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Started by user Hugh Sorby Started by user Hugh Sorby Started by user Hugh Sorby Started by user Hugh Sorby Started by user Hugh Sorby Building remotely on Ubuntu_16.04_bioeng49 (buildslave Testing) in workspace /home/cmiss/Jenkins/workspace/PhysiomeJournal_website No credentials specified > git rev-parse --is-inside-work-tree # timeout=10 Fetching changes from the remote Git repository > git config remote.origin.url https://github.com/Physiome/journal-website # timeout=10 Fetching upstream changes from https://github.com/Physiome/journal-website > git --version # timeout=10 > git fetch --tags --progress https://github.com/Physiome/journal-website +refs/heads/*:refs/remotes/origin/* > git rev-parse refs/remotes/origin/master^{commit} # timeout=10 > git rev-parse refs/remotes/origin/origin/master^{commit} # timeout=10 Checking out Revision 3adbd36839acb0b60f04e002ca5e0ab7b886cbc5 (refs/remotes/origin/master) > git config core.sparsecheckout # timeout=10 > git checkout -f 3adbd36839acb0b60f04e002ca5e0ab7b886cbc5 Commit message: "One more Jenkins test" > git rev-list --no-walk 3adbd36839acb0b60f04e002ca5e0ab7b886cbc5 # timeout=10 [PhysiomeJournal_website] $ /bin/sh -xe /tmp/shiningpanda1194169201235497938.sh + make deps pip install -r py-requirements.txt DEPRECATION: Python 2.7 will reach the end of its life on January 1st, 2020. Please upgrade your Python as Python 2.7 won't be maintained after that date. A future version of pip will drop support for Python 2.7. Requirement already satisfied: pelican>3.6 in /home/cmiss/Jenkins/shiningpanda/jobs/b6ec0b39/virtualenvs/d41d8cd9/lib/python2.7/site-packages (from -r py-requirements.txt (line 1)) (4.0.1) Requirement already satisfied: markdown in /home/cmiss/Jenkins/shiningpanda/jobs/b6ec0b39/virtualenvs/d41d8cd9/lib/python2.7/site-packages (from -r py-requirements.txt (line 2)) (3.0.1) Requirement already satisfied: pytz>=0a in /home/cmiss/Jenkins/shiningpanda/jobs/b6ec0b39/virtualenvs/d41d8cd9/lib/python2.7/site-packages (from pelican>3.6->-r py-requirements.txt (line 1)) (2018.9) Requirement already satisfied: unidecode in /home/cmiss/Jenkins/shiningpanda/jobs/b6ec0b39/virtualenvs/d41d8cd9/lib/python2.7/site-packages (from pelican>3.6->-r py-requirements.txt (line 1)) (1.0.23) Requirement already satisfied: jinja2>=2.7 in /home/cmiss/Jenkins/shiningpanda/jobs/b6ec0b39/virtualenvs/d41d8cd9/lib/python2.7/site-packages (from pelican>3.6->-r py-requirements.txt (line 1)) (2.10) Requirement already satisfied: six>=1.4 in /home/cmiss/Jenkins/shiningpanda/jobs/b6ec0b39/virtualenvs/d41d8cd9/lib/python2.7/site-packages (from pelican>3.6->-r py-requirements.txt (line 1)) (1.12.0) Requirement already satisfied: pygments in /home/cmiss/Jenkins/shiningpanda/jobs/b6ec0b39/virtualenvs/d41d8cd9/lib/python2.7/site-packages (from pelican>3.6->-r py-requirements.txt (line 1)) (2.3.1) Requirement already satisfied: blinker in /home/cmiss/Jenkins/shiningpanda/jobs/b6ec0b39/virtualenvs/d41d8cd9/lib/python2.7/site-packages (from pelican>3.6->-r py-requirements.txt (line 1)) (1.4) Requirement already satisfied: docutils in /home/cmiss/Jenkins/shiningpanda/jobs/b6ec0b39/virtualenvs/d41d8cd9/lib/python2.7/site-packages (from pelican>3.6->-r py-requirements.txt (line 1)) (0.14) Requirement already satisfied: feedgenerator>=1.9 in /home/cmiss/Jenkins/shiningpanda/jobs/b6ec0b39/virtualenvs/d41d8cd9/lib/python2.7/site-packages (from pelican>3.6->-r py-requirements.txt (line 1)) (1.9) Requirement already satisfied: python-dateutil in /home/cmiss/Jenkins/shiningpanda/jobs/b6ec0b39/virtualenvs/d41d8cd9/lib/python2.7/site-packages (from pelican>3.6->-r py-requirements.txt (line 1)) (2.8.0) Requirement already satisfied: MarkupSafe>=0.23 in /home/cmiss/Jenkins/shiningpanda/jobs/b6ec0b39/virtualenvs/d41d8cd9/lib/python2.7/site-packages (from jinja2>=2.7->pelican>3.6->-r py-requirements.txt (line 1)) (1.1.1) + make html pelican /home/cmiss/Jenkins/workspace/PhysiomeJournal_website/content -o /home/cmiss/Jenkins/workspace/PhysiomeJournal_website/output -s /home/cmiss/Jenkins/workspace/PhysiomeJournal_website/pelicanconf.py Done: Processed 3 articles, 0 drafts, 5 pages, 0 hidden pages and 0 draft pages in 0.48 seconds. + scp -v -2 -r -o GlobalKnownHostsFile=**** -i **** output/about.html output/archive-descriptions output/archives.html output/articles output/articles.html output/author output/authors.html output/categories.html output/data output/editorial-board.html output/index.html output/index2.html output/instructions-to-authors.html output/models output/pdfs output/physiome-project.html output/tags.html output/theme pj-site@abiwebsrv02.bioeng.auckland.ac.nz:/home/pj-site/journal.physiomeproject.org/ Executing: program /usr/bin/ssh host abiwebsrv02.bioeng.auckland.ac.nz, user pj-site, command scp -v -r -d -t /home/pj-site/journal.physiomeproject.org/ OpenSSH_7.2p2 Ubuntu-4ubuntu2.8, OpenSSL 1.0.2g 1 Mar 2016 debug1: Reading configuration data /etc/ssh/ssh_config debug1: /etc/ssh/ssh_config line 19: Applying options for * debug1: Connecting to abiwebsrv02.bioeng.auckland.ac.nz [130.216.4.34] port 22. debug1: Connection established. debug1: key_load_public: No such file or directory debug1: identity file **** type -1 debug1: key_load_public: No such file or directory debug1: identity file ****-cert type -1 debug1: Enabling compatibility mode for protocol 2.0 debug1: Local version string SSH-2.0-OpenSSH_7.2p2 Ubuntu-4ubuntu2.8 debug1: Remote protocol version 2.0, remote software version OpenSSH_7.2p2 Ubuntu-4ubuntu2.8 debug1: match: OpenSSH_7.2p2 Ubuntu-4ubuntu2.8 pat OpenSSH* compat 0x04000000 debug1: Authenticating to abiwebsrv02.bioeng.auckland.ac.nz:22 as 'pj-site' debug1: SSH2_MSG_KEXINIT sent debug1: SSH2_MSG_KEXINIT received debug1: kex: algorithm: curve25519-sha256@libssh.org debug1: kex: host key algorithm: ecdsa-sha2-nistp256 debug1: kex: server->client cipher: chacha20-poly1305@openssh.com MAC: <implicit> compression: none debug1: kex: client->server cipher: chacha20-poly1305@openssh.com MAC: <implicit> compression: none debug1: expecting SSH2_MSG_KEX_ECDH_REPLY debug1: Server host key: ecdsa-sha2-nistp256 SHA256:nrl+uVNnKBIgl3yLEOD5DNhwRjwUUYwcQfwVtvox6as debug1: Host 'abiwebsrv02.bioeng.auckland.ac.nz' is known and matches the ECDSA host key. debug1: Found key in /home/cmiss/.ssh/known_hosts:9 debug1: rekey after 134217728 blocks debug1: SSH2_MSG_NEWKEYS sent debug1: expecting SSH2_MSG_NEWKEYS debug1: SSH2_MSG_NEWKEYS received debug1: rekey after 134217728 blocks debug1: SSH2_MSG_EXT_INFO received debug1: kex_input_ext_info: server-sig-algs=<rsa-sha2-256,rsa-sha2-512> debug1: SSH2_MSG_SERVICE_ACCEPT received debug1: Authentications that can continue: publickey,password debug1: Next authentication method: publickey debug1: Trying private key: **** debug1: Authentication succeeded (publickey). Authenticated to abiwebsrv02.bioeng.auckland.ac.nz ([130.216.4.34]:22). debug1: channel 0: new [client-session] debug1: Requesting no-more-sessions@openssh.com debug1: Entering interactive session. debug1: pledge: network debug1: client_input_global_request: rtype hostkeys-00@openssh.com want_reply 0 debug1: Sending environment. debug1: Sending env LANG = en_NZ.UTF-8 debug1: Sending command: scp -v -r -d -t /home/pj-site/journal.physiomeproject.org/ Sending file modes: C0664 6221 about.html Sink: C0664 6221 about.html Entering directory: D0775 0 archive-descriptions Sink: D0775 0 archive-descriptions Sending file modes: C0664 3076 test2.json Sink: C0664 3076 test2.json Sink: E Sending file modes: C0664 2720 archives.html Sink: C0664 2720 archives.html Entering directory: D0775 0 articles Sending file modes: C0664 3787 a-model-of-ph-control.html Sink: D0775 0 articles Sink: C0664 3787 a-model-of-ph-control.html Sending file modes: C0664 3602 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