Started by user Alan Wu Running as SYSTEM Building remotely on Ubuntu_18.04_bioeng49 (buildslave Testing) in workspace /home/cmiss/Jenkins/workspace/SCKAN Connectivity [WS-CLEANUP] Deleting project workspace... [WS-CLEANUP] Deferred wipeout is used... The recommended git tool is: NONE No credentials specified Cloning the remote Git repository Cloning repository https://github.com/ABI-Software/scicrunch-knowledge-testing.git > git init /home/cmiss/Jenkins/workspace/SCKAN Connectivity # timeout=10 Fetching upstream changes from https://github.com/ABI-Software/scicrunch-knowledge-testing.git > git --version # timeout=10 > git --version # 'git version 2.25.1' > git fetch --tags --force --progress -- https://github.com/ABI-Software/scicrunch-knowledge-testing.git +refs/heads/*:refs/remotes/origin/* # timeout=10 > git config remote.origin.url https://github.com/ABI-Software/scicrunch-knowledge-testing.git # timeout=10 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10 Avoid second fetch > git rev-parse refs/remotes/origin/main^{commit} # timeout=10 Checking out Revision fa89eb739116cfa3cd33f7b54c333cef6f363b32 (refs/remotes/origin/main) > git config core.sparsecheckout # timeout=10 > git checkout -f fa89eb739116cfa3cd33f7b54c333cef6f363b32 # timeout=10 Commit message: "Merge pull request #8 from alan-wu/datasets-objects-testing" First time build. Skipping changelog. [SCKAN Connectivity] $ /usr/bin/python3.8 /home/cmiss/Jenkins/shiningpanda/jobs/5a3744f0/virtualenv.py /home/cmiss/Jenkins/shiningpanda/jobs/5a3744f0/virtualenvs/d41d8cd9 Using base prefix '/usr' New python executable in /home/cmiss/Jenkins/shiningpanda/jobs/5a3744f0/virtualenvs/d41d8cd9/bin/python3.8 Also creating executable in /home/cmiss/Jenkins/shiningpanda/jobs/5a3744f0/virtualenvs/d41d8cd9/bin/python Installing setuptools, pip, wheel...done. /home/cmiss/Jenkins/shiningpanda/jobs/5a3744f0/virtualenv.py:1041: DeprecationWarning: the imp module is deprecated in favour of importlib; see the module's documentation for alternative uses import imp [SCKAN Connectivity] $ /bin/sh -xe /tmp/shiningpanda5458460641791386842.sh + pip install -r requirements.txt Collecting mapknowledge@ https://github.com/AnatomicMaps/map-knowledge/releases/download/v0.9.9/mapknowledge-0.9.9-py3-none-any.whl Downloading https://github.com/AnatomicMaps/map-knowledge/releases/download/v0.9.9/mapknowledge-0.9.9-py3-none-any.whl (15 kB) Collecting requests==2.27.1 Using cached requests-2.27.1-py2.py3-none-any.whl (63 kB) Collecting algoliasearch==2.6.2 Using cached algoliasearch-2.6.2-py2.py3-none-any.whl (35 kB) Collecting boto3==1.17.67 Using cached boto3-1.17.67-py2.py3-none-any.whl (131 kB) Collecting idna<4,>=2.5 Using cached idna-3.4-py3-none-any.whl (61 kB) Collecting charset-normalizer~=2.0.0 Using cached charset_normalizer-2.0.12-py3-none-any.whl (39 kB) Collecting urllib3<1.27,>=1.21.1 Using cached urllib3-1.26.12-py2.py3-none-any.whl (140 kB) Collecting certifi>=2017.4.17 Using cached certifi-2022.9.24-py3-none-any.whl (161 kB) Collecting jmespath<1.0.0,>=0.7.1 Using cached jmespath-0.10.0-py2.py3-none-any.whl (24 kB) Collecting s3transfer<0.5.0,>=0.4.0 Using cached s3transfer-0.4.2-py2.py3-none-any.whl (79 kB) Collecting botocore<1.21.0,>=1.20.67 Using cached botocore-1.20.112-py2.py3-none-any.whl (7.7 MB) Collecting rdflib Using cached rdflib-6.2.0-py3-none-any.whl (500 kB) Collecting networkx Using cached networkx-2.8.8-py3-none-any.whl (2.0 MB) Collecting python-dateutil<3.0.0,>=2.1 Using cached python_dateutil-2.8.2-py2.py3-none-any.whl (247 kB) Collecting pyparsing Using cached pyparsing-3.0.9-py3-none-any.whl (98 kB) Collecting isodate Using cached isodate-0.6.1-py2.py3-none-any.whl (41 kB) Requirement already satisfied: setuptools in /home/cmiss/Jenkins/shiningpanda/jobs/5a3744f0/virtualenvs/d41d8cd9/lib/python3.8/site-packages (from rdflib->mapknowledge@ https://github.com/AnatomicMaps/map-knowledge/releases/download/v0.9.9/mapknowledge-0.9.9-py3-none-any.whl->-r requirements.txt (line 4)) (65.6.0) Collecting six>=1.5 Using cached six-1.16.0-py2.py3-none-any.whl (11 kB) Installing collected packages: urllib3, six, pyparsing, networkx, jmespath, idna, charset-normalizer, certifi, requests, python-dateutil, isodate, rdflib, botocore, algoliasearch, s3transfer, mapknowledge, boto3 Successfully installed algoliasearch-2.6.2 boto3-1.17.67 botocore-1.20.112 certifi-2022.9.24 charset-normalizer-2.0.12 idna-3.4 isodate-0.6.1 jmespath-0.10.0 mapknowledge-0.9.9 networkx-2.8.8 pyparsing-3.0.9 python-dateutil-2.8.2 rdflib-6.2.0 requests-2.27.1 s3transfer-0.4.2 six-1.16.0 urllib3-1.26.12 + python -m unittest tests/nightly_tests/test_connectivity.py Traceback (most recent call last): File "/usr/lib/python3.8/runpy.py", line 194, in _run_module_as_main return _run_code(code, main_globals, None, File "/usr/lib/python3.8/runpy.py", line 87, in _run_code exec(code, run_globals) File "/usr/lib/python3.8/unittest/__main__.py", line 18, in main(module=None) File "/usr/lib/python3.8/unittest/main.py", line 100, in __init__ self.parseArgs(argv) File "/usr/lib/python3.8/unittest/main.py", line 147, in parseArgs self.createTests() File "/usr/lib/python3.8/unittest/main.py", line 158, in createTests self.test = self.testLoader.loadTestsFromNames(self.testNames, File "/usr/lib/python3.8/unittest/loader.py", line 220, in loadTestsFromNames suites = [self.loadTestsFromName(name, module) for name in names] File "/usr/lib/python3.8/unittest/loader.py", line 220, in suites = [self.loadTestsFromName(name, module) for name in names] File "/usr/lib/python3.8/unittest/loader.py", line 154, in loadTestsFromName module = __import__(module_name) File "/home/cmiss/Jenkins/workspace/SCKAN Connectivity/tests/nightly_tests/test_connectivity.py", line 16, in from tests.config import Config File "/home/cmiss/Jenkins/workspace/SCKAN Connectivity/tests/config.py", line 4, in class Config(object): File "/home/cmiss/Jenkins/workspace/SCKAN Connectivity/tests/config.py", line 8, in Config SCICRUNCH_API_HOST = os.environ['SCICRUNCH_API_HOST'] File "/home/cmiss/Jenkins/shiningpanda/jobs/5a3744f0/virtualenvs/d41d8cd9/lib/python3.8/os.py", line 675, in __getitem__ raise KeyError(key) from None KeyError: 'SCICRUNCH_API_HOST' Build step 'Virtualenv Builder' marked build as failure Finished: FAILURE