Started by GitHub push by KarinLundengard
Running as SYSTEM
Building remotely on <a href='/jenkins/computer/Ubuntu_16.04_bioeng49' class='jenkins-table__link model-link model-link--float'>Ubuntu_16.04_bioeng49</a> (buildslave Testing) in workspace /home/cmiss/Jenkins/workspace/PhysiomeJournalDevelopmentSite
No credentials specified
Wiping out workspace first.
Cloning the remote Git repository
Cloning repository <a href='https://github.com/Physiome/journal-website'>https://github.com/Physiome/journal-website</a>
 &gt; git init /home/cmiss/Jenkins/workspace/PhysiomeJournalDevelopmentSite # timeout=10
Fetching upstream changes from <a href='https://github.com/Physiome/journal-website'>https://github.com/Physiome/journal-website</a>
 &gt; git --version # timeout=10
 &gt; git fetch --tags --progress -- <a href='https://github.com/Physiome/journal-website'>https://github.com/Physiome/journal-website</a> +refs/heads/*:refs/remotes/origin/* # timeout=10
 &gt; git config remote.origin.url <a href='https://github.com/Physiome/journal-website'>https://github.com/Physiome/journal-website</a> # timeout=10
 &gt; git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10
 &gt; git config remote.origin.url <a href='https://github.com/Physiome/journal-website'>https://github.com/Physiome/journal-website</a> # timeout=10
Fetching upstream changes from <a href='https://github.com/Physiome/journal-website'>https://github.com/Physiome/journal-website</a>
 &gt; git fetch --tags --progress -- <a href='https://github.com/Physiome/journal-website'>https://github.com/Physiome/journal-website</a> +refs/heads/*:refs/remotes/origin/* # timeout=10
 &gt; git rev-parse refs/remotes/origin/journaldev^{commit} # timeout=10
 &gt; git rev-parse refs/remotes/origin/origin/journaldev^{commit} # timeout=10
Checking out Revision 3ea9d0b7aadbb8cbebe6205e254870c26bd58902 (refs/remotes/origin/journaldev)
 &gt; git config core.sparsecheckout # timeout=10
 &gt; git checkout -f 3ea9d0b7aadbb8cbebe6205e254870c26bd58902 # timeout=10
Commit message: "Merge pull request #54 from KarinLundengard/TemporaryStagingForIUPS"
 &gt; git rev-list --no-walk 4b9ce0be07af0d3c5b3fd35273f658ed4b220979 # timeout=10
[Set GitHub commit status (universal)] PENDING on repos [GHRepository@5f6fa96c[description=Source for journal.physiomeproject.org.,homepage=&lt;null&gt;,name=journal-website,fork=false,archived=false,size=16230,milestones={},language=HTML,commits={},source=&lt;null&gt;,parent=&lt;null&gt;,responseHeaderFields={null=[HTTP/1.1 200 OK], Access-Control-Allow-Origin=[*], Access-Control-Expose-Headers=[ETag, Link, Location, Retry-After, X-GitHub-OTP, X-RateLimit-Limit, X-RateLimit-Remaining, X-RateLimit-Reset, X-OAuth-Scopes, X-Accepted-OAuth-Scopes, X-Poll-Interval, X-GitHub-Media-Type, Deprecation, Sunset], Cache-Control=[private, max-age=60, s-maxage=60], Content-Encoding=[gzip], Content-Security-Policy=[default-src 'none'], Content-Type=[application/json; charset=utf-8], Date=[Thu, 11 Jun 2020 04:19:25 GMT], ETag=[W/"ea7793d5edda1fe92b7a36fb2b1a3708"], Last-Modified=[Thu, 11 Jun 2020 04:19:06 GMT], OkHttp-Received-Millis=[1591849165841], OkHttp-Response-Source=[CONDITIONAL_CACHE 200], OkHttp-Selected-Protocol=[http/1.1], OkHttp-Sent-Millis=[1591849165519], Referrer-Policy=[origin-when-cross-origin, strict-origin-when-cross-origin], Server=[GitHub.com], Status=[200 OK], Strict-Transport-Security=[max-age=31536000; includeSubdomains; preload], Transfer-Encoding=[chunked], Vary=[Accept, Authorization, Cookie, X-GitHub-OTP, Accept-Encoding, Accept, X-Requested-With, Accept-Encoding], X-Accepted-OAuth-Scopes=[repo], X-Content-Type-Options=[nosniff], X-Frame-Options=[deny], X-GitHub-Media-Type=[github.v3; format=json], X-GitHub-Request-Id=[DDAC:3C4B:A3E44:BFACA:5EE1B0CD], X-OAuth-Scopes=[admin:repo_hook, repo, repo:status], X-RateLimit-Limit=[5000], X-RateLimit-Remaining=[4999], X-RateLimit-Reset=[1591852765], X-XSS-Protection=[1; mode=block]},url=<a href='https://api.github.com/repos/Physiome/journal-website,id=94735176'>https://api.github.com/repos/Physiome/journal-website,id=94735176</a>]] (sha:3ea9d0b) with context:journaldev-build
Setting commit status on GitHub for <a href='https://github.com/Physiome/journal-website/commit/3ea9d0b7aadbb8cbebe6205e254870c26bd58902'>https://github.com/Physiome/journal-website/commit/3ea9d0b7aadbb8cbebe6205e254870c26bd58902</a>
[PhysiomeJournalDevelopmentSite] $ /usr/bin/python2.7 /home/cmiss/Jenkins/shiningpanda/jobs/888df718/virtualenv.py /home/cmiss/Jenkins/shiningpanda/jobs/888df718/virtualenvs/d41d8cd9
New python executable in /home/cmiss/Jenkins/shiningpanda/jobs/888df718/virtualenvs/d41d8cd9/bin/python2.7
Also creating executable in /home/cmiss/Jenkins/shiningpanda/jobs/888df718/virtualenvs/d41d8cd9/bin/python
Installing setuptools, pip, wheel...done.
[PhysiomeJournalDevelopmentSite] $ /bin/sh -xe /tmp/shiningpanda12015504132343017445.sh
+ make deps
pip install -r py-requirements.txt
DEPRECATION: Python 2.7 reached the end of its life on January 1st, 2020. Please upgrade your Python as Python 2.7 is no longer maintained. pip 21.0 will drop support for Python 2.7 in January 2021. More details about Python 2 support in pip, can be found at <a href='https://pip.pypa.io/en/latest/development/release-process/#python-2-support'>https://pip.pypa.io/en/latest/development/release-process/#python-2-support</a>
Collecting pelican&gt;3.6
  Using cached pelican-4.2.0-py2.py3-none-any.whl (258 kB)
Collecting markdown
  Using cached Markdown-3.1.1-py2.py3-none-any.whl (87 kB)
Collecting six&gt;=1.4
  Using cached six-1.15.0-py2.py3-none-any.whl (10 kB)
Processing /home/cmiss/.cache/pip/wheels/68/1c/e0/44629d259095aa5f4af96d3c4638f46998e4c5b9b02c1cad3f/feedgenerator-1.9.1-py2-none-any.whl
Processing /home/cmiss/.cache/pip/wheels/92/a0/00/8690a57883956a301d91cf4ec999cc0b258b01e3f548f86e89/blinker-1.4-cp27-none-any.whl
Collecting unidecode
  Using cached Unidecode-1.1.1-py2.py3-none-any.whl (238 kB)
Collecting python-dateutil
  Using cached python_dateutil-2.8.1-py2.py3-none-any.whl (227 kB)
Collecting pytz&gt;=0a
  Using cached pytz-2020.1-py2.py3-none-any.whl (510 kB)
Collecting docutils
  Using cached docutils-0.16-py2.py3-none-any.whl (548 kB)
Collecting jinja2&gt;=2.7
  Using cached Jinja2-2.11.2-py2.py3-none-any.whl (125 kB)
Collecting pygments
  Using cached Pygments-2.5.2-py2.py3-none-any.whl (896 kB)
Requirement already satisfied: setuptools&gt;=36 in /home/cmiss/Jenkins/shiningpanda/jobs/888df718/virtualenvs/d41d8cd9/lib/python2.7/site-packages (from markdown-&gt;-r py-requirements.txt (line 2)) (44.1.1)
Collecting MarkupSafe&gt;=0.23
  Using cached MarkupSafe-1.1.1-cp27-cp27mu-manylinux1_x86_64.whl (24 kB)
Installing collected packages: six, pytz, feedgenerator, blinker, unidecode, python-dateutil, docutils, MarkupSafe, jinja2, pygments, pelican, markdown
Successfully installed MarkupSafe-1.1.1 blinker-1.4 docutils-0.16 feedgenerator-1.9.1 jinja2-2.11.2 markdown-3.1.1 pelican-4.2.0 pygments-2.5.2 python-dateutil-2.8.1 pytz-2020.1 six-1.15.0 unidecode-1.1.1
+ make html
pelican /home/cmiss/Jenkins/workspace/PhysiomeJournalDevelopmentSite/content -o /home/cmiss/Jenkins/workspace/PhysiomeJournalDevelopmentSite/output -s /home/cmiss/Jenkins/workspace/PhysiomeJournalDevelopmentSite/pelicanconf.py 
CRITICAL: UndefinedError: 'article' is undefined
Makefile:64: recipe for target 'html' failed
make: *** [html] Error 1
Build step 'Virtualenv Builder' marked build as failure
[Set GitHub commit status (universal)] ERROR on repos [GHRepository@35995c5a[description=Source for journal.physiomeproject.org.,homepage=&lt;null&gt;,name=journal-website,fork=false,archived=false,size=16230,milestones={},language=HTML,commits={},source=&lt;null&gt;,parent=&lt;null&gt;,responseHeaderFields={null=[HTTP/1.1 200 OK], Access-Control-Allow-Origin=[*], Access-Control-Expose-Headers=[ETag, Link, Location, Retry-After, X-GitHub-OTP, X-RateLimit-Limit, X-RateLimit-Remaining, X-RateLimit-Reset, X-OAuth-Scopes, X-Accepted-OAuth-Scopes, X-Poll-Interval, X-GitHub-Media-Type, Deprecation, Sunset], Cache-Control=[private, max-age=60, s-maxage=60], Content-Encoding=[gzip], Content-Security-Policy=[default-src 'none'], Content-Type=[application/json; charset=utf-8], Date=[Thu, 11 Jun 2020 04:19:25 GMT], ETag=[W/"ea7793d5edda1fe92b7a36fb2b1a3708"], Last-Modified=[Thu, 11 Jun 2020 04:19:06 GMT], OkHttp-Received-Millis=[1591849165841], OkHttp-Response-Source=[CACHE 200], OkHttp-Selected-Protocol=[http/1.1], OkHttp-Sent-Millis=[1591849165519], Referrer-Policy=[origin-when-cross-origin, strict-origin-when-cross-origin], Server=[GitHub.com], Status=[200 OK], Strict-Transport-Security=[max-age=31536000; includeSubdomains; preload], Transfer-Encoding=[chunked], Vary=[Accept, Authorization, Cookie, X-GitHub-OTP, Accept-Encoding, Accept, X-Requested-With, Accept-Encoding], X-Accepted-OAuth-Scopes=[repo], X-Content-Type-Options=[nosniff], X-Frame-Options=[deny], X-GitHub-Media-Type=[github.v3; format=json], X-GitHub-Request-Id=[DDAC:3C4B:A3E44:BFACA:5EE1B0CD], X-OAuth-Scopes=[admin:repo_hook, repo, repo:status], X-RateLimit-Limit=[5000], X-RateLimit-Remaining=[4999], X-RateLimit-Reset=[1591852765], X-XSS-Protection=[1; mode=block]},url=<a href='https://api.github.com/repos/Physiome/journal-website,id=94735176'>https://api.github.com/repos/Physiome/journal-website,id=94735176</a>]] (sha:3ea9d0b) with context:journaldev-build
Setting commit status on GitHub for <a href='https://github.com/Physiome/journal-website/commit/3ea9d0b7aadbb8cbebe6205e254870c26bd58902'>https://github.com/Physiome/journal-website/commit/3ea9d0b7aadbb8cbebe6205e254870c26bd58902</a>
Finished: FAILURE