Started by GitHub push by s-fong Started by user Alan Wu Rebuilds build #150 Running as SYSTEM Building remotely on Ubuntu_18.04_bioeng49 (buildslave Testing) in workspace /home/cmiss/Jenkins/workspace/PhysiomeJournalDevelopmentSite The recommended git tool is: NONE No credentials specified Wiping out workspace first. Cloning the remote Git repository Cloning repository https://github.com/Physiome/journal-website > git init /home/cmiss/Jenkins/workspace/PhysiomeJournalDevelopmentSite # timeout=10 Fetching upstream changes from https://github.com/Physiome/journal-website > git --version # timeout=10 > git --version # 'git version 2.17.1' > git fetch --tags --progress -- https://github.com/Physiome/journal-website +refs/heads/*:refs/remotes/origin/* # timeout=10 > git config remote.origin.url https://github.com/Physiome/journal-website # timeout=10 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10 Avoid second fetch > git rev-parse refs/remotes/origin/journaldev^{commit} # timeout=10 Checking out Revision 337ead1dbcfb341f0072410772cda881e48835c9 (refs/remotes/origin/journaldev) > git config core.sparsecheckout # timeout=10 > git checkout -f 337ead1dbcfb341f0072410772cda881e48835c9 # timeout=10 Commit message: "Merge pull request #171 from Physiome/nickerso-patch-1" > git rev-list --no-walk 337ead1dbcfb341f0072410772cda881e48835c9 # timeout=10 [Set GitHub commit status (universal)] PENDING on repos [] (sha:337ead1) with context:journaldev-build [PhysiomeJournalDevelopmentSite] $ /usr/bin/python3.7 /home/cmiss/Jenkins/shiningpanda/jobs/888df718/virtualenv.py /home/cmiss/Jenkins/shiningpanda/jobs/888df718/virtualenvs/d41d8cd9 Using base prefix '/usr' New python executable in /home/cmiss/Jenkins/shiningpanda/jobs/888df718/virtualenvs/d41d8cd9/bin/python3.7 Also creating executable in /home/cmiss/Jenkins/shiningpanda/jobs/888df718/virtualenvs/d41d8cd9/bin/python Installing setuptools, pip, wheel...done. /home/cmiss/Jenkins/shiningpanda/jobs/888df718/virtualenv.py:1041: DeprecationWarning: the imp module is deprecated in favour of importlib; see the module's documentation for alternative uses import imp [PhysiomeJournalDevelopmentSite] $ /bin/sh -xe /tmp/shiningpanda2637278270431586075.sh + make deps pip install -r py-requirements.txt Collecting pelican>3.6 Using cached pelican-4.7.2-py3-none-any.whl (1.4 MB) Collecting markdown Using cached Markdown-3.3.6-py3-none-any.whl (97 kB) Collecting unidecode>=1.1 Using cached Unidecode-1.3.4-py3-none-any.whl (235 kB) Collecting python-dateutil>=2.8 Using cached python_dateutil-2.8.2-py2.py3-none-any.whl (247 kB) Collecting feedgenerator>=1.9 Using cached feedgenerator-2.0.0-py3-none-any.whl (21 kB) Collecting rich>=10.1 Using cached rich-12.0.1-py3-none-any.whl (224 kB) Collecting docutils>=0.16 Using cached docutils-0.18.1-py2.py3-none-any.whl (570 kB) Collecting jinja2>=2.7 Using cached Jinja2-3.1.0-py3-none-any.whl (132 kB) Collecting pygments>=2.6 Using cached Pygments-2.11.2-py3-none-any.whl (1.1 MB) Collecting pytz>=2020.1 Using cached pytz-2022.1-py2.py3-none-any.whl (503 kB) Collecting blinker>=1.4 Using cached blinker-1.4-py3-none-any.whl Collecting importlib-metadata>=4.4 Using cached importlib_metadata-4.11.3-py3-none-any.whl (18 kB) Collecting typing-extensions>=3.6.4 Using cached typing_extensions-4.1.1-py3-none-any.whl (26 kB) Collecting zipp>=0.5 Using cached zipp-3.7.0-py3-none-any.whl (5.3 kB) Collecting MarkupSafe>=2.0 Using cached MarkupSafe-2.1.1-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (25 kB) Collecting six>=1.5 Using cached six-1.16.0-py2.py3-none-any.whl (11 kB) Collecting commonmark<0.10.0,>=0.9.0 Using cached commonmark-0.9.1-py2.py3-none-any.whl (51 kB) Installing collected packages: pytz, commonmark, blinker, zipp, unidecode, typing-extensions, six, pygments, MarkupSafe, feedgenerator, docutils, rich, python-dateutil, jinja2, importlib-metadata, pelican, markdown Successfully installed MarkupSafe-2.1.1 blinker-1.4 commonmark-0.9.1 docutils-0.18.1 feedgenerator-2.0.0 importlib-metadata-4.11.3 jinja2-3.1.0 markdown-3.3.6 pelican-4.7.2 pygments-2.11.2 python-dateutil-2.8.2 pytz-2022.1 rich-12.0.1 six-1.16.0 typing-extensions-4.1.1 unidecode-1.3.4 zipp-3.7.0 + make html pelican /home/cmiss/Jenkins/workspace/PhysiomeJournalDevelopmentSite/content -o /home/cmiss/Jenkins/workspace/PhysiomeJournalDevelopmentSite/output -s /home/cmiss/Jenkins/workspace/PhysiomeJournalDevelopmentSite/pelicanconf.py Done: Processed 12 articles, 0 drafts, 0 hidden articles, 9 pages, 0 hidden pages and 0 draft pages in 0.38 seconds. + scp -v -2 -r -o GlobalKnownHostsFile=**** -i **** output/about.html output/archive-descriptions output/archives.html output/article-prototypes.html output/articles output/author output/authors.html output/categories.html output/contact-us.html output/data output/editorial-board.html output/faqs.html output/index.html output/instructions-to-authors.html output/models output/pdfs output/physiome-project.html output/pmr.html output/tags.html output/testing.html output/theme pj-site@abiwebsrv02.bioeng.auckland.ac.nz:/home/pj-site/journaldev.physiomeproject.org/ Executing: program /usr/bin/ssh host abiwebsrv02.bioeng.auckland.ac.nz, user pj-site, command scp -v -r -d -t /home/pj-site/journaldev.physiomeproject.org/ OpenSSH_7.6p1 Ubuntu-4ubuntu0.5, OpenSSL 1.0.2n 7 Dec 2017 debug1: Reading configuration data /etc/ssh/ssh_config debug1: /etc/ssh/ssh_config line 19: Applying options for * debug1: Connecting to abiwebsrv02.bioeng.auckland.ac.nz [130.216.230.134] port 22. debug1: Connection established. debug1: key_load_public: No such file or directory debug1: identity file **** type -1 debug1: key_load_public: No such file or directory debug1: identity file ****-cert type -1 debug1: Local version string SSH-2.0-OpenSSH_7.6p1 Ubuntu-4ubuntu0.5 debug1: Remote protocol version 2.0, remote software version OpenSSH_8.2p1 Ubuntu-4ubuntu0.4 debug1: match: OpenSSH_8.2p1 Ubuntu-4ubuntu0.4 pat OpenSSH* compat 0x04000000 debug1: Authenticating to abiwebsrv02.bioeng.auckland.ac.nz:22 as 'pj-site' debug1: SSH2_MSG_KEXINIT sent debug1: SSH2_MSG_KEXINIT received debug1: kex: algorithm: curve25519-sha256 debug1: kex: host key algorithm: ecdsa-sha2-nistp256 debug1: kex: server->client cipher: chacha20-poly1305@openssh.com MAC: compression: none debug1: kex: client->server cipher: chacha20-poly1305@openssh.com MAC: compression: none debug1: expecting SSH2_MSG_KEX_ECDH_REPLY debug1: Server host key: ecdsa-sha2-nistp256 SHA256:nrl+uVNnKBIgl3yLEOD5DNhwRjwUUYwcQfwVtvox6as debug1: Host 'abiwebsrv02.bioeng.auckland.ac.nz' is known and matches the ECDSA host key. debug1: Found key in /home/cmiss/.ssh/known_hosts:9 debug1: rekey after 134217728 blocks debug1: SSH2_MSG_NEWKEYS sent debug1: expecting SSH2_MSG_NEWKEYS debug1: SSH2_MSG_NEWKEYS received debug1: rekey after 134217728 blocks debug1: SSH2_MSG_EXT_INFO received debug1: kex_input_ext_info: server-sig-algs= debug1: SSH2_MSG_SERVICE_ACCEPT received debug1: Authentications that can continue: publickey,password debug1: Next authentication method: publickey debug1: Trying private key: **** debug1: Authentication succeeded (publickey). Authenticated to abiwebsrv02.bioeng.auckland.ac.nz ([130.216.230.134]:22). debug1: channel 0: new [client-session] debug1: Requesting no-more-sessions@openssh.com debug1: Entering interactive session. debug1: pledge: network debug1: client_input_global_request: rtype hostkeys-00@openssh.com want_reply 0 debug1: Remote: /home/pj-site/.ssh/authorized_keys:1: key options: agent-forwarding port-forwarding pty user-rc x11-forwarding debug1: Sending environment. debug1: Sending env LANG = en_NZ.UTF-8 debug1: Sending command: scp -v -r -d -t /home/pj-site/journaldev.physiomeproject.org/ debug1: client_input_channel_req: channel 0 rtype exit-status reply 0 debug1: client_input_channel_req: channel 0 rtype eow@openssh.com reply 0 This account is currently not available. debug1: channel 0: free: client-session, nchannels 1 debug1: fd 0 clearing O_NONBLOCK debug1: fd 1 clearing O_NONBLOCK debug1: fd 2 clearing O_NONBLOCK Transferred: sent 2940, received 2920 bytes, in 1.3 seconds Bytes per second: sent 2282.4, received 2266.9 debug1: Exit status 1 Build step 'Virtualenv Builder' marked build as failure [Set GitHub commit status (universal)] ERROR on repos [] (sha:337ead1) with context:journaldev-build Finished: FAILURE