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Started by GitHub push by KarinLundengard Running as SYSTEM Building remotely on Ubuntu_16.04_bioeng49 (buildslave Testing) in workspace /home/cmiss/Jenkins/workspace/PhysiomeJournalDevelopmentSite No credentials specified Wiping out workspace first. Cloning the remote Git repository Cloning repository https://github.com/Physiome/journal-website > git init /home/cmiss/Jenkins/workspace/PhysiomeJournalDevelopmentSite # timeout=10 Fetching upstream changes from https://github.com/Physiome/journal-website > git --version # timeout=10 > git fetch --tags --progress -- https://github.com/Physiome/journal-website +refs/heads/*:refs/remotes/origin/* # timeout=10 > git config remote.origin.url https://github.com/Physiome/journal-website # timeout=10 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10 > git config remote.origin.url https://github.com/Physiome/journal-website # timeout=10 Fetching upstream changes from https://github.com/Physiome/journal-website > git fetch --tags --progress -- https://github.com/Physiome/journal-website +refs/heads/*:refs/remotes/origin/* # timeout=10 > git rev-parse refs/remotes/origin/journaldev^{commit} # timeout=10 > git rev-parse refs/remotes/origin/origin/journaldev^{commit} # timeout=10 Checking out Revision 06baff7ba8f4748318281bc200cddadaebd4f0b1 (refs/remotes/origin/journaldev) > git config core.sparsecheckout # timeout=10 > git checkout -f 06baff7ba8f4748318281bc200cddadaebd4f0b1 # timeout=10 Commit message: "Merge pull request #68 from KarinLundengard/TemporaryStagingForIUPS" > git rev-list --no-walk aa1f541913e2b6c38e952b42e205f4efd021ac44 # timeout=10 [Set GitHub commit status (universal)] PENDING on repos [GHRepository@358cc034[nodeId=MDEwOlJlcG9zaXRvcnk5NDczNTE3Ng==,description=Source for journal.physiomeproject.org.,homepage=<null>,name=journal-website,fork=false,archived=false,size=16372,milestones={},language=HTML,commits={},source=<null>,parent=<null>,url=https://api.github.com/repos/Physiome/journal-website,id=94735176,nodeId=<null>,createdAt=2017-06-19T04:03:56Z,updatedAt=2020-08-21T09:43:46Z]] (sha:06baff7) with context:journaldev-build Setting commit status on GitHub for https://github.com/Physiome/journal-website/commit/06baff7ba8f4748318281bc200cddadaebd4f0b1 [PhysiomeJournalDevelopmentSite] $ /usr/bin/python2.7 /home/cmiss/Jenkins/shiningpanda/jobs/888df718/virtualenv.py /home/cmiss/Jenkins/shiningpanda/jobs/888df718/virtualenvs/d41d8cd9 New python executable in /home/cmiss/Jenkins/shiningpanda/jobs/888df718/virtualenvs/d41d8cd9/bin/python2.7 Also creating executable in /home/cmiss/Jenkins/shiningpanda/jobs/888df718/virtualenvs/d41d8cd9/bin/python Installing setuptools, pip, wheel...done. [PhysiomeJournalDevelopmentSite] $ /bin/sh -xe /tmp/shiningpanda17670297953783906052.sh + make deps pip install -r py-requirements.txt DEPRECATION: Python 2.7 reached the end of its life on January 1st, 2020. Please upgrade your Python as Python 2.7 is no longer maintained. pip 21.0 will drop support for Python 2.7 in January 2021. More details about Python 2 support in pip can be found at https://pip.pypa.io/en/latest/development/release-process/#python-2-support Collecting pelican>3.6 Downloading pelican-4.5.0-py2.py3-none-any.whl (673 kB) Collecting markdown Using cached Markdown-3.1.1-py2.py3-none-any.whl (87 kB) Processing /home/cmiss/.cache/pip/wheels/68/1c/e0/44629d259095aa5f4af96d3c4638f46998e4c5b9b02c1cad3f/feedgenerator-1.9.1-py2-none-any.whl Processing /home/cmiss/.cache/pip/wheels/92/a0/00/8690a57883956a301d91cf4ec999cc0b258b01e3f548f86e89/blinker-1.4-cp27-none-any.whl Collecting unidecode Using cached Unidecode-1.1.1-py2.py3-none-any.whl (238 kB) Collecting pytz>=0a Using cached pytz-2020.1-py2.py3-none-any.whl (510 kB) Collecting python-dateutil Using cached python_dateutil-2.8.1-py2.py3-none-any.whl (227 kB) Collecting jinja2>=2.11 Using cached Jinja2-2.11.2-py2.py3-none-any.whl (125 kB) Collecting docutils>=0.15 Using cached docutils-0.16-py2.py3-none-any.whl (548 kB) Collecting pygments Using cached Pygments-2.5.2-py2.py3-none-any.whl (896 kB) Requirement already satisfied: setuptools>=36 in /home/cmiss/Jenkins/shiningpanda/jobs/888df718/virtualenvs/d41d8cd9/lib/python2.7/site-packages (from markdown->-r py-requirements.txt (line 2)) (44.1.1) Collecting six Using cached six-1.15.0-py2.py3-none-any.whl (10 kB) Collecting MarkupSafe>=0.23 Using cached MarkupSafe-1.1.1-cp27-cp27mu-manylinux1_x86_64.whl (24 kB) Installing collected packages: pytz, six, feedgenerator, blinker, unidecode, python-dateutil, MarkupSafe, jinja2, docutils, pygments, pelican, markdown ERROR: Exception: Traceback (most recent call last): File "/home/cmiss/Jenkins/shiningpanda/jobs/888df718/virtualenvs/d41d8cd9/local/lib/python2.7/site-packages/pip/_internal/cli/base_command.py", line 216, in _main status = self.run(options, args) File "/home/cmiss/Jenkins/shiningpanda/jobs/888df718/virtualenvs/d41d8cd9/local/lib/python2.7/site-packages/pip/_internal/cli/req_command.py", line 182, in wrapper return func(self, options, args) File "/home/cmiss/Jenkins/shiningpanda/jobs/888df718/virtualenvs/d41d8cd9/local/lib/python2.7/site-packages/pip/_internal/commands/install.py", line 421, in run pycompile=options.compile, File "/home/cmiss/Jenkins/shiningpanda/jobs/888df718/virtualenvs/d41d8cd9/local/lib/python2.7/site-packages/pip/_internal/req/__init__.py", line 90, in install_given_reqs pycompile=pycompile, File "/home/cmiss/Jenkins/shiningpanda/jobs/888df718/virtualenvs/d41d8cd9/local/lib/python2.7/site-packages/pip/_internal/req/req_install.py", line 821, in install requested=self.user_supplied, File "/home/cmiss/Jenkins/shiningpanda/jobs/888df718/virtualenvs/d41d8cd9/local/lib/python2.7/site-packages/pip/_internal/operations/install/wheel.py", line 860, in install_wheel requested=requested, File "/home/cmiss/Jenkins/shiningpanda/jobs/888df718/virtualenvs/d41d8cd9/local/lib/python2.7/site-packages/pip/_internal/operations/install/wheel.py", line 689, in _install_wheel file.save() File "/home/cmiss/Jenkins/shiningpanda/jobs/888df718/virtualenvs/d41d8cd9/local/lib/python2.7/site-packages/pip/_internal/operations/install/wheel.py", line 452, in save zipinfo = self._getinfo() File "/home/cmiss/Jenkins/shiningpanda/jobs/888df718/virtualenvs/d41d8cd9/local/lib/python2.7/site-packages/pip/_internal/operations/install/wheel.py", line 431, in _getinfo return self._zip_file.getinfo(self.src_record_path.encode("utf-8")) File "/usr/lib/python2.7/zipfile.py", line 932, in getinfo 'There is no item named %r in the archive' % name) KeyError: "There is no item named 'pelican/tests/output/custom_locale/posts/2010/de\\xcc\\x81cembre/02/this-is-a-super-article/index.html' in the archive" Makefile:61: recipe for target 'deps' failed make: *** [deps] Error 2 Build step 'Virtualenv Builder' marked build as failure [Set GitHub commit status (universal)] ERROR on repos [GHRepository@27169f59[nodeId=MDEwOlJlcG9zaXRvcnk5NDczNTE3Ng==,description=Source for journal.physiomeproject.org.,homepage=<null>,name=journal-website,fork=false,archived=false,size=16372,milestones={},language=HTML,commits={},source=<null>,parent=<null>,url=https://api.github.com/repos/Physiome/journal-website,id=94735176,nodeId=<null>,createdAt=2017-06-19T04:03:56Z,updatedAt=2020-08-21T09:43:46Z]] (sha:06baff7) with context:journaldev-build Setting commit status on GitHub for https://github.com/Physiome/journal-website/commit/06baff7ba8f4748318281bc200cddadaebd4f0b1 Finished: FAILURE