:
            headers = self.headers
    
        if not isinstance(retries, Retry):
            retries = Retry.from_int(retries, redirect=redirect, default=self.retries)
    
        if release_conn is None:
            release_conn = response_kw.get("preload_content", True)
    
        # Check host
        if assert_same_host and not self.is_same_host(url):
            raise HostChangedError(self, url, retries)
    
        # Ensure that the URL we're connecting to is properly encoded
        if url.startswith("/"):
            url = six.ensure_str(_encode_target(url))
        else:
            url = six.ensure_str(parsed_url.url)
    
        conn = None
    
        # Track whether `conn` needs to be released before
        # returning/raising/recursing. Update this variable if necessary, and
        # leave `release_conn` constant throughout the function. That way, if
        # the function recurses, the original value of `release_conn` will be
        # passed down into the recursive call, and its value will be respected.
        #
        # See issue #651 [1] for details.
        #
        # [1] <https://github.com/urllib3/urllib3/issues/651>
        release_this_conn = release_conn
    
        http_tunnel_required = connection_requires_http_tunnel(
            self.proxy, self.proxy_config, destination_scheme
        )
    
        # Merge the proxy headers. Only done when not using HTTP CONNECT. We
        # have to copy the headers dict so we can safely change it without those
        # changes being reflected in anyone else's copy.
        if not http_tunnel_required:
            headers = headers.copy()
            headers.update(self.proxy_headers)
    
        # Must keep the exception bound to a separate variable or else Python 3
        # complains about UnboundLocalError.
        err = None
    
        # Keep track of whether we cleanly exited the except block. This
        # ensures we do proper cleanup in finally.
        clean_exit = False
    
        # Rewind body position, if needed. Record current position
        # for future rewinds in the event of a redirect/retry.
        body_pos = set_file_position(body, body_pos)
    
        try:
            # Request a connection from the queue.
            timeout_obj = self._get_timeout(timeout)
            conn = self._get_conn(timeout=pool_timeout)
    
            conn.timeout = timeout_obj.connect_timeout
    
            is_new_proxy_conn = self.proxy is not None and not getattr(
                conn, "sock", None
            )
            if is_new_proxy_conn and http_tunnel_required:
                self._prepare_proxy(conn)
    
            # Make the request on the httplib connection object.
>           httplib_response = self._make_request(
                conn,
                method,
                url,
                timeout=timeout_obj,
                body=body,
                headers=headers,
                chunked=chunked,
            )

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py:699: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754b649220>
conn = <urllib3.connection.HTTPSConnection object at 0x7f754b649a60>
method = 'POST'
url = '/api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf'
timeout = Timeout(connect=None, read=None, total=None), chunked = False
httplib_request_kw = {'body': b'{"size": 999, "query": {"terms": {"pennsieve.identifier": ["76"]}}}', 'headers': {'User-Agent': 'python-req...ip, deflate', 'Accept': '*/*', 'Connection': 'keep-alive', 'Content-Length': '67', 'Content-Type': 'application/json'}}
timeout_obj = Timeout(connect=None, read=None, total=None)

    def _make_request(
        self, conn, method, url, timeout=_Default, chunked=False, **httplib_request_kw
    ):
        """
        Perform a request on a given urllib connection object taken from our
        pool.
    
        :param conn:
            a connection from one of our connection pools
    
        :param timeout:
            Socket timeout in seconds for the request. This can be a
            float or integer, which will set the same timeout value for
            the socket connect and the socket read, or an instance of
            :class:`urllib3.util.Timeout`, which gives you more fine-grained
            control over your timeouts.
        """
        self.num_requests += 1
    
        timeout_obj = self._get_timeout(timeout)
        timeout_obj.start_connect()
        conn.timeout = timeout_obj.connect_timeout
    
        # Trigger any extra validation we need to do.
        try:
>           self._validate_conn(conn)

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py:382: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754b649220>
conn = <urllib3.connection.HTTPSConnection object at 0x7f754b649a60>

    def _validate_conn(self, conn):
        """
        Called right before a request is made, after the socket is created.
        """
        super(HTTPSConnectionPool, self)._validate_conn(conn)
    
        # Force connect early to allow us to validate the connection.
        if not getattr(conn, "sock", None):  # AppEngine might not have  `.sock`
>           conn.connect()

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py:1010: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connection.HTTPSConnection object at 0x7f754b649a60>

    def connect(self):
        # Add certificate verification
>       conn = self._new_conn()

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connection.py:353: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connection.HTTPSConnection object at 0x7f754b649a60>

    def _new_conn(self):
        """Establish a socket connection and set nodelay settings on it.
    
        :return: New socket connection.
        """
        extra_kw = {}
        if self.source_address:
            extra_kw["source_address"] = self.source_address
    
        if self.socket_options:
            extra_kw["socket_options"] = self.socket_options
    
        try:
            conn = connection.create_connection(
                (self._dns_host, self.port), self.timeout, **extra_kw
            )
    
        except SocketTimeout:
            raise ConnectTimeoutError(
                self,
                "Connection to %s timed out. (connect timeout=%s)"
                % (self.host, self.timeout),
            )
    
        except SocketError as e:
>           raise NewConnectionError(
                self, "Failed to establish a new connection: %s" % e
            )
E           urllib3.exceptions.NewConnectionError: <urllib3.connection.HTTPSConnection object at 0x7f754b649a60>: Failed to establish a new connection: [Errno 110] Connection timed out

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connection.py:181: NewConnectionError

During handling of the above exception, another exception occurred:

self = <requests.adapters.HTTPAdapter object at 0x7f7550036c10>
request = <PreparedRequest [POST]>, stream = False
timeout = Timeout(connect=None, read=None, total=None), verify = True
cert = None, proxies = OrderedDict()

    def send(self, request, stream=False, timeout=None, verify=True, cert=None, proxies=None):
        """Sends PreparedRequest object. Returns Response object.
    
        :param request: The :class:`PreparedRequest <PreparedRequest>` being sent.
        :param stream: (optional) Whether to stream the request content.
        :param timeout: (optional) How long to wait for the server to send
            data before giving up, as a float, or a :ref:`(connect timeout,
            read timeout) <timeouts>` tuple.
        :type timeout: float or tuple or urllib3 Timeout object
        :param verify: (optional) Either a boolean, in which case it controls whether
            we verify the server's TLS certificate, or a string, in which case it
            must be a path to a CA bundle to use
        :param cert: (optional) Any user-provided SSL certificate to be trusted.
        :param proxies: (optional) The proxies dictionary to apply to the request.
        :rtype: requests.Response
        """
    
        try:
            conn = self.get_connection(request.url, proxies)
        except LocationValueError as e:
            raise InvalidURL(e, request=request)
    
        self.cert_verify(conn, request.url, verify, cert)
        url = self.request_url(request, proxies)
        self.add_headers(request, stream=stream, timeout=timeout, verify=verify, cert=cert, proxies=proxies)
    
        chunked = not (request.body is None or 'Content-Length' in request.headers)
    
        if isinstance(timeout, tuple):
            try:
                connect, read = timeout
                timeout = TimeoutSauce(connect=connect, read=read)
            except ValueError as e:
                # this may raise a string formatting error.
                err = ("Invalid timeout {}. Pass a (connect, read) "
                       "timeout tuple, or a single float to set "
                       "both timeouts to the same value".format(timeout))
                raise ValueError(err)
        elif isinstance(timeout, TimeoutSauce):
            pass
        else:
            timeout = TimeoutSauce(connect=timeout, read=timeout)
    
        try:
            if not chunked:
>               resp = conn.urlopen(
                    method=request.method,
                    url=url,
                    body=request.body,
                    headers=request.headers,
                    redirect=False,
                    assert_same_host=False,
                    preload_content=False,
                    decode_content=False,
                    retries=self.max_retries,
                    timeout=timeout
                )

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/adapters.py:439: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754b649220>
method = 'POST'
url = '/api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf'
body = b'{"size": 999, "query": {"terms": {"pennsieve.identifier": ["76"]}}}'
headers = {'User-Agent': 'python-requests/2.25.1', 'Accept-Encoding': 'gzip, deflate', 'Accept': '*/*', 'Connection': 'keep-alive', 'Content-Length': '67', 'Content-Type': 'application/json'}
retries = Retry(total=0, connect=None, read=False, redirect=None, status=None)
redirect = False, assert_same_host = False
timeout = Timeout(connect=None, read=None, total=None), pool_timeout = None
release_conn = False, chunked = False, body_pos = None
response_kw = {'decode_content': False, 'preload_content': False}
parsed_url = Url(scheme=None, auth=None, host=None, port=None, path='/api/1/elastic/SPARC_PortalDatasets_dev/_search', query='api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf', fragment=None)
destination_scheme = None, conn = None, release_this_conn = True
http_tunnel_required = False, err = None, clean_exit = False

    def urlopen(
        self,
        method,
        url,
        body=None,
        headers=None,
        retries=None,
        redirect=True,
        assert_same_host=True,
        timeout=_Default,
        pool_timeout=None,
        release_conn=None,
        chunked=False,
        body_pos=None,
        **response_kw
    ):
        """
        Get a connection from the pool and perform an HTTP request. This is the
        lowest level call for making a request, so you'll need to specify all
        the raw details.
    
        .. note::
    
           More commonly, it's appropriate to use a convenience method provided
           by :class:`.RequestMethods`, such as :meth:`request`.
    
        .. note::
    
           `release_conn` will only behave as expected if
           `preload_content=False` because we want to make
           `preload_content=False` the default behaviour someday soon without
           breaking backwards compatibility.
    
        :param method:
            HTTP request method (such as GET, POST, PUT, etc.)
    
        :param url:
            The URL to perform the request on.
    
        :param body:
            Data to send in the request body, either :class:`str`, :class:`bytes`,
            an iterable of :class:`str`/:class:`bytes`, or a file-like object.
    
        :param headers:
            Dictionary of custom headers to send, such as User-Agent,
            If-None-Match, etc. If None, pool headers are used. If provided,
            these headers completely replace any pool-specific headers.
    
        :param retries:
            Configure the number of retries to allow before raising a
            :class:`~urllib3.exceptions.MaxRetryError` exception.
    
            Pass ``None`` to retry until you receive a response. Pass a
            :class:`~urllib3.util.retry.Retry` object for fine-grained control
            over different types of retries.
            Pass an integer number to retry connection errors that many times,
            but no other types of errors. Pass zero to never retry.
    
            If ``False``, then retries are disabled and any exception is raised
            immediately. Also, instead of raising a MaxRetryError on redirects,
            the redirect response will be returned.
    
        :type retries: :class:`~urllib3.util.retry.Retry`, False, or an int.
    
        :param redirect:
            If True, automatically handle redirects (status codes 301, 302,
            303, 307, 308). Each redirect counts as a retry. Disabling retries
            will disable redirect, too.
    
        :param assert_same_host:
            If ``True``, will make sure that the host of the pool requests is
            consistent else will raise HostChangedError. When ``False``, you can
            use the pool on an HTTP proxy and request foreign hosts.
    
        :param timeout:
            If specified, overrides the default timeout for this one
            request. It may be a float (in seconds) or an instance of
            :class:`urllib3.util.Timeout`.
    
        :param pool_timeout:
            If set and the pool is set to block=True, then this method will
            block for ``pool_timeout`` seconds and raise EmptyPoolError if no
            connection is available within the time period.
    
        :param release_conn:
            If False, then the urlopen call will not release the connection
            back into the pool once a response is received (but will release if
            you read the entire contents of the response such as when
            `preload_content=True`). This is useful if you're not preloading
            the response's content immediately. You will need to call
            ``r.release_conn()`` on the response ``r`` to return the connection
            back into the pool. If None, it takes the value of
            ``response_kw.get('preload_content', True)``.
    
        :param chunked:
            If True, urllib3 will send the body using chunked transfer
            encoding. Otherwise, urllib3 will send the body using the standard
            content-length form. Defaults to False.
    
        :param int body_pos:
            Position to seek to in file-like body in the event of a retry or
            redirect. Typically this won't need to be set because urllib3 will
            auto-populate the value when needed.
    
        :param \\**response_kw:
            Additional parameters are passed to
            :meth:`urllib3.response.HTTPResponse.from_httplib`
        """
    
        parsed_url = parse_url(url)
        destination_scheme = parsed_url.scheme
    
        if headers is None:
            headers = self.headers
    
        if not isinstance(retries, Retry):
            retries = Retry.from_int(retries, redirect=redirect, default=self.retries)
    
        if release_conn is None:
            release_conn = response_kw.get("preload_content", True)
    
        # Check host
        if assert_same_host and not self.is_same_host(url):
            raise HostChangedError(self, url, retries)
    
        # Ensure that the URL we're connecting to is properly encoded
        if url.startswith("/"):
            url = six.ensure_str(_encode_target(url))
        else:
            url = six.ensure_str(parsed_url.url)
    
        conn = None
    
        # Track whether `conn` needs to be released before
        # returning/raising/recursing. Update this variable if necessary, and
        # leave `release_conn` constant throughout the function. That way, if
        # the function recurses, the original value of `release_conn` will be
        # passed down into the recursive call, and its value will be respected.
        #
        # See issue #651 [1] for details.
        #
        # [1] <https://github.com/urllib3/urllib3/issues/651>
        release_this_conn = release_conn
    
        http_tunnel_required = connection_requires_http_tunnel(
            self.proxy, self.proxy_config, destination_scheme
        )
    
        # Merge the proxy headers. Only done when not using HTTP CONNECT. We
        # have to copy the headers dict so we can safely change it without those
        # changes being reflected in anyone else's copy.
        if not http_tunnel_required:
            headers = headers.copy()
            headers.update(self.proxy_headers)
    
        # Must keep the exception bound to a separate variable or else Python 3
        # complains about UnboundLocalError.
        err = None
    
        # Keep track of whether we cleanly exited the except block. This
        # ensures we do proper cleanup in finally.
        clean_exit = False
    
        # Rewind body position, if needed. Record current position
        # for future rewinds in the event of a redirect/retry.
        body_pos = set_file_position(body, body_pos)
    
        try:
            # Request a connection from the queue.
            timeout_obj = self._get_timeout(timeout)
            conn = self._get_conn(timeout=pool_timeout)
    
            conn.timeout = timeout_obj.connect_timeout
    
            is_new_proxy_conn = self.proxy is not None and not getattr(
                conn, "sock", None
            )
            if is_new_proxy_conn and http_tunnel_required:
                self._prepare_proxy(conn)
    
            # Make the request on the httplib connection object.
            httplib_response = self._make_request(
                conn,
                method,
                url,
                timeout=timeout_obj,
                body=body,
                headers=headers,
                chunked=chunked,
            )
    
            # If we're going to release the connection in ``finally:``, then
            # the response doesn't need to know about the connection. Otherwise
            # it will also try to release it and we'll have a double-release
            # mess.
            response_conn = conn if not release_conn else None
    
            # Pass method to Response for length checking
            response_kw["request_method"] = method
    
            # Import httplib's response into our own wrapper object
            response = self.ResponseCls.from_httplib(
                httplib_response,
                pool=self,
                connection=response_conn,
                retries=retries,
                **response_kw
            )
    
            # Everything went great!
            clean_exit = True
    
        except EmptyPoolError:
            # Didn't get a connection from the pool, no need to clean up
            clean_exit = True
            release_this_conn = False
            raise
    
        except (
            TimeoutError,
            HTTPException,
            SocketError,
            ProtocolError,
            BaseSSLError,
            SSLError,
            CertificateError,
        ) as e:
            # Discard the connection for these exceptions. It will be
            # replaced during the next _get_conn() call.
            clean_exit = False
            if isinstance(e, (BaseSSLError, CertificateError)):
                e = SSLError(e)
            elif isinstance(e, (SocketError, NewConnectionError)) and self.proxy:
                e = ProxyError("Cannot connect to proxy.", e)
            elif isinstance(e, (SocketError, HTTPException)):
                e = ProtocolError("Connection aborted.", e)
    
>           retries = retries.increment(
                method, url, error=e, _pool=self, _stacktrace=sys.exc_info()[2]
            )

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py:755: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = Retry(total=0, connect=None, read=False, redirect=None, status=None)
method = 'POST'
url = '/api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf'
response = None
error = NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7f754b649a60>: Failed to establish a new connection: [Errno 110] Connection timed out')
_pool = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754b649220>
_stacktrace = <traceback object at 0x7f754a28c8c0>

    def increment(
        self,
        method=None,
        url=None,
        response=None,
        error=None,
        _pool=None,
        _stacktrace=None,
    ):
        """Return a new Retry object with incremented retry counters.
    
        :param response: A response object, or None, if the server did not
            return a response.
        :type response: :class:`~urllib3.response.HTTPResponse`
        :param Exception error: An error encountered during the request, or
            None if the response was received successfully.
    
        :return: A new ``Retry`` object.
        """
        if self.total is False and error:
            # Disabled, indicate to re-raise the error.
            raise six.reraise(type(error), error, _stacktrace)
    
        total = self.total
        if total is not None:
            total -= 1
    
        connect = self.connect
        read = self.read
        redirect = self.redirect
        status_count = self.status
        other = self.other
        cause = "unknown"
        status = None
        redirect_location = None
    
        if error and self._is_connection_error(error):
            # Connect retry?
            if connect is False:
                raise six.reraise(type(error), error, _stacktrace)
            elif connect is not None:
                connect -= 1
    
        elif error and self._is_read_error(error):
            # Read retry?
            if read is False or not self._is_method_retryable(method):
                raise six.reraise(type(error), error, _stacktrace)
            elif read is not None:
                read -= 1
    
        elif error:
            # Other retry?
            if other is not None:
                other -= 1
    
        elif response and response.get_redirect_location():
            # Redirect retry?
            if redirect is not None:
                redirect -= 1
            cause = "too many redirects"
            redirect_location = response.get_redirect_location()
            status = response.status
    
        else:
            # Incrementing because of a server error like a 500 in
            # status_forcelist and the given method is in the allowed_methods
            cause = ResponseError.GENERIC_ERROR
            if response and response.status:
                if status_count is not None:
                    status_count -= 1
                cause = ResponseError.SPECIFIC_ERROR.format(status_code=response.status)
                status = response.status
    
        history = self.history + (
            RequestHistory(method, url, error, status, redirect_location),
        )
    
        new_retry = self.new(
            total=total,
            connect=connect,
            read=read,
            redirect=redirect,
            status=status_count,
            other=other,
            history=history,
        )
    
        if new_retry.is_exhausted():
>           raise MaxRetryError(_pool, url, error or ResponseError(cause))
E           urllib3.exceptions.MaxRetryError: HTTPSConnectionPool(host='scicrunch.org', port=443): Max retries exceeded with url: /api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7f754b649a60>: Failed to establish a new connection: [Errno 110] Connection timed out'))

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/util/retry.py:574: MaxRetryError

During handling of the above exception, another exception occurred:

client = <FlaskClient <Flask 'app.main'>>

    def test_finding_contextual_information(client):
>       r = client.get('/dataset_info/using_multiple_discoverIds/?discoverIds=76')

tests/test_scicrunch.py:514: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/werkzeug/test.py:1029: in get
    return self.open(*args, **kw)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/testing.py:222: in open
    return Client.open(
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/werkzeug/test.py:993: in open
    response = self.run_wsgi_app(environ.copy(), buffered=buffered)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/werkzeug/test.py:884: in run_wsgi_app
    rv = run_wsgi_app(self.application, environ, buffered=buffered)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/werkzeug/test.py:1119: in run_wsgi_app
    app_rv = app(environ, start_response)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:2463: in __call__
    return self.wsgi_app(environ, start_response)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:2449: in wsgi_app
    response = self.handle_exception(e)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask_cors/extension.py:161: in wrapped_function
    return cors_after_request(app.make_response(f(*args, **kwargs)))
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1866: in handle_exception
    reraise(exc_type, exc_value, tb)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/_compat.py:39: in reraise
    raise value
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:2446: in wsgi_app
    response = self.full_dispatch_request()
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1951: in full_dispatch_request
    rv = self.handle_user_exception(e)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask_cors/extension.py:161: in wrapped_function
    return cors_after_request(app.make_response(f(*args, **kwargs)))
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1820: in handle_user_exception
    reraise(exc_type, exc_value, tb)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/_compat.py:39: in reraise
    raise value
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1949: in full_dispatch_request
    rv = self.dispatch_request()
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1935: in dispatch_request
    return self.view_functions[rule.endpoint](**req.view_args)
app/main.py:567: in get_dataset_info_discoverIds
    return process_results(dataset_search(query))
app/main.py:663: in dataset_search
    response = requests.post(f'{Config.SCI_CRUNCH_HOST}/_search',
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/api.py:119: in post
    return request('post', url, data=data, json=json, **kwargs)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/api.py:61: in request
    return session.request(method=method, url=url, **kwargs)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/sessions.py:542: in request
    resp = self.send(prep, **send_kwargs)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/sessions.py:655: in send
    r = adapter.send(request, **kwargs)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <requests.adapters.HTTPAdapter object at 0x7f7550036c10>
request = <PreparedRequest [POST]>, stream = False
timeout = Timeout(connect=None, read=None, total=None), verify = True
cert = None, proxies = OrderedDict()

    def send(self, request, stream=False, timeout=None, verify=True, cert=None, proxies=None):
        """Sends PreparedRequest object. Returns Response object.
    
        :param request: The :class:`PreparedRequest <PreparedRequest>` being sent.
        :param stream: (optional) Whether to stream the request content.
        :param timeout: (optional) How long to wait for the server to send
            data before giving up, as a float, or a :ref:`(connect timeout,
            read timeout) <timeouts>` tuple.
        :type timeout: float or tuple or urllib3 Timeout object
        :param verify: (optional) Either a boolean, in which case it controls whether
            we verify the server's TLS certificate, or a string, in which case it
            must be a path to a CA bundle to use
        :param cert: (optional) Any user-provided SSL certificate to be trusted.
        :param proxies: (optional) The proxies dictionary to apply to the request.
        :rtype: requests.Response
        """
    
        try:
            conn = self.get_connection(request.url, proxies)
        except LocationValueError as e:
            raise InvalidURL(e, request=request)
    
        self.cert_verify(conn, request.url, verify, cert)
        url = self.request_url(request, proxies)
        self.add_headers(request, stream=stream, timeout=timeout, verify=verify, cert=cert, proxies=proxies)
    
        chunked = not (request.body is None or 'Content-Length' in request.headers)
    
        if isinstance(timeout, tuple):
            try:
                connect, read = timeout
                timeout = TimeoutSauce(connect=connect, read=read)
            except ValueError as e:
                # this may raise a string formatting error.
                err = ("Invalid timeout {}. Pass a (connect, read) "
                       "timeout tuple, or a single float to set "
                       "both timeouts to the same value".format(timeout))
                raise ValueError(err)
        elif isinstance(timeout, TimeoutSauce):
            pass
        else:
            timeout = TimeoutSauce(connect=timeout, read=timeout)
    
        try:
            if not chunked:
                resp = conn.urlopen(
                    method=request.method,
                    url=url,
                    body=request.body,
                    headers=request.headers,
                    redirect=False,
                    assert_same_host=False,
                    preload_content=False,
                    decode_content=False,
                    retries=self.max_retries,
                    timeout=timeout
                )
    
            # Send the request.
            else:
                if hasattr(conn, 'proxy_pool'):
                    conn = conn.proxy_pool
    
                low_conn = conn._get_conn(timeout=DEFAULT_POOL_TIMEOUT)
    
                try:
                    low_conn.putrequest(request.method,
                                        url,
                                        skip_accept_encoding=True)
    
                    for header, value in request.headers.items():
                        low_conn.putheader(header, value)
    
                    low_conn.endheaders()
    
                    for i in request.body:
                        low_conn.send(hex(len(i))[2:].encode('utf-8'))
                        low_conn.send(b'\r\n')
                        low_conn.send(i)
                        low_conn.send(b'\r\n')
                    low_conn.send(b'0\r\n\r\n')
    
                    # Receive the response from the server
                    try:
                        # For Python 2.7, use buffering of HTTP responses
                        r = low_conn.getresponse(buffering=True)
                    except TypeError:
                        # For compatibility with Python 3.3+
                        r = low_conn.getresponse()
    
                    resp = HTTPResponse.from_httplib(
                        r,
                        pool=conn,
                        connection=low_conn,
                        preload_content=False,
                        decode_content=False
                    )
                except:
                    # If we hit any problems here, clean up the connection.
                    # Then, reraise so that we can handle the actual exception.
                    low_conn.close()
                    raise
    
        except (ProtocolError, socket.error) as err:
            raise ConnectionError(err, request=request)
    
        except MaxRetryError as e:
            if isinstance(e.reason, ConnectTimeoutError):
                # TODO: Remove this in 3.0.0: see #2811
                if not isinstance(e.reason, NewConnectionError):
                    raise ConnectTimeout(e, request=request)
    
            if isinstance(e.reason, ResponseError):
                raise RetryError(e, request=request)
    
            if isinstance(e.reason, _ProxyError):
                raise ProxyError(e, request=request)
    
            if isinstance(e.reason, _SSLError):
                # This branch is for urllib3 v1.22 and later.
                raise SSLError(e, request=request)
    
>           raise ConnectionError(e, request=request)
E           requests.exceptions.ConnectionError: HTTPSConnectionPool(host='scicrunch.org', port=443): Max retries exceeded with url: /api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7f754b649a60>: Failed to establish a new connection: [Errno 110] Connection timed out'))

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/adapters.py:516: ConnectionError
____________________ test_undefined_version_dataset_search _____________________

self = <urllib3.connection.HTTPSConnection object at 0x7f754a87e6a0>

    def _new_conn(self):
        """Establish a socket connection and set nodelay settings on it.
    
        :return: New socket connection.
        """
        extra_kw = {}
        if self.source_address:
            extra_kw["source_address"] = self.source_address
    
        if self.socket_options:
            extra_kw["socket_options"] = self.socket_options
    
        try:
>           conn = connection.create_connection(
                (self._dns_host, self.port), self.timeout, **extra_kw
            )

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connection.py:169: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

address = ('scicrunch.org', 443), timeout = None, source_address = None
socket_options = [(6, 1, 1)]

    def create_connection(
        address,
        timeout=socket._GLOBAL_DEFAULT_TIMEOUT,
        source_address=None,
        socket_options=None,
    ):
        """Connect to *address* and return the socket object.
    
        Convenience function.  Connect to *address* (a 2-tuple ``(host,
        port)``) and return the socket object.  Passing the optional
        *timeout* parameter will set the timeout on the socket instance
        before attempting to connect.  If no *timeout* is supplied, the
        global default timeout setting returned by :func:`socket.getdefaulttimeout`
        is used.  If *source_address* is set it must be a tuple of (host, port)
        for the socket to bind as a source address before making the connection.
        An host of '' or port 0 tells the OS to use the default.
        """
    
        host, port = address
        if host.startswith("["):
            host = host.strip("[]")
        err = None
    
        # Using the value from allowed_gai_family() in the context of getaddrinfo lets
        # us select whether to work with IPv4 DNS records, IPv6 records, or both.
        # The original create_connection function always returns all records.
        family = allowed_gai_family()
    
        try:
            host.encode("idna")
        except UnicodeError:
            return six.raise_from(
                LocationParseError(u"'%s', label empty or too long" % host), None
            )
    
        for res in socket.getaddrinfo(host, port, family, socket.SOCK_STREAM):
            af, socktype, proto, canonname, sa = res
            sock = None
            try:
                sock = socket.socket(af, socktype, proto)
    
                # If provided, set socket level options before connecting.
                _set_socket_options(sock, socket_options)
    
                if timeout is not socket._GLOBAL_DEFAULT_TIMEOUT:
                    sock.settimeout(timeout)
                if source_address:
                    sock.bind(source_address)
                sock.connect(sa)
                return sock
    
            except socket.error as e:
                err = e
                if sock is not None:
                    sock.close()
                    sock = None
    
        if err is not None:
>           raise err

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/util/connection.py:96: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

address = ('scicrunch.org', 443), timeout = None, source_address = None
socket_options = [(6, 1, 1)]

    def create_connection(
        address,
        timeout=socket._GLOBAL_DEFAULT_TIMEOUT,
        source_address=None,
        socket_options=None,
    ):
        """Connect to *address* and return the socket object.
    
        Convenience function.  Connect to *address* (a 2-tuple ``(host,
        port)``) and return the socket object.  Passing the optional
        *timeout* parameter will set the timeout on the socket instance
        before attempting to connect.  If no *timeout* is supplied, the
        global default timeout setting returned by :func:`socket.getdefaulttimeout`
        is used.  If *source_address* is set it must be a tuple of (host, port)
        for the socket to bind as a source address before making the connection.
        An host of '' or port 0 tells the OS to use the default.
        """
    
        host, port = address
        if host.startswith("["):
            host = host.strip("[]")
        err = None
    
        # Using the value from allowed_gai_family() in the context of getaddrinfo lets
        # us select whether to work with IPv4 DNS records, IPv6 records, or both.
        # The original create_connection function always returns all records.
        family = allowed_gai_family()
    
        try:
            host.encode("idna")
        except UnicodeError:
            return six.raise_from(
                LocationParseError(u"'%s', label empty or too long" % host), None
            )
    
        for res in socket.getaddrinfo(host, port, family, socket.SOCK_STREAM):
            af, socktype, proto, canonname, sa = res
            sock = None
            try:
                sock = socket.socket(af, socktype, proto)
    
                # If provided, set socket level options before connecting.
                _set_socket_options(sock, socket_options)
    
                if timeout is not socket._GLOBAL_DEFAULT_TIMEOUT:
                    sock.settimeout(timeout)
                if source_address:
                    sock.bind(source_address)
>               sock.connect(sa)
E               TimeoutError: [Errno 110] Connection timed out

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/util/connection.py:86: TimeoutError

During handling of the above exception, another exception occurred:

self = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754acba940>
method = 'POST'
url = '/api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf'
body = b'{"query": {"term": {"item.curie": "10.26275/mlua-o9oj"}}}'
headers = {'User-Agent': 'python-requests/2.25.1', 'Accept-Encoding': 'gzip, deflate', 'Accept': '*/*', 'Connection': 'keep-alive', 'Content-Length': '57', 'Content-Type': 'application/json'}
retries = Retry(total=0, connect=None, read=False, redirect=None, status=None)
redirect = False, assert_same_host = False
timeout = Timeout(connect=None, read=None, total=None), pool_timeout = None
release_conn = False, chunked = False, body_pos = None
response_kw = {'decode_content': False, 'preload_content': False}
parsed_url = Url(scheme=None, auth=None, host=None, port=None, path='/api/1/elastic/SPARC_PortalDatasets_dev/_search', query='api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf', fragment=None)
destination_scheme = None, conn = None, release_this_conn = True
http_tunnel_required = False, err = None, clean_exit = False

    def urlopen(
        self,
        method,
        url,
        body=None,
        headers=None,
        retries=None,
        redirect=True,
        assert_same_host=True,
        timeout=_Default,
        pool_timeout=None,
        release_conn=None,
        chunked=False,
        body_pos=None,
        **response_kw
    ):
        """
        Get a connection from the pool and perform an HTTP request. This is the
        lowest level call for making a request, so you'll need to specify all
        the raw details.
    
        .. note::
    
           More commonly, it's appropriate to use a convenience method provided
           by :class:`.RequestMethods`, such as :meth:`request`.
    
        .. note::
    
           `release_conn` will only behave as expected if
           `preload_content=False` because we want to make
           `preload_content=False` the default behaviour someday soon without
           breaking backwards compatibility.
    
        :param method:
            HTTP request method (such as GET, POST, PUT, etc.)
    
        :param url:
            The URL to perform the request on.
    
        :param body:
            Data to send in the request body, either :class:`str`, :class:`bytes`,
            an iterable of :class:`str`/:class:`bytes`, or a file-like object.
    
        :param headers:
            Dictionary of custom headers to send, such as User-Agent,
            If-None-Match, etc. If None, pool headers are used. If provided,
            these headers completely replace any pool-specific headers.
    
        :param retries:
            Configure the number of retries to allow before raising a
            :class:`~urllib3.exceptions.MaxRetryError` exception.
    
            Pass ``None`` to retry until you receive a response. Pass a
            :class:`~urllib3.util.retry.Retry` object for fine-grained control
            over different types of retries.
            Pass an integer number to retry connection errors that many times,
            but no other types of errors. Pass zero to never retry.
    
            If ``False``, then retries are disabled and any exception is raised
            immediately. Also, instead of raising a MaxRetryError on redirects,
            the redirect response will be returned.
    
        :type retries: :class:`~urllib3.util.retry.Retry`, False, or an int.
    
        :param redirect:
            If True, automatically handle redirects (status codes 301, 302,
            303, 307, 308). Each redirect counts as a retry. Disabling retries
            will disable redirect, too.
    
        :param assert_same_host:
            If ``True``, will make sure that the host of the pool requests is
            consistent else will raise HostChangedError. When ``False``, you can
            use the pool on an HTTP proxy and request foreign hosts.
    
        :param timeout:
            If specified, overrides the default timeout for this one
            request. It may be a float (in seconds) or an instance of
            :class:`urllib3.util.Timeout`.
    
        :param pool_timeout:
            If set and the pool is set to block=True, then this method will
            block for ``pool_timeout`` seconds and raise EmptyPoolError if no
            connection is available within the time period.
    
        :param release_conn:
            If False, then the urlopen call will not release the connection
            back into the pool once a response is received (but will release if
            you read the entire contents of the response such as when
            `preload_content=True`). This is useful if you're not preloading
            the response's content immediately. You will need to call
            ``r.release_conn()`` on the response ``r`` to return the connection
            back into the pool. If None, it takes the value of
            ``response_kw.get('preload_content', True)``.
    
        :param chunked:
            If True, urllib3 will send the body using chunked transfer
            encoding. Otherwise, urllib3 will send the body using the standard
            content-length form. Defaults to False.
    
        :param int body_pos:
            Position to seek to in file-like body in the event of a retry or
            redirect. Typically this won't need to be set because urllib3 will
            auto-populate the value when needed.
    
        :param \\**response_kw:
            Additional parameters are passed to
            :meth:`urllib3.response.HTTPResponse.from_httplib`
        """
    
        parsed_url = parse_url(url)
        destination_scheme = parsed_url.scheme
    
        if headers is None:
            headers = self.headers
    
        if not isinstance(retries, Retry):
            retries = Retry.from_int(retries, redirect=redirect, default=self.retries)
    
        if release_conn is None:
            release_conn = response_kw.get("preload_content", True)
    
        # Check host
        if assert_same_host and not self.is_same_host(url):
            raise HostChangedError(self, url, retries)
    
        # Ensure that the URL we're connecting to is properly encoded
        if url.startswith("/"):
            url = six.ensure_str(_encode_target(url))
        else:
            url = six.ensure_str(parsed_url.url)
    
        conn = None
    
        # Track whether `conn` needs to be released before
        # returning/raising/recursing. Update this variable if necessary, and
        # leave `release_conn` constant throughout the function. That way, if
        # the function recurses, the original value of `release_conn` will be
        # passed down into the recursive call, and its value will be respected.
        #
        # See issue #651 [1] for details.
        #
        # [1] <https://github.com/urllib3/urllib3/issues/651>
        release_this_conn = release_conn
    
        http_tunnel_required = connection_requires_http_tunnel(
            self.proxy, self.proxy_config, destination_scheme
        )
    
        # Merge the proxy headers. Only done when not using HTTP CONNECT. We
        # have to copy the headers dict so we can safely change it without those
        # changes being reflected in anyone else's copy.
        if not http_tunnel_required:
            headers = headers.copy()
            headers.update(self.proxy_headers)
    
        # Must keep the exception bound to a separate variable or else Python 3
        # complains about UnboundLocalError.
        err = None
    
        # Keep track of whether we cleanly exited the except block. This
        # ensures we do proper cleanup in finally.
        clean_exit = False
    
        # Rewind body position, if needed. Record current position
        # for future rewinds in the event of a redirect/retry.
        body_pos = set_file_position(body, body_pos)
    
        try:
            # Request a connection from the queue.
            timeout_obj = self._get_timeout(timeout)
            conn = self._get_conn(timeout=pool_timeout)
    
            conn.timeout = timeout_obj.connect_timeout
    
            is_new_proxy_conn = self.proxy is not None and not getattr(
                conn, "sock", None
            )
            if is_new_proxy_conn and http_tunnel_required:
                self._prepare_proxy(conn)
    
            # Make the request on the httplib connection object.
>           httplib_response = self._make_request(
                conn,
                method,
                url,
                timeout=timeout_obj,
                body=body,
                headers=headers,
                chunked=chunked,
            )

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py:699: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754acba940>
conn = <urllib3.connection.HTTPSConnection object at 0x7f754a87e6a0>
method = 'POST'
url = '/api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf'
timeout = Timeout(connect=None, read=None, total=None), chunked = False
httplib_request_kw = {'body': b'{"query": {"term": {"item.curie": "10.26275/mlua-o9oj"}}}', 'headers': {'User-Agent': 'python-requests/2.25...ip, deflate', 'Accept': '*/*', 'Connection': 'keep-alive', 'Content-Length': '57', 'Content-Type': 'application/json'}}
timeout_obj = Timeout(connect=None, read=None, total=None)

    def _make_request(
        self, conn, method, url, timeout=_Default, chunked=False, **httplib_request_kw
    ):
        """
        Perform a request on a given urllib connection object taken from our
        pool.
    
        :param conn:
            a connection from one of our connection pools
    
        :param timeout:
            Socket timeout in seconds for the request. This can be a
            float or integer, which will set the same timeout value for
            the socket connect and the socket read, or an instance of
            :class:`urllib3.util.Timeout`, which gives you more fine-grained
            control over your timeouts.
        """
        self.num_requests += 1
    
        timeout_obj = self._get_timeout(timeout)
        timeout_obj.start_connect()
        conn.timeout = timeout_obj.connect_timeout
    
        # Trigger any extra validation we need to do.
        try:
>           self._validate_conn(conn)

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py:382: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754acba940>
conn = <urllib3.connection.HTTPSConnection object at 0x7f754a87e6a0>

    def _validate_conn(self, conn):
        """
        Called right before a request is made, after the socket is created.
        """
        super(HTTPSConnectionPool, self)._validate_conn(conn)
    
        # Force connect early to allow us to validate the connection.
        if not getattr(conn, "sock", None):  # AppEngine might not have  `.sock`
>           conn.connect()

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py:1010: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connection.HTTPSConnection object at 0x7f754a87e6a0>

    def connect(self):
        # Add certificate verification
>       conn = self._new_conn()

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connection.py:353: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connection.HTTPSConnection object at 0x7f754a87e6a0>

    def _new_conn(self):
        """Establish a socket connection and set nodelay settings on it.
    
        :return: New socket connection.
        """
        extra_kw = {}
        if self.source_address:
            extra_kw["source_address"] = self.source_address
    
        if self.socket_options:
            extra_kw["socket_options"] = self.socket_options
    
        try:
            conn = connection.create_connection(
                (self._dns_host, self.port), self.timeout, **extra_kw
            )
    
        except SocketTimeout:
            raise ConnectTimeoutError(
                self,
                "Connection to %s timed out. (connect timeout=%s)"
                % (self.host, self.timeout),
            )
    
        except SocketError as e:
>           raise NewConnectionError(
                self, "Failed to establish a new connection: %s" % e
            )
E           urllib3.exceptions.NewConnectionError: <urllib3.connection.HTTPSConnection object at 0x7f754a87e6a0>: Failed to establish a new connection: [Errno 110] Connection timed out

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connection.py:181: NewConnectionError

During handling of the above exception, another exception occurred:

self = <requests.adapters.HTTPAdapter object at 0x7f754acba670>
request = <PreparedRequest [POST]>, stream = False
timeout = Timeout(connect=None, read=None, total=None), verify = True
cert = None, proxies = OrderedDict()

    def send(self, request, stream=False, timeout=None, verify=True, cert=None, proxies=None):
        """Sends PreparedRequest object. Returns Response object.
    
        :param request: The :class:`PreparedRequest <PreparedRequest>` being sent.
        :param stream: (optional) Whether to stream the request content.
        :param timeout: (optional) How long to wait for the server to send
            data before giving up, as a float, or a :ref:`(connect timeout,
            read timeout) <timeouts>` tuple.
        :type timeout: float or tuple or urllib3 Timeout object
        :param verify: (optional) Either a boolean, in which case it controls whether
            we verify the server's TLS certificate, or a string, in which case it
            must be a path to a CA bundle to use
        :param cert: (optional) Any user-provided SSL certificate to be trusted.
        :param proxies: (optional) The proxies dictionary to apply to the request.
        :rtype: requests.Response
        """
    
        try:
            conn = self.get_connection(request.url, proxies)
        except LocationValueError as e:
            raise InvalidURL(e, request=request)
    
        self.cert_verify(conn, request.url, verify, cert)
        url = self.request_url(request, proxies)
        self.add_headers(request, stream=stream, timeout=timeout, verify=verify, cert=cert, proxies=proxies)
    
        chunked = not (request.body is None or 'Content-Length' in request.headers)
    
        if isinstance(timeout, tuple):
            try:
                connect, read = timeout
                timeout = TimeoutSauce(connect=connect, read=read)
            except ValueError as e:
                # this may raise a string formatting error.
                err = ("Invalid timeout {}. Pass a (connect, read) "
                       "timeout tuple, or a single float to set "
                       "both timeouts to the same value".format(timeout))
                raise ValueError(err)
        elif isinstance(timeout, TimeoutSauce):
            pass
        else:
            timeout = TimeoutSauce(connect=timeout, read=timeout)
    
        try:
            if not chunked:
>               resp = conn.urlopen(
                    method=request.method,
                    url=url,
                    body=request.body,
                    headers=request.headers,
                    redirect=False,
                    assert_same_host=False,
                    preload_content=False,
                    decode_content=False,
                    retries=self.max_retries,
                    timeout=timeout
                )

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/adapters.py:439: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754acba940>
method = 'POST'
url = '/api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf'
body = b'{"query": {"term": {"item.curie": "10.26275/mlua-o9oj"}}}'
headers = {'User-Agent': 'python-requests/2.25.1', 'Accept-Encoding': 'gzip, deflate', 'Accept': '*/*', 'Connection': 'keep-alive', 'Content-Length': '57', 'Content-Type': 'application/json'}
retries = Retry(total=0, connect=None, read=False, redirect=None, status=None)
redirect = False, assert_same_host = False
timeout = Timeout(connect=None, read=None, total=None), pool_timeout = None
release_conn = False, chunked = False, body_pos = None
response_kw = {'decode_content': False, 'preload_content': False}
parsed_url = Url(scheme=None, auth=None, host=None, port=None, path='/api/1/elastic/SPARC_PortalDatasets_dev/_search', query='api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf', fragment=None)
destination_scheme = None, conn = None, release_this_conn = True
http_tunnel_required = False, err = None, clean_exit = False

    def urlopen(
        self,
        method,
        url,
        body=None,
        headers=None,
        retries=None,
        redirect=True,
        assert_same_host=True,
        timeout=_Default,
        pool_timeout=None,
        release_conn=None,
        chunked=False,
        body_pos=None,
        **response_kw
    ):
        """
        Get a connection from the pool and perform an HTTP request. This is the
        lowest level call for making a request, so you'll need to specify all
        the raw details.
    
        .. note::
    
           More commonly, it's appropriate to use a convenience method provided
           by :class:`.RequestMethods`, such as :meth:`request`.
    
        .. note::
    
           `release_conn` will only behave as expected if
           `preload_content=False` because we want to make
           `preload_content=False` the default behaviour someday soon without
           breaking backwards compatibility.
    
        :param method:
            HTTP request method (such as GET, POST, PUT, etc.)
    
        :param url:
            The URL to perform the request on.
    
        :param body:
            Data to send in the request body, either :class:`str`, :class:`bytes`,
            an iterable of :class:`str`/:class:`bytes`, or a file-like object.
    
        :param headers:
            Dictionary of custom headers to send, such as User-Agent,
            If-None-Match, etc. If None, pool headers are used. If provided,
            these headers completely replace any pool-specific headers.
    
        :param retries:
            Configure the number of retries to allow before raising a
            :class:`~urllib3.exceptions.MaxRetryError` exception.
    
            Pass ``None`` to retry until you receive a response. Pass a
            :class:`~urllib3.util.retry.Retry` object for fine-grained control
            over different types of retries.
            Pass an integer number to retry connection errors that many times,
            but no other types of errors. Pass zero to never retry.
    
            If ``False``, then retries are disabled and any exception is raised
            immediately. Also, instead of raising a MaxRetryError on redirects,
            the redirect response will be returned.
    
        :type retries: :class:`~urllib3.util.retry.Retry`, False, or an int.
    
        :param redirect:
            If True, automatically handle redirects (status codes 301, 302,
            303, 307, 308). Each redirect counts as a retry. Disabling retries
            will disable redirect, too.
    
        :param assert_same_host:
            If ``True``, will make sure that the host of the pool requests is
            consistent else will raise HostChangedError. When ``False``, you can
            use the pool on an HTTP proxy and request foreign hosts.
    
        :param timeout:
            If specified, overrides the default timeout for this one
            request. It may be a float (in seconds) or an instance of
            :class:`urllib3.util.Timeout`.
    
        :param pool_timeout:
            If set and the pool is set to block=True, then this method will
            block for ``pool_timeout`` seconds and raise EmptyPoolError if no
            connection is available within the time period.
    
        :param release_conn:
            If False, then the urlopen call will not release the connection
            back into the pool once a response is received (but will release if
            you read the entire contents of the response such as when
            `preload_content=True`). This is useful if you're not preloading
            the response's content immediately. You will need to call
            ``r.release_conn()`` on the response ``r`` to return the connection
            back into the pool. If None, it takes the value of
            ``response_kw.get('preload_content', True)``.
    
        :param chunked:
            If True, urllib3 will send the body using chunked transfer
            encoding. Otherwise, urllib3 will send the body using the standard
            content-length form. Defaults to False.
    
        :param int body_pos:
            Position to seek to in file-like body in the event of a retry or
            redirect. Typically this won't need to be set because urllib3 will
            auto-populate the value when needed.
    
        :param \\**response_kw:
            Additional parameters are passed to
            :meth:`urllib3.response.HTTPResponse.from_httplib`
        """
    
        parsed_url = parse_url(url)
        destination_scheme = parsed_url.scheme
    
        if headers is None:
            headers = self.headers
    
        if not isinstance(retries, Retry):
            retries = Retry.from_int(retries, redirect=redirect, default=self.retries)
    
        if release_conn is None:
            release_conn = response_kw.get("preload_content", True)
    
        # Check host
        if assert_same_host and not self.is_same_host(url):
            raise HostChangedError(self, url, retries)
    
        # Ensure that the URL we're connecting to is properly encoded
        if url.startswith("/"):
            url = six.ensure_str(_encode_target(url))
        else:
            url = six.ensure_str(parsed_url.url)
    
        conn = None
    
        # Track whether `conn` needs to be released before
        # returning/raising/recursing. Update this variable if necessary, and
        # leave `release_conn` constant throughout the function. That way, if
        # the function recurses, the original value of `release_conn` will be
        # passed down into the recursive call, and its value will be respected.
        #
        # See issue #651 [1] for details.
        #
        # [1] <https://github.com/urllib3/urllib3/issues/651>
        release_this_conn = release_conn
    
        http_tunnel_required = connection_requires_http_tunnel(
            self.proxy, self.proxy_config, destination_scheme
        )
    
        # Merge the proxy headers. Only done when not using HTTP CONNECT. We
        # have to copy the headers dict so we can safely change it without those
        # changes being reflected in anyone else's copy.
        if not http_tunnel_required:
            headers = headers.copy()
            headers.update(self.proxy_headers)
    
        # Must keep the exception bound to a separate variable or else Python 3
        # complains about UnboundLocalError.
        err = None
    
        # Keep track of whether we cleanly exited the except block. This
        # ensures we do proper cleanup in finally.
        clean_exit = False
    
        # Rewind body position, if needed. Record current position
        # for future rewinds in the event of a redirect/retry.
        body_pos = set_file_position(body, body_pos)
    
        try:
            # Request a connection from the queue.
            timeout_obj = self._get_timeout(timeout)
            conn = self._get_conn(timeout=pool_timeout)
    
            conn.timeout = timeout_obj.connect_timeout
    
            is_new_proxy_conn = self.proxy is not None and not getattr(
                conn, "sock", None
            )
            if is_new_proxy_conn and http_tunnel_required:
                self._prepare_proxy(conn)
    
            # Make the request on the httplib connection object.
            httplib_response = self._make_request(
                conn,
                method,
                url,
                timeout=timeout_obj,
                body=body,
                headers=headers,
                chunked=chunked,
            )
    
            # If we're going to release the connection in ``finally:``, then
            # the response doesn't need to know about the connection. Otherwise
            # it will also try to release it and we'll have a double-release
            # mess.
            response_conn = conn if not release_conn else None
    
            # Pass method to Response for length checking
            response_kw["request_method"] = method
    
            # Import httplib's response into our own wrapper object
            response = self.ResponseCls.from_httplib(
                httplib_response,
                pool=self,
                connection=response_conn,
                retries=retries,
                **response_kw
            )
    
            # Everything went great!
            clean_exit = True
    
        except EmptyPoolError:
            # Didn't get a connection from the pool, no need to clean up
            clean_exit = True
            release_this_conn = False
            raise
    
        except (
            TimeoutError,
            HTTPException,
            SocketError,
            ProtocolError,
            BaseSSLError,
            SSLError,
            CertificateError,
        ) as e:
            # Discard the connection for these exceptions. It will be
            # replaced during the next _get_conn() call.
            clean_exit = False
            if isinstance(e, (BaseSSLError, CertificateError)):
                e = SSLError(e)
            elif isinstance(e, (SocketError, NewConnectionError)) and self.proxy:
                e = ProxyError("Cannot connect to proxy.", e)
            elif isinstance(e, (SocketError, HTTPException)):
                e = ProtocolError("Connection aborted.", e)
    
>           retries = retries.increment(
                method, url, error=e, _pool=self, _stacktrace=sys.exc_info()[2]
            )

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py:755: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = Retry(total=0, connect=None, read=False, redirect=None, status=None)
method = 'POST'
url = '/api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf'
response = None
error = NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7f754a87e6a0>: Failed to establish a new connection: [Errno 110] Connection timed out')
_pool = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7f754acba940>
_stacktrace = <traceback object at 0x7f754a288b80>

    def increment(
        self,
        method=None,
        url=None,
        response=None,
        error=None,
        _pool=None,
        _stacktrace=None,
    ):
        """Return a new Retry object with incremented retry counters.
    
        :param response: A response object, or None, if the server did not
            return a response.
        :type response: :class:`~urllib3.response.HTTPResponse`
        :param Exception error: An error encountered during the request, or
            None if the response was received successfully.
    
        :return: A new ``Retry`` object.
        """
        if self.total is False and error:
            # Disabled, indicate to re-raise the error.
            raise six.reraise(type(error), error, _stacktrace)
    
        total = self.total
        if total is not None:
            total -= 1
    
        connect = self.connect
        read = self.read
        redirect = self.redirect
        status_count = self.status
        other = self.other
        cause = "unknown"
        status = None
        redirect_location = None
    
        if error and self._is_connection_error(error):
            # Connect retry?
            if connect is False:
                raise six.reraise(type(error), error, _stacktrace)
            elif connect is not None:
                connect -= 1
    
        elif error and self._is_read_error(error):
            # Read retry?
            if read is False or not self._is_method_retryable(method):
                raise six.reraise(type(error), error, _stacktrace)
            elif read is not None:
                read -= 1
    
        elif error:
            # Other retry?
            if other is not None:
                other -= 1
    
        elif response and response.get_redirect_location():
            # Redirect retry?
            if redirect is not None:
                redirect -= 1
            cause = "too many redirects"
            redirect_location = response.get_redirect_location()
            status = response.status
    
        else:
            # Incrementing because of a server error like a 500 in
            # status_forcelist and the given method is in the allowed_methods
            cause = ResponseError.GENERIC_ERROR
            if response and response.status:
                if status_count is not None:
                    status_count -= 1
                cause = ResponseError.SPECIFIC_ERROR.format(status_code=response.status)
                status = response.status
    
        history = self.history + (
            RequestHistory(method, url, error, status, redirect_location),
        )
    
        new_retry = self.new(
            total=total,
            connect=connect,
            read=read,
            redirect=redirect,
            status=status_count,
            other=other,
            history=history,
        )
    
        if new_retry.is_exhausted():
>           raise MaxRetryError(_pool, url, error or ResponseError(cause))
E           urllib3.exceptions.MaxRetryError: HTTPSConnectionPool(host='scicrunch.org', port=443): Max retries exceeded with url: /api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7f754a87e6a0>: Failed to establish a new connection: [Errno 110] Connection timed out'))

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/util/retry.py:574: MaxRetryError

During handling of the above exception, another exception occurred:

client = <FlaskClient <Flask 'app.main'>>

    def test_undefined_version_dataset_search(client):
        # Testing with dataset 17 which is not versioned
        identifier = "17"
        doi = "10.26275/mlua-o9oj"
>       r = client.get('/dataset_info/using_doi', query_string={'doi': doi})

tests/test_scicrunch.py:525: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/werkzeug/test.py:1029: in get
    return self.open(*args, **kw)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/testing.py:222: in open
    return Client.open(
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/werkzeug/test.py:993: in open
    response = self.run_wsgi_app(environ.copy(), buffered=buffered)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/werkzeug/test.py:884: in run_wsgi_app
    rv = run_wsgi_app(self.application, environ, buffered=buffered)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/werkzeug/test.py:1119: in run_wsgi_app
    app_rv = app(environ, start_response)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:2463: in __call__
    return self.wsgi_app(environ, start_response)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:2449: in wsgi_app
    response = self.handle_exception(e)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask_cors/extension.py:161: in wrapped_function
    return cors_after_request(app.make_response(f(*args, **kwargs)))
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1866: in handle_exception
    reraise(exc_type, exc_value, tb)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/_compat.py:39: in reraise
    raise value
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:2446: in wsgi_app
    response = self.full_dispatch_request()
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1951: in full_dispatch_request
    rv = self.handle_user_exception(e)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask_cors/extension.py:161: in wrapped_function
    return cors_after_request(app.make_response(f(*args, **kwargs)))
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1820: in handle_user_exception
    reraise(exc_type, exc_value, tb)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/_compat.py:39: in reraise
    raise value
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1949: in full_dispatch_request
    rv = self.dispatch_request()
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py:1935: in dispatch_request
    return self.view_functions[rule.endpoint](**req.view_args)
app/main.py:539: in get_dataset_info_doi
    return reform_dataset_results(dataset_search(query))
app/main.py:663: in dataset_search
    response = requests.post(f'{Config.SCI_CRUNCH_HOST}/_search',
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/api.py:119: in post
    return request('post', url, data=data, json=json, **kwargs)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/api.py:61: in request
    return session.request(method=method, url=url, **kwargs)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/sessions.py:542: in request
    resp = self.send(prep, **send_kwargs)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/sessions.py:655: in send
    r = adapter.send(request, **kwargs)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

self = <requests.adapters.HTTPAdapter object at 0x7f754acba670>
request = <PreparedRequest [POST]>, stream = False
timeout = Timeout(connect=None, read=None, total=None), verify = True
cert = None, proxies = OrderedDict()

    def send(self, request, stream=False, timeout=None, verify=True, cert=None, proxies=None):
        """Sends PreparedRequest object. Returns Response object.
    
        :param request: The :class:`PreparedRequest <PreparedRequest>` being sent.
        :param stream: (optional) Whether to stream the request content.
        :param timeout: (optional) How long to wait for the server to send
            data before giving up, as a float, or a :ref:`(connect timeout,
            read timeout) <timeouts>` tuple.
        :type timeout: float or tuple or urllib3 Timeout object
        :param verify: (optional) Either a boolean, in which case it controls whether
            we verify the server's TLS certificate, or a string, in which case it
            must be a path to a CA bundle to use
        :param cert: (optional) Any user-provided SSL certificate to be trusted.
        :param proxies: (optional) The proxies dictionary to apply to the request.
        :rtype: requests.Response
        """
    
        try:
            conn = self.get_connection(request.url, proxies)
        except LocationValueError as e:
            raise InvalidURL(e, request=request)
    
        self.cert_verify(conn, request.url, verify, cert)
        url = self.request_url(request, proxies)
        self.add_headers(request, stream=stream, timeout=timeout, verify=verify, cert=cert, proxies=proxies)
    
        chunked = not (request.body is None or 'Content-Length' in request.headers)
    
        if isinstance(timeout, tuple):
            try:
                connect, read = timeout
                timeout = TimeoutSauce(connect=connect, read=read)
            except ValueError as e:
                # this may raise a string formatting error.
                err = ("Invalid timeout {}. Pass a (connect, read) "
                       "timeout tuple, or a single float to set "
                       "both timeouts to the same value".format(timeout))
                raise ValueError(err)
        elif isinstance(timeout, TimeoutSauce):
            pass
        else:
            timeout = TimeoutSauce(connect=timeout, read=timeout)
    
        try:
            if not chunked:
                resp = conn.urlopen(
                    method=request.method,
                    url=url,
                    body=request.body,
                    headers=request.headers,
                    redirect=False,
                    assert_same_host=False,
                    preload_content=False,
                    decode_content=False,
                    retries=self.max_retries,
                    timeout=timeout
                )
    
            # Send the request.
            else:
                if hasattr(conn, 'proxy_pool'):
                    conn = conn.proxy_pool
    
                low_conn = conn._get_conn(timeout=DEFAULT_POOL_TIMEOUT)
    
                try:
                    low_conn.putrequest(request.method,
                                        url,
                                        skip_accept_encoding=True)
    
                    for header, value in request.headers.items():
                        low_conn.putheader(header, value)
    
                    low_conn.endheaders()
    
                    for i in request.body:
                        low_conn.send(hex(len(i))[2:].encode('utf-8'))
                        low_conn.send(b'\r\n')
                        low_conn.send(i)
                        low_conn.send(b'\r\n')
                    low_conn.send(b'0\r\n\r\n')
    
                    # Receive the response from the server
                    try:
                        # For Python 2.7, use buffering of HTTP responses
                        r = low_conn.getresponse(buffering=True)
                    except TypeError:
                        # For compatibility with Python 3.3+
                        r = low_conn.getresponse()
    
                    resp = HTTPResponse.from_httplib(
                        r,
                        pool=conn,
                        connection=low_conn,
                        preload_content=False,
                        decode_content=False
                    )
                except:
                    # If we hit any problems here, clean up the connection.
                    # Then, reraise so that we can handle the actual exception.
                    low_conn.close()
                    raise
    
        except (ProtocolError, socket.error) as err:
            raise ConnectionError(err, request=request)
    
        except MaxRetryError as e:
            if isinstance(e.reason, ConnectTimeoutError):
                # TODO: Remove this in 3.0.0: see #2811
                if not isinstance(e.reason, NewConnectionError):
                    raise ConnectTimeout(e, request=request)
    
            if isinstance(e.reason, ResponseError):
                raise RetryError(e, request=request)
    
            if isinstance(e.reason, _ProxyError):
                raise ProxyError(e, request=request)
    
            if isinstance(e.reason, _SSLError):
                # This branch is for urllib3 v1.22 and later.
                raise SSLError(e, request=request)
    
>           raise ConnectionError(e, request=request)
E           requests.exceptions.ConnectionError: HTTPSConnectionPool(host='scicrunch.org', port=443): Max retries exceeded with url: /api/1/elastic/SPARC_PortalDatasets_dev/_search?api_key=xBOrIfnZTvJQtobGo8XHRvThdMYGTxtf (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7f754a87e6a0>: Failed to establish a new connection: [Errno 110] Connection timed out'))

../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/adapters.py:516: ConnectionError
=============================== warnings summary ===============================
/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/apscheduler/__init__.py:1
  /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/apscheduler/__init__.py:1: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html
    from pkg_resources import get_distribution, DistributionNotFound

/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/marshmallow/__init__.py:17
  /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/marshmallow/__init__.py:17: DeprecationWarning: distutils Version classes are deprecated. Use packaging.version instead.
    __version_info__ = tuple(LooseVersion(__version__).version)

/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask_marshmallow/__init__.py:34
  /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask_marshmallow/__init__.py:34: DeprecationWarning: distutils Version classes are deprecated. Use packaging.version instead.
    __version_info__ = tuple(LooseVersion(__version__).version)

/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pennsieve/cache/cache_segment_pb2.py:19
  /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pennsieve/cache/cache_segment_pb2.py:19: DeprecationWarning: Call to deprecated create function FileDescriptor(). Note: Create unlinked descriptors is going to go away. Please use get/find descriptors from generated code or query the descriptor_pool.
    DESCRIPTOR = _descriptor.FileDescriptor(

/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pennsieve/cache/cache_segment_pb2.py:36
  /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pennsieve/cache/cache_segment_pb2.py:36: DeprecationWarning: Call to deprecated create function FieldDescriptor(). Note: Create unlinked descriptors is going to go away. Please use get/find descriptors from generated code or query the descriptor_pool.
    _descriptor.FieldDescriptor(

/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pennsieve/cache/cache_segment_pb2.py:53
  /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pennsieve/cache/cache_segment_pb2.py:53: DeprecationWarning: Call to deprecated create function FieldDescriptor(). Note: Create unlinked descriptors is going to go away. Please use get/find descriptors from generated code or query the descriptor_pool.
    _descriptor.FieldDescriptor(

/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pennsieve/cache/cache_segment_pb2.py:70
  /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pennsieve/cache/cache_segment_pb2.py:70: DeprecationWarning: Call to deprecated create function FieldDescriptor(). Note: Create unlinked descriptors is going to go away. Please use get/find descriptors from generated code or query the descriptor_pool.
    _descriptor.FieldDescriptor(

/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pennsieve/cache/cache_segment_pb2.py:29
  /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pennsieve/cache/cache_segment_pb2.py:29: DeprecationWarning: Call to deprecated create function Descriptor(). Note: Create unlinked descriptors is going to go away. Please use get/find descriptors from generated code or query the descriptor_pool.
    _CACHESEGMENT = _descriptor.Descriptor(

/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/nose/importer.py:12
  /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/nose/importer.py:12: DeprecationWarning: the imp module is deprecated in favour of importlib; see the module's documentation for alternative uses
    from imp import find_module, load_module, acquire_lock, release_lock

tests/test_health.py::test_request_response
  /home/cmiss/Jenkins/workspace/SPARC-API-DEV/tests/test_health.py:13: DeprecationWarning: Please use assertEqual instead.
    assert_equals("healthy", json_response.get("status"))

-- Docs: https://docs.pytest.org/en/latest/warnings.html
=========================== short test summary info ============================
FAILED tests/test_api.py::test_onto_term_lookup - requests.exceptions.Connect...
FAILED tests/test_api.py::test_non_existing_simulation_ui_file - requests.exc...
FAILED tests/test_api.py::test_simulation_ui_file_old_s3_bucket - requests.ex...
FAILED tests/test_api.py::test_simulation_ui_file_new_s3_bucket - requests.ex...
FAILED tests/test_dataset_info.py::test_current_doi_list - requests.exception...
FAILED tests/test_dataset_info.py::test_generic_mouse_colon_dataset_search - ...
FAILED tests/test_dataset_info.py::test_complex_title_dataset_search - reques...
FAILED tests/test_dataset_info.py::test_title_plot_annotation_dataset_search
FAILED tests/test_dataset_info.py::test_object_identifier_dataset_search - re...
FAILED tests/test_dataset_info.py::test_pennsieve_identifier_dataset_search
FAILED tests/test_scicrunch.py::test_scicrunch_keys - requests.exceptions.Con...
FAILED tests/test_scicrunch.py::test_scicrunch_versions_are_supported - reque...
FAILED tests/test_scicrunch.py::test_scicrunch_dataset_doi - requests.excepti...
FAILED tests/test_scicrunch.py::test_scicrunch_multiple_dataset_doi - request...
FAILED tests/test_scicrunch.py::test_scicrunch_multiple_dataset_ids - request...
FAILED tests/test_scicrunch.py::test_scicrunch_search - requests.exceptions.C...
FAILED tests/test_scicrunch.py::test_scicrunch_all_data - requests.exceptions...
FAILED tests/test_scicrunch.py::test_scicrunch_filter - requests.exceptions.C...
FAILED tests/test_scicrunch.py::test_scicrunch_filter_scaffolds - requests.ex...
FAILED tests/test_scicrunch.py::test_scicrunch_basic_search - requests.except...
FAILED tests/test_scicrunch.py::test_scicrunch_image_search - requests.except...
FAILED tests/test_scicrunch.py::test_scicrunch_boolean_logic - requests.excep...
FAILED tests/test_scicrunch.py::test_scicrunch_combined_facet_text - requests...
FAILED tests/test_scicrunch.py::test_getting_facets - requests.exceptions.Con...
FAILED tests/test_scicrunch.py::test_create_identifier_query - requests.excep...
FAILED tests/test_scicrunch.py::test_create_anatomy_query - requests.exceptio...
FAILED tests/test_scicrunch.py::test_response_version - requests.exceptions.C...
FAILED tests/test_scicrunch.py::test_response_abi_plot - requests.exceptions....
FAILED tests/test_scicrunch.py::test_response_abi_scaffold - requests.excepti...
FAILED tests/test_scicrunch.py::test_response_sample_subject_size - requests....
FAILED tests/test_scicrunch.py::test_raw_response_structure - requests.except...
FAILED tests/test_scicrunch.py::test_get_body_scaffold_info - requests.except...
FAILED tests/test_scicrunch.py::test_getting_curies - requests.exceptions.Con...
FAILED tests/test_scicrunch.py::test_get_related_terms - requests.exceptions....
FAILED tests/test_scicrunch.py::test_scaffold_files - requests.exceptions.Con...
FAILED tests/test_scicrunch.py::test_finding_contextual_information - request...
FAILED tests/test_scicrunch.py::test_undefined_version_dataset_search - reque...
====== 37 failed, 66 passed, 3 skipped, 10 warnings in 4977.89s (1:22:57) ======
Build step 'Virtualenv Builder' marked build as failure
[Slack Notifications] found #939 as previous completed, non-aborted build
[Slack Notifications] will send OnEveryFailureNotification because build matches and user preferences allow it
Finished: FAILURE