Console Output
Started by upstream project "OpenCOR_Linux" build number 1188
originally caused by:
GitHub pull request #2426 of commit 7113fa533667aed72cc88202da6a8bdc01f6702a, no merge conflicts.
Started by user Alan Garny
Started by upstream project "OpenCOR_Linux" build number 1186
originally caused by:
GitHub pull request #2426 of commit 7113fa533667aed72cc88202da6a8bdc01f6702a, no merge conflicts.
Running as SYSTEM
Building remotely on Ubuntu_16.04_bioeng49 (buildslave Testing) in workspace /home/cmiss/Jenkins/workspace/OpenCOR_Linux/Slave/Ubuntu_16.04_bioeng49
The recommended git tool is: NONE
No credentials specified
> git rev-parse --is-inside-work-tree # timeout=10
Fetching changes from the remote Git repository
> git config remote.Linux.url https://github.com/opencor/opencor.git # timeout=10
Fetching upstream changes from https://github.com/opencor/opencor.git
> git --version # timeout=10
> git --version # 'git version 2.17.1'
> git fetch --tags --progress -- https://github.com/opencor/opencor.git +refs/pull/*:refs/remotes/origin/pr/* # timeout=10
JENKINS-19022: warning: possible memory leak due to Git plugin usage; see: https://wiki.jenkins.io/display/JENKINS/Remove+Git+Plugin+BuildsByBranch+BuildData
Checking out Revision 6c7396f5d71dbe28ea240340ea7932eb9d629653 (origin/pr/2426/merge)
> git config core.sparsecheckout # timeout=10
> git checkout -f 6c7396f5d71dbe28ea240340ea7932eb9d629653 # timeout=10
Commit message: "Merge 7113fa533667aed72cc88202da6a8bdc01f6702a into 1ac3c48a5c8b53224b9da06233be45cc32640d52"
> git rev-list --no-walk 6c7396f5d71dbe28ea240340ea7932eb9d629653 # timeout=10
[Ubuntu_16.04_bioeng49] $ /bin/sh -xe /tmp/jenkins15074625821556941972.sh
+ python3
+ res=1
+ [ 1 -eq 0 ]
+ echo Compiling and testing this commit...
Compiling and testing this commit...
+ export PATH=/opt/Qt/5.12.10/gcc_64/bin:/opt/Qt/5.6/gcc_64/bin:/home/cmiss/localNode/node-v10.15.0-linux-x64/bin:/opt/Qt/5.6/gcc_64/bin:/home/cmiss/localNode/node-v10.15.0-linux-x64/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin
+ ./clean
[44;37;1mCleaning OpenCOR...[0m
[42;37;1mAll done![0m
+ cd build
+ cmake -G Ninja -DCMAKE_BUILD_TYPE=Release -DENABLE_SAMPLE_PLUGINS=ON -DENABLE_TEST_PLUGINS=ON -DENABLE_TESTS=ON ..
-- The C compiler identification is GNU 8.4.0
-- The CXX compiler identification is GNU 8.4.0
-- Check for working C compiler: /usr/bin/cc
-- Check for working C compiler: /usr/bin/cc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Check for working CXX compiler: /usr/bin/c++
-- Check for working CXX compiler: /usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
Building a release version of OpenCOR using Qt 5.12.10 LTS...
Retrieving the 'Python' package...
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-- Configuring done
-- Generating done
-- Build files have been written to: /home/cmiss/Jenkins/workspace/OpenCOR_Linux/Slave/Ubuntu_16.04_bioeng49/build
+ exitCode=0
+ [ 0 -ne 0 ]
+ ninja
[1/1357] Running utility command for COPY_PythonPlugin_EXTERNAL_BINARIES
[2/1357] Automatic MOC and UIC for target OpenSSLPlugin
[3/1357] Automatic MOC and UIC for target zlibPlugin
[4/1357] Building CXX object src/plugins/thirdParty/OpenSSL/CMakeFiles/OpenSSLPlugin.dir/__/__/plugininfo.cpp.o
[5/1357] Automatic MOC and UIC for target PythonPlugin
[6/1357] Building CXX object src/plugins/thirdParty/OpenSSL/CMakeFiles/OpenSSLPlugin.dir/src/opensslplugin.cpp.o
[7/1357] Building CXX object src/plugins/thirdParty/zlib/CMakeFiles/zlibPlugin.dir/__/__/plugininfo.cpp.o
[8/1357] Building CXX object src/plugins/thirdParty/OpenSSL/CMakeFiles/OpenSSLPlugin.dir/OpenSSLPlugin_autogen/mocs_compilation.cpp.o
[9/1357] Building CXX object src/plugins/thirdParty/zlib/CMakeFiles/zlibPlugin.dir/zlibPlugin_autogen/mocs_compilation.cpp.o
[10/1357] Building CXX object src/plugins/thirdParty/zlib/CMakeFiles/zlibPlugin.dir/src/zlibplugin.cpp.o
[11/1357] Linking CXX shared library src/plugins/thirdParty/OpenSSL/libOpenSSL.so
[12/1357] Building CXX object src/plugins/thirdParty/Python/CMakeFiles/PythonPlugin.dir/src/pythonplugin.cpp.o
[13/1357] Building CXX object src/plugins/thirdParty/Python/CMakeFiles/PythonPlugin.dir/__/__/plugininfo.cpp.o
[14/1357] Linking CXX shared library src/plugins/thirdParty/zlib/libzlib.so
[15/1357] Building CXX object src/plugins/thirdParty/Python/CMakeFiles/PythonPlugin.dir/PythonPlugin_autogen/mocs_compilation.cpp.o
[16/1357] Automatic MOC and UIC for target runtests
[17/1357] Generating tests.txt
[18/1357] Generating sourcedirectory.txt
[19/1357] Generating builddirectory.txt
[20/1357] Automatic RCC for src/tests/res/tests.qrc
[21/1357] Linking CXX shared library src/plugins/thirdParty/Python/libPython.so
FAILED: src/plugins/thirdParty/Python/libPython.so
: && /usr/bin/c++ -fPIC -Wall -W -Werror -no-pie -O3 -ffast-math -Wl,-s -Wl,-rpath-link,/opt/Qt/5.12.10/gcc_64/lib -Wl,-rpath,'$ORIGIN' -Wl,-rpath,'$ORIGIN/../../lib' -shared -Wl,-soname,libPython.so -o src/plugins/thirdParty/Python/libPython.so src/plugins/thirdParty/Python/CMakeFiles/PythonPlugin.dir/PythonPlugin_autogen/mocs_compilation.cpp.o src/plugins/thirdParty/Python/CMakeFiles/PythonPlugin.dir/__/__/plugininfo.cpp.o src/plugins/thirdParty/Python/CMakeFiles/PythonPlugin.dir/src/pythonplugin.cpp.o /opt/Qt/5.12.10/gcc_64/lib/libQt5Core.so.5.12.10 ../ext/src/plugins/thirdParty/Python/./lib/libpython3.7m.so ../ext/src/plugins/thirdParty/Python/./lib/libbz2.so ../ext/src/plugins/thirdParty/Python/./lib/liblzma.so ../ext/src/plugins/thirdParty/Python/./lib/libsqlite3.so && cd /home/cmiss/Jenkins/workspace/OpenCOR_Linux/Slave/Ubuntu_16.04_bioeng49/build/src/plugins/thirdParty/Python && /usr/local/bin/cmake -E copy /home/cmiss/Jenkins/workspace/OpenCOR_Linux/Slave/Ubuntu_16.04_bioeng49/build/src/plugins/thirdParty/Python/libPython.so /home/cmiss/Jenkins/workspace/OpenCOR_Linux/Slave/Ubuntu_16.04_bioeng49/build/plugins/OpenCOR/libPython.so && cd /home/cmiss/Jenkins/workspace/OpenCOR_Linux/Slave/Ubuntu_16.04_bioeng49/build/src/plugins/thirdParty/Python && /home/cmiss/Jenkins/workspace/OpenCOR_Linux/Slave/Ubuntu_16.04_bioeng49/build/runpath2rpath /home/cmiss/Jenkins/workspace/OpenCOR_Linux/Slave/Ubuntu_16.04_bioeng49/build/src/plugins/thirdParty/Python/libPython.so && cd /home/cmiss/Jenkins/workspace/OpenCOR_Linux/Slave/Ubuntu_16.04_bioeng49/build/src/plugins/thirdParty/Python && /home/cmiss/Jenkins/workspace/OpenCOR_Linux/Slave/Ubuntu_16.04_bioeng49/ext/src/plugins/thirdParty/Python/./bin/python3 /home/cmiss/Jenkins/workspace/OpenCOR_Linux/Slave/Ubuntu_16.04_bioeng49/ext/src/plugins/thirdParty/Python/./bin/set_python_path.py /home/cmiss/Jenkins/workspace/OpenCOR_Linux/Slave/Ubuntu_16.04_bioeng49/ext/src/plugins/thirdParty/Python/. -s
/home/cmiss/Jenkins/workspace/OpenCOR_Linux/Slave/Ubuntu_16.04_bioeng49/ext/src/plugins/thirdParty/Python/./bin/python3: /lib/x86_64-linux-gnu/libm.so.6: version `GLIBC_2.29' not found (required by /home/cmiss/Jenkins/workspace/OpenCOR_Linux/Slave/Ubuntu_16.04_bioeng49/ext/src/plugins/thirdParty/Python/bin/../lib/libpython3.7m.so)
/home/cmiss/Jenkins/workspace/OpenCOR_Linux/Slave/Ubuntu_16.04_bioeng49/ext/src/plugins/thirdParty/Python/./bin/python3: /lib/x86_64-linux-gnu/libc.so.6: version `GLIBC_2.28' not found (required by /home/cmiss/Jenkins/workspace/OpenCOR_Linux/Slave/Ubuntu_16.04_bioeng49/ext/src/plugins/thirdParty/Python/bin/../lib/libpython3.7m.so)
[22/1357] Building CXX object CMakeFiles/runtests.dir/runtests_autogen/mocs_compilation.cpp.o
[23/1357] Automatic MOC and UIC for target libSBMLPlugin
ninja: build stopped: subcommand failed.
Build step 'Execute shell' marked build as failure
[Set GitHub commit status (universal)] ERROR on repos [GHRepository@a46a924[nodeId=MDEwOlJlcG9zaXRvcnk5OTU3NjY3,description=OpenCOR is a cross-platform modelling environment, which can be used to organise, edit, simulate and analyse CellML files.,homepage=https://opencor.ws/,name=opencor,fork=false,archived=false,size=176387,milestones={},language=C++,commits={},source=<null>,parent=<null>,isTemplate=<null>,url=https://api.github.com/repos/opencor/opencor,id=9957667,nodeId=<null>,createdAt=2013-05-09T11:07:58Z,updatedAt=2020-11-30T03:37:34Z]] (sha:6c7396f) with context:OpenCOR_Linux/Slave=Ubuntu_16.04_bioeng49
Setting commit status on GitHub for https://github.com/opencor/opencor/commit/6c7396f5d71dbe28ea240340ea7932eb9d629653
Finished: FAILURE
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