Reproducible Model
Original Article
Published: 2021-09-23
Last edited: 2021-09-23
A kinetic model of beta-adrenergic control in cardiac myocytes
Fong, S.
,
Saucerman, J. J.
 View publication
|
To cite this Physiome article, cite the whole collection at the DOI: 10.36903/physiome.16664248, and the Primary Publication at the DOI: https://doi.org/10.1074/jbc.m308362200. All Physiome articles are published as a collection containing the manuscript as a PDF file and the model implementation as an OMEX file. |
Primary Publication: Modeling β-Adrenergic Control of Cardiac Myocyte Contractility in Silico *. 2003, J.J. Saucerman, L.L. Brunton, A.P. Michailova, A.D. McCulloch
Abstract: The system of equations and figures presented in Saucerman et al. (2003) are verified and reproduced in this paper's curation effort. These checks are performed in MATLAB. With some parameter additions and modifications, we can reproduce all figures with small mismatches.
References:
1. Modeling $\beta$-adrenergic control of cardiac myocyte contractility in silico. Journal: Journal of Biological Chemistry. Saucerman, Jeffrey J and Brunton, Laurence L and Michailova, Anushka P and McCulloch, Andrew D. Volume: 278. Year: 2003.
2. Cardiac Ca2+ dynamics: the roles of ryanodine receptor adaptation and sarcoplasmic reticulum load. Journal: Biophysical journal. Jafri, M Saleet and Rice, J Jeremy and Winslow, Raimond L. Volume: 74. Year: 1998.
3. Excitation-contraction coupling and cardiac contractile force. Bers, Donald. Volume: 237. Year: 2001.
4. Density of fat and bone mineral of the mammalian body.. Journal: Metabolism. Mendez, J and Keys, A and Anderson, JT and Grande, F and others. Volume: 9. Year: 1960.
5. An Overview of CellML 1.1, a Biological Model Description Language. Journal: SIMULATION. Autumn A. Cuellar and Catherine M. Lloyd and Poul F. Nielsen and David P. Bullivant and David P. Nickerson and Peter J. Hunter. Volume: 79. Year: 2003.
6. MATLAB version 9.3.0713579 (R2017b). Year: 2017.
7. The matlab ode suite. Journal: SIAM journal on scientific computing. Shampine, Lawrence F and Reichelt, Mark W. Volume: 18. Year: 1997.
8. The FAIR Guiding Principles for scientific data management and stewardship. Journal: Scientific data. Wilkinson, Mark D and Dumontier, Michel and Aalbersberg, IJsbrand Jan and Appleton, Gabrielle and Axton, Myles and Baak, Arie and Blomberg, Niklas and Boiten, Jan-Willem and da Silva Santos, Luiz Bonino and Bourne, Philip E and others. Volume: 3. Year: 2016.