Started by GitHub push by KarinLundengard
Running as SYSTEM
Building remotely on Ubuntu_16.04_bioeng49 (buildslave Testing) in workspace /home/cmiss/Jenkins/workspace/PhysiomeJournalSite
No credentials specified
 > git rev-parse --is-inside-work-tree # timeout=10
Fetching changes from the remote Git repository
 > git config remote.origin.url https://github.com/Physiome/journal-website # timeout=10
Fetching upstream changes from https://github.com/Physiome/journal-website
 > git --version # timeout=10
 > git fetch --tags --progress -- https://github.com/Physiome/journal-website +refs/heads/*:refs/remotes/origin/* # timeout=10
 > git rev-parse refs/remotes/origin/master^{commit} # timeout=10
 > git rev-parse refs/remotes/origin/origin/master^{commit} # timeout=10
Checking out Revision c6598b877a41320167f8d2d6cdcee06841d9771c (refs/remotes/origin/master)
 > git config core.sparsecheckout # timeout=10
 > git checkout -f c6598b877a41320167f8d2d6cdcee06841d9771c # timeout=10
Commit message: "Merge pull request #72 from KarinLundengard/TemporaryStagingForIUPS"
 > git rev-list --no-walk 5f59840856c507ba6b1ce33508514878d1d09ba2 # timeout=10
[PhysiomeJournalSite] $ /usr/bin/python2.7 /home/cmiss/Jenkins/shiningpanda/jobs/1d46dbd3/virtualenv.py /home/cmiss/Jenkins/shiningpanda/jobs/1d46dbd3/virtualenvs/d41d8cd9
New python executable in /home/cmiss/Jenkins/shiningpanda/jobs/1d46dbd3/virtualenvs/d41d8cd9/bin/python2.7
Also creating executable in /home/cmiss/Jenkins/shiningpanda/jobs/1d46dbd3/virtualenvs/d41d8cd9/bin/python
Installing setuptools, pip, wheel...done.
[PhysiomeJournalSite] $ /bin/sh -xe /tmp/shiningpanda6870517376181107984.sh
+ make deps
pip install -r py-requirements.txt
DEPRECATION: Python 2.7 reached the end of its life on January 1st, 2020. Please upgrade your Python as Python 2.7 is no longer maintained. pip 21.0 will drop support for Python 2.7 in January 2021. More details about Python 2 support in pip can be found at https://pip.pypa.io/en/latest/development/release-process/#python-2-support
Collecting pelican>3.6
  Using cached pelican-4.5.0-py2.py3-none-any.whl (673 kB)
Collecting markdown
  Using cached Markdown-3.1.1-py2.py3-none-any.whl (87 kB)
Processing /home/cmiss/.cache/pip/wheels/68/1c/e0/44629d259095aa5f4af96d3c4638f46998e4c5b9b02c1cad3f/feedgenerator-1.9.1-py2-none-any.whl
Processing /home/cmiss/.cache/pip/wheels/92/a0/00/8690a57883956a301d91cf4ec999cc0b258b01e3f548f86e89/blinker-1.4-cp27-none-any.whl
Collecting unidecode
  Using cached Unidecode-1.1.1-py2.py3-none-any.whl (238 kB)
Collecting pytz>=0a
  Using cached pytz-2020.1-py2.py3-none-any.whl (510 kB)
Collecting python-dateutil
  Using cached python_dateutil-2.8.1-py2.py3-none-any.whl (227 kB)
Collecting jinja2>=2.11
  Using cached Jinja2-2.11.2-py2.py3-none-any.whl (125 kB)
Collecting docutils>=0.15
  Using cached docutils-0.16-py2.py3-none-any.whl (548 kB)
Collecting pygments
  Using cached Pygments-2.5.2-py2.py3-none-any.whl (896 kB)
Requirement already satisfied: setuptools>=36 in /home/cmiss/Jenkins/shiningpanda/jobs/1d46dbd3/virtualenvs/d41d8cd9/lib/python2.7/site-packages (from markdown->-r py-requirements.txt (line 2)) (44.1.1)
Collecting six
  Using cached six-1.15.0-py2.py3-none-any.whl (10 kB)
Collecting MarkupSafe>=0.23
  Using cached MarkupSafe-1.1.1-cp27-cp27mu-manylinux1_x86_64.whl (24 kB)
Installing collected packages: pytz, six, feedgenerator, blinker, unidecode, python-dateutil, MarkupSafe, jinja2, docutils, pygments, pelican, markdown
ERROR: Exception:
Traceback (most recent call last):
  File "/home/cmiss/Jenkins/shiningpanda/jobs/1d46dbd3/virtualenvs/d41d8cd9/local/lib/python2.7/site-packages/pip/_internal/cli/base_command.py", line 216, in _main
    status = self.run(options, args)
  File "/home/cmiss/Jenkins/shiningpanda/jobs/1d46dbd3/virtualenvs/d41d8cd9/local/lib/python2.7/site-packages/pip/_internal/cli/req_command.py", line 182, in wrapper
    return func(self, options, args)
  File "/home/cmiss/Jenkins/shiningpanda/jobs/1d46dbd3/virtualenvs/d41d8cd9/local/lib/python2.7/site-packages/pip/_internal/commands/install.py", line 421, in run
    pycompile=options.compile,
  File "/home/cmiss/Jenkins/shiningpanda/jobs/1d46dbd3/virtualenvs/d41d8cd9/local/lib/python2.7/site-packages/pip/_internal/req/__init__.py", line 90, in install_given_reqs
    pycompile=pycompile,
  File "/home/cmiss/Jenkins/shiningpanda/jobs/1d46dbd3/virtualenvs/d41d8cd9/local/lib/python2.7/site-packages/pip/_internal/req/req_install.py", line 821, in install
    requested=self.user_supplied,
  File "/home/cmiss/Jenkins/shiningpanda/jobs/1d46dbd3/virtualenvs/d41d8cd9/local/lib/python2.7/site-packages/pip/_internal/operations/install/wheel.py", line 860, in install_wheel
    requested=requested,
  File "/home/cmiss/Jenkins/shiningpanda/jobs/1d46dbd3/virtualenvs/d41d8cd9/local/lib/python2.7/site-packages/pip/_internal/operations/install/wheel.py", line 689, in _install_wheel
    file.save()
  File "/home/cmiss/Jenkins/shiningpanda/jobs/1d46dbd3/virtualenvs/d41d8cd9/local/lib/python2.7/site-packages/pip/_internal/operations/install/wheel.py", line 452, in save
    zipinfo = self._getinfo()
  File "/home/cmiss/Jenkins/shiningpanda/jobs/1d46dbd3/virtualenvs/d41d8cd9/local/lib/python2.7/site-packages/pip/_internal/operations/install/wheel.py", line 431, in _getinfo
    return self._zip_file.getinfo(self.src_record_path.encode("utf-8"))
  File "/usr/lib/python2.7/zipfile.py", line 932, in getinfo
    'There is no item named %r in the archive' % name)
KeyError: "There is no item named 'pelican/tests/output/custom_locale/posts/2010/de\\xcc\\x81cembre/02/this-is-a-super-article/index.html' in the archive"
Makefile:61: recipe for target 'deps' failed
make: *** [deps] Error 2
Build step 'Virtualenv Builder' marked build as failure
Sending e-mails to: noel.zeng@auckland.ac.nz
ERROR: Could not connect to SMTP host: localhost, port: 25
javax.mail.MessagingException: Could not connect to SMTP host: localhost, port: 25;
  nested exception is:
	java.net.ConnectException: Connection refused (Connection refused)
	at com.sun.mail.smtp.SMTPTransport.openServer(SMTPTransport.java:1934)
	at com.sun.mail.smtp.SMTPTransport.protocolConnect(SMTPTransport.java:638)
	at javax.mail.Service.connect(Service.java:295)
	at javax.mail.Service.connect(Service.java:176)
	at javax.mail.Service.connect(Service.java:125)
	at javax.mail.Transport.send0(Transport.java:194)
	at javax.mail.Transport.send(Transport.java:124)
	at hudson.tasks.MailSender.run(MailSender.java:130)
	at hudson.tasks.Mailer.perform(Mailer.java:176)
	at hudson.tasks.Mailer.perform(Mailer.java:139)
	at hudson.tasks.BuildStepMonitor$1.perform(BuildStepMonitor.java:20)
	at hudson.model.AbstractBuild$AbstractBuildExecution.perform(AbstractBuild.java:741)
	at hudson.model.AbstractBuild$AbstractBuildExecution.performAllBuildSteps(AbstractBuild.java:690)
	at hudson.model.Build$BuildExecution.post2(Build.java:186)
	at hudson.model.AbstractBuild$AbstractBuildExecution.post(AbstractBuild.java:635)
	at hudson.model.Run.execute(Run.java:1905)
	at hudson.model.FreeStyleBuild.run(FreeStyleBuild.java:43)
	at hudson.model.ResourceController.execute(ResourceController.java:97)
	at hudson.model.Executor.run(Executor.java:428)
Caused by: java.net.ConnectException: Connection refused (Connection refused)
	at java.net.PlainSocketImpl.socketConnect(Native Method)
	at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350)
	at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206)
	at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188)
	at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392)
	at java.net.Socket.connect(Socket.java:607)
	at com.sun.mail.util.SocketFetcher.createSocket(SocketFetcher.java:286)
	at com.sun.mail.util.SocketFetcher.getSocket(SocketFetcher.java:231)
	at com.sun.mail.smtp.SMTPTransport.openServer(SMTPTransport.java:1900)
	... 18 more
Finished: FAILURE