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Summary

  1. Made a submission button. (commit: a193cc8) (details)
  2. tidy up whitespace (commit: 4fa5b43) (details)
  3. removing backup files. (commit: 46c5671) (details)
  4. update .gitignore. (commit: dfda800) (details)
  5. Changes to the color coding and position of the buttons. (commit: bdf7d77) (details)
  6. Work on Author Instructions (commit: 41ba9c2) (details)
  7. Author instructions (commit: 7ac0c5b) (details)
  8. Added logo and changed About the Journal (commit: ea29d1a) (details)
  9. Articles in menu (commit: 7abcf35) (details)
  10. Adding articles (commit: f53d204) (details)
  11. Image button and abstract (commit: c021d0c) (details)
  12. Button images (commit: a60f1d7) (details)
  13. Buttons and Abstract (commit: 4296b49) (details)
  14. tweaks to get the site working on my machine. (commit: 140cf88) (details)
  15. Logo and weird blue (commit: 5c3f401) (details)
  16. Added new author (commit: dc24a10) (details)
  17. Changed color scheme (commit: c8d63e4) (details)
  18. Added images for buttons (commit: 6e7c7c0) (details)
  19. Author instructions (commit: 95123c0) (details)
  20. spelling :) (commit: 8ccd602) (details)
  21. Tweaking introduction paragraph. (commit: ffe7c76) (details)
  22. Update the about page to match current state of things. (commit: 4a5869b) (details)
  23. Preparation for COMBINE (commit: 1b00807) (details)
  24. Preparation for COMBINE (commit: fbc84de) (details)
  25. Adding instructions on running the development server on windows as I (commit: 06bc80a) (details)
  26. playing with a new way to do the footer. (commit: e7eaddd) (details)
  27. adding missing newline at end of file (commit: a0a7789) (details)
  28. Using the SPARC MAPcore youtube channel to host the unlisted Physiome (commit: 92586d6) (details)
  29. More changes for COMBINE (commit: 1a22224) (details)
  30. Adding new logo image (commit: 392ce95) (details)
  31. updating article listing (commit: f8fec27) (details)
The file was modifiedpelicanconf.py (diff)
The file was addedthemes/pj/templates/baseSafetyCopy.html
The file was modifiedthemes/pj/templates/base.html (diff)
The file was modifiedthemes/pj/templates/index.html (diff)
The file was addedthemes/pj/templates/indexSafetyCopy.html
The file was modifiedpelicanconf.py (diff)
Commit 46c567114492e4bae86bf2b5958079ccbd46b80f by David Nickerson
removing backup files.
and testing jenkins pull request trigger
(commit: 46c5671)
The file was removedthemes/pj/templates/baseSafetyCopy.html
The file was removedthemes/pj/templates/indexSafetyCopy.html
Commit dfda80043c2d91d7c27f34405c4bebc5101a7eca by David Nickerson
update .gitignore.
and more testing of jenkins testing
(commit: dfda800)
The file was modified.gitignore (diff)
Commit bdf7d7746715f1aeb95b15d0bf5d3c78e3012fec by karlu264
Changes to the color coding and position of the buttons.
Centered the Submit button and the video on the first page and removed
the logos. Video still not playing and article buttons still the wrong
color.
(commit: bdf7d77)
The file was addedcontent/pages/pdf.png
The file was addedVID_20190313_115526.mp4
The file was addedcontent/pages/pmr.md
Commit 41ba9c252d31e4e13dc4f0112d8638e937f39d84 by karlu264
Work on Author Instructions
Copied Andres text into Author instructions and tried to add the image.
(commit: 41ba9c2)
The file was addedcontent/CurationAndSubmissionFlow.png
The file was addedthemes/pj/static/images/CurationAndSubmissionFlow.png
The file was modifiedcontent/pages/instructions-to-authors.md (diff)
The file was modifiedthemes/pj/templates/index.html (diff)
The file was modifiedthemes/pj/templates/shared/common.html (diff)
The file was addedPurplePhysiome-squarePage.svg
The file was modifiedthemes/pj/templates/base.html (diff)
Commit 7ac0c5b1c6ba67a8e713b819a06d9e9b8141e2a3 by karlu264
Author instructions
Updated Instructions for Author, but it still needs some more info
and... english.
(commit: 7ac0c5b)
The file was modifiedcontent/pages/instructions-to-authors.md (diff)
Commit ea29d1aea788571b68ff251a95e899e8dccd6d44 by karlu264
Added logo and changed About the Journal
Moved Editorial Board link from banner menu to About Journal page to
make room for PMR and Instructions for Authors.  Added logo to banner.
Tried to put it before the text, but changed my mind, because after
looks better maybe?
(commit: ea29d1a)
The file was modifiedcontent/pages/about.md (diff)
The file was removedPurplePhysiome-squarePage.svg
The file was modifiedthemes/pj/templates/base.html (diff)
Commit 7abcf359ea19cc97f3348f9ab24e4945d05e0b52 by karlu264
Articles in menu
Articles link in the banner menu
(commit: 7abcf35)
The file was modifiedthemes/pj/templates/base.html (diff)
Commit f53d204032f38123f86dd928cefaafd5487dd8fc by karlu264
Adding articles
Adding placeholders for planned articles. Author looks weird if there is
only one.
(commit: f53d204)
The file was addedcontent/Articles/noble-62.md
The file was addedcontent/Articles/force-dependent-affinity.md
The file was addedcontent/Articles/model-of-skeletal-muscle.md
The file was addedcontent/Articles/pH-regulation.md
The file was addedcontent/Articles/thermodynamically-consistens-model.md
The file was modifiedthemes/pj/templates/article.html (diff)
The file was addedcontent/Articles/cerebral-circulation.md
Commit c021d0c78d09188c9958e35e302034521075641a by karlu264
Image button and abstract
I have tried to make images as buttons instead of links, and to display
the Abstract text, but none of it works.
(commit: c021d0c)
The file was modifiedcontent/Articles/cerebral-circulation.md (diff)
The file was modifiedthemes/pj/templates/article.html (diff)
The file was modifiedcontent/Articles/model-of-ph-regulation.md (diff)
Commit a60f1d70a923abd0950329cea764d6d02f326821 by karlu264
Button images
Button images added. To do: make the button background grey and the
image the right size.
(commit: a60f1d7)
The file was addedPMR_button.svg
The file was modifiedthemes/pj/templates/article.html (diff)
Commit 4296b49283153bf13cc5d48f5a9f4e0c0f08d640 by karlu264
Buttons and Abstract
Buttons now have pictures on them in the article description and the
abstract is shown.
(commit: 4296b49)
The file was modifiedthemes/pj/templates/article.html (diff)
Commit 140cf885bb5f2e5af68046e9b2b6132c347732ca by David Nickerson
tweaks to get the site working on my machine.
Need to get the actual logo and then should be able to fill it in.
(commit: 140cf88)
The file was addedthemes/pj/static/images/VID_20190313_115526.mp4
The file was modifiedthemes/pj/templates/base.html (diff)
The file was removedVID_20190313_115526.mp4
The file was modifiedthemes/pj/templates/index.html (diff)
Commit 5c3f401e965ce78037adff06501dc293b55daed8 by karlu264
Logo and weird blue
This is not the blue we want. But the logo is correct.
(commit: 5c3f401)
The file was addedthemes/pj/static/images/Physiome-squarePage-Purple.svg
The file was modifiedthemes/pj/templates/base.html (diff)
Commit dc24a109753382a2c9e5ac8f444c9a798808d804 by karlu264
Added new author
Added extra author to the articles with only one author in order to make
the author list look less weird. This needs to be fixed later though.
(commit: dc24a10)
The file was modifiedcontent/Articles/noble-62.md (diff)
The file was modifiedcontent/Articles/model-of-skeletal-muscle.md (diff)
Commit c8d63e4972a92ee02b8854c4fd2fb6d0bdae8ffa by karlu264
Changed color scheme
Way cooler now. And the right logos.  Also made minor changes to the
text on the different pages.
(commit: c8d63e4)
The file was modifiedthemes/pj/templates/article.html (diff)
The file was modifiedthemes/pj/templates/index.html (diff)
The file was modifiedcontent/pages/instructions-to-authors.md (diff)
The file was modifiedthemes/pj/templates/base.html (diff)
The file was modifiedthemes/pj/templates/shared/common.html (diff)
Commit 6e7c7c071fbc600805969f25ef75cd2710ec65bc by karlu264
Added images for buttons
Added images for buttons
(commit: 6e7c7c0)
The file was modifiedthemes/pj/templates/shared/pub.html (diff)
The file was addedthemes/pj/static/images/Run_button.svg
The file was addedthemes/pj/static/images/Fulltext_button.svg
The file was addedthemes/pj/static/images/PMR_button.svg
Commit 95123c075ab028e40be1654e389427f2d0e9059e by karlu264
Author instructions
Updated Author Instructions and took away PMR in the menu.
(commit: 95123c0)
The file was modifiedcontent/Articles/model-of-skeletal-muscle.md (diff)
The file was modifiedcontent/Articles/noble-62.md (diff)
The file was modifiedthemes/pj/templates/shared/pub.html (diff)
The file was modifiedthemes/pj/templates/article.html (diff)
The file was modifiedthemes/pj/templates/base.html (diff)
The file was modifiedcontent/pages/instructions-to-authors.md (diff)
The file was modifiedcontent/pages/instructions-to-authors.md (diff)
Commit ffe7c762da1025dae3ac4468ee19d95f59b758a1 by David Nickerson
Tweaking introduction paragraph.
(commit: ffe7c76)
The file was modifiedthemes/pj/templates/index.html (diff)
Commit 4a5869b42534170415536d9062228363dc1b1fc5 by David Nickerson
Update the about page to match current state of things.
(commit: 4a5869b)
The file was modifiedcontent/pages/about.md (diff)
Commit 1b00807c43d0b51afaa53cd531ea53a66a588fd9 by karlu264
Preparation for COMBINE
Added footer with contact information and changed the logo, button
colors and background.
(commit: 1b00807)
The file was modifiedthemes/pj/templates/index.html (diff)
The file was modifiedthemes/pj/templates/base.html (diff)
The file was modifiedcontent/pages/editorial-board.md (diff)
Commit fbc84deea65cc66b630750cd84322268d8963ca1 by karlu264
Preparation for COMBINE
Added footer with contact information and changed the logo, button
colors and background.
(commit: fbc84de)
The file was modifiedthemes/pj/templates/base.html (diff)
The file was modifiedthemes/pj/templates/index.html (diff)
The file was modifiedcontent/pages/editorial-board.md (diff)
Commit 06bc80a2acf6c84a7dfb3adb72fde0d8959c7d28 by David Nickerson
Adding instructions on running the development server on windows as I
keep forgetting how.
(commit: 06bc80a)
The file was modifiedREADME.md (diff)
Commit e7eadddebca4c6ca8cdb953bf31bdf04f67ce895 by David Nickerson
playing with a new way to do the footer.
Not quite right on the index page, but generally works well enough.
(commit: e7eaddd)
The file was modifiedthemes/pj/templates/base.html (diff)
The file was modifiedthemes/pj/templates/index.html (diff)
Commit a0a7789a0bbdd18ed583d4f43f1d7eac189cbfc3 by David Nickerson
adding missing newline at end of file
(commit: a0a7789)
The file was modifiedthemes/pj/templates/index.html (diff)
Commit 92586d6c6f77265c59f27e1a25ba4eb515334f1d by David Nickerson
Using the SPARC MAPcore youtube channel to host the unlisted Physiome
movie.
This allows us more control and less overlay than what we get from the
ABI channel.
(commit: 92586d6)
The file was modifiedthemes/pj/templates/index.html (diff)
Commit 1a222244851a17937bdfdc81968c1d6fb5fb9bfa by karlu264
More changes for COMBINE
Changed Hooks affiliations, removed Articles from the menu
(commit: 1a22224)
The file was modifiedcontent/pages/editorial-board.md (diff)
The file was modifiedthemes/pj/templates/base.html (diff)
The file was addedthemes/pj/static/images/Physiome-beside.png
The file was modifiedcontent/Articles/model-of-ph-regulation.md (diff)
The file was removedcontent/Articles/cerebral-circulation.md
The file was removedcontent/Articles/pH-regulation.md
The file was addedcontent/Articles/model-of-skeletal-muscle-with-cramp.md
The file was modifiedcontent/Articles/force-dependent-affinity.md (diff)
The file was modifiedcontent/Articles/model-of-skeletal-muscle.md (diff)
The file was modifiedcontent/Articles/cerebral-circulation-model.md (diff)