Started by user Noel
Building remotely on Ubuntu_16.04_bioeng49 (buildslave Testing) in workspace /home/cmiss/Jenkins/workspace/PhysiomeJournal_website
> git rev-parse --is-inside-work-tree # timeout=10
Fetching changes from the remote Git repository
> git config remote.origin.url https://github.com/Physiome/journal-website # timeout=10
Fetching upstream changes from https://github.com/Physiome/journal-website
> git --version # timeout=10
> git fetch --tags --progress https://github.com/Physiome/journal-website +refs/heads/*:refs/remotes/origin/*
> git rev-parse refs/remotes/origin/master^{commit} # timeout=10
> git rev-parse refs/remotes/origin/origin/master^{commit} # timeout=10
Checking out Revision 7141c104121bacead55bf73e72e968df71de1520 (refs/remotes/origin/master)
> git config core.sparsecheckout # timeout=10
> git checkout -f 7141c104121bacead55bf73e72e968df71de1520
> git rev-list 7141c104121bacead55bf73e72e968df71de1520 # timeout=10
[PhysiomeJournal_website] $ /bin/sh -xe /tmp/shiningpanda1651025980940406597.sh
+ make deps
pip install -r py-requirements.txt
Requirement already satisfied: pelican>3.6 in /home/cmiss/Jenkins/shiningpanda/jobs/b6ec0b39/virtualenvs/d41d8cd9/lib/python2.7/site-packages (from -r py-requirements.txt (line 1))
Requirement already satisfied: markdown in /home/cmiss/Jenkins/shiningpanda/jobs/b6ec0b39/virtualenvs/d41d8cd9/lib/python2.7/site-packages (from -r py-requirements.txt (line 2))
Requirement already satisfied: python-dateutil in /home/cmiss/Jenkins/shiningpanda/jobs/b6ec0b39/virtualenvs/d41d8cd9/lib/python2.7/site-packages (from pelican>3.6->-r py-requirements.txt (line 1))
Requirement already satisfied: feedgenerator>=1.9 in /home/cmiss/Jenkins/shiningpanda/jobs/b6ec0b39/virtualenvs/d41d8cd9/lib/python2.7/site-packages (from pelican>3.6->-r py-requirements.txt (line 1))
Requirement already satisfied: docutils in /home/cmiss/Jenkins/shiningpanda/jobs/b6ec0b39/virtualenvs/d41d8cd9/lib/python2.7/site-packages (from pelican>3.6->-r py-requirements.txt (line 1))
Requirement already satisfied: blinker in /home/cmiss/Jenkins/shiningpanda/jobs/b6ec0b39/virtualenvs/d41d8cd9/lib/python2.7/site-packages (from pelican>3.6->-r py-requirements.txt (line 1))
Requirement already satisfied: pygments in /home/cmiss/Jenkins/shiningpanda/jobs/b6ec0b39/virtualenvs/d41d8cd9/lib/python2.7/site-packages (from pelican>3.6->-r py-requirements.txt (line 1))
Requirement already satisfied: jinja2>=2.7 in /home/cmiss/Jenkins/shiningpanda/jobs/b6ec0b39/virtualenvs/d41d8cd9/lib/python2.7/site-packages (from pelican>3.6->-r py-requirements.txt (line 1))
Requirement already satisfied: unidecode in /home/cmiss/Jenkins/shiningpanda/jobs/b6ec0b39/virtualenvs/d41d8cd9/lib/python2.7/site-packages (from pelican>3.6->-r py-requirements.txt (line 1))
Requirement already satisfied: pytz>=0a in /home/cmiss/Jenkins/shiningpanda/jobs/b6ec0b39/virtualenvs/d41d8cd9/lib/python2.7/site-packages (from pelican>3.6->-r py-requirements.txt (line 1))
Requirement already satisfied: six>=1.4 in /home/cmiss/Jenkins/shiningpanda/jobs/b6ec0b39/virtualenvs/d41d8cd9/lib/python2.7/site-packages (from pelican>3.6->-r py-requirements.txt (line 1))
Requirement already satisfied: MarkupSafe>=0.23 in /home/cmiss/Jenkins/shiningpanda/jobs/b6ec0b39/virtualenvs/d41d8cd9/lib/python2.7/site-packages (from jinja2>=2.7->pelican>3.6->-r py-requirements.txt (line 1))
+ make html
pelican /home/cmiss/Jenkins/workspace/PhysiomeJournal_website/content -o /home/cmiss/Jenkins/workspace/PhysiomeJournal_website/output -s /home/cmiss/Jenkins/workspace/PhysiomeJournal_website/pelicanconf.py
Done: Processed 10 articles, 0 drafts, 5 pages and 0 hidden pages in 0.36 seconds.
+ scp -v -2 -r -o GlobalKnownHostsFile **** -i **** output pj-site@abiwebsrv02.bioeng.auckland.ac.nz:/home/pj-site/journaldev.physiomeproject.org/
Executing: program /usr/bin/ssh host abiwebsrv02.bioeng.auckland.ac.nz, user pj-site, command scp -v -r -d -t /home/pj-site/journaldev.physiomeproject.org/
OpenSSH_7.2p2 Ubuntu-4ubuntu2.1, OpenSSL 1.0.2g 1 Mar 2016
debug1: Reading configuration data /etc/ssh/ssh_config
debug1: /etc/ssh/ssh_config line 19: Applying options for *
debug1: Connecting to abiwebsrv02.bioeng.auckland.ac.nz [130.216.4.34] port 22.
debug1: Connection established.
debug1: identity file /home/cmiss/.ssh/id_rsa type 1
debug1: key_load_public: No such file or directory
debug1: identity file /home/cmiss/.ssh/id_rsa-cert type -1
debug1: key_load_public: No such file or directory
debug1: identity file /home/cmiss/.ssh/id_dsa type -1
debug1: key_load_public: No such file or directory
debug1: identity file /home/cmiss/.ssh/id_dsa-cert type -1
debug1: key_load_public: No such file or directory
debug1: identity file /home/cmiss/.ssh/id_ecdsa type -1
debug1: key_load_public: No such file or directory
debug1: identity file /home/cmiss/.ssh/id_ecdsa-cert type -1
debug1: key_load_public: No such file or directory
debug1: identity file /home/cmiss/.ssh/id_ed25519 type -1
debug1: key_load_public: No such file or directory
debug1: identity file /home/cmiss/.ssh/id_ed25519-cert type -1
debug1: Enabling compatibility mode for protocol 2.0
debug1: Local version string SSH-2.0-OpenSSH_7.2p2 Ubuntu-4ubuntu2.1
debug1: Remote protocol version 2.0, remote software version OpenSSH_6.6.1p1 Ubuntu-2ubuntu2.8
debug1: match: OpenSSH_6.6.1p1 Ubuntu-2ubuntu2.8 pat OpenSSH_6.6.1* compat 0x04000000
debug1: Authenticating to abiwebsrv02.bioeng.auckland.ac.nz:22 as 'pj-site'
debug1: SSH2_MSG_KEXINIT sent
debug1: SSH2_MSG_KEXINIT received
debug1: kex: algorithm: curve25519-sha256@libssh.org
debug1: kex: host key algorithm: ecdsa-sha2-nistp256
debug1: kex: server->client cipher: chacha20-poly1305@openssh.com MAC: <implicit> compression: none
debug1: kex: client->server cipher: chacha20-poly1305@openssh.com MAC: <implicit> compression: none
debug1: expecting SSH2_MSG_KEX_ECDH_REPLY
debug1: Server host key: ecdsa-sha2-nistp256 SHA256:nrl+uVNnKBIgl3yLEOD5DNhwRjwUUYwcQfwVtvox6as
debug1: read_passphrase: can't open /dev/tty: No such device or address
Host key verification failed.
lost connection
Build step 'Virtualenv Builder' marked build as failure
Sending e-mails to: noel.zeng@auckland.ac.nz
ERROR: Could not connect to SMTP host: localhost, port: 25
javax.mail.MessagingException: Could not connect to SMTP host: localhost, port: 25;
nested exception is:
java.net.ConnectException: Connection refused (Connection refused)
at com.sun.mail.smtp.SMTPTransport.openServer(SMTPTransport.java:1934)
at com.sun.mail.smtp.SMTPTransport.protocolConnect(SMTPTransport.java:638)
at javax.mail.Service.connect(Service.java:295)
at javax.mail.Service.connect(Service.java:176)
at javax.mail.Service.connect(Service.java:125)
at javax.mail.Transport.send0(Transport.java:194)
at javax.mail.Transport.send(Transport.java:124)
at hudson.tasks.MailSender.run(MailSender.java:131)
at hudson.tasks.Mailer.perform(Mailer.java:170)
at hudson.tasks.BuildStepCompatibilityLayer.perform(BuildStepCompatibilityLayer.java:81)
at hudson.tasks.BuildStepMonitor$1.perform(BuildStepMonitor.java:20)
at hudson.model.AbstractBuild$AbstractBuildExecution.perform(AbstractBuild.java:730)
at hudson.model.AbstractBuild$AbstractBuildExecution.performAllBuildSteps(AbstractBuild.java:676)
at hudson.model.Build$BuildExecution.post2(Build.java:186)
at hudson.model.AbstractBuild$AbstractBuildExecution.post(AbstractBuild.java:621)
at hudson.model.Run.execute(Run.java:1760)
at hudson.model.FreeStyleBuild.run(FreeStyleBuild.java:43)
at hudson.model.ResourceController.execute(ResourceController.java:97)
at hudson.model.Executor.run(Executor.java:415)
Caused by: java.net.ConnectException: Connection refused (Connection refused)
at java.net.PlainSocketImpl.socketConnect(Native Method)
at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350)
at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206)
at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188)
at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392)
at java.net.Socket.connect(Socket.java:589)
at com.sun.mail.util.SocketFetcher.createSocket(SocketFetcher.java:286)
at com.sun.mail.util.SocketFetcher.getSocket(SocketFetcher.java:231)
at com.sun.mail.smtp.SMTPTransport.openServer(SMTPTransport.java:1900)
... 18 more
Finished: FAILURE