Started by timer
Running as SYSTEM
Building remotely on Ubuntu_18.04_bioeng49 (buildslave Testing) in workspace /home/cmiss/Jenkins/workspace/SCKAN Connectivity
[WS-CLEANUP] Deleting project workspace...
[WS-CLEANUP] Deferred wipeout is used...
[WS-CLEANUP] Done
The recommended git tool is: NONE
No credentials specified
Cloning the remote Git repository
Cloning repository https://github.com/ABI-Software/scicrunch-knowledge-testing.git
 > git init /home/cmiss/Jenkins/workspace/SCKAN Connectivity # timeout=10
Fetching upstream changes from https://github.com/ABI-Software/scicrunch-knowledge-testing.git
 > git --version # timeout=10
 > git --version # 'git version 2.25.1'
 > git fetch --tags --force --progress -- https://github.com/ABI-Software/scicrunch-knowledge-testing.git +refs/heads/*:refs/remotes/origin/* # timeout=10
 > git config remote.origin.url https://github.com/ABI-Software/scicrunch-knowledge-testing.git # timeout=10
 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10
Avoid second fetch
 > git rev-parse refs/remotes/origin/main^{commit} # timeout=10
Checking out Revision c026ef9a42f3c7035315e3f05d82586e20b35559 (refs/remotes/origin/main)
 > git config core.sparsecheckout # timeout=10
 > git checkout -f c026ef9a42f3c7035315e3f05d82586e20b35559 # timeout=10
Commit message: "Improve testing to link to tagged documentation."
 > git rev-list --no-walk c026ef9a42f3c7035315e3f05d82586e20b35559 # timeout=10
[SCKAN Connectivity] $ /bin/sh -xe /tmp/shiningpanda15360564984093037613.sh
+ export SCICRUNCH_API_HOST=https://scicrunch.org/api/1/elastic/SPARC_PortalDatasets_pr
+ pip install -r requirements.txt
Collecting mapknowledge@ https://github.com/AnatomicMaps/map-knowledge/releases/download/v0.9.9/mapknowledge-0.9.9-py3-none-any.whl
  Downloading https://github.com/AnatomicMaps/map-knowledge/releases/download/v0.9.9/mapknowledge-0.9.9-py3-none-any.whl (15 kB)
Requirement already satisfied: requests==2.27.1 in /home/cmiss/Jenkins/shiningpanda/jobs/5a3744f0/virtualenvs/d41d8cd9/lib/python3.8/site-packages (from -r requirements.txt (line 1)) (2.27.1)
Requirement already satisfied: algoliasearch==2.6.2 in /home/cmiss/Jenkins/shiningpanda/jobs/5a3744f0/virtualenvs/d41d8cd9/lib/python3.8/site-packages (from -r requirements.txt (line 2)) (2.6.2)
Requirement already satisfied: boto3==1.17.67 in /home/cmiss/Jenkins/shiningpanda/jobs/5a3744f0/virtualenvs/d41d8cd9/lib/python3.8/site-packages (from -r requirements.txt (line 3)) (1.17.67)
Requirement already satisfied: certifi>=2017.4.17 in /home/cmiss/Jenkins/shiningpanda/jobs/5a3744f0/virtualenvs/d41d8cd9/lib/python3.8/site-packages (from requests==2.27.1->-r requirements.txt (line 1)) (2022.9.24)
Requirement already satisfied: charset-normalizer~=2.0.0 in /home/cmiss/Jenkins/shiningpanda/jobs/5a3744f0/virtualenvs/d41d8cd9/lib/python3.8/site-packages (from requests==2.27.1->-r requirements.txt (line 1)) (2.0.12)
Requirement already satisfied: idna<4,>=2.5 in /home/cmiss/Jenkins/shiningpanda/jobs/5a3744f0/virtualenvs/d41d8cd9/lib/python3.8/site-packages (from requests==2.27.1->-r requirements.txt (line 1)) (3.4)
Requirement already satisfied: urllib3<1.27,>=1.21.1 in /home/cmiss/Jenkins/shiningpanda/jobs/5a3744f0/virtualenvs/d41d8cd9/lib/python3.8/site-packages (from requests==2.27.1->-r requirements.txt (line 1)) (1.26.12)
Requirement already satisfied: botocore<1.21.0,>=1.20.67 in /home/cmiss/Jenkins/shiningpanda/jobs/5a3744f0/virtualenvs/d41d8cd9/lib/python3.8/site-packages (from boto3==1.17.67->-r requirements.txt (line 3)) (1.20.112)
Requirement already satisfied: s3transfer<0.5.0,>=0.4.0 in /home/cmiss/Jenkins/shiningpanda/jobs/5a3744f0/virtualenvs/d41d8cd9/lib/python3.8/site-packages (from boto3==1.17.67->-r requirements.txt (line 3)) (0.4.2)
Requirement already satisfied: jmespath<1.0.0,>=0.7.1 in /home/cmiss/Jenkins/shiningpanda/jobs/5a3744f0/virtualenvs/d41d8cd9/lib/python3.8/site-packages (from boto3==1.17.67->-r requirements.txt (line 3)) (0.10.0)
Requirement already satisfied: rdflib in /home/cmiss/Jenkins/shiningpanda/jobs/5a3744f0/virtualenvs/d41d8cd9/lib/python3.8/site-packages (from mapknowledge@ https://github.com/AnatomicMaps/map-knowledge/releases/download/v0.9.9/mapknowledge-0.9.9-py3-none-any.whl->-r requirements.txt (line 4)) (6.2.0)
Requirement already satisfied: networkx in /home/cmiss/Jenkins/shiningpanda/jobs/5a3744f0/virtualenvs/d41d8cd9/lib/python3.8/site-packages (from mapknowledge@ https://github.com/AnatomicMaps/map-knowledge/releases/download/v0.9.9/mapknowledge-0.9.9-py3-none-any.whl->-r requirements.txt (line 4)) (2.8.8)
Requirement already satisfied: python-dateutil<3.0.0,>=2.1 in /home/cmiss/Jenkins/shiningpanda/jobs/5a3744f0/virtualenvs/d41d8cd9/lib/python3.8/site-packages (from botocore<1.21.0,>=1.20.67->boto3==1.17.67->-r requirements.txt (line 3)) (2.8.2)
Requirement already satisfied: setuptools in /home/cmiss/Jenkins/shiningpanda/jobs/5a3744f0/virtualenvs/d41d8cd9/lib/python3.8/site-packages (from rdflib->mapknowledge@ https://github.com/AnatomicMaps/map-knowledge/releases/download/v0.9.9/mapknowledge-0.9.9-py3-none-any.whl->-r requirements.txt (line 4)) (65.6.0)
Requirement already satisfied: isodate in /home/cmiss/Jenkins/shiningpanda/jobs/5a3744f0/virtualenvs/d41d8cd9/lib/python3.8/site-packages (from rdflib->mapknowledge@ https://github.com/AnatomicMaps/map-knowledge/releases/download/v0.9.9/mapknowledge-0.9.9-py3-none-any.whl->-r requirements.txt (line 4)) (0.6.1)
Requirement already satisfied: pyparsing in /home/cmiss/Jenkins/shiningpanda/jobs/5a3744f0/virtualenvs/d41d8cd9/lib/python3.8/site-packages (from rdflib->mapknowledge@ https://github.com/AnatomicMaps/map-knowledge/releases/download/v0.9.9/mapknowledge-0.9.9-py3-none-any.whl->-r requirements.txt (line 4)) (3.0.9)
Requirement already satisfied: six>=1.5 in /home/cmiss/Jenkins/shiningpanda/jobs/5a3744f0/virtualenvs/d41d8cd9/lib/python3.8/site-packages (from python-dateutil<3.0.0,>=2.1->botocore<1.21.0,>=1.20.67->boto3==1.17.67->-r requirements.txt (line 3)) (1.16.0)
+ python -m unittest tests/nightly_tests/test_connectivity.py
F.
======================================================================
FAIL: test_connectivity_neuron_group (tests.nightly_tests.test_connectivity.ConnectivityTestCase)
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/home/cmiss/Jenkins/workspace/SCKAN Connectivity/tests/nightly_tests/test_connectivity.py", line 120, in test_connectivity_neuron_group
    assert len(knowledge.get('connectivity', [])) == len(KEAST_NEURON_PATH_5['connectivity']), 'Incorrect number of nodes for Keast neuron path 5'
AssertionError: Incorrect number of nodes for Keast neuron path 5

----------------------------------------------------------------------
Ran 2 tests in 4.174s

FAILED (failures=1)
Build step 'Virtualenv Builder' marked build as failure
[Slack Notifications] found #39 as previous completed, non-aborted build
[Slack Notifications] will send OnEveryFailureNotification because build matches and user preferences allow it
Finished: FAILURE