Started by timer
Running as SYSTEM
Building remotely on Ubuntu_18.04_bioeng49 (buildslave Testing) in workspace /home/cmiss/Jenkins/workspace/SPARC-API-DEV
[WS-CLEANUP] Deleting project workspace...
[WS-CLEANUP] Deferred wipeout is used...
[WS-CLEANUP] Done
The recommended git tool is: NONE
No credentials specified
Cloning the remote Git repository
Cloning repository https://github.com/nih-sparc/sparc-api.git
> git init /home/cmiss/Jenkins/workspace/SPARC-API-DEV # timeout=10
Fetching upstream changes from https://github.com/nih-sparc/sparc-api.git
> git --version # timeout=10
> git --version # 'git version 2.25.1'
> git fetch --tags --force --progress -- https://github.com/nih-sparc/sparc-api.git +refs/heads/*:refs/remotes/origin/* # timeout=10
> git config remote.origin.url https://github.com/nih-sparc/sparc-api.git # timeout=10
> git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10
Avoid second fetch
> git rev-parse refs/remotes/origin/master^{commit} # timeout=10
Checking out Revision 7fcf43fec971e7e094a9e5cfd8eea8f257c0c626 (refs/remotes/origin/master)
> git config core.sparsecheckout # timeout=10
> git checkout -f 7fcf43fec971e7e094a9e5cfd8eea8f257c0c626 # timeout=10
Commit message: "Merge pull request #256 from nih-sparc/process-all-events-instead-of-only-the-first-one-in-a-batch"
> git rev-list --no-walk 7fcf43fec971e7e094a9e5cfd8eea8f257c0c626 # timeout=10
[SPARC-API-DEV] $ /bin/sh -xe /tmp/shiningpanda171725063592277633.sh
+ pwd
+ export PYTHONPATH=/home/cmiss/Jenkins/workspace/SPARC-API-DEV
+ export SCICRUNCH_HOST=https://scicrunch.org/api/1/elastic/SPARC_PortalDatasets_dev
+ export PROTOCOL_BUFFERS_PYTHON_IMPLEMENTATION=python
+ pip install -r requirements.txt
Requirement already satisfied: algoliasearch==2.6.2 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 1)) (2.6.2)
Requirement already satisfied: api==0.0.7 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 2)) (0.0.7)
Requirement already satisfied: APScheduler==3.7.0 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 3)) (3.7.0)
Requirement already satisfied: boto3==1.26 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 4)) (1.26.0)
Requirement already satisfied: botocore==1.29.0 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 5)) (1.29.0)
Requirement already satisfied: certifi==2023.5.7 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 6)) (2023.5.7)
Requirement already satisfied: chardet==3.0.4 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 7)) (3.0.4)
Collecting Click==7.1.2 (from -r requirements.txt (line 8))
Using cached click-7.1.2-py2.py3-none-any.whl.metadata (2.9 kB)
Requirement already satisfied: contentful==1.13.1 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 9)) (1.13.1)
Requirement already satisfied: contentful_management==2.11.0 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 10)) (2.11.0)
Requirement already satisfied: docutils==0.15.2 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 11)) (0.15.2)
Requirement already satisfied: Flask==1.1.1 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 12)) (1.1.1)
Requirement already satisfied: Flask-Caching==2.3.0 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 13)) (2.3.0)
Requirement already satisfied: Flask-Cors==3.0.8 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 14)) (3.0.8)
Requirement already satisfied: flask-marshmallow==0.10.1 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 15)) (0.10.1)
Requirement already satisfied: google-api-python-client==2.52.0 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 16)) (2.52.0)
Requirement already satisfied: gunicorn==20.0.4 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 17)) (20.0.4)
Requirement already satisfied: hubspot-api-client==9.0.0 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 18)) (9.0.0)
Requirement already satisfied: idna==2.8 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 19)) (2.8)
Requirement already satisfied: itsdangerous==1.1.0 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 20)) (1.1.0)
Requirement already satisfied: Jinja2==2.11.3 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 21)) (2.11.3)
Requirement already satisfied: jmespath==0.9.4 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 22)) (0.9.4)
Requirement already satisfied: MarkupSafe==1.1.1 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 23)) (1.1.1)
Requirement already satisfied: marshmallow==3.2.2 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 24)) (3.2.2)
Requirement already satisfied: nose==1.3.7 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 25)) (1.3.7)
Requirement already satisfied: oauth2client==4.1.3 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 26)) (4.1.3)
Requirement already satisfied: osparc==0.4.3 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 27)) (0.4.3)
Requirement already satisfied: Pennsieve==6.1.1 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 28)) (6.1.1)
Requirement already satisfied: Pennsieve2==0.1.2 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 29)) (0.1.2)
Requirement already satisfied: Pillow in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 30)) (11.0.0)
Requirement already satisfied: psycopg2-binary==2.9.9 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 31)) (2.9.9)
Requirement already satisfied: public==2019.4.13 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 32)) (2019.4.13)
Requirement already satisfied: pytest in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 33)) (5.4.3)
Requirement already satisfied: pymongo==3.8.0 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 34)) (3.8.0)
Requirement already satisfied: python-dateutil==2.8.2 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 35)) (2.8.2)
Requirement already satisfied: python-dotenv==0.10.3 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 36)) (0.10.3)
Requirement already satisfied: query-string==2019.4.13 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 37)) (2019.4.13)
Requirement already satisfied: requests==2.31.0 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 38)) (2.31.0)
Requirement already satisfied: s3transfer==0.6.0 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 39)) (0.6.0)
Requirement already satisfied: sendgrid==6.9.7 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 40)) (6.9.7)
Requirement already satisfied: six==1.13.0 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 41)) (1.13.0)
Requirement already satisfied: SQLAlchemy==1.3.20 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 42)) (1.3.20)
Requirement already satisfied: urllib3==1.26.4 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 43)) (1.26.4)
Requirement already satisfied: Werkzeug==0.16.0 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements.txt (line 44)) (0.16.0)
Requirement already satisfied: setuptools>=0.7 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from APScheduler==3.7.0->-r requirements.txt (line 3)) (75.6.0)
Requirement already satisfied: pytz in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from APScheduler==3.7.0->-r requirements.txt (line 3)) (2024.2)
Requirement already satisfied: tzlocal~=2.0 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from APScheduler==3.7.0->-r requirements.txt (line 3)) (2.1)
Requirement already satisfied: cachelib<0.10.0,>=0.9.0 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from Flask-Caching==2.3.0->-r requirements.txt (line 13)) (0.9.0)
Requirement already satisfied: httplib2<1dev,>=0.15.0 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from google-api-python-client==2.52.0->-r requirements.txt (line 16)) (0.22.0)
Requirement already satisfied: google-auth<3.0.0dev,>=1.19.0 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from google-api-python-client==2.52.0->-r requirements.txt (line 16)) (2.36.0)
Requirement already satisfied: google-auth-httplib2>=0.1.0 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from google-api-python-client==2.52.0->-r requirements.txt (line 16)) (0.2.0)
Requirement already satisfied: google-api-core!=2.0.*,!=2.1.*,!=2.2.*,!=2.3.0,<3.0.0dev,>=1.31.5 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from google-api-python-client==2.52.0->-r requirements.txt (line 16)) (2.23.0)
Requirement already satisfied: uritemplate<5,>=3.0.1 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from google-api-python-client==2.52.0->-r requirements.txt (line 16)) (4.1.1)
Requirement already satisfied: pyasn1>=0.1.7 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from oauth2client==4.1.3->-r requirements.txt (line 26)) (0.6.1)
Requirement already satisfied: pyasn1-modules>=0.0.5 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from oauth2client==4.1.3->-r requirements.txt (line 26)) (0.4.1)
Requirement already satisfied: rsa>=3.1.4 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from oauth2client==4.1.3->-r requirements.txt (line 26)) (4.0)
Requirement already satisfied: configparser>=3.5 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from Pennsieve==6.1.1->-r requirements.txt (line 28)) (7.1.0)
Requirement already satisfied: deprecated>=1.2.0 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from Pennsieve==6.1.1->-r requirements.txt (line 28)) (1.2.15)
Requirement already satisfied: future>=0.15.0 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from Pennsieve==6.1.1->-r requirements.txt (line 28)) (1.0.0)
Requirement already satisfied: futures in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from Pennsieve==6.1.1->-r requirements.txt (line 28)) (3.0.5)
Requirement already satisfied: protobuf>=3.2.0 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from Pennsieve==6.1.1->-r requirements.txt (line 28)) (4.25.5)
Requirement already satisfied: python-jose==3.2.0 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from Pennsieve==6.1.1->-r requirements.txt (line 28)) (3.2.0)
Requirement already satisfied: semver>=2.8.0 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from Pennsieve==6.1.1->-r requirements.txt (line 28)) (3.0.2)
Requirement already satisfied: websocket-client>=0.57.0 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from Pennsieve==6.1.1->-r requirements.txt (line 28)) (1.8.0)
Requirement already satisfied: docopt>=0.6 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from Pennsieve==6.1.1->-r requirements.txt (line 28)) (0.6.2)
Requirement already satisfied: psutil>=5.4 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from Pennsieve==6.1.1->-r requirements.txt (line 28)) (6.1.0)
Requirement already satisfied: grpcio<2.0,>=1.51 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from Pennsieve2==0.1.2->-r requirements.txt (line 29)) (1.69.0)
Requirement already satisfied: grpcio_tools<2.0,>=1.51 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from Pennsieve2==0.1.2->-r requirements.txt (line 29)) (1.62.3)
Requirement already satisfied: pyjwt<3.0,>=2.6 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from Pennsieve2==0.1.2->-r requirements.txt (line 29)) (2.10.1)
Requirement already satisfied: tqdm<5.0,>=4.64 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from Pennsieve2==0.1.2->-r requirements.txt (line 29)) (4.67.1)
Requirement already satisfied: charset-normalizer<4,>=2 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from requests==2.31.0->-r requirements.txt (line 38)) (3.4.0)
Requirement already satisfied: python-http-client>=3.2.1 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from sendgrid==6.9.7->-r requirements.txt (line 40)) (3.3.7)
Requirement already satisfied: starkbank-ecdsa>=2.0.1 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from sendgrid==6.9.7->-r requirements.txt (line 40)) (2.2.0)
Requirement already satisfied: ecdsa<0.15 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from python-jose==3.2.0->Pennsieve==6.1.1->-r requirements.txt (line 28)) (0.14.1)
Requirement already satisfied: py>=1.5.0 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from pytest->-r requirements.txt (line 33)) (1.11.0)
Requirement already satisfied: packaging in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from pytest->-r requirements.txt (line 33)) (24.2)
Requirement already satisfied: attrs>=17.4.0 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from pytest->-r requirements.txt (line 33)) (24.2.0)
Requirement already satisfied: more-itertools>=4.0.0 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from pytest->-r requirements.txt (line 33)) (10.5.0)
Requirement already satisfied: pluggy<1.0,>=0.12 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from pytest->-r requirements.txt (line 33)) (0.13.1)
Requirement already satisfied: wcwidth in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from pytest->-r requirements.txt (line 33)) (0.2.13)
Requirement already satisfied: wrapt<2,>=1.10 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from deprecated>=1.2.0->Pennsieve==6.1.1->-r requirements.txt (line 28)) (1.17.0)
Requirement already satisfied: googleapis-common-protos<2.0.dev0,>=1.56.2 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from google-api-core!=2.0.*,!=2.1.*,!=2.2.*,!=2.3.0,<3.0.0dev,>=1.31.5->google-api-python-client==2.52.0->-r requirements.txt (line 16)) (1.66.0)
Requirement already satisfied: proto-plus<2.0.0dev,>=1.22.3 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from google-api-core!=2.0.*,!=2.1.*,!=2.2.*,!=2.3.0,<3.0.0dev,>=1.31.5->google-api-python-client==2.52.0->-r requirements.txt (line 16)) (1.25.0)
Requirement already satisfied: cachetools<6.0,>=2.0.0 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from google-auth<3.0.0dev,>=1.19.0->google-api-python-client==2.52.0->-r requirements.txt (line 16)) (5.5.0)
Requirement already satisfied: pyparsing!=3.0.0,!=3.0.1,!=3.0.2,!=3.0.3,<4,>=2.4.2 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from httplib2<1dev,>=0.15.0->google-api-python-client==2.52.0->-r requirements.txt (line 16)) (3.2.0)
Using cached click-7.1.2-py2.py3-none-any.whl (82 kB)
Installing collected packages: Click
Attempting uninstall: Click
Found existing installation: click 8.1.8
Uninstalling click-8.1.8:
Successfully uninstalled click-8.1.8
ERROR: pip's dependency resolver does not currently take into account all the packages that are installed. This behaviour is the source of the following dependency conflicts.
black 24.10.0 requires click>=8.0.0, but you have click 7.1.2 which is incompatible.
Successfully installed Click-7.1.2
[notice] A new release of pip is available: 24.3.1 -> 25.0.1
[notice] To update, run: pip install --upgrade pip
+ pip install -r requirements-dev.txt
Requirement already satisfied: pytest==5.4.3 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements-dev.txt (line 1)) (5.4.3)
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Requirement already satisfied: black in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements-dev.txt (line 3)) (24.10.0)
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Requirement already satisfied: nose in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from -r requirements-dev.txt (line 5)) (1.3.7)
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Requirement already satisfied: more-itertools>=4.0.0 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from pytest==5.4.3->-r requirements-dev.txt (line 1)) (10.5.0)
Requirement already satisfied: pluggy<1.0,>=0.12 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from pytest==5.4.3->-r requirements-dev.txt (line 1)) (0.13.1)
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Requirement already satisfied: boto3 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from pennsieve==6.1.1->-r requirements-dev.txt (line 2)) (1.26.0)
Requirement already satisfied: configparser>=3.5 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from pennsieve==6.1.1->-r requirements-dev.txt (line 2)) (7.1.0)
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Requirement already satisfied: futures in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from pennsieve==6.1.1->-r requirements-dev.txt (line 2)) (3.0.5)
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Requirement already satisfied: websocket-client>=0.57.0 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from pennsieve==6.1.1->-r requirements-dev.txt (line 2)) (1.8.0)
Requirement already satisfied: docopt>=0.6 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from pennsieve==6.1.1->-r requirements-dev.txt (line 2)) (0.6.2)
Requirement already satisfied: psutil>=5.4 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from pennsieve==6.1.1->-r requirements-dev.txt (line 2)) (6.1.0)
Requirement already satisfied: python-dateutil>=2.8.0 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from pennsieve==6.1.1->-r requirements-dev.txt (line 2)) (2.8.2)
Requirement already satisfied: six<2.0 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from python-jose==3.2.0->pennsieve==6.1.1->-r requirements-dev.txt (line 2)) (1.13.0)
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Collecting click>=8.0.0 (from black->-r requirements-dev.txt (line 3))
Using cached click-8.1.8-py3-none-any.whl.metadata (2.3 kB)
Requirement already satisfied: mypy-extensions>=0.4.3 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from black->-r requirements-dev.txt (line 3)) (1.0.0)
Requirement already satisfied: pathspec>=0.9.0 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from black->-r requirements-dev.txt (line 3)) (0.12.1)
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Requirement already satisfied: tomli>=1.1.0 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from black->-r requirements-dev.txt (line 3)) (2.2.1)
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Requirement already satisfied: idna<4,>=2.5 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from requests>=2.18->pennsieve==6.1.1->-r requirements-dev.txt (line 2)) (2.8)
Requirement already satisfied: urllib3<3,>=1.21.1 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from requests>=2.18->pennsieve==6.1.1->-r requirements-dev.txt (line 2)) (1.26.4)
Requirement already satisfied: certifi>=2017.4.17 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from requests>=2.18->pennsieve==6.1.1->-r requirements-dev.txt (line 2)) (2023.5.7)
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Requirement already satisfied: jmespath<2.0.0,>=0.7.1 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from boto3->pennsieve==6.1.1->-r requirements-dev.txt (line 2)) (0.9.4)
Requirement already satisfied: s3transfer<0.7.0,>=0.6.0 in /home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages (from boto3->pennsieve==6.1.1->-r requirements-dev.txt (line 2)) (0.6.0)
Using cached click-8.1.8-py3-none-any.whl (98 kB)
Installing collected packages: click
Attempting uninstall: click
Found existing installation: click 7.1.2
Uninstalling click-7.1.2:
Successfully uninstalled click-7.1.2
Successfully installed click-8.1.8
[notice] A new release of pip is available: 24.3.1 -> 25.0.1
[notice] To update, run: pip install --upgrade pip
+ pytest
============================= test session starts ==============================
platform linux -- Python 3.9.21, pytest-5.4.3, py-1.11.0, pluggy-0.13.1
rootdir: /home/cmiss/Jenkins/workspace/SPARC-API-DEV
collected 116 items
tests/test_api.py .............F........... [ 21%]
tests/test_biolucida.py FFFFFFFF.F.FF [ 32%]
tests/test_dataset_info.py .s..ss..... [ 42%]
tests/test_health.py . [ 43%]
tests/test_monthly_stats.py ......... [ 50%]
tests/test_osparc.py .............. [ 62%]
tests/test_plot.py . [ 63%]
tests/test_pmr.py ......... [ 71%]
tests/test_scicrunch.py .................s......... [ 94%]
tests/test_segmentation_info.py .. [ 96%]
tests/test_thumbnails.py .FF [ 99%]
tests/test_update_contentful_entries.py . [100%]
=================================== FAILURES ===================================
_____________________________ test_hubspot_webhook _____________________________
client = <FlaskClient <Flask 'app.main'>>
def test_hubspot_webhook(client):
http_method = "POST"
endpoint = "/hubspot_webhook"
base_url = "http://localhost" # Default for Flask test client
full_url = f"{base_url}{endpoint}"
# mock a property changed event firing for test Hubspot contact
mock_body = '[{"subscriptionType":"contact.propertyChange","objectId":"83944215465"}]'
# The timestamp must be a Unix epoch time within 5 minutes (300 seconds) of the current time when the webhook request is received.
valid_timestamp = int(time.time())
# Concatenate the string as HubSpot does
data_to_sign = f'{http_method}{full_url}{mock_body}{valid_timestamp}'
# Generate the HMAC SHA256 signature
signature = hmac.new(
key=Config.HUBSPOT_CLIENT_SECRET.encode('utf-8'),
msg=data_to_sign.encode('utf-8'),
digestmod=hashlib.sha256
).digest()
# Encode the signature in Base64
mock_signature = base64.b64encode(signature).decode()
# Send a mock POST request
response = client.post(
endpoint,
json=mock_body,
headers={
"Content-Type": "application/json",
"X-HubSpot-Signature-Version": "v3",
"X-Hubspot-Signature-v3": mock_signature,
"X-HubSpot-Request-Timestamp": str(valid_timestamp),
}
)
> assert response.status_code == 200
E assert 400 == 200
E + where 400 = <Response streamed [400 BAD REQUEST]>.status_code
tests/test_api.py:210: AssertionError
----------------------------- Captured stderr call -----------------------------
ERROR:root:Expected an array of webhook events: [{"subscriptionType":"contact.propertyChange","objectId":"83944215465"}]
------------------------------ Captured log call -------------------------------
ERROR root:main.py:1633 Expected an array of webhook events: [{"subscriptionType":"contact.propertyChange","objectId":"83944215465"}]
_____________________ BiolucidaTestCase.test_authenticate ______________________
self = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7ffbe83e07f0>
method = 'POST', url = '/api/v1/authenticate'
body = 'username=therealmapcore&password=suckerforalltheimagesyoushow&token='
headers = {'User-Agent': 'python-requests/2.31.0', 'Accept-Encoding': 'gzip, deflate', 'Accept': '*/*', 'Connection': 'keep-alive', 'Content-Length': '68', 'Content-Type': 'application/x-www-form-urlencoded'}
retries = Retry(total=0, connect=None, read=False, redirect=None, status=None)
redirect = False, assert_same_host = False
timeout = Timeout(connect=None, read=None, total=None), pool_timeout = None
release_conn = False, chunked = False, body_pos = None
response_kw = {'decode_content': False, 'preload_content': False}
parsed_url = Url(scheme=None, auth=None, host=None, port=None, path='/api/v1/authenticate', query=None, fragment=None)
destination_scheme = None, conn = None, release_this_conn = True
http_tunnel_required = False, err = None, clean_exit = False
def urlopen(
self,
method,
url,
body=None,
headers=None,
retries=None,
redirect=True,
assert_same_host=True,
timeout=_Default,
pool_timeout=None,
release_conn=None,
chunked=False,
body_pos=None,
**response_kw
):
"""
Get a connection from the pool and perform an HTTP request. This is the
lowest level call for making a request, so you'll need to specify all
the raw details.
.. note::
More commonly, it's appropriate to use a convenience method provided
by :class:`.RequestMethods`, such as :meth:`request`.
.. note::
`release_conn` will only behave as expected if
`preload_content=False` because we want to make
`preload_content=False` the default behaviour someday soon without
breaking backwards compatibility.
:param method:
HTTP request method (such as GET, POST, PUT, etc.)
:param url:
The URL to perform the request on.
:param body:
Data to send in the request body, either :class:`str`, :class:`bytes`,
an iterable of :class:`str`/:class:`bytes`, or a file-like object.
:param headers:
Dictionary of custom headers to send, such as User-Agent,
If-None-Match, etc. If None, pool headers are used. If provided,
these headers completely replace any pool-specific headers.
:param retries:
Configure the number of retries to allow before raising a
:class:`~urllib3.exceptions.MaxRetryError` exception.
Pass ``None`` to retry until you receive a response. Pass a
:class:`~urllib3.util.retry.Retry` object for fine-grained control
over different types of retries.
Pass an integer number to retry connection errors that many times,
but no other types of errors. Pass zero to never retry.
If ``False``, then retries are disabled and any exception is raised
immediately. Also, instead of raising a MaxRetryError on redirects,
the redirect response will be returned.
:type retries: :class:`~urllib3.util.retry.Retry`, False, or an int.
:param redirect:
If True, automatically handle redirects (status codes 301, 302,
303, 307, 308). Each redirect counts as a retry. Disabling retries
will disable redirect, too.
:param assert_same_host:
If ``True``, will make sure that the host of the pool requests is
consistent else will raise HostChangedError. When ``False``, you can
use the pool on an HTTP proxy and request foreign hosts.
:param timeout:
If specified, overrides the default timeout for this one
request. It may be a float (in seconds) or an instance of
:class:`urllib3.util.Timeout`.
:param pool_timeout:
If set and the pool is set to block=True, then this method will
block for ``pool_timeout`` seconds and raise EmptyPoolError if no
connection is available within the time period.
:param release_conn:
If False, then the urlopen call will not release the connection
back into the pool once a response is received (but will release if
you read the entire contents of the response such as when
`preload_content=True`). This is useful if you're not preloading
the response's content immediately. You will need to call
``r.release_conn()`` on the response ``r`` to return the connection
back into the pool. If None, it takes the value of
``response_kw.get('preload_content', True)``.
:param chunked:
If True, urllib3 will send the body using chunked transfer
encoding. Otherwise, urllib3 will send the body using the standard
content-length form. Defaults to False.
:param int body_pos:
Position to seek to in file-like body in the event of a retry or
redirect. Typically this won't need to be set because urllib3 will
auto-populate the value when needed.
:param \\**response_kw:
Additional parameters are passed to
:meth:`urllib3.response.HTTPResponse.from_httplib`
"""
parsed_url = parse_url(url)
destination_scheme = parsed_url.scheme
if headers is None:
headers = self.headers
if not isinstance(retries, Retry):
retries = Retry.from_int(retries, redirect=redirect, default=self.retries)
if release_conn is None:
release_conn = response_kw.get("preload_content", True)
# Check host
if assert_same_host and not self.is_same_host(url):
raise HostChangedError(self, url, retries)
# Ensure that the URL we're connecting to is properly encoded
if url.startswith("/"):
url = six.ensure_str(_encode_target(url))
else:
url = six.ensure_str(parsed_url.url)
conn = None
# Track whether `conn` needs to be released before
# returning/raising/recursing. Update this variable if necessary, and
# leave `release_conn` constant throughout the function. That way, if
# the function recurses, the original value of `release_conn` will be
# passed down into the recursive call, and its value will be respected.
#
# See issue #651 [1] for details.
#
# [1] <https://github.com/urllib3/urllib3/issues/651>
release_this_conn = release_conn
http_tunnel_required = connection_requires_http_tunnel(
self.proxy, self.proxy_config, destination_scheme
)
# Merge the proxy headers. Only done when not using HTTP CONNECT. We
# have to copy the headers dict so we can safely change it without those
# changes being reflected in anyone else's copy.
if not http_tunnel_required:
headers = headers.copy()
headers.update(self.proxy_headers)
# Must keep the exception bound to a separate variable or else Python 3
# complains about UnboundLocalError.
err = None
# Keep track of whether we cleanly exited the except block. This
# ensures we do proper cleanup in finally.
clean_exit = False
# Rewind body position, if needed. Record current position
# for future rewinds in the event of a redirect/retry.
body_pos = set_file_position(body, body_pos)
try:
# Request a connection from the queue.
timeout_obj = self._get_timeout(timeout)
conn = self._get_conn(timeout=pool_timeout)
conn.timeout = timeout_obj.connect_timeout
is_new_proxy_conn = self.proxy is not None and not getattr(
conn, "sock", None
)
if is_new_proxy_conn and http_tunnel_required:
self._prepare_proxy(conn)
# Make the request on the httplib connection object.
> httplib_response = self._make_request(
conn,
method,
url,
timeout=timeout_obj,
body=body,
headers=headers,
chunked=chunked,
)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py:699:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
self = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7ffbe83e07f0>
conn = <urllib3.connection.HTTPSConnection object at 0x7ffbe83e01f0>
method = 'POST', url = '/api/v1/authenticate'
timeout = Timeout(connect=None, read=None, total=None), chunked = False
httplib_request_kw = {'body': 'username=therealmapcore&password=suckerforalltheimagesyoushow&token=', 'headers': {'User-Agent': 'python-req...cept': '*/*', 'Connection': 'keep-alive', 'Content-Length': '68', 'Content-Type': 'application/x-www-form-urlencoded'}}
timeout_obj = Timeout(connect=None, read=None, total=None)
def _make_request(
self, conn, method, url, timeout=_Default, chunked=False, **httplib_request_kw
):
"""
Perform a request on a given urllib connection object taken from our
pool.
:param conn:
a connection from one of our connection pools
:param timeout:
Socket timeout in seconds for the request. This can be a
float or integer, which will set the same timeout value for
the socket connect and the socket read, or an instance of
:class:`urllib3.util.Timeout`, which gives you more fine-grained
control over your timeouts.
"""
self.num_requests += 1
timeout_obj = self._get_timeout(timeout)
timeout_obj.start_connect()
conn.timeout = timeout_obj.connect_timeout
# Trigger any extra validation we need to do.
try:
> self._validate_conn(conn)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py:382:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
self = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7ffbe83e07f0>
conn = <urllib3.connection.HTTPSConnection object at 0x7ffbe83e01f0>
def _validate_conn(self, conn):
"""
Called right before a request is made, after the socket is created.
"""
super(HTTPSConnectionPool, self)._validate_conn(conn)
# Force connect early to allow us to validate the connection.
if not getattr(conn, "sock", None): # AppEngine might not have `.sock`
> conn.connect()
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py:1010:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
self = <urllib3.connection.HTTPSConnection object at 0x7ffbe83e01f0>
def connect(self):
# Add certificate verification
conn = self._new_conn()
hostname = self.host
tls_in_tls = False
if self._is_using_tunnel():
if self.tls_in_tls_required:
conn = self._connect_tls_proxy(hostname, conn)
tls_in_tls = True
self.sock = conn
# Calls self._set_hostport(), so self.host is
# self._tunnel_host below.
self._tunnel()
# Mark this connection as not reusable
self.auto_open = 0
# Override the host with the one we're requesting data from.
hostname = self._tunnel_host
server_hostname = hostname
if self.server_hostname is not None:
server_hostname = self.server_hostname
is_time_off = datetime.date.today() < RECENT_DATE
if is_time_off:
warnings.warn(
(
"System time is way off (before {0}). This will probably "
"lead to SSL verification errors"
).format(RECENT_DATE),
SystemTimeWarning,
)
# Wrap socket using verification with the root certs in
# trusted_root_certs
default_ssl_context = False
if self.ssl_context is None:
default_ssl_context = True
self.ssl_context = create_urllib3_context(
ssl_version=resolve_ssl_version(self.ssl_version),
cert_reqs=resolve_cert_reqs(self.cert_reqs),
)
context = self.ssl_context
context.verify_mode = resolve_cert_reqs(self.cert_reqs)
# Try to load OS default certs if none are given.
# Works well on Windows (requires Python3.4+)
if (
not self.ca_certs
and not self.ca_cert_dir
and not self.ca_cert_data
and default_ssl_context
and hasattr(context, "load_default_certs")
):
context.load_default_certs()
> self.sock = ssl_wrap_socket(
sock=conn,
keyfile=self.key_file,
certfile=self.cert_file,
key_password=self.key_password,
ca_certs=self.ca_certs,
ca_cert_dir=self.ca_cert_dir,
ca_cert_data=self.ca_cert_data,
server_hostname=server_hostname,
ssl_context=context,
tls_in_tls=tls_in_tls,
)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connection.py:411:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
sock = <socket.socket [closed] fd=-1, family=AddressFamily.AF_INET, type=SocketKind.SOCK_STREAM, proto=6>
keyfile = None, certfile = None, cert_reqs = None
ca_certs = '/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/certifi/cacert.pem'
server_hostname = 'sparc.biolucida.net', ssl_version = None, ciphers = None
ssl_context = <ssl.SSLContext object at 0x7ffbe840d340>, ca_cert_dir = None
key_password = None, ca_cert_data = None, tls_in_tls = False
def ssl_wrap_socket(
sock,
keyfile=None,
certfile=None,
cert_reqs=None,
ca_certs=None,
server_hostname=None,
ssl_version=None,
ciphers=None,
ssl_context=None,
ca_cert_dir=None,
key_password=None,
ca_cert_data=None,
tls_in_tls=False,
):
"""
All arguments except for server_hostname, ssl_context, and ca_cert_dir have
the same meaning as they do when using :func:`ssl.wrap_socket`.
:param server_hostname:
When SNI is supported, the expected hostname of the certificate
:param ssl_context:
A pre-made :class:`SSLContext` object. If none is provided, one will
be created using :func:`create_urllib3_context`.
:param ciphers:
A string of ciphers we wish the client to support.
:param ca_cert_dir:
A directory containing CA certificates in multiple separate files, as
supported by OpenSSL's -CApath flag or the capath argument to
SSLContext.load_verify_locations().
:param key_password:
Optional password if the keyfile is encrypted.
:param ca_cert_data:
Optional string containing CA certificates in PEM format suitable for
passing as the cadata parameter to SSLContext.load_verify_locations()
:param tls_in_tls:
Use SSLTransport to wrap the existing socket.
"""
context = ssl_context
if context is None:
# Note: This branch of code and all the variables in it are no longer
# used by urllib3 itself. We should consider deprecating and removing
# this code.
context = create_urllib3_context(ssl_version, cert_reqs, ciphers=ciphers)
if ca_certs or ca_cert_dir or ca_cert_data:
try:
context.load_verify_locations(ca_certs, ca_cert_dir, ca_cert_data)
except (IOError, OSError) as e:
raise SSLError(e)
elif ssl_context is None and hasattr(context, "load_default_certs"):
# try to load OS default certs; works well on Windows (require Python3.4+)
context.load_default_certs()
# Attempt to detect if we get the goofy behavior of the
# keyfile being encrypted and OpenSSL asking for the
# passphrase via the terminal and instead error out.
if keyfile and key_password is None and _is_key_file_encrypted(keyfile):
raise SSLError("Client private key is encrypted, password is required")
if certfile:
if key_password is None:
context.load_cert_chain(certfile, keyfile)
else:
context.load_cert_chain(certfile, keyfile, key_password)
try:
if hasattr(context, "set_alpn_protocols"):
context.set_alpn_protocols(ALPN_PROTOCOLS)
except NotImplementedError:
pass
# If we detect server_hostname is an IP address then the SNI
# extension should not be used according to RFC3546 Section 3.1
use_sni_hostname = server_hostname and not is_ipaddress(server_hostname)
# SecureTransport uses server_hostname in certificate verification.
send_sni = (use_sni_hostname and HAS_SNI) or (
IS_SECURETRANSPORT and server_hostname
)
# Do not warn the user if server_hostname is an invalid SNI hostname.
if not HAS_SNI and use_sni_hostname:
warnings.warn(
"An HTTPS request has been made, but the SNI (Server Name "
"Indication) extension to TLS is not available on this platform. "
"This may cause the server to present an incorrect TLS "
"certificate, which can cause validation failures. You can upgrade to "
"a newer version of Python to solve this. For more information, see "
"https://urllib3.readthedocs.io/en/latest/advanced-usage.html"
"#ssl-warnings",
SNIMissingWarning,
)
if send_sni:
> ssl_sock = _ssl_wrap_socket_impl(
sock, context, tls_in_tls, server_hostname=server_hostname
)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/util/ssl_.py:428:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
sock = <socket.socket [closed] fd=-1, family=AddressFamily.AF_INET, type=SocketKind.SOCK_STREAM, proto=6>
ssl_context = <ssl.SSLContext object at 0x7ffbe840d340>, tls_in_tls = False
server_hostname = 'sparc.biolucida.net'
def _ssl_wrap_socket_impl(sock, ssl_context, tls_in_tls, server_hostname=None):
if tls_in_tls:
if not SSLTransport:
# Import error, ssl is not available.
raise ProxySchemeUnsupported(
"TLS in TLS requires support for the 'ssl' module"
)
SSLTransport._validate_ssl_context_for_tls_in_tls(ssl_context)
return SSLTransport(sock, ssl_context, server_hostname)
if server_hostname:
> return ssl_context.wrap_socket(sock, server_hostname=server_hostname)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/util/ssl_.py:472:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
self = <ssl.SSLContext object at 0x7ffbe840d340>
sock = <socket.socket [closed] fd=-1, family=AddressFamily.AF_INET, type=SocketKind.SOCK_STREAM, proto=6>
server_side = False, do_handshake_on_connect = True, suppress_ragged_eofs = True
server_hostname = 'sparc.biolucida.net', session = None
def wrap_socket(self, sock, server_side=False,
do_handshake_on_connect=True,
suppress_ragged_eofs=True,
server_hostname=None, session=None):
# SSLSocket class handles server_hostname encoding before it calls
# ctx._wrap_socket()
> return self.sslsocket_class._create(
sock=sock,
server_side=server_side,
do_handshake_on_connect=do_handshake_on_connect,
suppress_ragged_eofs=suppress_ragged_eofs,
server_hostname=server_hostname,
context=self,
session=session
)
/usr/lib/python3.9/ssl.py:501:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
cls = <class 'ssl.SSLSocket'>
sock = <socket.socket [closed] fd=-1, family=AddressFamily.AF_INET, type=SocketKind.SOCK_STREAM, proto=6>
server_side = False, do_handshake_on_connect = True, suppress_ragged_eofs = True
server_hostname = 'sparc.biolucida.net'
context = <ssl.SSLContext object at 0x7ffbe840d340>, session = None
@classmethod
def _create(cls, sock, server_side=False, do_handshake_on_connect=True,
suppress_ragged_eofs=True, server_hostname=None,
context=None, session=None):
if sock.getsockopt(SOL_SOCKET, SO_TYPE) != SOCK_STREAM:
raise NotImplementedError("only stream sockets are supported")
if server_side:
if server_hostname:
raise ValueError("server_hostname can only be specified "
"in client mode")
if session is not None:
raise ValueError("session can only be specified in "
"client mode")
if context.check_hostname and not server_hostname:
raise ValueError("check_hostname requires server_hostname")
kwargs = dict(
family=sock.family, type=sock.type, proto=sock.proto,
fileno=sock.fileno()
)
self = cls.__new__(cls, **kwargs)
super(SSLSocket, self).__init__(**kwargs)
sock_timeout = sock.gettimeout()
sock.detach()
self._context = context
self._session = session
self._closed = False
self._sslobj = None
self.server_side = server_side
self.server_hostname = context._encode_hostname(server_hostname)
self.do_handshake_on_connect = do_handshake_on_connect
self.suppress_ragged_eofs = suppress_ragged_eofs
# See if we are connected
try:
self.getpeername()
except OSError as e:
if e.errno != errno.ENOTCONN:
raise
connected = False
blocking = self.getblocking()
self.setblocking(False)
try:
# We are not connected so this is not supposed to block, but
# testing revealed otherwise on macOS and Windows so we do
# the non-blocking dance regardless. Our raise when any data
# is found means consuming the data is harmless.
notconn_pre_handshake_data = self.recv(1)
except OSError as e:
# EINVAL occurs for recv(1) on non-connected on unix sockets.
if e.errno not in (errno.ENOTCONN, errno.EINVAL):
raise
notconn_pre_handshake_data = b''
self.setblocking(blocking)
if notconn_pre_handshake_data:
# This prevents pending data sent to the socket before it was
# closed from escaping to the caller who could otherwise
# presume it came through a successful TLS connection.
reason = "Closed before TLS handshake with data in recv buffer."
notconn_pre_handshake_data_error = SSLError(e.errno, reason)
# Add the SSLError attributes that _ssl.c always adds.
notconn_pre_handshake_data_error.reason = reason
notconn_pre_handshake_data_error.library = None
try:
self.close()
except OSError:
pass
try:
raise notconn_pre_handshake_data_error
finally:
# Explicitly break the reference cycle.
notconn_pre_handshake_data_error = None
else:
connected = True
self.settimeout(sock_timeout) # Must come after setblocking() calls.
self._connected = connected
if connected:
# create the SSL object
try:
self._sslobj = self._context._wrap_socket(
self, server_side, self.server_hostname,
owner=self, session=self._session,
)
if do_handshake_on_connect:
timeout = self.gettimeout()
if timeout == 0.0:
# non-blocking
raise ValueError("do_handshake_on_connect should not be specified for non-blocking sockets")
> self.do_handshake()
/usr/lib/python3.9/ssl.py:1074:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
self = <ssl.SSLSocket [closed] fd=-1, family=AddressFamily.AF_INET, type=SocketKind.SOCK_STREAM, proto=6>
block = False
@_sslcopydoc
def do_handshake(self, block=False):
self._check_connected()
timeout = self.gettimeout()
try:
if timeout == 0.0 and block:
self.settimeout(None)
> self._sslobj.do_handshake()
E ssl.SSLCertVerificationError: [SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate has expired (_ssl.c:1147)
/usr/lib/python3.9/ssl.py:1343: SSLCertVerificationError
During handling of the above exception, another exception occurred:
self = <requests.adapters.HTTPAdapter object at 0x7ffbe13e0130>
request = <PreparedRequest [POST]>, stream = False
timeout = Timeout(connect=None, read=None, total=None), verify = True
cert = None, proxies = OrderedDict()
def send(
self, request, stream=False, timeout=None, verify=True, cert=None, proxies=None
):
"""Sends PreparedRequest object. Returns Response object.
:param request: The :class:`PreparedRequest <PreparedRequest>` being sent.
:param stream: (optional) Whether to stream the request content.
:param timeout: (optional) How long to wait for the server to send
data before giving up, as a float, or a :ref:`(connect timeout,
read timeout) <timeouts>` tuple.
:type timeout: float or tuple or urllib3 Timeout object
:param verify: (optional) Either a boolean, in which case it controls whether
we verify the server's TLS certificate, or a string, in which case it
must be a path to a CA bundle to use
:param cert: (optional) Any user-provided SSL certificate to be trusted.
:param proxies: (optional) The proxies dictionary to apply to the request.
:rtype: requests.Response
"""
try:
conn = self.get_connection(request.url, proxies)
except LocationValueError as e:
raise InvalidURL(e, request=request)
self.cert_verify(conn, request.url, verify, cert)
url = self.request_url(request, proxies)
self.add_headers(
request,
stream=stream,
timeout=timeout,
verify=verify,
cert=cert,
proxies=proxies,
)
chunked = not (request.body is None or "Content-Length" in request.headers)
if isinstance(timeout, tuple):
try:
connect, read = timeout
timeout = TimeoutSauce(connect=connect, read=read)
except ValueError:
raise ValueError(
f"Invalid timeout {timeout}. Pass a (connect, read) timeout tuple, "
f"or a single float to set both timeouts to the same value."
)
elif isinstance(timeout, TimeoutSauce):
pass
else:
timeout = TimeoutSauce(connect=timeout, read=timeout)
try:
> resp = conn.urlopen(
method=request.method,
url=url,
body=request.body,
headers=request.headers,
redirect=False,
assert_same_host=False,
preload_content=False,
decode_content=False,
retries=self.max_retries,
timeout=timeout,
chunked=chunked,
)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/adapters.py:486:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
self = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7ffbe83e07f0>
method = 'POST', url = '/api/v1/authenticate'
body = 'username=therealmapcore&password=suckerforalltheimagesyoushow&token='
headers = {'User-Agent': 'python-requests/2.31.0', 'Accept-Encoding': 'gzip, deflate', 'Accept': '*/*', 'Connection': 'keep-alive', 'Content-Length': '68', 'Content-Type': 'application/x-www-form-urlencoded'}
retries = Retry(total=0, connect=None, read=False, redirect=None, status=None)
redirect = False, assert_same_host = False
timeout = Timeout(connect=None, read=None, total=None), pool_timeout = None
release_conn = False, chunked = False, body_pos = None
response_kw = {'decode_content': False, 'preload_content': False}
parsed_url = Url(scheme=None, auth=None, host=None, port=None, path='/api/v1/authenticate', query=None, fragment=None)
destination_scheme = None, conn = None, release_this_conn = True
http_tunnel_required = False, err = None, clean_exit = False
def urlopen(
self,
method,
url,
body=None,
headers=None,
retries=None,
redirect=True,
assert_same_host=True,
timeout=_Default,
pool_timeout=None,
release_conn=None,
chunked=False,
body_pos=None,
**response_kw
):
"""
Get a connection from the pool and perform an HTTP request. This is the
lowest level call for making a request, so you'll need to specify all
the raw details.
.. note::
More commonly, it's appropriate to use a convenience method provided
by :class:`.RequestMethods`, such as :meth:`request`.
.. note::
`release_conn` will only behave as expected if
`preload_content=False` because we want to make
`preload_content=False` the default behaviour someday soon without
breaking backwards compatibility.
:param method:
HTTP request method (such as GET, POST, PUT, etc.)
:param url:
The URL to perform the request on.
:param body:
Data to send in the request body, either :class:`str`, :class:`bytes`,
an iterable of :class:`str`/:class:`bytes`, or a file-like object.
:param headers:
Dictionary of custom headers to send, such as User-Agent,
If-None-Match, etc. If None, pool headers are used. If provided,
these headers completely replace any pool-specific headers.
:param retries:
Configure the number of retries to allow before raising a
:class:`~urllib3.exceptions.MaxRetryError` exception.
Pass ``None`` to retry until you receive a response. Pass a
:class:`~urllib3.util.retry.Retry` object for fine-grained control
over different types of retries.
Pass an integer number to retry connection errors that many times,
but no other types of errors. Pass zero to never retry.
If ``False``, then retries are disabled and any exception is raised
immediately. Also, instead of raising a MaxRetryError on redirects,
the redirect response will be returned.
:type retries: :class:`~urllib3.util.retry.Retry`, False, or an int.
:param redirect:
If True, automatically handle redirects (status codes 301, 302,
303, 307, 308). Each redirect counts as a retry. Disabling retries
will disable redirect, too.
:param assert_same_host:
If ``True``, will make sure that the host of the pool requests is
consistent else will raise HostChangedError. When ``False``, you can
use the pool on an HTTP proxy and request foreign hosts.
:param timeout:
If specified, overrides the default timeout for this one
request. It may be a float (in seconds) or an instance of
:class:`urllib3.util.Timeout`.
:param pool_timeout:
If set and the pool is set to block=True, then this method will
block for ``pool_timeout`` seconds and raise EmptyPoolError if no
connection is available within the time period.
:param release_conn:
If False, then the urlopen call will not release the connection
back into the pool once a response is received (but will release if
you read the entire contents of the response such as when
`preload_content=True`). This is useful if you're not preloading
the response's content immediately. You will need to call
``r.release_conn()`` on the response ``r`` to return the connection
back into the pool. If None, it takes the value of
``response_kw.get('preload_content', True)``.
:param chunked:
If True, urllib3 will send the body using chunked transfer
encoding. Otherwise, urllib3 will send the body using the standard
content-length form. Defaults to False.
:param int body_pos:
Position to seek to in file-like body in the event of a retry or
redirect. Typically this won't need to be set because urllib3 will
auto-populate the value when needed.
:param \\**response_kw:
Additional parameters are passed to
:meth:`urllib3.response.HTTPResponse.from_httplib`
"""
parsed_url = parse_url(url)
destination_scheme = parsed_url.scheme
if headers is None:
headers = self.headers
if not isinstance(retries, Retry):
retries = Retry.from_int(retries, redirect=redirect, default=self.retries)
if release_conn is None:
release_conn = response_kw.get("preload_content", True)
# Check host
if assert_same_host and not self.is_same_host(url):
raise HostChangedError(self, url, retries)
# Ensure that the URL we're connecting to is properly encoded
if url.startswith("/"):
url = six.ensure_str(_encode_target(url))
else:
url = six.ensure_str(parsed_url.url)
conn = None
# Track whether `conn` needs to be released before
# returning/raising/recursing. Update this variable if necessary, and
# leave `release_conn` constant throughout the function. That way, if
# the function recurses, the original value of `release_conn` will be
# passed down into the recursive call, and its value will be respected.
#
# See issue #651 [1] for details.
#
# [1] <https://github.com/urllib3/urllib3/issues/651>
release_this_conn = release_conn
http_tunnel_required = connection_requires_http_tunnel(
self.proxy, self.proxy_config, destination_scheme
)
# Merge the proxy headers. Only done when not using HTTP CONNECT. We
# have to copy the headers dict so we can safely change it without those
# changes being reflected in anyone else's copy.
if not http_tunnel_required:
headers = headers.copy()
headers.update(self.proxy_headers)
# Must keep the exception bound to a separate variable or else Python 3
# complains about UnboundLocalError.
err = None
# Keep track of whether we cleanly exited the except block. This
# ensures we do proper cleanup in finally.
clean_exit = False
# Rewind body position, if needed. Record current position
# for future rewinds in the event of a redirect/retry.
body_pos = set_file_position(body, body_pos)
try:
# Request a connection from the queue.
timeout_obj = self._get_timeout(timeout)
conn = self._get_conn(timeout=pool_timeout)
conn.timeout = timeout_obj.connect_timeout
is_new_proxy_conn = self.proxy is not None and not getattr(
conn, "sock", None
)
if is_new_proxy_conn and http_tunnel_required:
self._prepare_proxy(conn)
# Make the request on the httplib connection object.
httplib_response = self._make_request(
conn,
method,
url,
timeout=timeout_obj,
body=body,
headers=headers,
chunked=chunked,
)
# If we're going to release the connection in ``finally:``, then
# the response doesn't need to know about the connection. Otherwise
# it will also try to release it and we'll have a double-release
# mess.
response_conn = conn if not release_conn else None
# Pass method to Response for length checking
response_kw["request_method"] = method
# Import httplib's response into our own wrapper object
response = self.ResponseCls.from_httplib(
httplib_response,
pool=self,
connection=response_conn,
retries=retries,
**response_kw
)
# Everything went great!
clean_exit = True
except EmptyPoolError:
# Didn't get a connection from the pool, no need to clean up
clean_exit = True
release_this_conn = False
raise
except (
TimeoutError,
HTTPException,
SocketError,
ProtocolError,
BaseSSLError,
SSLError,
CertificateError,
) as e:
# Discard the connection for these exceptions. It will be
# replaced during the next _get_conn() call.
clean_exit = False
if isinstance(e, (BaseSSLError, CertificateError)):
e = SSLError(e)
elif isinstance(e, (SocketError, NewConnectionError)) and self.proxy:
e = ProxyError("Cannot connect to proxy.", e)
elif isinstance(e, (SocketError, HTTPException)):
e = ProtocolError("Connection aborted.", e)
> retries = retries.increment(
method, url, error=e, _pool=self, _stacktrace=sys.exc_info()[2]
)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py:755:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
self = Retry(total=0, connect=None, read=False, redirect=None, status=None)
method = 'POST', url = '/api/v1/authenticate', response = None
error = SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate has expired (_ssl.c:1147)'))
_pool = <urllib3.connectionpool.HTTPSConnectionPool object at 0x7ffbe83e07f0>
_stacktrace = <traceback object at 0x7ffbe859fb40>
def increment(
self,
method=None,
url=None,
response=None,
error=None,
_pool=None,
_stacktrace=None,
):
"""Return a new Retry object with incremented retry counters.
:param response: A response object, or None, if the server did not
return a response.
:type response: :class:`~urllib3.response.HTTPResponse`
:param Exception error: An error encountered during the request, or
None if the response was received successfully.
:return: A new ``Retry`` object.
"""
if self.total is False and error:
# Disabled, indicate to re-raise the error.
raise six.reraise(type(error), error, _stacktrace)
total = self.total
if total is not None:
total -= 1
connect = self.connect
read = self.read
redirect = self.redirect
status_count = self.status
other = self.other
cause = "unknown"
status = None
redirect_location = None
if error and self._is_connection_error(error):
# Connect retry?
if connect is False:
raise six.reraise(type(error), error, _stacktrace)
elif connect is not None:
connect -= 1
elif error and self._is_read_error(error):
# Read retry?
if read is False or not self._is_method_retryable(method):
raise six.reraise(type(error), error, _stacktrace)
elif read is not None:
read -= 1
elif error:
# Other retry?
if other is not None:
other -= 1
elif response and response.get_redirect_location():
# Redirect retry?
if redirect is not None:
redirect -= 1
cause = "too many redirects"
redirect_location = response.get_redirect_location()
status = response.status
else:
# Incrementing because of a server error like a 500 in
# status_forcelist and the given method is in the allowed_methods
cause = ResponseError.GENERIC_ERROR
if response and response.status:
if status_count is not None:
status_count -= 1
cause = ResponseError.SPECIFIC_ERROR.format(status_code=response.status)
status = response.status
history = self.history + (
RequestHistory(method, url, error, status, redirect_location),
)
new_retry = self.new(
total=total,
connect=connect,
read=read,
redirect=redirect,
status=status_count,
other=other,
history=history,
)
if new_retry.is_exhausted():
> raise MaxRetryError(_pool, url, error or ResponseError(cause))
E urllib3.exceptions.MaxRetryError: HTTPSConnectionPool(host='sparc.biolucida.net', port=443): Max retries exceeded with url: /api/v1/authenticate (Caused by SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate has expired (_ssl.c:1147)')))
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/util/retry.py:574: MaxRetryError
During handling of the above exception, another exception occurred:
self = <test_biolucida.BiolucidaTestCase testMethod=test_authenticate>
def test_authenticate(self):
bl = Biolucida()
> authenticate_biolucida()
tests/test_biolucida.py:21:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
app/main.py:1216: in authenticate_biolucida
response = requests.request("POST", url, headers=headers, data=payload, files=files)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/api.py:59: in request
return session.request(method=method, url=url, **kwargs)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/sessions.py:589: in request
resp = self.send(prep, **send_kwargs)
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/sessions.py:703: in send
r = adapter.send(request, **kwargs)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
self = <requests.adapters.HTTPAdapter object at 0x7ffbe13e0130>
request = <PreparedRequest [POST]>, stream = False
timeout = Timeout(connect=None, read=None, total=None), verify = True
cert = None, proxies = OrderedDict()
def send(
self, request, stream=False, timeout=None, verify=True, cert=None, proxies=None
):
"""Sends PreparedRequest object. Returns Response object.
:param request: The :class:`PreparedRequest <PreparedRequest>` being sent.
:param stream: (optional) Whether to stream the request content.
:param timeout: (optional) How long to wait for the server to send
data before giving up, as a float, or a :ref:`(connect timeout,
read timeout) <timeouts>` tuple.
:type timeout: float or tuple or urllib3 Timeout object
:param verify: (optional) Either a boolean, in which case it controls whether
we verify the server's TLS certificate, or a string, in which case it
must be a path to a CA bundle to use
:param cert: (optional) Any user-provided SSL certificate to be trusted.
:param proxies: (optional) The proxies dictionary to apply to the request.
:rtype: requests.Response
"""
try:
conn = self.get_connection(request.url, proxies)
except LocationValueError as e:
raise InvalidURL(e, request=request)
self.cert_verify(conn, request.url, verify, cert)
url = self.request_url(request, proxies)
self.add_headers(
request,
stream=stream,
timeout=timeout,
verify=verify,
cert=cert,
proxies=proxies,
)
chunked = not (request.body is None or "Content-Length" in request.headers)
if isinstance(timeout, tuple):
try:
connect, read = timeout
timeout = TimeoutSauce(connect=connect, read=read)
except ValueError:
raise ValueError(
f"Invalid timeout {timeout}. Pass a (connect, read) timeout tuple, "
f"or a single float to set both timeouts to the same value."
)
elif isinstance(timeout, TimeoutSauce):
pass
else:
timeout = TimeoutSauce(connect=timeout, read=timeout)
try:
resp = conn.urlopen(
method=request.method,
url=url,
body=request.body,
headers=request.headers,
redirect=False,
assert_same_host=False,
preload_content=False,
decode_content=False,
retries=self.max_retries,
timeout=timeout,
chunked=chunked,
)
except (ProtocolError, OSError) as err:
raise ConnectionError(err, request=request)
except MaxRetryError as e:
if isinstance(e.reason, ConnectTimeoutError):
# TODO: Remove this in 3.0.0: see #2811
if not isinstance(e.reason, NewConnectionError):
raise ConnectTimeout(e, request=request)
if isinstance(e.reason, ResponseError):
raise RetryError(e, request=request)
if isinstance(e.reason, _ProxyError):
raise ProxyError(e, request=request)
if isinstance(e.reason, _SSLError):
# This branch is for urllib3 v1.22 and later.
> raise SSLError(e, request=request)
E requests.exceptions.SSLError: HTTPSConnectionPool(host='sparc.biolucida.net', port=443): Max retries exceeded with url: /api/v1/authenticate (Caused by SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate has expired (_ssl.c:1147)')))
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/adapters.py:517: SSLError
_______________________ BiolucidaTestCase.test_bad_token _______________________
self = <test_biolucida.BiolucidaTestCase testMethod=test_bad_token>
def test_bad_token(self):
bl = Biolucida()
bl.set_token('bad_token')
> thumbnail = thumbnail_by_image_id(1170)
tests/test_biolucida.py:42:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
app/main.py:1150: in thumbnail_by_image_id
return abort(404, "An error occured while fetching the thumbnail")
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/werkzeug/exceptions.py:772: in abort
return _aborter(status, *args, **kwargs)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
self = <werkzeug.exceptions.Aborter object at 0x7ffbeddd2ac0>, code = 404
args = ('An error occured while fetching the thumbnail',), kwargs = {}
def __call__(self, code, *args, **kwargs):
if not args and not kwargs and not isinstance(code, integer_types):
raise HTTPException(response=code)
if code not in self.mapping:
raise LookupError("no exception for %r" % code)
> raise self.mapping[code](*args, **kwargs)
E werkzeug.exceptions.NotFound: 404 Not Found: An error occured while fetching the thumbnail
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/werkzeug/exceptions.py:753: NotFound
----------------------------- Captured stderr call -----------------------------
--- Logging error ---
Traceback (most recent call last):
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py", line 699, in urlopen
httplib_response = self._make_request(
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py", line 382, in _make_request
self._validate_conn(conn)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py", line 1010, in _validate_conn
conn.connect()
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connection.py", line 411, in connect
self.sock = ssl_wrap_socket(
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/util/ssl_.py", line 428, in ssl_wrap_socket
ssl_sock = _ssl_wrap_socket_impl(
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/util/ssl_.py", line 472, in _ssl_wrap_socket_impl
return ssl_context.wrap_socket(sock, server_hostname=server_hostname)
File "/usr/lib/python3.9/ssl.py", line 501, in wrap_socket
return self.sslsocket_class._create(
File "/usr/lib/python3.9/ssl.py", line 1074, in _create
self.do_handshake()
File "/usr/lib/python3.9/ssl.py", line 1343, in do_handshake
self._sslobj.do_handshake()
ssl.SSLCertVerificationError: [SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate has expired (_ssl.c:1147)
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/adapters.py", line 486, in send
resp = conn.urlopen(
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py", line 755, in urlopen
retries = retries.increment(
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/util/retry.py", line 574, in increment
raise MaxRetryError(_pool, url, error or ResponseError(cause))
urllib3.exceptions.MaxRetryError: HTTPSConnectionPool(host='sparc.biolucida.net', port=443): Max retries exceeded with url: /api/v1/thumbnail/1170 (Caused by SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate has expired (_ssl.c:1147)')))
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/home/cmiss/Jenkins/workspace/SPARC-API-DEV/app/main.py", line 1135, in thumbnail_by_image_id
response = requests.request("GET", url, headers=headers)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/api.py", line 59, in request
return session.request(method=method, url=url, **kwargs)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/sessions.py", line 589, in request
resp = self.send(prep, **send_kwargs)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/sessions.py", line 703, in send
r = adapter.send(request, **kwargs)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/adapters.py", line 517, in send
raise SSLError(e, request=request)
requests.exceptions.SSLError: HTTPSConnectionPool(host='sparc.biolucida.net', port=443): Max retries exceeded with url: /api/v1/thumbnail/1170 (Caused by SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate has expired (_ssl.c:1147)')))
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/usr/lib/python3.9/logging/__init__.py", line 1083, in emit
msg = self.format(record)
File "/usr/lib/python3.9/logging/__init__.py", line 927, in format
return fmt.format(record)
File "/usr/lib/python3.9/logging/__init__.py", line 663, in format
record.message = record.getMessage()
File "/usr/lib/python3.9/logging/__init__.py", line 367, in getMessage
msg = msg % self.args
TypeError: not all arguments converted during string formatting
Call stack:
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/bin/pytest", line 8, in <module>
sys.exit(main())
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/_pytest/config/__init__.py", line 124, in main
ret = config.hook.pytest_cmdline_main(
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/hooks.py", line 286, in __call__
return self._hookexec(self, self.get_hookimpls(), kwargs)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/manager.py", line 93, in _hookexec
return self._inner_hookexec(hook, methods, kwargs)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/manager.py", line 84, in <lambda>
self._inner_hookexec = lambda hook, methods, kwargs: hook.multicall(
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/callers.py", line 187, in _multicall
res = hook_impl.function(*args)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/_pytest/main.py", line 240, in pytest_cmdline_main
return wrap_session(config, _main)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/_pytest/main.py", line 191, in wrap_session
session.exitstatus = doit(config, session) or 0
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/_pytest/main.py", line 247, in _main
config.hook.pytest_runtestloop(session=session)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/hooks.py", line 286, in __call__
return self._hookexec(self, self.get_hookimpls(), kwargs)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/manager.py", line 93, in _hookexec
return self._inner_hookexec(hook, methods, kwargs)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/manager.py", line 84, in <lambda>
self._inner_hookexec = lambda hook, methods, kwargs: hook.multicall(
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/callers.py", line 187, in _multicall
res = hook_impl.function(*args)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/_pytest/main.py", line 272, in pytest_runtestloop
item.config.hook.pytest_runtest_protocol(item=item, nextitem=nextitem)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/hooks.py", line 286, in __call__
return self._hookexec(self, self.get_hookimpls(), kwargs)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/manager.py", line 93, in _hookexec
return self._inner_hookexec(hook, methods, kwargs)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/manager.py", line 84, in <lambda>
self._inner_hookexec = lambda hook, methods, kwargs: hook.multicall(
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/callers.py", line 187, in _multicall
res = hook_impl.function(*args)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/_pytest/runner.py", line 85, in pytest_runtest_protocol
runtestprotocol(item, nextitem=nextitem)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/_pytest/runner.py", line 100, in runtestprotocol
reports.append(call_and_report(item, "call", log))
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/_pytest/runner.py", line 186, in call_and_report
call = call_runtest_hook(item, when, **kwds)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/_pytest/runner.py", line 216, in call_runtest_hook
return CallInfo.from_call(
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/_pytest/runner.py", line 244, in from_call
result = func()
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/_pytest/runner.py", line 217, in <lambda>
lambda: ihook(item=item, **kwds), when=when, reraise=reraise
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/hooks.py", line 286, in __call__
return self._hookexec(self, self.get_hookimpls(), kwargs)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/manager.py", line 93, in _hookexec
return self._inner_hookexec(hook, methods, kwargs)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/manager.py", line 84, in <lambda>
self._inner_hookexec = lambda hook, methods, kwargs: hook.multicall(
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/callers.py", line 187, in _multicall
res = hook_impl.function(*args)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/_pytest/runner.py", line 135, in pytest_runtest_call
item.runtest()
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/_pytest/unittest.py", line 231, in runtest
self._testcase(result=self)
File "/usr/lib/python3.9/unittest/case.py", line 651, in __call__
return self.run(*args, **kwds)
File "/usr/lib/python3.9/unittest/case.py", line 592, in run
self._callTestMethod(testMethod)
File "/usr/lib/python3.9/unittest/case.py", line 550, in _callTestMethod
method()
File "/home/cmiss/Jenkins/workspace/SPARC-API-DEV/tests/test_biolucida.py", line 42, in test_bad_token
thumbnail = thumbnail_by_image_id(1170)
File "/home/cmiss/Jenkins/workspace/SPARC-API-DEV/app/main.py", line 1149, in thumbnail_by_image_id
logging.error(f"Could not get the thumbnail for {image_id}", ex)
Message: 'Could not get the thumbnail for 1170'
Arguments: (SSLError(MaxRetryError("HTTPSConnectionPool(host='sparc.biolucida.net', port=443): Max retries exceeded with url: /api/v1/thumbnail/1170 (Caused by SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate has expired (_ssl.c:1147)')))")),)
--- Logging error ---
Traceback (most recent call last):
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py", line 699, in urlopen
httplib_response = self._make_request(
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py", line 382, in _make_request
self._validate_conn(conn)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py", line 1010, in _validate_conn
conn.connect()
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connection.py", line 411, in connect
self.sock = ssl_wrap_socket(
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/util/ssl_.py", line 428, in ssl_wrap_socket
ssl_sock = _ssl_wrap_socket_impl(
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/util/ssl_.py", line 472, in _ssl_wrap_socket_impl
return ssl_context.wrap_socket(sock, server_hostname=server_hostname)
File "/usr/lib/python3.9/ssl.py", line 501, in wrap_socket
return self.sslsocket_class._create(
File "/usr/lib/python3.9/ssl.py", line 1074, in _create
self.do_handshake()
File "/usr/lib/python3.9/ssl.py", line 1343, in do_handshake
self._sslobj.do_handshake()
ssl.SSLCertVerificationError: [SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate has expired (_ssl.c:1147)
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/adapters.py", line 486, in send
resp = conn.urlopen(
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py", line 755, in urlopen
retries = retries.increment(
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/util/retry.py", line 574, in increment
raise MaxRetryError(_pool, url, error or ResponseError(cause))
urllib3.exceptions.MaxRetryError: HTTPSConnectionPool(host='sparc.biolucida.net', port=443): Max retries exceeded with url: /api/v1/thumbnail/1170 (Caused by SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate has expired (_ssl.c:1147)')))
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/home/cmiss/Jenkins/workspace/SPARC-API-DEV/app/main.py", line 1135, in thumbnail_by_image_id
response = requests.request("GET", url, headers=headers)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/api.py", line 59, in request
return session.request(method=method, url=url, **kwargs)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/sessions.py", line 589, in request
resp = self.send(prep, **send_kwargs)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/sessions.py", line 703, in send
r = adapter.send(request, **kwargs)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/adapters.py", line 517, in send
raise SSLError(e, request=request)
requests.exceptions.SSLError: HTTPSConnectionPool(host='sparc.biolucida.net', port=443): Max retries exceeded with url: /api/v1/thumbnail/1170 (Caused by SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate has expired (_ssl.c:1147)')))
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/usr/lib/python3.9/logging/__init__.py", line 1083, in emit
msg = self.format(record)
File "/usr/lib/python3.9/logging/__init__.py", line 927, in format
return fmt.format(record)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/_pytest/logging.py", line 74, in format
return super().format(record)
File "/usr/lib/python3.9/logging/__init__.py", line 663, in format
record.message = record.getMessage()
File "/usr/lib/python3.9/logging/__init__.py", line 367, in getMessage
msg = msg % self.args
TypeError: not all arguments converted during string formatting
Call stack:
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/bin/pytest", line 8, in <module>
sys.exit(main())
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/_pytest/config/__init__.py", line 124, in main
ret = config.hook.pytest_cmdline_main(
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/hooks.py", line 286, in __call__
return self._hookexec(self, self.get_hookimpls(), kwargs)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/manager.py", line 93, in _hookexec
return self._inner_hookexec(hook, methods, kwargs)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/manager.py", line 84, in <lambda>
self._inner_hookexec = lambda hook, methods, kwargs: hook.multicall(
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/callers.py", line 187, in _multicall
res = hook_impl.function(*args)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/_pytest/main.py", line 240, in pytest_cmdline_main
return wrap_session(config, _main)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/_pytest/main.py", line 191, in wrap_session
session.exitstatus = doit(config, session) or 0
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/_pytest/main.py", line 247, in _main
config.hook.pytest_runtestloop(session=session)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/hooks.py", line 286, in __call__
return self._hookexec(self, self.get_hookimpls(), kwargs)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/manager.py", line 93, in _hookexec
return self._inner_hookexec(hook, methods, kwargs)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/manager.py", line 84, in <lambda>
self._inner_hookexec = lambda hook, methods, kwargs: hook.multicall(
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/callers.py", line 187, in _multicall
res = hook_impl.function(*args)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/_pytest/main.py", line 272, in pytest_runtestloop
item.config.hook.pytest_runtest_protocol(item=item, nextitem=nextitem)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/hooks.py", line 286, in __call__
return self._hookexec(self, self.get_hookimpls(), kwargs)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/manager.py", line 93, in _hookexec
return self._inner_hookexec(hook, methods, kwargs)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/manager.py", line 84, in <lambda>
self._inner_hookexec = lambda hook, methods, kwargs: hook.multicall(
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/callers.py", line 187, in _multicall
res = hook_impl.function(*args)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/_pytest/runner.py", line 85, in pytest_runtest_protocol
runtestprotocol(item, nextitem=nextitem)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/_pytest/runner.py", line 100, in runtestprotocol
reports.append(call_and_report(item, "call", log))
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/_pytest/runner.py", line 186, in call_and_report
call = call_runtest_hook(item, when, **kwds)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/_pytest/runner.py", line 216, in call_runtest_hook
return CallInfo.from_call(
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/_pytest/runner.py", line 244, in from_call
result = func()
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/_pytest/runner.py", line 217, in <lambda>
lambda: ihook(item=item, **kwds), when=when, reraise=reraise
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/hooks.py", line 286, in __call__
return self._hookexec(self, self.get_hookimpls(), kwargs)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/manager.py", line 93, in _hookexec
return self._inner_hookexec(hook, methods, kwargs)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/manager.py", line 84, in <lambda>
self._inner_hookexec = lambda hook, methods, kwargs: hook.multicall(
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/callers.py", line 187, in _multicall
res = hook_impl.function(*args)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/_pytest/runner.py", line 135, in pytest_runtest_call
item.runtest()
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/_pytest/unittest.py", line 231, in runtest
self._testcase(result=self)
File "/usr/lib/python3.9/unittest/case.py", line 651, in __call__
return self.run(*args, **kwds)
File "/usr/lib/python3.9/unittest/case.py", line 592, in run
self._callTestMethod(testMethod)
File "/usr/lib/python3.9/unittest/case.py", line 550, in _callTestMethod
method()
File "/home/cmiss/Jenkins/workspace/SPARC-API-DEV/tests/test_biolucida.py", line 42, in test_bad_token
thumbnail = thumbnail_by_image_id(1170)
File "/home/cmiss/Jenkins/workspace/SPARC-API-DEV/app/main.py", line 1149, in thumbnail_by_image_id
logging.error(f"Could not get the thumbnail for {image_id}", ex)
File "/usr/lib/python3.9/logging/__init__.py", line 2064, in error
root.error(msg, *args, **kwargs)
File "/usr/lib/python3.9/logging/__init__.py", line 1475, in error
self._log(ERROR, msg, args, **kwargs)
File "/usr/lib/python3.9/logging/__init__.py", line 1589, in _log
self.handle(record)
File "/usr/lib/python3.9/logging/__init__.py", line 1599, in handle
self.callHandlers(record)
File "/usr/lib/python3.9/logging/__init__.py", line 1661, in callHandlers
hdlr.handle(record)
File "/usr/lib/python3.9/logging/__init__.py", line 952, in handle
self.emit(record)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/_pytest/logging.py", line 310, in emit
logging.StreamHandler.emit(self, record)
Message: 'Could not get the thumbnail for 1170'
Arguments: (SSLError(MaxRetryError("HTTPSConnectionPool(host='sparc.biolucida.net', port=443): Max retries exceeded with url: /api/v1/thumbnail/1170 (Caused by SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate has expired (_ssl.c:1147)')))")),)
____________________ BiolucidaTestCase.test_get_image_info _____________________
self = <test_biolucida.BiolucidaTestCase testMethod=test_get_image_info>
def test_get_image_info(self):
> image_info = image_info_by_image_id(1170)
tests/test_biolucida.py:25:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
app/main.py:1161: in image_info_by_image_id
return abort(404, "An error occured while getting the image's info")
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/werkzeug/exceptions.py:772: in abort
return _aborter(status, *args, **kwargs)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
self = <werkzeug.exceptions.Aborter object at 0x7ffbeddd2ac0>, code = 404
args = ("An error occured while getting the image's info",), kwargs = {}
def __call__(self, code, *args, **kwargs):
if not args and not kwargs and not isinstance(code, integer_types):
raise HTTPException(response=code)
if code not in self.mapping:
raise LookupError("no exception for %r" % code)
> raise self.mapping[code](*args, **kwargs)
E werkzeug.exceptions.NotFound: 404 Not Found: An error occured while getting the image's info
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/werkzeug/exceptions.py:753: NotFound
----------------------------- Captured stderr call -----------------------------
--- Logging error ---
Traceback (most recent call last):
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py", line 699, in urlopen
httplib_response = self._make_request(
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py", line 382, in _make_request
self._validate_conn(conn)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py", line 1010, in _validate_conn
conn.connect()
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connection.py", line 411, in connect
self.sock = ssl_wrap_socket(
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/util/ssl_.py", line 428, in ssl_wrap_socket
ssl_sock = _ssl_wrap_socket_impl(
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/util/ssl_.py", line 472, in _ssl_wrap_socket_impl
return ssl_context.wrap_socket(sock, server_hostname=server_hostname)
File "/usr/lib/python3.9/ssl.py", line 501, in wrap_socket
return self.sslsocket_class._create(
File "/usr/lib/python3.9/ssl.py", line 1074, in _create
self.do_handshake()
File "/usr/lib/python3.9/ssl.py", line 1343, in do_handshake
self._sslobj.do_handshake()
ssl.SSLCertVerificationError: [SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate has expired (_ssl.c:1147)
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/adapters.py", line 486, in send
resp = conn.urlopen(
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py", line 755, in urlopen
retries = retries.increment(
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/util/retry.py", line 574, in increment
raise MaxRetryError(_pool, url, error or ResponseError(cause))
urllib3.exceptions.MaxRetryError: HTTPSConnectionPool(host='sparc.biolucida.net', port=443): Max retries exceeded with url: /api/v1/image/info/1170 (Caused by SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate has expired (_ssl.c:1147)')))
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/home/cmiss/Jenkins/workspace/SPARC-API-DEV/app/main.py", line 1157, in image_info_by_image_id
response = requests.request("GET", url)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/api.py", line 59, in request
return session.request(method=method, url=url, **kwargs)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/sessions.py", line 589, in request
resp = self.send(prep, **send_kwargs)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/sessions.py", line 703, in send
r = adapter.send(request, **kwargs)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/adapters.py", line 517, in send
raise SSLError(e, request=request)
requests.exceptions.SSLError: HTTPSConnectionPool(host='sparc.biolucida.net', port=443): Max retries exceeded with url: /api/v1/image/info/1170 (Caused by SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate has expired (_ssl.c:1147)')))
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/usr/lib/python3.9/logging/__init__.py", line 1083, in emit
msg = self.format(record)
File "/usr/lib/python3.9/logging/__init__.py", line 927, in format
return fmt.format(record)
File "/usr/lib/python3.9/logging/__init__.py", line 663, in format
record.message = record.getMessage()
File "/usr/lib/python3.9/logging/__init__.py", line 367, in getMessage
msg = msg % self.args
TypeError: not all arguments converted during string formatting
Call stack:
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/bin/pytest", line 8, in <module>
sys.exit(main())
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/_pytest/config/__init__.py", line 124, in main
ret = config.hook.pytest_cmdline_main(
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/hooks.py", line 286, in __call__
return self._hookexec(self, self.get_hookimpls(), kwargs)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/manager.py", line 93, in _hookexec
return self._inner_hookexec(hook, methods, kwargs)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/manager.py", line 84, in <lambda>
self._inner_hookexec = lambda hook, methods, kwargs: hook.multicall(
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/callers.py", line 187, in _multicall
res = hook_impl.function(*args)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/_pytest/main.py", line 240, in pytest_cmdline_main
return wrap_session(config, _main)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/_pytest/main.py", line 191, in wrap_session
session.exitstatus = doit(config, session) or 0
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/_pytest/main.py", line 247, in _main
config.hook.pytest_runtestloop(session=session)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/hooks.py", line 286, in __call__
return self._hookexec(self, self.get_hookimpls(), kwargs)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/manager.py", line 93, in _hookexec
return self._inner_hookexec(hook, methods, kwargs)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/manager.py", line 84, in <lambda>
self._inner_hookexec = lambda hook, methods, kwargs: hook.multicall(
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/callers.py", line 187, in _multicall
res = hook_impl.function(*args)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/_pytest/main.py", line 272, in pytest_runtestloop
item.config.hook.pytest_runtest_protocol(item=item, nextitem=nextitem)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/hooks.py", line 286, in __call__
return self._hookexec(self, self.get_hookimpls(), kwargs)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/manager.py", line 93, in _hookexec
return self._inner_hookexec(hook, methods, kwargs)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/manager.py", line 84, in <lambda>
self._inner_hookexec = lambda hook, methods, kwargs: hook.multicall(
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/callers.py", line 187, in _multicall
res = hook_impl.function(*args)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/_pytest/runner.py", line 85, in pytest_runtest_protocol
runtestprotocol(item, nextitem=nextitem)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/_pytest/runner.py", line 100, in runtestprotocol
reports.append(call_and_report(item, "call", log))
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/_pytest/runner.py", line 186, in call_and_report
call = call_runtest_hook(item, when, **kwds)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/_pytest/runner.py", line 216, in call_runtest_hook
return CallInfo.from_call(
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/_pytest/runner.py", line 244, in from_call
result = func()
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/_pytest/runner.py", line 217, in <lambda>
lambda: ihook(item=item, **kwds), when=when, reraise=reraise
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/hooks.py", line 286, in __call__
return self._hookexec(self, self.get_hookimpls(), kwargs)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/manager.py", line 93, in _hookexec
return self._inner_hookexec(hook, methods, kwargs)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/manager.py", line 84, in <lambda>
self._inner_hookexec = lambda hook, methods, kwargs: hook.multicall(
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/callers.py", line 187, in _multicall
res = hook_impl.function(*args)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/_pytest/runner.py", line 135, in pytest_runtest_call
item.runtest()
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/_pytest/unittest.py", line 231, in runtest
self._testcase(result=self)
File "/usr/lib/python3.9/unittest/case.py", line 651, in __call__
return self.run(*args, **kwds)
File "/usr/lib/python3.9/unittest/case.py", line 592, in run
self._callTestMethod(testMethod)
File "/usr/lib/python3.9/unittest/case.py", line 550, in _callTestMethod
method()
File "/home/cmiss/Jenkins/workspace/SPARC-API-DEV/tests/test_biolucida.py", line 25, in test_get_image_info
image_info = image_info_by_image_id(1170)
File "/home/cmiss/Jenkins/workspace/SPARC-API-DEV/app/main.py", line 1160, in image_info_by_image_id
logging.error(f"Could not get image info for {image_id}", ex)
Message: 'Could not get image info for 1170'
Arguments: (SSLError(MaxRetryError("HTTPSConnectionPool(host='sparc.biolucida.net', port=443): Max retries exceeded with url: /api/v1/image/info/1170 (Caused by SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate has expired (_ssl.c:1147)')))")),)
--- Logging error ---
Traceback (most recent call last):
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py", line 699, in urlopen
httplib_response = self._make_request(
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py", line 382, in _make_request
self._validate_conn(conn)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py", line 1010, in _validate_conn
conn.connect()
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connection.py", line 411, in connect
self.sock = ssl_wrap_socket(
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/util/ssl_.py", line 428, in ssl_wrap_socket
ssl_sock = _ssl_wrap_socket_impl(
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/util/ssl_.py", line 472, in _ssl_wrap_socket_impl
return ssl_context.wrap_socket(sock, server_hostname=server_hostname)
File "/usr/lib/python3.9/ssl.py", line 501, in wrap_socket
return self.sslsocket_class._create(
File "/usr/lib/python3.9/ssl.py", line 1074, in _create
self.do_handshake()
File "/usr/lib/python3.9/ssl.py", line 1343, in do_handshake
self._sslobj.do_handshake()
ssl.SSLCertVerificationError: [SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate has expired (_ssl.c:1147)
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/adapters.py", line 486, in send
resp = conn.urlopen(
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py", line 755, in urlopen
retries = retries.increment(
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/util/retry.py", line 574, in increment
raise MaxRetryError(_pool, url, error or ResponseError(cause))
urllib3.exceptions.MaxRetryError: HTTPSConnectionPool(host='sparc.biolucida.net', port=443): Max retries exceeded with url: /api/v1/image/info/1170 (Caused by SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate has expired (_ssl.c:1147)')))
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/home/cmiss/Jenkins/workspace/SPARC-API-DEV/app/main.py", line 1157, in image_info_by_image_id
response = requests.request("GET", url)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/api.py", line 59, in request
return session.request(method=method, url=url, **kwargs)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/sessions.py", line 589, in request
resp = self.send(prep, **send_kwargs)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/sessions.py", line 703, in send
r = adapter.send(request, **kwargs)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/adapters.py", line 517, in send
raise SSLError(e, request=request)
requests.exceptions.SSLError: HTTPSConnectionPool(host='sparc.biolucida.net', port=443): Max retries exceeded with url: /api/v1/image/info/1170 (Caused by SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate has expired (_ssl.c:1147)')))
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/usr/lib/python3.9/logging/__init__.py", line 1083, in emit
msg = self.format(record)
File "/usr/lib/python3.9/logging/__init__.py", line 927, in format
return fmt.format(record)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/_pytest/logging.py", line 74, in format
return super().format(record)
File "/usr/lib/python3.9/logging/__init__.py", line 663, in format
record.message = record.getMessage()
File "/usr/lib/python3.9/logging/__init__.py", line 367, in getMessage
msg = msg % self.args
TypeError: not all arguments converted during string formatting
Call stack:
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/bin/pytest", line 8, in <module>
sys.exit(main())
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/_pytest/config/__init__.py", line 124, in main
ret = config.hook.pytest_cmdline_main(
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/hooks.py", line 286, in __call__
return self._hookexec(self, self.get_hookimpls(), kwargs)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/manager.py", line 93, in _hookexec
return self._inner_hookexec(hook, methods, kwargs)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/manager.py", line 84, in <lambda>
self._inner_hookexec = lambda hook, methods, kwargs: hook.multicall(
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/callers.py", line 187, in _multicall
res = hook_impl.function(*args)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/_pytest/main.py", line 240, in pytest_cmdline_main
return wrap_session(config, _main)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/_pytest/main.py", line 191, in wrap_session
session.exitstatus = doit(config, session) or 0
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/_pytest/main.py", line 247, in _main
config.hook.pytest_runtestloop(session=session)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/hooks.py", line 286, in __call__
return self._hookexec(self, self.get_hookimpls(), kwargs)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/manager.py", line 93, in _hookexec
return self._inner_hookexec(hook, methods, kwargs)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/manager.py", line 84, in <lambda>
self._inner_hookexec = lambda hook, methods, kwargs: hook.multicall(
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/callers.py", line 187, in _multicall
res = hook_impl.function(*args)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/_pytest/main.py", line 272, in pytest_runtestloop
item.config.hook.pytest_runtest_protocol(item=item, nextitem=nextitem)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/hooks.py", line 286, in __call__
return self._hookexec(self, self.get_hookimpls(), kwargs)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/manager.py", line 93, in _hookexec
return self._inner_hookexec(hook, methods, kwargs)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/manager.py", line 84, in <lambda>
self._inner_hookexec = lambda hook, methods, kwargs: hook.multicall(
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/callers.py", line 187, in _multicall
res = hook_impl.function(*args)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/_pytest/runner.py", line 85, in pytest_runtest_protocol
runtestprotocol(item, nextitem=nextitem)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/_pytest/runner.py", line 100, in runtestprotocol
reports.append(call_and_report(item, "call", log))
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/_pytest/runner.py", line 186, in call_and_report
call = call_runtest_hook(item, when, **kwds)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/_pytest/runner.py", line 216, in call_runtest_hook
return CallInfo.from_call(
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/_pytest/runner.py", line 244, in from_call
result = func()
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/_pytest/runner.py", line 217, in <lambda>
lambda: ihook(item=item, **kwds), when=when, reraise=reraise
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/hooks.py", line 286, in __call__
return self._hookexec(self, self.get_hookimpls(), kwargs)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/manager.py", line 93, in _hookexec
return self._inner_hookexec(hook, methods, kwargs)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/manager.py", line 84, in <lambda>
self._inner_hookexec = lambda hook, methods, kwargs: hook.multicall(
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/callers.py", line 187, in _multicall
res = hook_impl.function(*args)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/_pytest/runner.py", line 135, in pytest_runtest_call
item.runtest()
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/_pytest/unittest.py", line 231, in runtest
self._testcase(result=self)
File "/usr/lib/python3.9/unittest/case.py", line 651, in __call__
return self.run(*args, **kwds)
File "/usr/lib/python3.9/unittest/case.py", line 592, in run
self._callTestMethod(testMethod)
File "/usr/lib/python3.9/unittest/case.py", line 550, in _callTestMethod
method()
File "/home/cmiss/Jenkins/workspace/SPARC-API-DEV/tests/test_biolucida.py", line 25, in test_get_image_info
image_info = image_info_by_image_id(1170)
File "/home/cmiss/Jenkins/workspace/SPARC-API-DEV/app/main.py", line 1160, in image_info_by_image_id
logging.error(f"Could not get image info for {image_id}", ex)
File "/usr/lib/python3.9/logging/__init__.py", line 2064, in error
root.error(msg, *args, **kwargs)
File "/usr/lib/python3.9/logging/__init__.py", line 1475, in error
self._log(ERROR, msg, args, **kwargs)
File "/usr/lib/python3.9/logging/__init__.py", line 1589, in _log
self.handle(record)
File "/usr/lib/python3.9/logging/__init__.py", line 1599, in handle
self.callHandlers(record)
File "/usr/lib/python3.9/logging/__init__.py", line 1661, in callHandlers
hdlr.handle(record)
File "/usr/lib/python3.9/logging/__init__.py", line 952, in handle
self.emit(record)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/_pytest/logging.py", line 310, in emit
logging.StreamHandler.emit(self, record)
Message: 'Could not get image info for 1170'
Arguments: (SSLError(MaxRetryError("HTTPSConnectionPool(host='sparc.biolucida.net', port=443): Max retries exceeded with url: /api/v1/image/info/1170 (Caused by SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate has expired (_ssl.c:1147)')))")),)
_____________________ BiolucidaTestCase.test_get_thumbnail _____________________
self = <test_biolucida.BiolucidaTestCase testMethod=test_get_thumbnail>
def test_get_thumbnail(self):
> thumbnail = thumbnail_by_image_id(1170)
tests/test_biolucida.py:30:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
app/main.py:1150: in thumbnail_by_image_id
return abort(404, "An error occured while fetching the thumbnail")
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/werkzeug/exceptions.py:772: in abort
return _aborter(status, *args, **kwargs)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
self = <werkzeug.exceptions.Aborter object at 0x7ffbeddd2ac0>, code = 404
args = ('An error occured while fetching the thumbnail',), kwargs = {}
def __call__(self, code, *args, **kwargs):
if not args and not kwargs and not isinstance(code, integer_types):
raise HTTPException(response=code)
if code not in self.mapping:
raise LookupError("no exception for %r" % code)
> raise self.mapping[code](*args, **kwargs)
E werkzeug.exceptions.NotFound: 404 Not Found: An error occured while fetching the thumbnail
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/werkzeug/exceptions.py:753: NotFound
----------------------------- Captured stderr call -----------------------------
--- Logging error ---
Traceback (most recent call last):
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py", line 699, in urlopen
httplib_response = self._make_request(
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py", line 382, in _make_request
self._validate_conn(conn)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py", line 1010, in _validate_conn
conn.connect()
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connection.py", line 411, in connect
self.sock = ssl_wrap_socket(
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/util/ssl_.py", line 428, in ssl_wrap_socket
ssl_sock = _ssl_wrap_socket_impl(
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/util/ssl_.py", line 472, in _ssl_wrap_socket_impl
return ssl_context.wrap_socket(sock, server_hostname=server_hostname)
File "/usr/lib/python3.9/ssl.py", line 501, in wrap_socket
return self.sslsocket_class._create(
File "/usr/lib/python3.9/ssl.py", line 1074, in _create
self.do_handshake()
File "/usr/lib/python3.9/ssl.py", line 1343, in do_handshake
self._sslobj.do_handshake()
ssl.SSLCertVerificationError: [SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate has expired (_ssl.c:1147)
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/adapters.py", line 486, in send
resp = conn.urlopen(
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py", line 755, in urlopen
retries = retries.increment(
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/util/retry.py", line 574, in increment
raise MaxRetryError(_pool, url, error or ResponseError(cause))
urllib3.exceptions.MaxRetryError: HTTPSConnectionPool(host='sparc.biolucida.net', port=443): Max retries exceeded with url: /api/v1/thumbnail/1170 (Caused by SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate has expired (_ssl.c:1147)')))
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/home/cmiss/Jenkins/workspace/SPARC-API-DEV/app/main.py", line 1135, in thumbnail_by_image_id
response = requests.request("GET", url, headers=headers)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/api.py", line 59, in request
return session.request(method=method, url=url, **kwargs)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/sessions.py", line 589, in request
resp = self.send(prep, **send_kwargs)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/sessions.py", line 703, in send
r = adapter.send(request, **kwargs)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/adapters.py", line 517, in send
raise SSLError(e, request=request)
requests.exceptions.SSLError: HTTPSConnectionPool(host='sparc.biolucida.net', port=443): Max retries exceeded with url: /api/v1/thumbnail/1170 (Caused by SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate has expired (_ssl.c:1147)')))
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/usr/lib/python3.9/logging/__init__.py", line 1083, in emit
msg = self.format(record)
File "/usr/lib/python3.9/logging/__init__.py", line 927, in format
return fmt.format(record)
File "/usr/lib/python3.9/logging/__init__.py", line 663, in format
record.message = record.getMessage()
File "/usr/lib/python3.9/logging/__init__.py", line 367, in getMessage
msg = msg % self.args
TypeError: not all arguments converted during string formatting
Call stack:
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/bin/pytest", line 8, in <module>
sys.exit(main())
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/_pytest/config/__init__.py", line 124, in main
ret = config.hook.pytest_cmdline_main(
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/hooks.py", line 286, in __call__
return self._hookexec(self, self.get_hookimpls(), kwargs)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/manager.py", line 93, in _hookexec
return self._inner_hookexec(hook, methods, kwargs)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/manager.py", line 84, in <lambda>
self._inner_hookexec = lambda hook, methods, kwargs: hook.multicall(
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/callers.py", line 187, in _multicall
res = hook_impl.function(*args)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/_pytest/main.py", line 240, in pytest_cmdline_main
return wrap_session(config, _main)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/_pytest/main.py", line 191, in wrap_session
session.exitstatus = doit(config, session) or 0
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/_pytest/main.py", line 247, in _main
config.hook.pytest_runtestloop(session=session)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/hooks.py", line 286, in __call__
return self._hookexec(self, self.get_hookimpls(), kwargs)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/manager.py", line 93, in _hookexec
return self._inner_hookexec(hook, methods, kwargs)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/manager.py", line 84, in <lambda>
self._inner_hookexec = lambda hook, methods, kwargs: hook.multicall(
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/callers.py", line 187, in _multicall
res = hook_impl.function(*args)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/_pytest/main.py", line 272, in pytest_runtestloop
item.config.hook.pytest_runtest_protocol(item=item, nextitem=nextitem)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/hooks.py", line 286, in __call__
return self._hookexec(self, self.get_hookimpls(), kwargs)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/manager.py", line 93, in _hookexec
return self._inner_hookexec(hook, methods, kwargs)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/manager.py", line 84, in <lambda>
self._inner_hookexec = lambda hook, methods, kwargs: hook.multicall(
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/callers.py", line 187, in _multicall
res = hook_impl.function(*args)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/_pytest/runner.py", line 85, in pytest_runtest_protocol
runtestprotocol(item, nextitem=nextitem)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/_pytest/runner.py", line 100, in runtestprotocol
reports.append(call_and_report(item, "call", log))
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/_pytest/runner.py", line 186, in call_and_report
call = call_runtest_hook(item, when, **kwds)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/_pytest/runner.py", line 216, in call_runtest_hook
return CallInfo.from_call(
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/_pytest/runner.py", line 244, in from_call
result = func()
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/_pytest/runner.py", line 217, in <lambda>
lambda: ihook(item=item, **kwds), when=when, reraise=reraise
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/hooks.py", line 286, in __call__
return self._hookexec(self, self.get_hookimpls(), kwargs)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/manager.py", line 93, in _hookexec
return self._inner_hookexec(hook, methods, kwargs)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/manager.py", line 84, in <lambda>
self._inner_hookexec = lambda hook, methods, kwargs: hook.multicall(
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/callers.py", line 187, in _multicall
res = hook_impl.function(*args)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/_pytest/runner.py", line 135, in pytest_runtest_call
item.runtest()
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/_pytest/unittest.py", line 231, in runtest
self._testcase(result=self)
File "/usr/lib/python3.9/unittest/case.py", line 651, in __call__
return self.run(*args, **kwds)
File "/usr/lib/python3.9/unittest/case.py", line 592, in run
self._callTestMethod(testMethod)
File "/usr/lib/python3.9/unittest/case.py", line 550, in _callTestMethod
method()
File "/home/cmiss/Jenkins/workspace/SPARC-API-DEV/tests/test_biolucida.py", line 30, in test_get_thumbnail
thumbnail = thumbnail_by_image_id(1170)
File "/home/cmiss/Jenkins/workspace/SPARC-API-DEV/app/main.py", line 1149, in thumbnail_by_image_id
logging.error(f"Could not get the thumbnail for {image_id}", ex)
Message: 'Could not get the thumbnail for 1170'
Arguments: (SSLError(MaxRetryError("HTTPSConnectionPool(host='sparc.biolucida.net', port=443): Max retries exceeded with url: /api/v1/thumbnail/1170 (Caused by SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate has expired (_ssl.c:1147)')))")),)
--- Logging error ---
Traceback (most recent call last):
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py", line 699, in urlopen
httplib_response = self._make_request(
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py", line 382, in _make_request
self._validate_conn(conn)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py", line 1010, in _validate_conn
conn.connect()
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connection.py", line 411, in connect
self.sock = ssl_wrap_socket(
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/util/ssl_.py", line 428, in ssl_wrap_socket
ssl_sock = _ssl_wrap_socket_impl(
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/util/ssl_.py", line 472, in _ssl_wrap_socket_impl
return ssl_context.wrap_socket(sock, server_hostname=server_hostname)
File "/usr/lib/python3.9/ssl.py", line 501, in wrap_socket
return self.sslsocket_class._create(
File "/usr/lib/python3.9/ssl.py", line 1074, in _create
self.do_handshake()
File "/usr/lib/python3.9/ssl.py", line 1343, in do_handshake
self._sslobj.do_handshake()
ssl.SSLCertVerificationError: [SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate has expired (_ssl.c:1147)
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/adapters.py", line 486, in send
resp = conn.urlopen(
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py", line 755, in urlopen
retries = retries.increment(
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/util/retry.py", line 574, in increment
raise MaxRetryError(_pool, url, error or ResponseError(cause))
urllib3.exceptions.MaxRetryError: HTTPSConnectionPool(host='sparc.biolucida.net', port=443): Max retries exceeded with url: /api/v1/thumbnail/1170 (Caused by SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate has expired (_ssl.c:1147)')))
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/home/cmiss/Jenkins/workspace/SPARC-API-DEV/app/main.py", line 1135, in thumbnail_by_image_id
response = requests.request("GET", url, headers=headers)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/api.py", line 59, in request
return session.request(method=method, url=url, **kwargs)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/sessions.py", line 589, in request
resp = self.send(prep, **send_kwargs)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/sessions.py", line 703, in send
r = adapter.send(request, **kwargs)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/adapters.py", line 517, in send
raise SSLError(e, request=request)
requests.exceptions.SSLError: HTTPSConnectionPool(host='sparc.biolucida.net', port=443): Max retries exceeded with url: /api/v1/thumbnail/1170 (Caused by SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate has expired (_ssl.c:1147)')))
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/usr/lib/python3.9/logging/__init__.py", line 1083, in emit
msg = self.format(record)
File "/usr/lib/python3.9/logging/__init__.py", line 927, in format
return fmt.format(record)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/_pytest/logging.py", line 74, in format
return super().format(record)
File "/usr/lib/python3.9/logging/__init__.py", line 663, in format
record.message = record.getMessage()
File "/usr/lib/python3.9/logging/__init__.py", line 367, in getMessage
msg = msg % self.args
TypeError: not all arguments converted during string formatting
Call stack:
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/bin/pytest", line 8, in <module>
sys.exit(main())
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/_pytest/config/__init__.py", line 124, in main
ret = config.hook.pytest_cmdline_main(
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/hooks.py", line 286, in __call__
return self._hookexec(self, self.get_hookimpls(), kwargs)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/manager.py", line 93, in _hookexec
return self._inner_hookexec(hook, methods, kwargs)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/manager.py", line 84, in <lambda>
self._inner_hookexec = lambda hook, methods, kwargs: hook.multicall(
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/callers.py", line 187, in _multicall
res = hook_impl.function(*args)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/_pytest/main.py", line 240, in pytest_cmdline_main
return wrap_session(config, _main)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/_pytest/main.py", line 191, in wrap_session
session.exitstatus = doit(config, session) or 0
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/_pytest/main.py", line 247, in _main
config.hook.pytest_runtestloop(session=session)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/hooks.py", line 286, in __call__
return self._hookexec(self, self.get_hookimpls(), kwargs)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/manager.py", line 93, in _hookexec
return self._inner_hookexec(hook, methods, kwargs)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/manager.py", line 84, in <lambda>
self._inner_hookexec = lambda hook, methods, kwargs: hook.multicall(
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/callers.py", line 187, in _multicall
res = hook_impl.function(*args)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/_pytest/main.py", line 272, in pytest_runtestloop
item.config.hook.pytest_runtest_protocol(item=item, nextitem=nextitem)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/hooks.py", line 286, in __call__
return self._hookexec(self, self.get_hookimpls(), kwargs)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/manager.py", line 93, in _hookexec
return self._inner_hookexec(hook, methods, kwargs)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/manager.py", line 84, in <lambda>
self._inner_hookexec = lambda hook, methods, kwargs: hook.multicall(
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/callers.py", line 187, in _multicall
res = hook_impl.function(*args)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/_pytest/runner.py", line 85, in pytest_runtest_protocol
runtestprotocol(item, nextitem=nextitem)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/_pytest/runner.py", line 100, in runtestprotocol
reports.append(call_and_report(item, "call", log))
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/_pytest/runner.py", line 186, in call_and_report
call = call_runtest_hook(item, when, **kwds)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/_pytest/runner.py", line 216, in call_runtest_hook
return CallInfo.from_call(
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/_pytest/runner.py", line 244, in from_call
result = func()
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/_pytest/runner.py", line 217, in <lambda>
lambda: ihook(item=item, **kwds), when=when, reraise=reraise
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/hooks.py", line 286, in __call__
return self._hookexec(self, self.get_hookimpls(), kwargs)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/manager.py", line 93, in _hookexec
return self._inner_hookexec(hook, methods, kwargs)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/manager.py", line 84, in <lambda>
self._inner_hookexec = lambda hook, methods, kwargs: hook.multicall(
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/callers.py", line 187, in _multicall
res = hook_impl.function(*args)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/_pytest/runner.py", line 135, in pytest_runtest_call
item.runtest()
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/_pytest/unittest.py", line 231, in runtest
self._testcase(result=self)
File "/usr/lib/python3.9/unittest/case.py", line 651, in __call__
return self.run(*args, **kwds)
File "/usr/lib/python3.9/unittest/case.py", line 592, in run
self._callTestMethod(testMethod)
File "/usr/lib/python3.9/unittest/case.py", line 550, in _callTestMethod
method()
File "/home/cmiss/Jenkins/workspace/SPARC-API-DEV/tests/test_biolucida.py", line 30, in test_get_thumbnail
thumbnail = thumbnail_by_image_id(1170)
File "/home/cmiss/Jenkins/workspace/SPARC-API-DEV/app/main.py", line 1149, in thumbnail_by_image_id
logging.error(f"Could not get the thumbnail for {image_id}", ex)
File "/usr/lib/python3.9/logging/__init__.py", line 2064, in error
root.error(msg, *args, **kwargs)
File "/usr/lib/python3.9/logging/__init__.py", line 1475, in error
self._log(ERROR, msg, args, **kwargs)
File "/usr/lib/python3.9/logging/__init__.py", line 1589, in _log
self.handle(record)
File "/usr/lib/python3.9/logging/__init__.py", line 1599, in handle
self.callHandlers(record)
File "/usr/lib/python3.9/logging/__init__.py", line 1661, in callHandlers
hdlr.handle(record)
File "/usr/lib/python3.9/logging/__init__.py", line 952, in handle
self.emit(record)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/_pytest/logging.py", line 310, in emit
logging.StreamHandler.emit(self, record)
Message: 'Could not get the thumbnail for 1170'
Arguments: (SSLError(MaxRetryError("HTTPSConnectionPool(host='sparc.biolucida.net', port=443): Max retries exceeded with url: /api/v1/thumbnail/1170 (Caused by SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate has expired (_ssl.c:1147)')))")),)
_______________________ BiolucidaTestCase.test_old_token _______________________
self = <test_biolucida.BiolucidaTestCase testMethod=test_old_token>
def test_old_token(self):
bl = Biolucida()
bl.set_token('a20f155e818fbfebbb03275f30f87697')
> thumbnail = thumbnail_by_image_id(1170)
tests/test_biolucida.py:36:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
app/main.py:1150: in thumbnail_by_image_id
return abort(404, "An error occured while fetching the thumbnail")
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/werkzeug/exceptions.py:772: in abort
return _aborter(status, *args, **kwargs)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
self = <werkzeug.exceptions.Aborter object at 0x7ffbeddd2ac0>, code = 404
args = ('An error occured while fetching the thumbnail',), kwargs = {}
def __call__(self, code, *args, **kwargs):
if not args and not kwargs and not isinstance(code, integer_types):
raise HTTPException(response=code)
if code not in self.mapping:
raise LookupError("no exception for %r" % code)
> raise self.mapping[code](*args, **kwargs)
E werkzeug.exceptions.NotFound: 404 Not Found: An error occured while fetching the thumbnail
../../shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/werkzeug/exceptions.py:753: NotFound
----------------------------- Captured stderr call -----------------------------
--- Logging error ---
Traceback (most recent call last):
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py", line 699, in urlopen
httplib_response = self._make_request(
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py", line 382, in _make_request
self._validate_conn(conn)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py", line 1010, in _validate_conn
conn.connect()
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connection.py", line 411, in connect
self.sock = ssl_wrap_socket(
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/util/ssl_.py", line 428, in ssl_wrap_socket
ssl_sock = _ssl_wrap_socket_impl(
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/util/ssl_.py", line 472, in _ssl_wrap_socket_impl
return ssl_context.wrap_socket(sock, server_hostname=server_hostname)
File "/usr/lib/python3.9/ssl.py", line 501, in wrap_socket
return self.sslsocket_class._create(
File "/usr/lib/python3.9/ssl.py", line 1074, in _create
self.do_handshake()
File "/usr/lib/python3.9/ssl.py", line 1343, in do_handshake
self._sslobj.do_handshake()
ssl.SSLCertVerificationError: [SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate has expired (_ssl.c:1147)
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/adapters.py", line 486, in send
resp = conn.urlopen(
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py", line 755, in urlopen
retries = retries.increment(
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/util/retry.py", line 574, in increment
raise MaxRetryError(_pool, url, error or ResponseError(cause))
urllib3.exceptions.MaxRetryError: HTTPSConnectionPool(host='sparc.biolucida.net', port=443): Max retries exceeded with url: /api/v1/thumbnail/1170 (Caused by SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate has expired (_ssl.c:1147)')))
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/home/cmiss/Jenkins/workspace/SPARC-API-DEV/app/main.py", line 1135, in thumbnail_by_image_id
response = requests.request("GET", url, headers=headers)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/api.py", line 59, in request
return session.request(method=method, url=url, **kwargs)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/sessions.py", line 589, in request
resp = self.send(prep, **send_kwargs)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/sessions.py", line 703, in send
r = adapter.send(request, **kwargs)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/adapters.py", line 517, in send
raise SSLError(e, request=request)
requests.exceptions.SSLError: HTTPSConnectionPool(host='sparc.biolucida.net', port=443): Max retries exceeded with url: /api/v1/thumbnail/1170 (Caused by SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate has expired (_ssl.c:1147)')))
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/usr/lib/python3.9/logging/__init__.py", line 1083, in emit
msg = self.format(record)
File "/usr/lib/python3.9/logging/__init__.py", line 927, in format
return fmt.format(record)
File "/usr/lib/python3.9/logging/__init__.py", line 663, in format
record.message = record.getMessage()
File "/usr/lib/python3.9/logging/__init__.py", line 367, in getMessage
msg = msg % self.args
TypeError: not all arguments converted during string formatting
Call stack:
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/bin/pytest", line 8, in <module>
sys.exit(main())
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/_pytest/config/__init__.py", line 124, in main
ret = config.hook.pytest_cmdline_main(
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/hooks.py", line 286, in __call__
return self._hookexec(self, self.get_hookimpls(), kwargs)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/manager.py", line 93, in _hookexec
return self._inner_hookexec(hook, methods, kwargs)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/manager.py", line 84, in <lambda>
self._inner_hookexec = lambda hook, methods, kwargs: hook.multicall(
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/callers.py", line 187, in _multicall
res = hook_impl.function(*args)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/_pytest/main.py", line 240, in pytest_cmdline_main
return wrap_session(config, _main)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/_pytest/main.py", line 191, in wrap_session
session.exitstatus = doit(config, session) or 0
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/_pytest/main.py", line 247, in _main
config.hook.pytest_runtestloop(session=session)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/hooks.py", line 286, in __call__
return self._hookexec(self, self.get_hookimpls(), kwargs)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/manager.py", line 93, in _hookexec
return self._inner_hookexec(hook, methods, kwargs)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/manager.py", line 84, in <lambda>
self._inner_hookexec = lambda hook, methods, kwargs: hook.multicall(
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/callers.py", line 187, in _multicall
res = hook_impl.function(*args)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/_pytest/main.py", line 272, in pytest_runtestloop
item.config.hook.pytest_runtest_protocol(item=item, nextitem=nextitem)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/hooks.py", line 286, in __call__
return self._hookexec(self, self.get_hookimpls(), kwargs)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/manager.py", line 93, in _hookexec
return self._inner_hookexec(hook, methods, kwargs)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/manager.py", line 84, in <lambda>
self._inner_hookexec = lambda hook, methods, kwargs: hook.multicall(
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/callers.py", line 187, in _multicall
res = hook_impl.function(*args)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/_pytest/runner.py", line 85, in pytest_runtest_protocol
runtestprotocol(item, nextitem=nextitem)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/_pytest/runner.py", line 100, in runtestprotocol
reports.append(call_and_report(item, "call", log))
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/_pytest/runner.py", line 186, in call_and_report
call = call_runtest_hook(item, when, **kwds)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/_pytest/runner.py", line 216, in call_runtest_hook
return CallInfo.from_call(
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/_pytest/runner.py", line 244, in from_call
result = func()
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/_pytest/runner.py", line 217, in <lambda>
lambda: ihook(item=item, **kwds), when=when, reraise=reraise
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/hooks.py", line 286, in __call__
return self._hookexec(self, self.get_hookimpls(), kwargs)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/manager.py", line 93, in _hookexec
return self._inner_hookexec(hook, methods, kwargs)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/manager.py", line 84, in <lambda>
self._inner_hookexec = lambda hook, methods, kwargs: hook.multicall(
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/callers.py", line 187, in _multicall
res = hook_impl.function(*args)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/_pytest/runner.py", line 135, in pytest_runtest_call
item.runtest()
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/_pytest/unittest.py", line 231, in runtest
self._testcase(result=self)
File "/usr/lib/python3.9/unittest/case.py", line 651, in __call__
return self.run(*args, **kwds)
File "/usr/lib/python3.9/unittest/case.py", line 592, in run
self._callTestMethod(testMethod)
File "/usr/lib/python3.9/unittest/case.py", line 550, in _callTestMethod
method()
File "/home/cmiss/Jenkins/workspace/SPARC-API-DEV/tests/test_biolucida.py", line 36, in test_old_token
thumbnail = thumbnail_by_image_id(1170)
File "/home/cmiss/Jenkins/workspace/SPARC-API-DEV/app/main.py", line 1149, in thumbnail_by_image_id
logging.error(f"Could not get the thumbnail for {image_id}", ex)
Message: 'Could not get the thumbnail for 1170'
Arguments: (SSLError(MaxRetryError("HTTPSConnectionPool(host='sparc.biolucida.net', port=443): Max retries exceeded with url: /api/v1/thumbnail/1170 (Caused by SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate has expired (_ssl.c:1147)')))")),)
--- Logging error ---
Traceback (most recent call last):
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py", line 699, in urlopen
httplib_response = self._make_request(
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py", line 382, in _make_request
self._validate_conn(conn)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py", line 1010, in _validate_conn
conn.connect()
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connection.py", line 411, in connect
self.sock = ssl_wrap_socket(
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/util/ssl_.py", line 428, in ssl_wrap_socket
ssl_sock = _ssl_wrap_socket_impl(
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/util/ssl_.py", line 472, in _ssl_wrap_socket_impl
return ssl_context.wrap_socket(sock, server_hostname=server_hostname)
File "/usr/lib/python3.9/ssl.py", line 501, in wrap_socket
return self.sslsocket_class._create(
File "/usr/lib/python3.9/ssl.py", line 1074, in _create
self.do_handshake()
File "/usr/lib/python3.9/ssl.py", line 1343, in do_handshake
self._sslobj.do_handshake()
ssl.SSLCertVerificationError: [SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate has expired (_ssl.c:1147)
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/adapters.py", line 486, in send
resp = conn.urlopen(
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py", line 755, in urlopen
retries = retries.increment(
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/util/retry.py", line 574, in increment
raise MaxRetryError(_pool, url, error or ResponseError(cause))
urllib3.exceptions.MaxRetryError: HTTPSConnectionPool(host='sparc.biolucida.net', port=443): Max retries exceeded with url: /api/v1/thumbnail/1170 (Caused by SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate has expired (_ssl.c:1147)')))
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/home/cmiss/Jenkins/workspace/SPARC-API-DEV/app/main.py", line 1135, in thumbnail_by_image_id
response = requests.request("GET", url, headers=headers)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/api.py", line 59, in request
return session.request(method=method, url=url, **kwargs)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/sessions.py", line 589, in request
resp = self.send(prep, **send_kwargs)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/sessions.py", line 703, in send
r = adapter.send(request, **kwargs)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/adapters.py", line 517, in send
raise SSLError(e, request=request)
requests.exceptions.SSLError: HTTPSConnectionPool(host='sparc.biolucida.net', port=443): Max retries exceeded with url: /api/v1/thumbnail/1170 (Caused by SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate has expired (_ssl.c:1147)')))
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/usr/lib/python3.9/logging/__init__.py", line 1083, in emit
msg = self.format(record)
File "/usr/lib/python3.9/logging/__init__.py", line 927, in format
return fmt.format(record)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/_pytest/logging.py", line 74, in format
return super().format(record)
File "/usr/lib/python3.9/logging/__init__.py", line 663, in format
record.message = record.getMessage()
File "/usr/lib/python3.9/logging/__init__.py", line 367, in getMessage
msg = msg % self.args
TypeError: not all arguments converted during string formatting
Call stack:
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/bin/pytest", line 8, in <module>
sys.exit(main())
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/_pytest/config/__init__.py", line 124, in main
ret = config.hook.pytest_cmdline_main(
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/hooks.py", line 286, in __call__
return self._hookexec(self, self.get_hookimpls(), kwargs)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/manager.py", line 93, in _hookexec
return self._inner_hookexec(hook, methods, kwargs)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/manager.py", line 84, in <lambda>
self._inner_hookexec = lambda hook, methods, kwargs: hook.multicall(
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/callers.py", line 187, in _multicall
res = hook_impl.function(*args)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/_pytest/main.py", line 240, in pytest_cmdline_main
return wrap_session(config, _main)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/_pytest/main.py", line 191, in wrap_session
session.exitstatus = doit(config, session) or 0
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/_pytest/main.py", line 247, in _main
config.hook.pytest_runtestloop(session=session)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/hooks.py", line 286, in __call__
return self._hookexec(self, self.get_hookimpls(), kwargs)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/manager.py", line 93, in _hookexec
return self._inner_hookexec(hook, methods, kwargs)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/manager.py", line 84, in <lambda>
self._inner_hookexec = lambda hook, methods, kwargs: hook.multicall(
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/callers.py", line 187, in _multicall
res = hook_impl.function(*args)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/_pytest/main.py", line 272, in pytest_runtestloop
item.config.hook.pytest_runtest_protocol(item=item, nextitem=nextitem)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/hooks.py", line 286, in __call__
return self._hookexec(self, self.get_hookimpls(), kwargs)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/manager.py", line 93, in _hookexec
return self._inner_hookexec(hook, methods, kwargs)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/manager.py", line 84, in <lambda>
self._inner_hookexec = lambda hook, methods, kwargs: hook.multicall(
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/callers.py", line 187, in _multicall
res = hook_impl.function(*args)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/_pytest/runner.py", line 85, in pytest_runtest_protocol
runtestprotocol(item, nextitem=nextitem)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/_pytest/runner.py", line 100, in runtestprotocol
reports.append(call_and_report(item, "call", log))
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/_pytest/runner.py", line 186, in call_and_report
call = call_runtest_hook(item, when, **kwds)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/_pytest/runner.py", line 216, in call_runtest_hook
return CallInfo.from_call(
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/_pytest/runner.py", line 244, in from_call
result = func()
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/_pytest/runner.py", line 217, in <lambda>
lambda: ihook(item=item, **kwds), when=when, reraise=reraise
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/hooks.py", line 286, in __call__
return self._hookexec(self, self.get_hookimpls(), kwargs)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/manager.py", line 93, in _hookexec
return self._inner_hookexec(hook, methods, kwargs)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/manager.py", line 84, in <lambda>
self._inner_hookexec = lambda hook, methods, kwargs: hook.multicall(
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/callers.py", line 187, in _multicall
res = hook_impl.function(*args)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/_pytest/runner.py", line 135, in pytest_runtest_call
item.runtest()
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/_pytest/unittest.py", line 231, in runtest
self._testcase(result=self)
File "/usr/lib/python3.9/unittest/case.py", line 651, in __call__
return self.run(*args, **kwds)
File "/usr/lib/python3.9/unittest/case.py", line 592, in run
self._callTestMethod(testMethod)
File "/usr/lib/python3.9/unittest/case.py", line 550, in _callTestMethod
method()
File "/home/cmiss/Jenkins/workspace/SPARC-API-DEV/tests/test_biolucida.py", line 36, in test_old_token
thumbnail = thumbnail_by_image_id(1170)
File "/home/cmiss/Jenkins/workspace/SPARC-API-DEV/app/main.py", line 1149, in thumbnail_by_image_id
logging.error(f"Could not get the thumbnail for {image_id}", ex)
File "/usr/lib/python3.9/logging/__init__.py", line 2064, in error
root.error(msg, *args, **kwargs)
File "/usr/lib/python3.9/logging/__init__.py", line 1475, in error
self._log(ERROR, msg, args, **kwargs)
File "/usr/lib/python3.9/logging/__init__.py", line 1589, in _log
self.handle(record)
File "/usr/lib/python3.9/logging/__init__.py", line 1599, in handle
self.callHandlers(record)
File "/usr/lib/python3.9/logging/__init__.py", line 1661, in callHandlers
hdlr.handle(record)
File "/usr/lib/python3.9/logging/__init__.py", line 952, in handle
self.emit(record)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/_pytest/logging.py", line 310, in emit
logging.StreamHandler.emit(self, record)
Message: 'Could not get the thumbnail for 1170'
Arguments: (SSLError(MaxRetryError("HTTPSConnectionPool(host='sparc.biolucida.net', port=443): Max retries exceeded with url: /api/v1/thumbnail/1170 (Caused by SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate has expired (_ssl.c:1147)')))")),)
___________________________ test_image_xmp_info_2727 ___________________________
client = <FlaskClient <Flask 'app.main'>>
def test_image_xmp_info_2727(client):
r = client.get('/image_xmp_info/2727')
> assert 'pixel_width' in r.json
E TypeError: argument of type 'NoneType' is not iterable
tests/test_biolucida.py:49: TypeError
___________________________ test_image_xmp_info_1197 ___________________________
client = <FlaskClient <Flask 'app.main'>>
def test_image_xmp_info_1197(client):
r = client.get('/image_xmp_info/1197')
> assert 'pixel_width' in r.json
E TypeError: argument of type 'NoneType' is not iterable
tests/test_biolucida.py:59: TypeError
___________________________ test_image_xmp_info_850 ____________________________
client = <FlaskClient <Flask 'app.main'>>
def test_image_xmp_info_850(client):
r = client.get('/image_xmp_info/850')
> assert r.status_code == 200
E assert 400 == 200
E + where 400 = <Response streamed [400 BAD REQUEST]>.status_code
tests/test_biolucida.py:68: AssertionError
___________________________ test_image_blv_link_849 ____________________________
client = <FlaskClient <Flask 'app.main'>>
def test_image_blv_link_849(client):
r = client.get('/image_blv_link/849')
> assert r.status_code == 200
E assert 400 == 200
E + where 400 = <Response streamed [400 BAD REQUEST]>.status_code
tests/test_biolucida.py:84: AssertionError
_________________________ test_image_search_dataset_77 _________________________
client = <FlaskClient <Flask 'app.main'>>
def test_image_search_dataset_77(client):
r = client.get('/image_search/77')
> assert 'dataset_images' in r.json
E AssertionError: assert 'dataset_images' in {'error': 'An error occured while searching images for dataset'}
E + where {'error': 'An error occured while searching images for dataset'} = <Response 64 bytes [404 NOT FOUND]>.json
tests/test_biolucida.py:98: AssertionError
----------------------------- Captured stderr call -----------------------------
--- Logging error ---
Traceback (most recent call last):
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py", line 699, in urlopen
httplib_response = self._make_request(
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py", line 382, in _make_request
self._validate_conn(conn)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py", line 1010, in _validate_conn
conn.connect()
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connection.py", line 411, in connect
self.sock = ssl_wrap_socket(
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/util/ssl_.py", line 428, in ssl_wrap_socket
ssl_sock = _ssl_wrap_socket_impl(
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/util/ssl_.py", line 472, in _ssl_wrap_socket_impl
return ssl_context.wrap_socket(sock, server_hostname=server_hostname)
File "/usr/lib/python3.9/ssl.py", line 501, in wrap_socket
return self.sslsocket_class._create(
File "/usr/lib/python3.9/ssl.py", line 1074, in _create
self.do_handshake()
File "/usr/lib/python3.9/ssl.py", line 1343, in do_handshake
self._sslobj.do_handshake()
ssl.SSLCertVerificationError: [SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate has expired (_ssl.c:1147)
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/adapters.py", line 486, in send
resp = conn.urlopen(
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py", line 755, in urlopen
retries = retries.increment(
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/util/retry.py", line 574, in increment
raise MaxRetryError(_pool, url, error or ResponseError(cause))
urllib3.exceptions.MaxRetryError: HTTPSConnectionPool(host='sparc.biolucida.net', port=443): Max retries exceeded with url: /api/v1/imagemap/search_dataset/discover/77 (Caused by SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate has expired (_ssl.c:1147)')))
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/home/cmiss/Jenkins/workspace/SPARC-API-DEV/app/main.py", line 1168, in image_search_by_dataset_id
response = requests.request("GET", url)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/api.py", line 59, in request
return session.request(method=method, url=url, **kwargs)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/sessions.py", line 589, in request
resp = self.send(prep, **send_kwargs)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/sessions.py", line 703, in send
r = adapter.send(request, **kwargs)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/adapters.py", line 517, in send
raise SSLError(e, request=request)
requests.exceptions.SSLError: HTTPSConnectionPool(host='sparc.biolucida.net', port=443): Max retries exceeded with url: /api/v1/imagemap/search_dataset/discover/77 (Caused by SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate has expired (_ssl.c:1147)')))
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/usr/lib/python3.9/logging/__init__.py", line 1083, in emit
msg = self.format(record)
File "/usr/lib/python3.9/logging/__init__.py", line 927, in format
return fmt.format(record)
File "/usr/lib/python3.9/logging/__init__.py", line 663, in format
record.message = record.getMessage()
File "/usr/lib/python3.9/logging/__init__.py", line 367, in getMessage
msg = msg % self.args
TypeError: not all arguments converted during string formatting
Call stack:
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/bin/pytest", line 8, in <module>
sys.exit(main())
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/_pytest/config/__init__.py", line 124, in main
ret = config.hook.pytest_cmdline_main(
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/hooks.py", line 286, in __call__
return self._hookexec(self, self.get_hookimpls(), kwargs)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/manager.py", line 93, in _hookexec
return self._inner_hookexec(hook, methods, kwargs)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/manager.py", line 84, in <lambda>
self._inner_hookexec = lambda hook, methods, kwargs: hook.multicall(
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/callers.py", line 187, in _multicall
res = hook_impl.function(*args)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/_pytest/main.py", line 240, in pytest_cmdline_main
return wrap_session(config, _main)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/_pytest/main.py", line 191, in wrap_session
session.exitstatus = doit(config, session) or 0
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/_pytest/main.py", line 247, in _main
config.hook.pytest_runtestloop(session=session)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/hooks.py", line 286, in __call__
return self._hookexec(self, self.get_hookimpls(), kwargs)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/manager.py", line 93, in _hookexec
return self._inner_hookexec(hook, methods, kwargs)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/manager.py", line 84, in <lambda>
self._inner_hookexec = lambda hook, methods, kwargs: hook.multicall(
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/callers.py", line 187, in _multicall
res = hook_impl.function(*args)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/_pytest/main.py", line 272, in pytest_runtestloop
item.config.hook.pytest_runtest_protocol(item=item, nextitem=nextitem)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/hooks.py", line 286, in __call__
return self._hookexec(self, self.get_hookimpls(), kwargs)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/manager.py", line 93, in _hookexec
return self._inner_hookexec(hook, methods, kwargs)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/manager.py", line 84, in <lambda>
self._inner_hookexec = lambda hook, methods, kwargs: hook.multicall(
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/callers.py", line 187, in _multicall
res = hook_impl.function(*args)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/_pytest/runner.py", line 85, in pytest_runtest_protocol
runtestprotocol(item, nextitem=nextitem)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/_pytest/runner.py", line 100, in runtestprotocol
reports.append(call_and_report(item, "call", log))
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/_pytest/runner.py", line 186, in call_and_report
call = call_runtest_hook(item, when, **kwds)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/_pytest/runner.py", line 216, in call_runtest_hook
return CallInfo.from_call(
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/_pytest/runner.py", line 244, in from_call
result = func()
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/_pytest/runner.py", line 217, in <lambda>
lambda: ihook(item=item, **kwds), when=when, reraise=reraise
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/hooks.py", line 286, in __call__
return self._hookexec(self, self.get_hookimpls(), kwargs)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/manager.py", line 93, in _hookexec
return self._inner_hookexec(hook, methods, kwargs)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/manager.py", line 84, in <lambda>
self._inner_hookexec = lambda hook, methods, kwargs: hook.multicall(
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/callers.py", line 187, in _multicall
res = hook_impl.function(*args)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/_pytest/runner.py", line 135, in pytest_runtest_call
item.runtest()
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/_pytest/python.py", line 1477, in runtest
self.ihook.pytest_pyfunc_call(pyfuncitem=self)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/hooks.py", line 286, in __call__
return self._hookexec(self, self.get_hookimpls(), kwargs)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/manager.py", line 93, in _hookexec
return self._inner_hookexec(hook, methods, kwargs)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/manager.py", line 84, in <lambda>
self._inner_hookexec = lambda hook, methods, kwargs: hook.multicall(
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/callers.py", line 187, in _multicall
res = hook_impl.function(*args)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/_pytest/python.py", line 182, in pytest_pyfunc_call
result = testfunction(**testargs)
File "/home/cmiss/Jenkins/workspace/SPARC-API-DEV/tests/test_biolucida.py", line 96, in test_image_search_dataset_77
r = client.get('/image_search/77')
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/werkzeug/test.py", line 1029, in get
return self.open(*args, **kw)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/testing.py", line 222, in open
return Client.open(
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/werkzeug/test.py", line 993, in open
response = self.run_wsgi_app(environ.copy(), buffered=buffered)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/werkzeug/test.py", line 884, in run_wsgi_app
rv = run_wsgi_app(self.application, environ, buffered=buffered)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/werkzeug/test.py", line 1119, in run_wsgi_app
app_rv = app(environ, start_response)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py", line 2463, in __call__
return self.wsgi_app(environ, start_response)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py", line 2446, in wsgi_app
response = self.full_dispatch_request()
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py", line 1949, in full_dispatch_request
rv = self.dispatch_request()
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py", line 1935, in dispatch_request
return self.view_functions[rule.endpoint](**req.view_args)
File "/home/cmiss/Jenkins/workspace/SPARC-API-DEV/app/main.py", line 1171, in image_search_by_dataset_id
logging.error(f"Could not search images for dataset {dataset_id}", ex)
Message: 'Could not search images for dataset 77'
Arguments: (SSLError(MaxRetryError("HTTPSConnectionPool(host='sparc.biolucida.net', port=443): Max retries exceeded with url: /api/v1/imagemap/search_dataset/discover/77 (Caused by SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate has expired (_ssl.c:1147)')))")),)
--- Logging error ---
Traceback (most recent call last):
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py", line 699, in urlopen
httplib_response = self._make_request(
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py", line 382, in _make_request
self._validate_conn(conn)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py", line 1010, in _validate_conn
conn.connect()
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connection.py", line 411, in connect
self.sock = ssl_wrap_socket(
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/util/ssl_.py", line 428, in ssl_wrap_socket
ssl_sock = _ssl_wrap_socket_impl(
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/util/ssl_.py", line 472, in _ssl_wrap_socket_impl
return ssl_context.wrap_socket(sock, server_hostname=server_hostname)
File "/usr/lib/python3.9/ssl.py", line 501, in wrap_socket
return self.sslsocket_class._create(
File "/usr/lib/python3.9/ssl.py", line 1074, in _create
self.do_handshake()
File "/usr/lib/python3.9/ssl.py", line 1343, in do_handshake
self._sslobj.do_handshake()
ssl.SSLCertVerificationError: [SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate has expired (_ssl.c:1147)
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/adapters.py", line 486, in send
resp = conn.urlopen(
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py", line 755, in urlopen
retries = retries.increment(
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/util/retry.py", line 574, in increment
raise MaxRetryError(_pool, url, error or ResponseError(cause))
urllib3.exceptions.MaxRetryError: HTTPSConnectionPool(host='sparc.biolucida.net', port=443): Max retries exceeded with url: /api/v1/imagemap/search_dataset/discover/77 (Caused by SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate has expired (_ssl.c:1147)')))
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/home/cmiss/Jenkins/workspace/SPARC-API-DEV/app/main.py", line 1168, in image_search_by_dataset_id
response = requests.request("GET", url)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/api.py", line 59, in request
return session.request(method=method, url=url, **kwargs)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/sessions.py", line 589, in request
resp = self.send(prep, **send_kwargs)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/sessions.py", line 703, in send
r = adapter.send(request, **kwargs)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/adapters.py", line 517, in send
raise SSLError(e, request=request)
requests.exceptions.SSLError: HTTPSConnectionPool(host='sparc.biolucida.net', port=443): Max retries exceeded with url: /api/v1/imagemap/search_dataset/discover/77 (Caused by SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate has expired (_ssl.c:1147)')))
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/usr/lib/python3.9/logging/__init__.py", line 1083, in emit
msg = self.format(record)
File "/usr/lib/python3.9/logging/__init__.py", line 927, in format
return fmt.format(record)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/_pytest/logging.py", line 74, in format
return super().format(record)
File "/usr/lib/python3.9/logging/__init__.py", line 663, in format
record.message = record.getMessage()
File "/usr/lib/python3.9/logging/__init__.py", line 367, in getMessage
msg = msg % self.args
TypeError: not all arguments converted during string formatting
Call stack:
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/bin/pytest", line 8, in <module>
sys.exit(main())
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/_pytest/config/__init__.py", line 124, in main
ret = config.hook.pytest_cmdline_main(
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/hooks.py", line 286, in __call__
return self._hookexec(self, self.get_hookimpls(), kwargs)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/manager.py", line 93, in _hookexec
return self._inner_hookexec(hook, methods, kwargs)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/manager.py", line 84, in <lambda>
self._inner_hookexec = lambda hook, methods, kwargs: hook.multicall(
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/callers.py", line 187, in _multicall
res = hook_impl.function(*args)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/_pytest/main.py", line 240, in pytest_cmdline_main
return wrap_session(config, _main)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/_pytest/main.py", line 191, in wrap_session
session.exitstatus = doit(config, session) or 0
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/_pytest/main.py", line 247, in _main
config.hook.pytest_runtestloop(session=session)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/hooks.py", line 286, in __call__
return self._hookexec(self, self.get_hookimpls(), kwargs)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/manager.py", line 93, in _hookexec
return self._inner_hookexec(hook, methods, kwargs)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/manager.py", line 84, in <lambda>
self._inner_hookexec = lambda hook, methods, kwargs: hook.multicall(
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/callers.py", line 187, in _multicall
res = hook_impl.function(*args)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/_pytest/main.py", line 272, in pytest_runtestloop
item.config.hook.pytest_runtest_protocol(item=item, nextitem=nextitem)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/hooks.py", line 286, in __call__
return self._hookexec(self, self.get_hookimpls(), kwargs)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/manager.py", line 93, in _hookexec
return self._inner_hookexec(hook, methods, kwargs)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/manager.py", line 84, in <lambda>
self._inner_hookexec = lambda hook, methods, kwargs: hook.multicall(
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/callers.py", line 187, in _multicall
res = hook_impl.function(*args)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/_pytest/runner.py", line 85, in pytest_runtest_protocol
runtestprotocol(item, nextitem=nextitem)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/_pytest/runner.py", line 100, in runtestprotocol
reports.append(call_and_report(item, "call", log))
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/_pytest/runner.py", line 186, in call_and_report
call = call_runtest_hook(item, when, **kwds)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/_pytest/runner.py", line 216, in call_runtest_hook
return CallInfo.from_call(
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/_pytest/runner.py", line 244, in from_call
result = func()
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/_pytest/runner.py", line 217, in <lambda>
lambda: ihook(item=item, **kwds), when=when, reraise=reraise
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/hooks.py", line 286, in __call__
return self._hookexec(self, self.get_hookimpls(), kwargs)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/manager.py", line 93, in _hookexec
return self._inner_hookexec(hook, methods, kwargs)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/manager.py", line 84, in <lambda>
self._inner_hookexec = lambda hook, methods, kwargs: hook.multicall(
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/callers.py", line 187, in _multicall
res = hook_impl.function(*args)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/_pytest/runner.py", line 135, in pytest_runtest_call
item.runtest()
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/_pytest/python.py", line 1477, in runtest
self.ihook.pytest_pyfunc_call(pyfuncitem=self)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/hooks.py", line 286, in __call__
return self._hookexec(self, self.get_hookimpls(), kwargs)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/manager.py", line 93, in _hookexec
return self._inner_hookexec(hook, methods, kwargs)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/manager.py", line 84, in <lambda>
self._inner_hookexec = lambda hook, methods, kwargs: hook.multicall(
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/callers.py", line 187, in _multicall
res = hook_impl.function(*args)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/_pytest/python.py", line 182, in pytest_pyfunc_call
result = testfunction(**testargs)
File "/home/cmiss/Jenkins/workspace/SPARC-API-DEV/tests/test_biolucida.py", line 96, in test_image_search_dataset_77
r = client.get('/image_search/77')
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/werkzeug/test.py", line 1029, in get
return self.open(*args, **kw)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/testing.py", line 222, in open
return Client.open(
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/werkzeug/test.py", line 993, in open
response = self.run_wsgi_app(environ.copy(), buffered=buffered)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/werkzeug/test.py", line 884, in run_wsgi_app
rv = run_wsgi_app(self.application, environ, buffered=buffered)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/werkzeug/test.py", line 1119, in run_wsgi_app
app_rv = app(environ, start_response)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py", line 2463, in __call__
return self.wsgi_app(environ, start_response)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py", line 2446, in wsgi_app
response = self.full_dispatch_request()
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py", line 1949, in full_dispatch_request
rv = self.dispatch_request()
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py", line 1935, in dispatch_request
return self.view_functions[rule.endpoint](**req.view_args)
File "/home/cmiss/Jenkins/workspace/SPARC-API-DEV/app/main.py", line 1171, in image_search_by_dataset_id
logging.error(f"Could not search images for dataset {dataset_id}", ex)
File "/usr/lib/python3.9/logging/__init__.py", line 2064, in error
root.error(msg, *args, **kwargs)
File "/usr/lib/python3.9/logging/__init__.py", line 1475, in error
self._log(ERROR, msg, args, **kwargs)
File "/usr/lib/python3.9/logging/__init__.py", line 1589, in _log
self.handle(record)
File "/usr/lib/python3.9/logging/__init__.py", line 1599, in handle
self.callHandlers(record)
File "/usr/lib/python3.9/logging/__init__.py", line 1661, in callHandlers
hdlr.handle(record)
File "/usr/lib/python3.9/logging/__init__.py", line 952, in handle
self.emit(record)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/_pytest/logging.py", line 310, in emit
logging.StreamHandler.emit(self, record)
Message: 'Could not search images for dataset 77'
Arguments: (SSLError(MaxRetryError("HTTPSConnectionPool(host='sparc.biolucida.net', port=443): Max retries exceeded with url: /api/v1/imagemap/search_dataset/discover/77 (Caused by SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate has expired (_ssl.c:1147)')))")),)
________________________ test_image_search_dataset_292 _________________________
client = <FlaskClient <Flask 'app.main'>>
def test_image_search_dataset_292(client):
r = client.get('/image_search/292')
> assert r.json['status'] == "failure"
E KeyError: 'status'
tests/test_biolucida.py:105: KeyError
----------------------------- Captured stderr call -----------------------------
--- Logging error ---
Traceback (most recent call last):
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py", line 699, in urlopen
httplib_response = self._make_request(
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py", line 382, in _make_request
self._validate_conn(conn)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py", line 1010, in _validate_conn
conn.connect()
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connection.py", line 411, in connect
self.sock = ssl_wrap_socket(
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/util/ssl_.py", line 428, in ssl_wrap_socket
ssl_sock = _ssl_wrap_socket_impl(
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/util/ssl_.py", line 472, in _ssl_wrap_socket_impl
return ssl_context.wrap_socket(sock, server_hostname=server_hostname)
File "/usr/lib/python3.9/ssl.py", line 501, in wrap_socket
return self.sslsocket_class._create(
File "/usr/lib/python3.9/ssl.py", line 1074, in _create
self.do_handshake()
File "/usr/lib/python3.9/ssl.py", line 1343, in do_handshake
self._sslobj.do_handshake()
ssl.SSLCertVerificationError: [SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate has expired (_ssl.c:1147)
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/adapters.py", line 486, in send
resp = conn.urlopen(
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py", line 755, in urlopen
retries = retries.increment(
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/util/retry.py", line 574, in increment
raise MaxRetryError(_pool, url, error or ResponseError(cause))
urllib3.exceptions.MaxRetryError: HTTPSConnectionPool(host='sparc.biolucida.net', port=443): Max retries exceeded with url: /api/v1/imagemap/search_dataset/discover/292 (Caused by SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate has expired (_ssl.c:1147)')))
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/home/cmiss/Jenkins/workspace/SPARC-API-DEV/app/main.py", line 1168, in image_search_by_dataset_id
response = requests.request("GET", url)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/api.py", line 59, in request
return session.request(method=method, url=url, **kwargs)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/sessions.py", line 589, in request
resp = self.send(prep, **send_kwargs)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/sessions.py", line 703, in send
r = adapter.send(request, **kwargs)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/adapters.py", line 517, in send
raise SSLError(e, request=request)
requests.exceptions.SSLError: HTTPSConnectionPool(host='sparc.biolucida.net', port=443): Max retries exceeded with url: /api/v1/imagemap/search_dataset/discover/292 (Caused by SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate has expired (_ssl.c:1147)')))
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/usr/lib/python3.9/logging/__init__.py", line 1083, in emit
msg = self.format(record)
File "/usr/lib/python3.9/logging/__init__.py", line 927, in format
return fmt.format(record)
File "/usr/lib/python3.9/logging/__init__.py", line 663, in format
record.message = record.getMessage()
File "/usr/lib/python3.9/logging/__init__.py", line 367, in getMessage
msg = msg % self.args
TypeError: not all arguments converted during string formatting
Call stack:
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/bin/pytest", line 8, in <module>
sys.exit(main())
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/_pytest/config/__init__.py", line 124, in main
ret = config.hook.pytest_cmdline_main(
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/hooks.py", line 286, in __call__
return self._hookexec(self, self.get_hookimpls(), kwargs)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/manager.py", line 93, in _hookexec
return self._inner_hookexec(hook, methods, kwargs)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/manager.py", line 84, in <lambda>
self._inner_hookexec = lambda hook, methods, kwargs: hook.multicall(
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/callers.py", line 187, in _multicall
res = hook_impl.function(*args)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/_pytest/main.py", line 240, in pytest_cmdline_main
return wrap_session(config, _main)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/_pytest/main.py", line 191, in wrap_session
session.exitstatus = doit(config, session) or 0
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/_pytest/main.py", line 247, in _main
config.hook.pytest_runtestloop(session=session)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/hooks.py", line 286, in __call__
return self._hookexec(self, self.get_hookimpls(), kwargs)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/manager.py", line 93, in _hookexec
return self._inner_hookexec(hook, methods, kwargs)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/manager.py", line 84, in <lambda>
self._inner_hookexec = lambda hook, methods, kwargs: hook.multicall(
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/callers.py", line 187, in _multicall
res = hook_impl.function(*args)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/_pytest/main.py", line 272, in pytest_runtestloop
item.config.hook.pytest_runtest_protocol(item=item, nextitem=nextitem)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/hooks.py", line 286, in __call__
return self._hookexec(self, self.get_hookimpls(), kwargs)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/manager.py", line 93, in _hookexec
return self._inner_hookexec(hook, methods, kwargs)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/manager.py", line 84, in <lambda>
self._inner_hookexec = lambda hook, methods, kwargs: hook.multicall(
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/callers.py", line 187, in _multicall
res = hook_impl.function(*args)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/_pytest/runner.py", line 85, in pytest_runtest_protocol
runtestprotocol(item, nextitem=nextitem)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/_pytest/runner.py", line 100, in runtestprotocol
reports.append(call_and_report(item, "call", log))
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/_pytest/runner.py", line 186, in call_and_report
call = call_runtest_hook(item, when, **kwds)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/_pytest/runner.py", line 216, in call_runtest_hook
return CallInfo.from_call(
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/_pytest/runner.py", line 244, in from_call
result = func()
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/_pytest/runner.py", line 217, in <lambda>
lambda: ihook(item=item, **kwds), when=when, reraise=reraise
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/hooks.py", line 286, in __call__
return self._hookexec(self, self.get_hookimpls(), kwargs)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/manager.py", line 93, in _hookexec
return self._inner_hookexec(hook, methods, kwargs)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/manager.py", line 84, in <lambda>
self._inner_hookexec = lambda hook, methods, kwargs: hook.multicall(
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/callers.py", line 187, in _multicall
res = hook_impl.function(*args)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/_pytest/runner.py", line 135, in pytest_runtest_call
item.runtest()
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/_pytest/python.py", line 1477, in runtest
self.ihook.pytest_pyfunc_call(pyfuncitem=self)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/hooks.py", line 286, in __call__
return self._hookexec(self, self.get_hookimpls(), kwargs)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/manager.py", line 93, in _hookexec
return self._inner_hookexec(hook, methods, kwargs)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/manager.py", line 84, in <lambda>
self._inner_hookexec = lambda hook, methods, kwargs: hook.multicall(
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/callers.py", line 187, in _multicall
res = hook_impl.function(*args)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/_pytest/python.py", line 182, in pytest_pyfunc_call
result = testfunction(**testargs)
File "/home/cmiss/Jenkins/workspace/SPARC-API-DEV/tests/test_biolucida.py", line 103, in test_image_search_dataset_292
r = client.get('/image_search/292')
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/werkzeug/test.py", line 1029, in get
return self.open(*args, **kw)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/testing.py", line 222, in open
return Client.open(
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/werkzeug/test.py", line 993, in open
response = self.run_wsgi_app(environ.copy(), buffered=buffered)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/werkzeug/test.py", line 884, in run_wsgi_app
rv = run_wsgi_app(self.application, environ, buffered=buffered)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/werkzeug/test.py", line 1119, in run_wsgi_app
app_rv = app(environ, start_response)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py", line 2463, in __call__
return self.wsgi_app(environ, start_response)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py", line 2446, in wsgi_app
response = self.full_dispatch_request()
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py", line 1949, in full_dispatch_request
rv = self.dispatch_request()
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py", line 1935, in dispatch_request
return self.view_functions[rule.endpoint](**req.view_args)
File "/home/cmiss/Jenkins/workspace/SPARC-API-DEV/app/main.py", line 1171, in image_search_by_dataset_id
logging.error(f"Could not search images for dataset {dataset_id}", ex)
Message: 'Could not search images for dataset 292'
Arguments: (SSLError(MaxRetryError("HTTPSConnectionPool(host='sparc.biolucida.net', port=443): Max retries exceeded with url: /api/v1/imagemap/search_dataset/discover/292 (Caused by SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate has expired (_ssl.c:1147)')))")),)
--- Logging error ---
Traceback (most recent call last):
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py", line 699, in urlopen
httplib_response = self._make_request(
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py", line 382, in _make_request
self._validate_conn(conn)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py", line 1010, in _validate_conn
conn.connect()
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connection.py", line 411, in connect
self.sock = ssl_wrap_socket(
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/util/ssl_.py", line 428, in ssl_wrap_socket
ssl_sock = _ssl_wrap_socket_impl(
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/util/ssl_.py", line 472, in _ssl_wrap_socket_impl
return ssl_context.wrap_socket(sock, server_hostname=server_hostname)
File "/usr/lib/python3.9/ssl.py", line 501, in wrap_socket
return self.sslsocket_class._create(
File "/usr/lib/python3.9/ssl.py", line 1074, in _create
self.do_handshake()
File "/usr/lib/python3.9/ssl.py", line 1343, in do_handshake
self._sslobj.do_handshake()
ssl.SSLCertVerificationError: [SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate has expired (_ssl.c:1147)
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/adapters.py", line 486, in send
resp = conn.urlopen(
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/connectionpool.py", line 755, in urlopen
retries = retries.increment(
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/urllib3/util/retry.py", line 574, in increment
raise MaxRetryError(_pool, url, error or ResponseError(cause))
urllib3.exceptions.MaxRetryError: HTTPSConnectionPool(host='sparc.biolucida.net', port=443): Max retries exceeded with url: /api/v1/imagemap/search_dataset/discover/292 (Caused by SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate has expired (_ssl.c:1147)')))
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/home/cmiss/Jenkins/workspace/SPARC-API-DEV/app/main.py", line 1168, in image_search_by_dataset_id
response = requests.request("GET", url)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/api.py", line 59, in request
return session.request(method=method, url=url, **kwargs)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/sessions.py", line 589, in request
resp = self.send(prep, **send_kwargs)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/sessions.py", line 703, in send
r = adapter.send(request, **kwargs)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/requests/adapters.py", line 517, in send
raise SSLError(e, request=request)
requests.exceptions.SSLError: HTTPSConnectionPool(host='sparc.biolucida.net', port=443): Max retries exceeded with url: /api/v1/imagemap/search_dataset/discover/292 (Caused by SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate has expired (_ssl.c:1147)')))
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/usr/lib/python3.9/logging/__init__.py", line 1083, in emit
msg = self.format(record)
File "/usr/lib/python3.9/logging/__init__.py", line 927, in format
return fmt.format(record)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/_pytest/logging.py", line 74, in format
return super().format(record)
File "/usr/lib/python3.9/logging/__init__.py", line 663, in format
record.message = record.getMessage()
File "/usr/lib/python3.9/logging/__init__.py", line 367, in getMessage
msg = msg % self.args
TypeError: not all arguments converted during string formatting
Call stack:
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/bin/pytest", line 8, in <module>
sys.exit(main())
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/_pytest/config/__init__.py", line 124, in main
ret = config.hook.pytest_cmdline_main(
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/hooks.py", line 286, in __call__
return self._hookexec(self, self.get_hookimpls(), kwargs)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/manager.py", line 93, in _hookexec
return self._inner_hookexec(hook, methods, kwargs)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/manager.py", line 84, in <lambda>
self._inner_hookexec = lambda hook, methods, kwargs: hook.multicall(
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/callers.py", line 187, in _multicall
res = hook_impl.function(*args)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/_pytest/main.py", line 240, in pytest_cmdline_main
return wrap_session(config, _main)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/_pytest/main.py", line 191, in wrap_session
session.exitstatus = doit(config, session) or 0
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/_pytest/main.py", line 247, in _main
config.hook.pytest_runtestloop(session=session)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/hooks.py", line 286, in __call__
return self._hookexec(self, self.get_hookimpls(), kwargs)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/manager.py", line 93, in _hookexec
return self._inner_hookexec(hook, methods, kwargs)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/manager.py", line 84, in <lambda>
self._inner_hookexec = lambda hook, methods, kwargs: hook.multicall(
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/callers.py", line 187, in _multicall
res = hook_impl.function(*args)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/_pytest/main.py", line 272, in pytest_runtestloop
item.config.hook.pytest_runtest_protocol(item=item, nextitem=nextitem)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/hooks.py", line 286, in __call__
return self._hookexec(self, self.get_hookimpls(), kwargs)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/manager.py", line 93, in _hookexec
return self._inner_hookexec(hook, methods, kwargs)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/manager.py", line 84, in <lambda>
self._inner_hookexec = lambda hook, methods, kwargs: hook.multicall(
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/callers.py", line 187, in _multicall
res = hook_impl.function(*args)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/_pytest/runner.py", line 85, in pytest_runtest_protocol
runtestprotocol(item, nextitem=nextitem)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/_pytest/runner.py", line 100, in runtestprotocol
reports.append(call_and_report(item, "call", log))
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/_pytest/runner.py", line 186, in call_and_report
call = call_runtest_hook(item, when, **kwds)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/_pytest/runner.py", line 216, in call_runtest_hook
return CallInfo.from_call(
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/_pytest/runner.py", line 244, in from_call
result = func()
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/_pytest/runner.py", line 217, in <lambda>
lambda: ihook(item=item, **kwds), when=when, reraise=reraise
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/hooks.py", line 286, in __call__
return self._hookexec(self, self.get_hookimpls(), kwargs)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/manager.py", line 93, in _hookexec
return self._inner_hookexec(hook, methods, kwargs)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/manager.py", line 84, in <lambda>
self._inner_hookexec = lambda hook, methods, kwargs: hook.multicall(
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/callers.py", line 187, in _multicall
res = hook_impl.function(*args)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/_pytest/runner.py", line 135, in pytest_runtest_call
item.runtest()
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/_pytest/python.py", line 1477, in runtest
self.ihook.pytest_pyfunc_call(pyfuncitem=self)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/hooks.py", line 286, in __call__
return self._hookexec(self, self.get_hookimpls(), kwargs)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/manager.py", line 93, in _hookexec
return self._inner_hookexec(hook, methods, kwargs)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/manager.py", line 84, in <lambda>
self._inner_hookexec = lambda hook, methods, kwargs: hook.multicall(
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pluggy/callers.py", line 187, in _multicall
res = hook_impl.function(*args)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/_pytest/python.py", line 182, in pytest_pyfunc_call
result = testfunction(**testargs)
File "/home/cmiss/Jenkins/workspace/SPARC-API-DEV/tests/test_biolucida.py", line 103, in test_image_search_dataset_292
r = client.get('/image_search/292')
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/werkzeug/test.py", line 1029, in get
return self.open(*args, **kw)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/testing.py", line 222, in open
return Client.open(
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/werkzeug/test.py", line 993, in open
response = self.run_wsgi_app(environ.copy(), buffered=buffered)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/werkzeug/test.py", line 884, in run_wsgi_app
rv = run_wsgi_app(self.application, environ, buffered=buffered)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/werkzeug/test.py", line 1119, in run_wsgi_app
app_rv = app(environ, start_response)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py", line 2463, in __call__
return self.wsgi_app(environ, start_response)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py", line 2446, in wsgi_app
response = self.full_dispatch_request()
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py", line 1949, in full_dispatch_request
rv = self.dispatch_request()
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask/app.py", line 1935, in dispatch_request
return self.view_functions[rule.endpoint](**req.view_args)
File "/home/cmiss/Jenkins/workspace/SPARC-API-DEV/app/main.py", line 1171, in image_search_by_dataset_id
logging.error(f"Could not search images for dataset {dataset_id}", ex)
File "/usr/lib/python3.9/logging/__init__.py", line 2064, in error
root.error(msg, *args, **kwargs)
File "/usr/lib/python3.9/logging/__init__.py", line 1475, in error
self._log(ERROR, msg, args, **kwargs)
File "/usr/lib/python3.9/logging/__init__.py", line 1589, in _log
self.handle(record)
File "/usr/lib/python3.9/logging/__init__.py", line 1599, in handle
self.callHandlers(record)
File "/usr/lib/python3.9/logging/__init__.py", line 1661, in callHandlers
hdlr.handle(record)
File "/usr/lib/python3.9/logging/__init__.py", line 952, in handle
self.emit(record)
File "/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/_pytest/logging.py", line 310, in emit
logging.StreamHandler.emit(self, record)
Message: 'Could not search images for dataset 292'
Arguments: (SSLError(MaxRetryError("HTTPSConnectionPool(host='sparc.biolucida.net', port=443): Max retries exceeded with url: /api/v1/imagemap/search_dataset/discover/292 (Caused by SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: certificate has expired (_ssl.c:1147)')))")),)
__________________________ test_neurolucida_thumbnail __________________________
client = <FlaskClient <Flask 'app.main'>>
def test_neurolucida_thumbnail(client):
query_string = {'datasetId': 37, 'version': 3, 'path': 'files/derivative/sub-54-5/TJU_3Scan_ratheart54-5_updated_06_11_19_Fiducials.xml'}
r = client.get('/thumbnail/neurolucida', query_string=query_string)
> assert r.data.decode('utf-8').startswith('iVBORw0KGgoAAAANSUhEUgAAAtAAAAIcCAIAAABQHw4EAAAgAElEQVR4Xuy9P4hjWZbu+zWv4erChVwNAyPjQq')
E assert False
E + where False = <built-in method startswith of str object at 0x7ffbe93c19d0>('iVBORw0KGgoAAAANSUhEUgAAAtAAAAIcCAIAAABQHw4EAAAgAElEQVR4Xuy9P4hjWZbu+zWv4erChVwNAyPjQq')
E + where <built-in method startswith of str object at 0x7ffbe93c19d0> = '<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 3.2 Final//EN">\n<title>400 Bad Request</title>\n<h1>Bad Request</h1>\n<p>Unable to make a connection to NEUROLUCIDA_HOST.</p>\n'.startswith
E + where '<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 3.2 Final//EN">\n<title>400 Bad Request</title>\n<h1>Bad Request</h1>\n<p>Unable to make a connection to NEUROLUCIDA_HOST.</p>\n' = <built-in method decode of bytes object at 0x7ffbe804cac0>('utf-8')
E + where <built-in method decode of bytes object at 0x7ffbe804cac0> = b'<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 3.2 Final//EN">\n<title>400 Bad Request</title>\n<h1>Bad Request</h1>\n<p>Unable to make a connection to NEUROLUCIDA_HOST.</p>\n'.decode
E + where b'<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 3.2 Final//EN">\n<title>400 Bad Request</title>\n<h1>Bad Request</h1>\n<p>Unable to make a connection to NEUROLUCIDA_HOST.</p>\n' = <Response 164 bytes [400 BAD REQUEST]>.data
tests/test_thumbnails.py:22: AssertionError
____________________ test_neurolucida_thumbnail_dataset_221 ____________________
client = <FlaskClient <Flask 'app.main'>>
def test_neurolucida_thumbnail_dataset_221(client):
query_string = {'datasetId': 221, 'version': 3, 'path': 'files/derivative/sub-M168/digital-traces/pCm168_AAV_Z_20x_191211_S3B_lx_IGS.xml'}
r = client.get('/thumbnail/neurolucida', query_string=query_string)
> assert r.data.decode('utf-8').startswith('iVBORw0KGgoAAAANSUhEUgAAAtAAAAIcCAIAAABQHw4EAAAgAElEQVR4Xuzdd3xV9f348fe569ydm')
E assert False
E + where False = <built-in method startswith of str object at 0x7ffbe84839d0>('iVBORw0KGgoAAAANSUhEUgAAAtAAAAIcCAIAAABQHw4EAAAgAElEQVR4Xuzdd3xV9f348fe569ydm')
E + where <built-in method startswith of str object at 0x7ffbe84839d0> = '<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 3.2 Final//EN">\n<title>400 Bad Request</title>\n<h1>Bad Request</h1>\n<p>Unable to make a connection to NEUROLUCIDA_HOST.</p>\n'.startswith
E + where '<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 3.2 Final//EN">\n<title>400 Bad Request</title>\n<h1>Bad Request</h1>\n<p>Unable to make a connection to NEUROLUCIDA_HOST.</p>\n' = <built-in method decode of bytes object at 0x7ffbe8029030>('utf-8')
E + where <built-in method decode of bytes object at 0x7ffbe8029030> = b'<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 3.2 Final//EN">\n<title>400 Bad Request</title>\n<h1>Bad Request</h1>\n<p>Unable to make a connection to NEUROLUCIDA_HOST.</p>\n'.decode
E + where b'<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 3.2 Final//EN">\n<title>400 Bad Request</title>\n<h1>Bad Request</h1>\n<p>Unable to make a connection to NEUROLUCIDA_HOST.</p>\n' = <Response 164 bytes [400 BAD REQUEST]>.data
tests/test_thumbnails.py:29: AssertionError
=============================== warnings summary ===============================
/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/apscheduler/__init__.py:1
/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/apscheduler/__init__.py:1: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html
from pkg_resources import get_distribution, DistributionNotFound
/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/marshmallow/__init__.py:17
/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/marshmallow/__init__.py:17: DeprecationWarning: distutils Version classes are deprecated. Use packaging.version instead.
__version_info__ = tuple(LooseVersion(__version__).version)
/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask_marshmallow/__init__.py:34
/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/flask_marshmallow/__init__.py:34: DeprecationWarning: distutils Version classes are deprecated. Use packaging.version instead.
__version_info__ = tuple(LooseVersion(__version__).version)
/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pennsieve/cache/cache_segment_pb2.py:19
/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pennsieve/cache/cache_segment_pb2.py:19: DeprecationWarning: Call to deprecated create function FileDescriptor(). Note: Create unlinked descriptors is going to go away. Please use get/find descriptors from generated code or query the descriptor_pool.
DESCRIPTOR = _descriptor.FileDescriptor(
/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pennsieve/cache/cache_segment_pb2.py:36
/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pennsieve/cache/cache_segment_pb2.py:36: DeprecationWarning: Call to deprecated create function FieldDescriptor(). Note: Create unlinked descriptors is going to go away. Please use get/find descriptors from generated code or query the descriptor_pool.
_descriptor.FieldDescriptor(
/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pennsieve/cache/cache_segment_pb2.py:53
/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pennsieve/cache/cache_segment_pb2.py:53: DeprecationWarning: Call to deprecated create function FieldDescriptor(). Note: Create unlinked descriptors is going to go away. Please use get/find descriptors from generated code or query the descriptor_pool.
_descriptor.FieldDescriptor(
/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pennsieve/cache/cache_segment_pb2.py:70
/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pennsieve/cache/cache_segment_pb2.py:70: DeprecationWarning: Call to deprecated create function FieldDescriptor(). Note: Create unlinked descriptors is going to go away. Please use get/find descriptors from generated code or query the descriptor_pool.
_descriptor.FieldDescriptor(
/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pennsieve/cache/cache_segment_pb2.py:29
/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/pennsieve/cache/cache_segment_pb2.py:29: DeprecationWarning: Call to deprecated create function Descriptor(). Note: Create unlinked descriptors is going to go away. Please use get/find descriptors from generated code or query the descriptor_pool.
_CACHESEGMENT = _descriptor.Descriptor(
/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/nose/importer.py:12
/home/cmiss/Jenkins/shiningpanda/jobs/7c726052/virtualenvs/d41d8cd9/lib/python3.9/site-packages/nose/importer.py:12: DeprecationWarning: the imp module is deprecated in favour of importlib; see the module's documentation for alternative uses
from imp import find_module, load_module, acquire_lock, release_lock
tests/test_health.py::test_request_response
/home/cmiss/Jenkins/workspace/SPARC-API-DEV/tests/test_health.py:13: DeprecationWarning: Please use assertEqual instead.
assert_equals("healthy", json_response.get("status"))
-- Docs: https://docs.pytest.org/en/latest/warnings.html
=========================== short test summary info ============================
FAILED tests/test_api.py::test_hubspot_webhook - assert 400 == 200
FAILED tests/test_biolucida.py::BiolucidaTestCase::test_authenticate - reques...
FAILED tests/test_biolucida.py::BiolucidaTestCase::test_bad_token - werkzeug....
FAILED tests/test_biolucida.py::BiolucidaTestCase::test_get_image_info - werk...
FAILED tests/test_biolucida.py::BiolucidaTestCase::test_get_thumbnail - werkz...
FAILED tests/test_biolucida.py::BiolucidaTestCase::test_old_token - werkzeug....
FAILED tests/test_biolucida.py::test_image_xmp_info_2727 - TypeError: argumen...
FAILED tests/test_biolucida.py::test_image_xmp_info_1197 - TypeError: argumen...
FAILED tests/test_biolucida.py::test_image_xmp_info_850 - assert 400 == 200
FAILED tests/test_biolucida.py::test_image_blv_link_849 - assert 400 == 200
FAILED tests/test_biolucida.py::test_image_search_dataset_77 - AssertionError...
FAILED tests/test_biolucida.py::test_image_search_dataset_292 - KeyError: 'st...
FAILED tests/test_thumbnails.py::test_neurolucida_thumbnail - assert False
FAILED tests/test_thumbnails.py::test_neurolucida_thumbnail_dataset_221 - ass...
====== 14 failed, 98 passed, 4 skipped, 10 warnings in 396.02s (0:06:36) =======
Build step 'Virtualenv Builder' marked build as failure
[Slack Notifications] found #1205 as previous completed, non-aborted build
[Slack Notifications] will send OnEveryFailureNotification because build matches and user preferences allow it
Finished: FAILURE