Started by timer Running as SYSTEM Building remotely on Ubuntu_18.04_bioeng49 (buildslave Testing) in workspace /home/cmiss/Jenkins/workspace/SCKAN Connectivity [WS-CLEANUP] Deleting project workspace... [WS-CLEANUP] Deferred wipeout is used... [WS-CLEANUP] Done The recommended git tool is: NONE No credentials specified Cloning the remote Git repository Cloning repository https://github.com/ABI-Software/scicrunch-knowledge-testing.git > git init /home/cmiss/Jenkins/workspace/SCKAN Connectivity # timeout=10 Fetching upstream changes from https://github.com/ABI-Software/scicrunch-knowledge-testing.git > git --version # timeout=10 > git --version # 'git version 2.25.1' > git fetch --tags --force --progress -- https://github.com/ABI-Software/scicrunch-knowledge-testing.git +refs/heads/*:refs/remotes/origin/* # timeout=10 > git config remote.origin.url https://github.com/ABI-Software/scicrunch-knowledge-testing.git # timeout=10 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10 Avoid second fetch > git rev-parse refs/remotes/origin/main^{commit} # timeout=10 Checking out Revision c026ef9a42f3c7035315e3f05d82586e20b35559 (refs/remotes/origin/main) > git config core.sparsecheckout # timeout=10 > git checkout -f c026ef9a42f3c7035315e3f05d82586e20b35559 # timeout=10 Commit message: "Improve testing to link to tagged documentation." > git rev-list --no-walk c026ef9a42f3c7035315e3f05d82586e20b35559 # timeout=10 [SCKAN Connectivity] $ /bin/sh -xe /tmp/shiningpanda8726905102677435772.sh + export SCICRUNCH_API_HOST=https://scicrunch.org/api/1/elastic/SPARC_PortalDatasets_pr + pip install -r requirements.txt Collecting mapknowledge@ https://github.com/AnatomicMaps/map-knowledge/releases/download/v0.9.9/mapknowledge-0.9.9-py3-none-any.whl Downloading https://github.com/AnatomicMaps/map-knowledge/releases/download/v0.9.9/mapknowledge-0.9.9-py3-none-any.whl (15 kB) Requirement already satisfied: requests==2.27.1 in /home/cmiss/Jenkins/shiningpanda/jobs/5a3744f0/virtualenvs/d41d8cd9/lib/python3.8/site-packages (from -r requirements.txt (line 1)) (2.27.1) Requirement already satisfied: algoliasearch==2.6.2 in /home/cmiss/Jenkins/shiningpanda/jobs/5a3744f0/virtualenvs/d41d8cd9/lib/python3.8/site-packages (from -r requirements.txt (line 2)) (2.6.2) Requirement already satisfied: boto3==1.17.67 in /home/cmiss/Jenkins/shiningpanda/jobs/5a3744f0/virtualenvs/d41d8cd9/lib/python3.8/site-packages (from -r requirements.txt (line 3)) (1.17.67) Requirement already satisfied: charset-normalizer~=2.0.0 in /home/cmiss/Jenkins/shiningpanda/jobs/5a3744f0/virtualenvs/d41d8cd9/lib/python3.8/site-packages (from requests==2.27.1->-r requirements.txt (line 1)) (2.0.12) Requirement already satisfied: urllib3<1.27,>=1.21.1 in /home/cmiss/Jenkins/shiningpanda/jobs/5a3744f0/virtualenvs/d41d8cd9/lib/python3.8/site-packages (from requests==2.27.1->-r requirements.txt (line 1)) (1.26.12) Requirement already satisfied: idna<4,>=2.5 in /home/cmiss/Jenkins/shiningpanda/jobs/5a3744f0/virtualenvs/d41d8cd9/lib/python3.8/site-packages (from requests==2.27.1->-r requirements.txt (line 1)) (3.4) Requirement already satisfied: certifi>=2017.4.17 in /home/cmiss/Jenkins/shiningpanda/jobs/5a3744f0/virtualenvs/d41d8cd9/lib/python3.8/site-packages (from requests==2.27.1->-r requirements.txt (line 1)) (2022.9.24) Requirement already satisfied: jmespath<1.0.0,>=0.7.1 in /home/cmiss/Jenkins/shiningpanda/jobs/5a3744f0/virtualenvs/d41d8cd9/lib/python3.8/site-packages (from boto3==1.17.67->-r requirements.txt (line 3)) (0.10.0) Requirement already satisfied: botocore<1.21.0,>=1.20.67 in /home/cmiss/Jenkins/shiningpanda/jobs/5a3744f0/virtualenvs/d41d8cd9/lib/python3.8/site-packages (from boto3==1.17.67->-r requirements.txt (line 3)) (1.20.112) Requirement already satisfied: s3transfer<0.5.0,>=0.4.0 in /home/cmiss/Jenkins/shiningpanda/jobs/5a3744f0/virtualenvs/d41d8cd9/lib/python3.8/site-packages (from boto3==1.17.67->-r requirements.txt (line 3)) (0.4.2) Requirement already satisfied: rdflib in /home/cmiss/Jenkins/shiningpanda/jobs/5a3744f0/virtualenvs/d41d8cd9/lib/python3.8/site-packages (from mapknowledge@ https://github.com/AnatomicMaps/map-knowledge/releases/download/v0.9.9/mapknowledge-0.9.9-py3-none-any.whl->-r requirements.txt (line 4)) (6.2.0) Requirement already satisfied: networkx in /home/cmiss/Jenkins/shiningpanda/jobs/5a3744f0/virtualenvs/d41d8cd9/lib/python3.8/site-packages (from mapknowledge@ https://github.com/AnatomicMaps/map-knowledge/releases/download/v0.9.9/mapknowledge-0.9.9-py3-none-any.whl->-r requirements.txt (line 4)) (2.8.8) Requirement already satisfied: python-dateutil<3.0.0,>=2.1 in /home/cmiss/Jenkins/shiningpanda/jobs/5a3744f0/virtualenvs/d41d8cd9/lib/python3.8/site-packages (from botocore<1.21.0,>=1.20.67->boto3==1.17.67->-r requirements.txt (line 3)) (2.8.2) Requirement already satisfied: pyparsing in /home/cmiss/Jenkins/shiningpanda/jobs/5a3744f0/virtualenvs/d41d8cd9/lib/python3.8/site-packages (from rdflib->mapknowledge@ https://github.com/AnatomicMaps/map-knowledge/releases/download/v0.9.9/mapknowledge-0.9.9-py3-none-any.whl->-r requirements.txt (line 4)) (3.0.9) Requirement already satisfied: isodate in /home/cmiss/Jenkins/shiningpanda/jobs/5a3744f0/virtualenvs/d41d8cd9/lib/python3.8/site-packages (from rdflib->mapknowledge@ https://github.com/AnatomicMaps/map-knowledge/releases/download/v0.9.9/mapknowledge-0.9.9-py3-none-any.whl->-r requirements.txt (line 4)) (0.6.1) Requirement already satisfied: setuptools in /home/cmiss/Jenkins/shiningpanda/jobs/5a3744f0/virtualenvs/d41d8cd9/lib/python3.8/site-packages (from rdflib->mapknowledge@ https://github.com/AnatomicMaps/map-knowledge/releases/download/v0.9.9/mapknowledge-0.9.9-py3-none-any.whl->-r requirements.txt (line 4)) (65.6.0) Requirement already satisfied: six>=1.5 in /home/cmiss/Jenkins/shiningpanda/jobs/5a3744f0/virtualenvs/d41d8cd9/lib/python3.8/site-packages (from python-dateutil<3.0.0,>=2.1->botocore<1.21.0,>=1.20.67->boto3==1.17.67->-r requirements.txt (line 3)) (1.16.0) [notice] A new release of pip available: 22.3.1 -> 23.0.1 [notice] To update, run: pip install --upgrade pip + python -m unittest tests/nightly_tests/test_connectivity.py F. ====================================================================== FAIL: test_connectivity_neuron_group (tests.nightly_tests.test_connectivity.ConnectivityTestCase) ---------------------------------------------------------------------- Traceback (most recent call last): File "/home/cmiss/Jenkins/workspace/SCKAN Connectivity/tests/nightly_tests/test_connectivity.py", line 120, in test_connectivity_neuron_group assert len(knowledge.get('connectivity', [])) == len(KEAST_NEURON_PATH_5['connectivity']), 'Incorrect number of nodes for Keast neuron path 5' AssertionError: Incorrect number of nodes for Keast neuron path 5 ---------------------------------------------------------------------- Ran 2 tests in 4.984s FAILED (failures=1) Build step 'Virtualenv Builder' marked build as failure [Slack Notifications] found #98 as previous completed, non-aborted build [Slack Notifications] will send OnEveryFailureNotification because build matches and user preferences allow it Finished: FAILURE