Started by GitHub push by KarinLundengard
Running as SYSTEM
Building remotely on Ubuntu_16.04_bioeng49 (buildslave Testing) in workspace /home/cmiss/Jenkins/workspace/PhysiomeJournalSite
The recommended git tool is: NONE
No credentials specified
 > git rev-parse --is-inside-work-tree # timeout=10
Fetching changes from the remote Git repository
 > git config remote.origin.url https://github.com/Physiome/journal-website # timeout=10
Fetching upstream changes from https://github.com/Physiome/journal-website
 > git --version # timeout=10
 > git --version # 'git version 2.17.1'
 > git fetch --tags --progress -- https://github.com/Physiome/journal-website +refs/heads/*:refs/remotes/origin/* # timeout=10
 > git rev-parse refs/remotes/origin/master^{commit} # timeout=10
 > git rev-parse refs/remotes/origin/origin/master^{commit} # timeout=10
Checking out Revision 2bc479d5be67a6f0a750a0eeb5d498cdaeb657cb (refs/remotes/origin/master)
 > git config core.sparsecheckout # timeout=10
 > git checkout -f 2bc479d5be67a6f0a750a0eeb5d498cdaeb657cb # timeout=10
Commit message: "Merge pull request #77 from Physiome/journaldev"
 > git rev-list --no-walk 0e16b5967f9228ed440351abde9a74dcd8dc48b2 # timeout=10
[PhysiomeJournalSite] $ /bin/sh -xe /tmp/shiningpanda11165785423663398268.sh
+ make deps
pip install -r py-requirements.txt
DEPRECATION: Python 2.7 reached the end of its life on January 1st, 2020. Please upgrade your Python as Python 2.7 is no longer maintained. pip 21.0 will drop support for Python 2.7 in January 2021. More details about Python 2 support in pip can be found at https://pip.pypa.io/en/latest/development/release-process/#python-2-support
Collecting pelican>3.6
  Using cached pelican-4.5.0-py2.py3-none-any.whl (673 kB)
Collecting markdown
  Using cached Markdown-3.1.1-py2.py3-none-any.whl (87 kB)
Requirement already satisfied: feedgenerator>=1.9 in /home/cmiss/Jenkins/shiningpanda/jobs/1d46dbd3/virtualenvs/d41d8cd9/lib/python2.7/site-packages (from pelican>3.6->-r py-requirements.txt (line 1)) (1.9.1)
Requirement already satisfied: blinker in /home/cmiss/Jenkins/shiningpanda/jobs/1d46dbd3/virtualenvs/d41d8cd9/lib/python2.7/site-packages (from pelican>3.6->-r py-requirements.txt (line 1)) (1.4)
Requirement already satisfied: unidecode in /home/cmiss/Jenkins/shiningpanda/jobs/1d46dbd3/virtualenvs/d41d8cd9/lib/python2.7/site-packages (from pelican>3.6->-r py-requirements.txt (line 1)) (1.1.1)
Requirement already satisfied: pytz>=0a in /home/cmiss/Jenkins/shiningpanda/jobs/1d46dbd3/virtualenvs/d41d8cd9/lib/python2.7/site-packages (from pelican>3.6->-r py-requirements.txt (line 1)) (2020.1)
Requirement already satisfied: python-dateutil in /home/cmiss/Jenkins/shiningpanda/jobs/1d46dbd3/virtualenvs/d41d8cd9/lib/python2.7/site-packages (from pelican>3.6->-r py-requirements.txt (line 1)) (2.8.1)
Requirement already satisfied: jinja2>=2.11 in /home/cmiss/Jenkins/shiningpanda/jobs/1d46dbd3/virtualenvs/d41d8cd9/lib/python2.7/site-packages (from pelican>3.6->-r py-requirements.txt (line 1)) (2.11.2)
Requirement already satisfied: docutils>=0.15 in /home/cmiss/Jenkins/shiningpanda/jobs/1d46dbd3/virtualenvs/d41d8cd9/lib/python2.7/site-packages (from pelican>3.6->-r py-requirements.txt (line 1)) (0.16)
Requirement already satisfied: pygments in /home/cmiss/Jenkins/shiningpanda/jobs/1d46dbd3/virtualenvs/d41d8cd9/lib/python2.7/site-packages (from pelican>3.6->-r py-requirements.txt (line 1)) (2.5.2)
Requirement already satisfied: setuptools>=36 in /home/cmiss/Jenkins/shiningpanda/jobs/1d46dbd3/virtualenvs/d41d8cd9/lib/python2.7/site-packages (from markdown->-r py-requirements.txt (line 2)) (44.1.1)
Requirement already satisfied: six in /home/cmiss/Jenkins/shiningpanda/jobs/1d46dbd3/virtualenvs/d41d8cd9/lib/python2.7/site-packages (from feedgenerator>=1.9->pelican>3.6->-r py-requirements.txt (line 1)) (1.15.0)
Requirement already satisfied: MarkupSafe>=0.23 in /home/cmiss/Jenkins/shiningpanda/jobs/1d46dbd3/virtualenvs/d41d8cd9/lib/python2.7/site-packages (from jinja2>=2.11->pelican>3.6->-r py-requirements.txt (line 1)) (1.1.1)
Installing collected packages: pelican, markdown
ERROR: Exception:
Traceback (most recent call last):
  File "/home/cmiss/Jenkins/shiningpanda/jobs/1d46dbd3/virtualenvs/d41d8cd9/local/lib/python2.7/site-packages/pip/_internal/cli/base_command.py", line 216, in _main
    status = self.run(options, args)
  File "/home/cmiss/Jenkins/shiningpanda/jobs/1d46dbd3/virtualenvs/d41d8cd9/local/lib/python2.7/site-packages/pip/_internal/cli/req_command.py", line 182, in wrapper
    return func(self, options, args)
  File "/home/cmiss/Jenkins/shiningpanda/jobs/1d46dbd3/virtualenvs/d41d8cd9/local/lib/python2.7/site-packages/pip/_internal/commands/install.py", line 421, in run
    pycompile=options.compile,
  File "/home/cmiss/Jenkins/shiningpanda/jobs/1d46dbd3/virtualenvs/d41d8cd9/local/lib/python2.7/site-packages/pip/_internal/req/__init__.py", line 90, in install_given_reqs
    pycompile=pycompile,
  File "/home/cmiss/Jenkins/shiningpanda/jobs/1d46dbd3/virtualenvs/d41d8cd9/local/lib/python2.7/site-packages/pip/_internal/req/req_install.py", line 821, in install
    requested=self.user_supplied,
  File "/home/cmiss/Jenkins/shiningpanda/jobs/1d46dbd3/virtualenvs/d41d8cd9/local/lib/python2.7/site-packages/pip/_internal/operations/install/wheel.py", line 860, in install_wheel
    requested=requested,
  File "/home/cmiss/Jenkins/shiningpanda/jobs/1d46dbd3/virtualenvs/d41d8cd9/local/lib/python2.7/site-packages/pip/_internal/operations/install/wheel.py", line 689, in _install_wheel
    file.save()
  File "/home/cmiss/Jenkins/shiningpanda/jobs/1d46dbd3/virtualenvs/d41d8cd9/local/lib/python2.7/site-packages/pip/_internal/operations/install/wheel.py", line 452, in save
    zipinfo = self._getinfo()
  File "/home/cmiss/Jenkins/shiningpanda/jobs/1d46dbd3/virtualenvs/d41d8cd9/local/lib/python2.7/site-packages/pip/_internal/operations/install/wheel.py", line 431, in _getinfo
    return self._zip_file.getinfo(self.src_record_path.encode("utf-8"))
  File "/usr/lib/python2.7/zipfile.py", line 932, in getinfo
    'There is no item named %r in the archive' % name)
KeyError: "There is no item named 'pelican/tests/output/custom_locale/posts/2010/de\\xcc\\x81cembre/02/this-is-a-super-article/index.html' in the archive"
Makefile:61: recipe for target 'deps' failed
make: *** [deps] Error 2
Build step 'Virtualenv Builder' marked build as failure
Sending e-mails to: noel.zeng@auckland.ac.nz
ERROR: Could not connect to SMTP host: localhost, port: 25
javax.mail.MessagingException: Could not connect to SMTP host: localhost, port: 25;
  nested exception is:
	java.net.ConnectException: Connection refused (Connection refused)
	at com.sun.mail.smtp.SMTPTransport.openServer(SMTPTransport.java:1934)
	at com.sun.mail.smtp.SMTPTransport.protocolConnect(SMTPTransport.java:638)
	at javax.mail.Service.connect(Service.java:295)
	at javax.mail.Service.connect(Service.java:176)
	at javax.mail.Service.connect(Service.java:125)
	at javax.mail.Transport.send0(Transport.java:194)
	at javax.mail.Transport.send(Transport.java:124)
	at hudson.tasks.MailSender.run(MailSender.java:130)
	at hudson.tasks.Mailer.perform(Mailer.java:176)
	at hudson.tasks.Mailer.perform(Mailer.java:139)
	at hudson.tasks.BuildStepMonitor$1.perform(BuildStepMonitor.java:20)
	at hudson.model.AbstractBuild$AbstractBuildExecution.perform(AbstractBuild.java:741)
	at hudson.model.AbstractBuild$AbstractBuildExecution.performAllBuildSteps(AbstractBuild.java:690)
	at hudson.model.Build$BuildExecution.post2(Build.java:186)
	at hudson.model.AbstractBuild$AbstractBuildExecution.post(AbstractBuild.java:635)
	at hudson.model.Run.execute(Run.java:1905)
	at hudson.model.FreeStyleBuild.run(FreeStyleBuild.java:43)
	at hudson.model.ResourceController.execute(ResourceController.java:97)
	at hudson.model.Executor.run(Executor.java:428)
Caused by: java.net.ConnectException: Connection refused (Connection refused)
	at java.net.PlainSocketImpl.socketConnect(Native Method)
	at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350)
	at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206)
	at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188)
	at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392)
	at java.net.Socket.connect(Socket.java:607)
	at com.sun.mail.util.SocketFetcher.createSocket(SocketFetcher.java:286)
	at com.sun.mail.util.SocketFetcher.getSocket(SocketFetcher.java:231)
	at com.sun.mail.smtp.SMTPTransport.openServer(SMTPTransport.java:1900)
	... 18 more
Finished: FAILURE