<!doctype html> <html lang="en" style="height: 100%;"> <head> <meta charset="utf-8"> <meta http-equiv="x-ua-compatible" content="ie=edge"> <meta name="viewport" content="width=device-width, initial-scale=1"> <!-- <title></title> --> <link rel="stylesheet" href="/theme/css/foundation.min.css">> <link rel="icon" href="/images/favicon.png">> <link rel="stylesheet" href="/theme/css/foundation-icons/foundation-icons.css" /> <link href="https://fonts.googleapis.com/css?family=Roboto:400,400i" rel="stylesheet" /> <!--<link href="https://fonts.googleapis.com/css?family=Montserrat" rel="stylesheet">--> <!--<link href="https://fonts.googleapis.com/css?family=Roboto+Slab" rel="stylesheet">--> <link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/4.7.0/css/font-awesome.min.css"> <style> .sidebar { height: 100%; /* Full-height: do not remove */ width: 190px; /* Set the width of the sidebar */ position: fixed; /* Fixed Sidebar (stay in place on scroll) */ z-index: 1; /* Stay on top */ top: 0; /* Stay at the top */ left: 0; background-color: black; overflow-x: hidden; /* Disable horizontal scroll */ padding-top: 20px; } .sidebar a:hover, .dropdown:hover .dropdown-btn { color: #f1f1f1; } .dropdown { float: left; overflow: hidden; padding-bottom: 10px; padding-right: 10px; } .dropbtn { background-color; color: #ccb2d6; padding: 6px 8px 6px 16px; font-size: 20px; width:100%; text-align: left; border: none; cursor: pointer; } .dropbtn_bottom { background-color; color: #ccb2d6; padding: 6px 8px 6px 16px; font-size: 20px; width:100%; text-align: left; position: absolute; display: inline-block; bottom: 0; border: none; cursor: pointer; padding-bottom: 30px; } .sidebar a { /* , .dropdown-btn */ padding: 6px 8px 6px 16px; text-decoration: none; font-size: 20px; color: #ccb2d6; display: block; border: none; background: none; width:100%; text-align: left; cursor: pointer; outline: none; } .dropdown-container { display: none; background-color: #262626; padding-left: 12px; } .dropdown-container a { font-size: 16px; } .show {display: block;} /*.dropdown:hover .dropdown-container { display: block; }*/ .main { margin-left: 190px; /* Same as the width of the sidenav */ padding: 0px 10px; } @media screen and (max-height: 450px) { .sidebar {padding-top: 15px;} .sidebar a {font-size: 18px;} } </style> </head> <body style="height: 100%; display: flex; flex-direction: column"> <!-- Top navigation bar --> <div class="row"> <div class="small-12 columns"></div> </div> <div style="background-color: white;"> <div class="row"> <div a href="/"><img src="/theme/images/Physiome-beside-middle.png" alt="Physiome logo" style="width:100%;height:100%; padding: 1px 1px 0px 250px;"></a> <span style="margin-left:10px"></span> </div> <div class="small-4 column" style="text-align:right"> </div> </div> </div> <!-- <div style="background-color: white;"> <div class="row"> <div class="small-11 column"><a href="/"><img src="/theme/images/Physiome-beside-middle.png" alt="Physiome logo" style="width:100%;height:100%; padding: 1px 1px 1px 320px;"></a><span style="margin-left:10px"></span></div> <div class="small-4 column" style="text-align:right"> </div> </div> </div> --> <div class="sidebar"> <a href="/">Home</a> <hr style="background-color: #ccb2d6;height: 3.0px;border: none"> <div class="dropdown"> <button onclick="function_showdropdown_about()" class="dropbtn">About the Journal <i class="fa fa-caret-down"></i></button> <!-- <a href="/about.html" class="dropdown-btn"> About the Journal <i class="fa fa-caret-down"></i></a> --> <div id="myDropdown-about" class="dropdown-container"> <a href="/about.html#scope"> Scope</a> <a href="/about.html#philosophy"> <i>Physiome</i> Philosophy</a> <a href="/about.html#definitions"> Definitions</a> </div> </div> <hr style="background-color: #ccb2d6;height: 3.0px;border: none"> <div class="dropdown"> <button onclick="function_showdropdown_authors()" class="dropbtn">For Authors <i class="fa fa-caret-down"></i></button> <!-- <a href="/instructions-to-authors.html" class="dropdown-btn"> For Authors <i class="fa fa-caret-down"></i></a> --> <div id="myDropdown-authors" class="dropdown-container"> <a href="/instructions-to-authors.html#instructions"> Instructions</a> <a href="/instructions-to-authors.html#types"> Types of submissions</a> <a href="/instructions-to-authors.html#preparing"> Preparing your submission</a> <a href="/instructions-to-authors.html#submission"> Submission</a> <a href="/instructions-to-authors.html#curation"> Curation</a> <a href="/instructions-to-authors.html#publishing"> Publishing</a> <a href="/instructions-to-authors.html#copyright"> Copyright</a> </div> </div> <hr style="background-color: #ccb2d6;height: 3.0px;border: none"> <a href="/articles/">Published Articles</a> <hr style="background-color: #ccb2d6;height: 3.0px;border: none"> <a href="/editorial-board.html"> Editorial Board</a> <hr style="background-color: #ccb2d6;height: 3.0px;border: none"> <a href="/physiome-project.html"> The Physiome Project</a> <hr style="background-color: #ccb2d6;height: 3.0px;border: none"> <a href="/faqs.html">Frequently Asked Questions</a> <hr style="background-color: #ccb2d6;height: 3.0px;border: none"> <a href="mailto:physiome@physiomeproject.org">EMAIL US</a> <hr style="background-color: #ccb2d6;height: 3.0px;border: none"> <!-- <a href="/contact-us.html">Contact us</a> --> <!-- <a href="/contact-us.html"><button class="dropbtn_bottom">Contact us</button></a> --> <!-- <a href = "mailto:physiome@physiomeproject.org"><button class="dropbtn_bottom">Email us</button></a> --> </div> <!-- Body --> <div class="main" style="margin-top:20px; flex: 1 0 auto"> <div class="row"> <head> <title>Reproducibility Study of Computational Modelling of Glucose Uptake by SGLT1 and GLUT2 in the Enterocyte</title> <style> /* Header/Logo Title */ .header {font-size: 0.8em;} /* Page Content */ .content {} </style> </head> <div class="header"> <div style='float: left;'> Open Access<br> Reproducible Model<br> Original Article </div> <div style='float: right; text-align: right'> <p>Published: 2023-01-19<br> Last edited: 2023-01-19</p> </div> </div> <br> <br> <br> <h3>Reproducibility Study of Computational Modelling of Glucose Uptake by SGLT1 and GLUT2 in the Enterocyte</h3> <p style='font-size: 1.2em;'> <i> Afshar, N. <a href="https://orcid.org/0000-0002-6671-6920"><img class="b" alt="ORCID logo" src="https://orcid.org/sites/default/files/images/orcid_16x16.png" width="16" height="16" /></a> , Safaei, S. <a href="https://orcid.org/0000-0001-5734-243X"><img class="b" alt="ORCID logo" src="https://orcid.org/sites/default/files/images/orcid_16x16.png" width="16" height="16" /></a> , Nickerson, D. P. <a href="https://orcid.org/0000-0003-4667-9779"><img class="b" alt="ORCID logo" src="https://orcid.org/sites/default/files/images/orcid_16x16.png" width="16" height="16" /></a> , Hunter, P. J. <a href="https://orcid.org/0000-0001-9665-4145"><img class="b" alt="ORCID logo" src="https://orcid.org/sites/default/files/images/orcid_16x16.png" width="16" height="16" /></a> , Suresh, V. <a href="https://orcid.org/0000-0002-7198-1446"><img class="b" alt="ORCID logo" src="https://orcid.org/sites/default/files/images/orcid_16x16.png" width="16" height="16" /></a> </i> </p> <table style="background-color:#E0E0E0;"> <tr style="background-color:#E0E0E0;"> <td> <style> .button { border: 1px solid #580078; background-color: #580078; color: white; padding: 15px 25px; text-align: center; font-size: 16px; vertical-align: middle; cursor: pointer; margin-bottom: 0; width: 13em; height: 100% } .article-icon { max-height: 1.7em; } </style> <a href="https://doi.org/10.36903/physiome.21708179" target="_blank" rel="noopener noreferrer" class="button" > <img class="article-icon" src="/theme/images/Physiome-under.png"> View publication </a> </td> <td> <p> <b>To cite this <i>Physiome</i> article, cite the whole collection at the DOI: <a style="color:#580078" href="https://doi.org/10.36903/physiome.21708179" target="_blank" rel="noopener noreferrer">10.36903/physiome.21708179</a>, and the Primary Publication at the DOI: <a style="color:#580078" href="https://doi.org/10.3389/fphys.2021.699152" target="_blank" rel="noopener noreferrer">https://doi.org/10.3389/fphys.2021.699152</a>.</b> </p> <p> All <i>Physiome</i> articles are published as a collection containing the manuscript as a PDF file and the model implementation as an <a style="color:#580078" href="/faqs.html#omex">OMEX file</a>. </p> </td> </tr> </table> <br> <b>Primary Publication:</b> <a style="color:#580078" href="https://doi.org/10.3389/fphys.2021.699152" target="_blank" rel="noopener noreferrer">Computational Modelling of Glucose Uptake by SGLT1 and Apical GLUT2 in the Enterocyte. 2021</a> <br> <br> <p> <b>Abstract:</b> Many researchers in the last couple of decades have suggested that glucose absorption in the small intestine depends on both constitutively expressed SGLT1 and translocated GLUT2 in the brush border membrane, especially in the presence of a high concentration of luminal glucose. Afshar et al. generated a computational model of non-isotonic glucose uptake by small intestinal epithelial cells. The model incorporates apical uptake via SGLT1 and GLUT2, basolateral efflux into the blood via GLUT2 and cellular volume changes in response to non-isotonic conditions. The dependence of glucose absorption on luminal glucose, blood flow rate, and inlet blood glucose concentration is studied, and the results explain more about the role of apical GLUT2 in intestinal cell glucose absorption. Here, we used the CellML file provided by the model authors, together with SED-ML files and Python scripts, to demonstrate the reproduction of the figures in the original paper by using the associated model.</p> <br> <span><Message><i>Is there something wrong with this publication? </i><a href="mailto:physiome-curators@physiomeproject.org?subject=Query about article 10.36903/physiome.21708179"><i>Contact our curators</i></a>.</Message></span> <br> <br> </div> </div> <script type="text/javascript" src="/theme/js/jquery.js"></script> <script type="text/javascript" src="/theme/js/what-input.js"></script> <script type="text/javascript" src="/theme/js/foundation.min.js"></script> <script> /* When the user clicks on the button, toggle between hiding and showing the dropdown content */ function function_showdropdown_about() { document.getElementById("myDropdown-about").classList.toggle("show"); } function function_showdropdown_authors() { document.getElementById("myDropdown-authors").classList.toggle("show"); } // Close the dropdown if the user clicks outside of it window.onclick = function(event) { if (!event.target.matches('.dropbtn')) { var dropdowns = document.getElementsByClassName("dropdown-container"); var i; for (i = 0; i < dropdowns.length; i++) { var openDropdown = dropdowns[i]; if (openDropdown.classList.contains('show')) { openDropdown.classList.remove('show'); } } } } </script> </body> <!-- Footer with contact info --> <style> footer { flex-shrink: 0; background-color: black; color: white; text-align: center; } </style> <footer> <!-- <span style="display: block; color: white">Contact us: <a style="color:white; text-decoration: underline;" href="mailto:physiome@physiomeproject.org">physiome@physiomeproject.org</a></span> --> <!-- <span style="display: block; color: white">Meet our <a style="color:white; text-decoration: underline" href="/editorial-board.html">Editorial Board</a></span> --> <span style="display: block; colour: white; margin-left:190px">Supported by</span> <p><a href="http://www.iups.org/"><img src="/theme/images/IUPS_white.png" alt="Physiome logo" style="width:7%;height:7%;"></a> <a href="https://www.vph-institute.org/"><img src="/theme/images/Horizonal_Online.png" alt="VPH logo" style="width:13%;height:13%;"></a> <a href="https://www.auckland.ac.nz/en/abi.html"><img src="/theme/images/abi-hc-rgb-white.png" alt="ABI logo" style="width:30%;height:30%;"></a> <a href="https://www.digital-science.com/"><img src="/theme/images/ds-logo-bw.png" alt="Digital Science logo" style="width:15%;height:15%;"></a></p> </footer> <script> (function(i,s,o,g,r,a,m){i['GoogleAnalyticsObject']=r;i[r]=i[r]||function(){ (i[r].q=i[r].q||[]).push(arguments)},i[r].l=1*new Date();a=s.createElement(o), m=s.getElementsByTagName(o)[0];a.async=1;a.src=g;m.parentNode.insertBefore(a,m) })(window,document,'script','https://www.google-analytics.com/analytics.js','ga'); ga('create', 'UA-200859312-1', 'auto'); ga('send', 'pageview'); </script> </html>