<!doctype html> <html lang="en" style="height: 100%;"> <head> <meta charset="utf-8"> <meta http-equiv="x-ua-compatible" content="ie=edge"> <meta name="viewport" content="width=device-width, initial-scale=1"> <!-- <title></title> --> <link rel="stylesheet" href="/theme/css/foundation.min.css">> <link rel="icon" href="/images/favicon.png">> <link rel="stylesheet" href="/theme/css/foundation-icons/foundation-icons.css" /> <link href="https://fonts.googleapis.com/css?family=Roboto:400,400i" rel="stylesheet" /> <!--<link href="https://fonts.googleapis.com/css?family=Montserrat" rel="stylesheet">--> <!--<link href="https://fonts.googleapis.com/css?family=Roboto+Slab" rel="stylesheet">--> <link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/4.7.0/css/font-awesome.min.css"> <style> .sidebar { height: 100%; /* Full-height: do not remove */ width: 190px; /* Set the width of the sidebar */ position: fixed; /* Fixed Sidebar (stay in place on scroll) */ z-index: 1; /* Stay on top */ top: 0; /* Stay at the top */ left: 0; background-color: black; overflow-x: hidden; /* Disable horizontal scroll */ padding-top: 20px; } .sidebar a:hover, .dropdown:hover .dropdown-btn { color: #f1f1f1; } .dropdown { float: left; overflow: hidden; padding-bottom: 10px; padding-right: 10px; } .dropbtn { background-color; color: #ccb2d6; padding: 6px 8px 6px 16px; font-size: 20px; width:100%; text-align: left; border: none; cursor: pointer; } .dropbtn_bottom { background-color; color: #ccb2d6; padding: 6px 8px 6px 16px; font-size: 20px; width:100%; text-align: left; position: absolute; display: inline-block; bottom: 0; border: none; cursor: pointer; padding-bottom: 30px; } .sidebar a { /* , .dropdown-btn */ padding: 6px 8px 6px 16px; text-decoration: none; font-size: 20px; color: #ccb2d6; display: block; border: none; background: none; width:100%; text-align: left; cursor: pointer; outline: none; } .dropdown-container { display: none; background-color: #262626; padding-left: 12px; } .dropdown-container a { font-size: 16px; } .show {display: block;} /*.dropdown:hover .dropdown-container { display: block; }*/ .main { margin-left: 190px; /* Same as the width of the sidenav */ padding: 0px 10px; } @media screen and (max-height: 450px) { .sidebar {padding-top: 15px;} .sidebar a {font-size: 18px;} } </style> </head> <body style="height: 100%; display: flex; flex-direction: column"> <!-- Top navigation bar --> <div class="row"> <div class="small-12 columns"></div> </div> <div style="background-color: white;"> <div class="row"> <div a href="/"><img src="/theme/images/Physiome-beside-middle.png" alt="Physiome logo" style="width:100%;height:100%; padding: 1px 1px 0px 250px;"></a> <span style="margin-left:10px"></span> </div> <div class="small-4 column" style="text-align:right"> </div> </div> </div> <!-- <div style="background-color: white;"> <div class="row"> <div class="small-11 column"><a href="/"><img src="/theme/images/Physiome-beside-middle.png" alt="Physiome logo" style="width:100%;height:100%; padding: 1px 1px 1px 320px;"></a><span style="margin-left:10px"></span></div> <div class="small-4 column" style="text-align:right"> </div> </div> </div> --> <div class="sidebar"> <a href="/">Home</a> <hr style="background-color: #ccb2d6;height: 3.0px;border: none"> <div class="dropdown"> <button onclick="function_showdropdown_about()" class="dropbtn">About the Journal <i class="fa fa-caret-down"></i></button> <!-- <a href="/about.html" class="dropdown-btn"> About the Journal <i class="fa fa-caret-down"></i></a> --> <div id="myDropdown-about" class="dropdown-container"> <a href="/about.html#scope"> Scope</a> <a href="/about.html#philosophy"> <i>Physiome</i> Philosophy</a> <a href="/about.html#definitions"> Definitions</a> </div> </div> <hr style="background-color: #ccb2d6;height: 3.0px;border: none"> <div class="dropdown"> <button onclick="function_showdropdown_authors()" class="dropbtn">For Authors <i class="fa fa-caret-down"></i></button> <!-- <a href="/instructions-to-authors.html" class="dropdown-btn"> For Authors <i class="fa fa-caret-down"></i></a> --> <div id="myDropdown-authors" class="dropdown-container"> <a href="/instructions-to-authors.html#instructions"> Instructions</a> <a href="/instructions-to-authors.html#types"> Types of submissions</a> <a href="/instructions-to-authors.html#preparing"> Preparing your submission</a> <a href="/instructions-to-authors.html#submission"> Submission</a> <a href="/instructions-to-authors.html#curation"> Curation</a> <a href="/instructions-to-authors.html#publishing"> Publishing</a> <a href="/instructions-to-authors.html#copyright"> Copyright</a> </div> </div> <hr style="background-color: #ccb2d6;height: 3.0px;border: none"> <a href="/articles/">Published Articles</a> <hr style="background-color: #ccb2d6;height: 3.0px;border: none"> <a href="/editorial-board.html"> Editorial Board</a> <hr style="background-color: #ccb2d6;height: 3.0px;border: none"> <a href="/physiome-project.html"> The Physiome Project</a> <hr style="background-color: #ccb2d6;height: 3.0px;border: none"> <a href="/faqs.html">Frequently Asked Questions</a> <hr style="background-color: #ccb2d6;height: 3.0px;border: none"> <a href="mailto:physiome@physiomeproject.org">EMAIL US</a> <hr style="background-color: #ccb2d6;height: 3.0px;border: none"> <!-- <a href="/contact-us.html">Contact us</a> --> <!-- <a href="/contact-us.html"><button class="dropbtn_bottom">Contact us</button></a> --> <!-- <a href = "mailto:physiome@physiomeproject.org"><button class="dropbtn_bottom">Email us</button></a> --> </div> <!-- Body --> <div class="main" style="margin-top:20px; flex: 1 0 auto"> <div class="row"> <head> <title>Reproducibility Study for a Computational Model of the Neurovascular Coupling Unit</title> <style> /* Header/Logo Title */ .header {font-size: 0.8em;} /* Page Content */ .content {} </style> </head> <div class="header"> <div style='float: left;'> Open Access<br> Reproducible Model<br> Original Article </div> <div style='float: right; text-align: right'> <p>Published: 2023-01-11<br> Last edited: 2023-01-11</p> </div> </div> <br> <br> <br> <h3>Reproducibility Study for a Computational Model of the Neurovascular Coupling Unit</h3> <p style='font-size: 1.2em;'> <i> Dempsey, S. <a href="https://orcid.org/0000-0003-1738-3047"><img class="b" alt="ORCID logo" src="https://orcid.org/sites/default/files/images/orcid_16x16.png" width="16" height="16" /></a> , Cedersund, G. <a href="https://orcid.org/0000-0001-9386-0568"><img class="b" alt="ORCID logo" src="https://orcid.org/sites/default/files/images/orcid_16x16.png" width="16" height="16" /></a> , Engström, M. <a href="https://orcid.org/0000-0002-7221-3430"><img class="b" alt="ORCID logo" src="https://orcid.org/sites/default/files/images/orcid_16x16.png" width="16" height="16" /></a> , Talou, G. M. <a href="https://orcid.org/0000-0002-5208-992X"><img class="b" alt="ORCID logo" src="https://orcid.org/sites/default/files/images/orcid_16x16.png" width="16" height="16" /></a> , Safaei, S. <a href="https://orcid.org/0000-0001-5734-243X"><img class="b" alt="ORCID logo" src="https://orcid.org/sites/default/files/images/orcid_16x16.png" width="16" height="16" /></a> </i> </p> <table style="background-color:#E0E0E0;"> <tr style="background-color:#E0E0E0;"> <td> <style> .button { border: 1px solid #580078; background-color: #580078; color: white; padding: 15px 25px; text-align: center; font-size: 16px; vertical-align: middle; cursor: pointer; margin-bottom: 0; width: 13em; height: 100% } .article-icon { max-height: 1.7em; } </style> <a href="https://doi.org/10.36903/physiome.21714863" target="_blank" rel="noopener noreferrer" class="button" > <img class="article-icon" src="/theme/images/Physiome-under.png"> View publication </a> </td> <td> <p> <b>To cite this <i>Physiome</i> article, cite the whole collection at the DOI: <a style="color:#580078" href="https://doi.org/10.36903/physiome.21714863" target="_blank" rel="noopener noreferrer">10.36903/physiome.21714863</a>, and the Primary Publication at the DOI: <a style="color:#580078" href="https://doi.org/10.1016/j.neuroimage.2020.116827" target="_blank" rel="noopener noreferrer">https://doi.org/10.1016/j.neuroimage.2020.116827</a>.</b> </p> <p> All <i>Physiome</i> articles are published as a collection containing the manuscript as a PDF file and the model implementation as an <a style="color:#580078" href="/faqs.html#omex">OMEX file</a>. </p> </td> </tr> </table> <br> <b>Primary Publication:</b> <a style="color:#580078" href="https://doi.org/10.1016/j.neuroimage.2020.116827" target="_blank" rel="noopener noreferrer">A quantitative analysis of cell-specific contributions and the role of anesthetics to the neurovascular coupling. 2020</a> <br> <br> <p> <b>Abstract:</b> The mechanistic model of neurovascular coupling was developed and studied by Sten et al. (2020). This model describes and predicts the arteriolar dilation data of mice under various stimulations while anaesthetised and awake. We reconstructed the model in CellML, using a modular approach for each neuronal pathway, and successfully reproduced the original experiments (see the figures in this article and Sten et al. (2020)). With the success of the result reproduction, the CellML model can now be injected into other OpenCOR workflows to obtain a mechanistic hemodynamic response function of neurovascular coupling arteriolar dilation.</p> <br> <span><Message><i>Is there something wrong with this publication? </i><a href="mailto:physiome-curators@physiomeproject.org?subject=Query about article 10.36903/physiome.21714863"><i>Contact our curators</i></a>.</Message></span> <br> <br> </div> </div> <script type="text/javascript" src="/theme/js/jquery.js"></script> <script type="text/javascript" src="/theme/js/what-input.js"></script> <script type="text/javascript" src="/theme/js/foundation.min.js"></script> <script> /* When the user clicks on the button, toggle between hiding and showing the dropdown content */ function function_showdropdown_about() { document.getElementById("myDropdown-about").classList.toggle("show"); } function function_showdropdown_authors() { document.getElementById("myDropdown-authors").classList.toggle("show"); } // Close the dropdown if the user clicks outside of it window.onclick = function(event) { if (!event.target.matches('.dropbtn')) { var dropdowns = document.getElementsByClassName("dropdown-container"); var i; for (i = 0; i < dropdowns.length; i++) { var openDropdown = dropdowns[i]; if (openDropdown.classList.contains('show')) { openDropdown.classList.remove('show'); } } } } </script> </body> <!-- Footer with contact info --> <style> footer { flex-shrink: 0; background-color: black; color: white; text-align: center; } </style> <footer> <!-- <span style="display: block; color: white">Contact us: <a style="color:white; text-decoration: underline;" href="mailto:physiome@physiomeproject.org">physiome@physiomeproject.org</a></span> --> <!-- <span style="display: block; color: white">Meet our <a style="color:white; text-decoration: underline" href="/editorial-board.html">Editorial Board</a></span> --> <span style="display: block; colour: white; margin-left:190px">Supported by</span> <p><a href="http://www.iups.org/"><img src="/theme/images/IUPS_white.png" alt="Physiome logo" style="width:7%;height:7%;"></a> <a href="https://www.vph-institute.org/"><img src="/theme/images/Horizonal_Online.png" alt="VPH logo" style="width:13%;height:13%;"></a> <a href="https://www.auckland.ac.nz/en/abi.html"><img src="/theme/images/abi-hc-rgb-white.png" alt="ABI logo" style="width:30%;height:30%;"></a> <a href="https://www.digital-science.com/"><img src="/theme/images/ds-logo-bw.png" alt="Digital Science logo" style="width:15%;height:15%;"></a></p> </footer> <script> (function(i,s,o,g,r,a,m){i['GoogleAnalyticsObject']=r;i[r]=i[r]||function(){ (i[r].q=i[r].q||[]).push(arguments)},i[r].l=1*new Date();a=s.createElement(o), m=s.getElementsByTagName(o)[0];a.async=1;a.src=g;m.parentNode.insertBefore(a,m) })(window,document,'script','https://www.google-analytics.com/analytics.js','ga'); ga('create', 'UA-200859312-1', 'auto'); ga('send', 'pageview'); </script> </html>