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Started by GitHub push by KarinLundengard Running as SYSTEM Building remotely on Ubuntu_16.04_bioeng49 (buildslave Testing) in workspace /home/cmiss/Jenkins/workspace/PhysiomeJournalDevelopmentSite No credentials specified Wiping out workspace first. Cloning the remote Git repository Cloning repository https://github.com/Physiome/journal-website > git init /home/cmiss/Jenkins/workspace/PhysiomeJournalDevelopmentSite # timeout=10 Fetching upstream changes from https://github.com/Physiome/journal-website > git --version # timeout=10 > git fetch --tags --progress -- https://github.com/Physiome/journal-website +refs/heads/*:refs/remotes/origin/* # timeout=10 > git config remote.origin.url https://github.com/Physiome/journal-website # timeout=10 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10 > git config remote.origin.url https://github.com/Physiome/journal-website # timeout=10 Fetching upstream changes from https://github.com/Physiome/journal-website > git fetch --tags --progress -- https://github.com/Physiome/journal-website +refs/heads/*:refs/remotes/origin/* # timeout=10 > git rev-parse refs/remotes/origin/journaldev^{commit} # timeout=10 > git rev-parse refs/remotes/origin/origin/journaldev^{commit} # timeout=10 Checking out Revision 3ea9d0b7aadbb8cbebe6205e254870c26bd58902 (refs/remotes/origin/journaldev) > git config core.sparsecheckout # timeout=10 > git checkout -f 3ea9d0b7aadbb8cbebe6205e254870c26bd58902 # timeout=10 Commit message: "Merge pull request #54 from KarinLundengard/TemporaryStagingForIUPS" > git rev-list --no-walk 4b9ce0be07af0d3c5b3fd35273f658ed4b220979 # timeout=10 [Set GitHub commit status (universal)] PENDING on repos [GHRepository@5f6fa96c[description=Source for journal.physiomeproject.org.,homepage=<null>,name=journal-website,fork=false,archived=false,size=16230,milestones={},language=HTML,commits={},source=<null>,parent=<null>,responseHeaderFields={null=[HTTP/1.1 200 OK], Access-Control-Allow-Origin=[*], Access-Control-Expose-Headers=[ETag, Link, Location, Retry-After, X-GitHub-OTP, X-RateLimit-Limit, X-RateLimit-Remaining, X-RateLimit-Reset, X-OAuth-Scopes, X-Accepted-OAuth-Scopes, X-Poll-Interval, X-GitHub-Media-Type, Deprecation, Sunset], Cache-Control=[private, max-age=60, s-maxage=60], Content-Encoding=[gzip], Content-Security-Policy=[default-src 'none'], Content-Type=[application/json; charset=utf-8], Date=[Thu, 11 Jun 2020 04:19:25 GMT], ETag=[W/"ea7793d5edda1fe92b7a36fb2b1a3708"], Last-Modified=[Thu, 11 Jun 2020 04:19:06 GMT], OkHttp-Received-Millis=[1591849165841], OkHttp-Response-Source=[CONDITIONAL_CACHE 200], OkHttp-Selected-Protocol=[http/1.1], OkHttp-Sent-Millis=[1591849165519], Referrer-Policy=[origin-when-cross-origin, strict-origin-when-cross-origin], Server=[GitHub.com], Status=[200 OK], Strict-Transport-Security=[max-age=31536000; includeSubdomains; preload], Transfer-Encoding=[chunked], Vary=[Accept, Authorization, Cookie, X-GitHub-OTP, Accept-Encoding, Accept, X-Requested-With, Accept-Encoding], X-Accepted-OAuth-Scopes=[repo], X-Content-Type-Options=[nosniff], X-Frame-Options=[deny], X-GitHub-Media-Type=[github.v3; format=json], X-GitHub-Request-Id=[DDAC:3C4B:A3E44:BFACA:5EE1B0CD], X-OAuth-Scopes=[admin:repo_hook, repo, repo:status], X-RateLimit-Limit=[5000], X-RateLimit-Remaining=[4999], X-RateLimit-Reset=[1591852765], X-XSS-Protection=[1; mode=block]},url=https://api.github.com/repos/Physiome/journal-website,id=94735176]] (sha:3ea9d0b) with context:journaldev-build Setting commit status on GitHub for https://github.com/Physiome/journal-website/commit/3ea9d0b7aadbb8cbebe6205e254870c26bd58902 [PhysiomeJournalDevelopmentSite] $ /usr/bin/python2.7 /home/cmiss/Jenkins/shiningpanda/jobs/888df718/virtualenv.py /home/cmiss/Jenkins/shiningpanda/jobs/888df718/virtualenvs/d41d8cd9 New python executable in /home/cmiss/Jenkins/shiningpanda/jobs/888df718/virtualenvs/d41d8cd9/bin/python2.7 Also creating executable in /home/cmiss/Jenkins/shiningpanda/jobs/888df718/virtualenvs/d41d8cd9/bin/python Installing setuptools, pip, wheel...done. [PhysiomeJournalDevelopmentSite] $ /bin/sh -xe /tmp/shiningpanda12015504132343017445.sh + make deps pip install -r py-requirements.txt DEPRECATION: Python 2.7 reached the end of its life on January 1st, 2020. Please upgrade your Python as Python 2.7 is no longer maintained. pip 21.0 will drop support for Python 2.7 in January 2021. More details about Python 2 support in pip, can be found at https://pip.pypa.io/en/latest/development/release-process/#python-2-support Collecting pelican>3.6 Using cached pelican-4.2.0-py2.py3-none-any.whl (258 kB) Collecting markdown Using cached Markdown-3.1.1-py2.py3-none-any.whl (87 kB) Collecting six>=1.4 Using cached six-1.15.0-py2.py3-none-any.whl (10 kB) Processing /home/cmiss/.cache/pip/wheels/68/1c/e0/44629d259095aa5f4af96d3c4638f46998e4c5b9b02c1cad3f/feedgenerator-1.9.1-py2-none-any.whl Processing /home/cmiss/.cache/pip/wheels/92/a0/00/8690a57883956a301d91cf4ec999cc0b258b01e3f548f86e89/blinker-1.4-cp27-none-any.whl Collecting unidecode Using cached Unidecode-1.1.1-py2.py3-none-any.whl (238 kB) Collecting python-dateutil Using cached python_dateutil-2.8.1-py2.py3-none-any.whl (227 kB) Collecting pytz>=0a Using cached pytz-2020.1-py2.py3-none-any.whl (510 kB) Collecting docutils Using cached docutils-0.16-py2.py3-none-any.whl (548 kB) Collecting jinja2>=2.7 Using cached Jinja2-2.11.2-py2.py3-none-any.whl (125 kB) Collecting pygments Using cached Pygments-2.5.2-py2.py3-none-any.whl (896 kB) Requirement already satisfied: setuptools>=36 in /home/cmiss/Jenkins/shiningpanda/jobs/888df718/virtualenvs/d41d8cd9/lib/python2.7/site-packages (from markdown->-r py-requirements.txt (line 2)) (44.1.1) Collecting MarkupSafe>=0.23 Using cached MarkupSafe-1.1.1-cp27-cp27mu-manylinux1_x86_64.whl (24 kB) Installing collected packages: six, pytz, feedgenerator, blinker, unidecode, python-dateutil, docutils, MarkupSafe, jinja2, pygments, pelican, markdown Successfully installed MarkupSafe-1.1.1 blinker-1.4 docutils-0.16 feedgenerator-1.9.1 jinja2-2.11.2 markdown-3.1.1 pelican-4.2.0 pygments-2.5.2 python-dateutil-2.8.1 pytz-2020.1 six-1.15.0 unidecode-1.1.1 + make html pelican /home/cmiss/Jenkins/workspace/PhysiomeJournalDevelopmentSite/content -o /home/cmiss/Jenkins/workspace/PhysiomeJournalDevelopmentSite/output -s /home/cmiss/Jenkins/workspace/PhysiomeJournalDevelopmentSite/pelicanconf.py CRITICAL: UndefinedError: 'article' is undefined Makefile:64: recipe for target 'html' failed make: *** [html] Error 1 Build step 'Virtualenv Builder' marked build as failure [Set GitHub commit status (universal)] ERROR on repos [GHRepository@35995c5a[description=Source for journal.physiomeproject.org.,homepage=<null>,name=journal-website,fork=false,archived=false,size=16230,milestones={},language=HTML,commits={},source=<null>,parent=<null>,responseHeaderFields={null=[HTTP/1.1 200 OK], Access-Control-Allow-Origin=[*], Access-Control-Expose-Headers=[ETag, Link, Location, Retry-After, X-GitHub-OTP, X-RateLimit-Limit, X-RateLimit-Remaining, X-RateLimit-Reset, X-OAuth-Scopes, X-Accepted-OAuth-Scopes, X-Poll-Interval, X-GitHub-Media-Type, Deprecation, Sunset], Cache-Control=[private, max-age=60, s-maxage=60], Content-Encoding=[gzip], Content-Security-Policy=[default-src 'none'], Content-Type=[application/json; charset=utf-8], Date=[Thu, 11 Jun 2020 04:19:25 GMT], ETag=[W/"ea7793d5edda1fe92b7a36fb2b1a3708"], Last-Modified=[Thu, 11 Jun 2020 04:19:06 GMT], OkHttp-Received-Millis=[1591849165841], OkHttp-Response-Source=[CACHE 200], OkHttp-Selected-Protocol=[http/1.1], OkHttp-Sent-Millis=[1591849165519], Referrer-Policy=[origin-when-cross-origin, strict-origin-when-cross-origin], Server=[GitHub.com], Status=[200 OK], Strict-Transport-Security=[max-age=31536000; includeSubdomains; preload], Transfer-Encoding=[chunked], Vary=[Accept, Authorization, Cookie, X-GitHub-OTP, Accept-Encoding, Accept, X-Requested-With, Accept-Encoding], X-Accepted-OAuth-Scopes=[repo], X-Content-Type-Options=[nosniff], X-Frame-Options=[deny], X-GitHub-Media-Type=[github.v3; format=json], X-GitHub-Request-Id=[DDAC:3C4B:A3E44:BFACA:5EE1B0CD], X-OAuth-Scopes=[admin:repo_hook, repo, repo:status], X-RateLimit-Limit=[5000], X-RateLimit-Remaining=[4999], X-RateLimit-Reset=[1591852765], X-XSS-Protection=[1; mode=block]},url=https://api.github.com/repos/Physiome/journal-website,id=94735176]] (sha:3ea9d0b) with context:journaldev-build Setting commit status on GitHub for https://github.com/Physiome/journal-website/commit/3ea9d0b7aadbb8cbebe6205e254870c26bd58902 Finished: FAILURE