GitHub pull request #21 of commit 3357cd3c3116ca939dd543c2f7455d27a089ed3b, no merge conflicts. Running as SYSTEM Setting status of 3357cd3c3116ca939dd543c2f7455d27a089ed3b to PENDING with url https://autotest.bioeng.auckland.ac.nz/jenkins/job/Physiome%20Portal/32/ and message: 'Build started for merge commit.' Building remotely on Ubuntu_16.04_bioeng49 (buildslave Testing) in workspace /home/cmiss/Jenkins/workspace/Physiome Portal [WS-CLEANUP] Deleting project workspace... [WS-CLEANUP] Deferred wipeout is used... [WS-CLEANUP] Done No credentials specified Cloning the remote Git repository Cloning repository https://github.com/ABI-Software/MPB.git > git init /home/cmiss/Jenkins/workspace/Physiome Portal # timeout=10 Fetching upstream changes from https://github.com/ABI-Software/MPB.git > git --version # timeout=10 > git fetch --tags --progress -- https://github.com/ABI-Software/MPB.git +refs/heads/*:refs/remotes/origin/* # timeout=10 > git config remote.origin.url https://github.com/ABI-Software/MPB.git # timeout=10 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10 > git config remote.origin.url https://github.com/ABI-Software/MPB.git # timeout=10 Fetching upstream changes from https://github.com/ABI-Software/MPB.git > git fetch --tags --progress -- https://github.com/ABI-Software/MPB.git +refs/pull/*:refs/remotes/origin/pr/* # timeout=10 > git rev-parse refs/remotes/origin/pr/21/merge^{commit} # timeout=10 > git rev-parse refs/remotes/origin/origin/pr/21/merge^{commit} # timeout=10 Checking out Revision 7b4d921f6871afd694a3fe3556044eada1aa02de (refs/remotes/origin/pr/21/merge) > git config core.sparsecheckout # timeout=10 > git checkout -f 7b4d921f6871afd694a3fe3556044eada1aa02de # timeout=10 Commit message: "Merge 3357cd3c3116ca939dd543c2f7455d27a089ed3b into cb489ddf3f0d065dbabe7a9bed3061a0c182c590" First time build. Skipping changelog. [Physiome Portal] $ /bin/sh -xe /tmp/jenkins16985376158018031882.sh + npm install > core-js@2.6.11 postinstall /home/cmiss/Jenkins/workspace/Physiome Portal/node_modules/core-js > node -e "try{require('./postinstall')}catch(e){}" npm WARN optional SKIPPING OPTIONAL DEPENDENCY: fsevents@1.2.13 (node_modules/watchpack-chokidar2/node_modules/fsevents): npm WARN notsup SKIPPING OPTIONAL DEPENDENCY: Unsupported platform for fsevents@1.2.13: wanted {"os":"darwin","arch":"any"} (current: {"os":"linux","arch":"x64"}) npm WARN optional SKIPPING OPTIONAL DEPENDENCY: fsevents@2.1.3 (node_modules/fsevents): npm WARN notsup SKIPPING OPTIONAL DEPENDENCY: Unsupported platform for fsevents@2.1.3: wanted {"os":"darwin","arch":"any"} (current: {"os":"linux","arch":"x64"}) added 740 packages from 385 contributors and audited 744 packages in 18.28s found 0 vulnerabilities + npm run build > physiomeportal@0.4.20 build /home/cmiss/Jenkins/workspace/Physiome Portal > webpack --config webpack.frontend.js --mode=none; webpack --config webpack.backend.js --mode=none Hash: f1329b2dfc71e782255b Version: webpack 4.44.1 Time: 42631ms Built at: 08/12/2020 11:36:11 AM Asset Size Chunks Chunk Names physiomeportal.frontend.js 2.11 MiB 0 [emitted] physiomeportal physiomeportal.frontend.js.map 5.14 MiB 0 [emitted] [dev] physiomeportal Entrypoint physiomeportal = physiomeportal.frontend.js physiomeportal.frontend.js.map [0] ./src/index.js 1.69 KiB {0} [built] [1] ./src/styles/bootstrap_row_col.css 1.09 KiB {0} [built] [6] ./src/styles/w3.css 1.05 KiB {0} [built] [9] ./src/modules/BaseModule.js 2.86 KiB {0} [built] [21] ./src/utilities/eventNotifier.js 1.33 KiB {0} [built] [22] ./src/modules/bodyRenderer.js 6.5 KiB {0} [built] [88] ./src/modules/RendererModule.js 7.4 KiB {0} [built] [95] ./src/modelsLoader.js 3.16 KiB {0} [built] [96] ./src/modules/organsRenderer.js 15.1 KiB {0} [built] [100] ./src/modules/ScaffoldViewer.js 13.9 KiB {0} [built] [105] ./src/ui/BaseDialog.js 8.96 KiB {0} [built] [132] ./src/ui/OrgansViewerDialog.js 7.61 KiB {0} [built] [140] ./src/ui/ScaffoldDialog.js 4.66 KiB {0} [built] [149] ./src/ui/BodyViewerDialog.js 6.94 KiB {0} [built] [151] ./src/ui/ManagerSidebar.js 9 KiB {0} [built] + 337 hidden modules Hash: cd6b55f00af5b24e1621 Version: webpack 4.44.1 Time: 8644ms Built at: 08/12/2020 11:36:20 AM Asset Size Chunks Chunk Names physiomeportal.js 448 KiB 0 [emitted] physiomeportal physiomeportal.js.map 884 KiB 0 [emitted] [dev] physiomeportal Entrypoint physiomeportal = physiomeportal.js physiomeportal.js.map [0] ./src/index.js 1.69 KiB {0} [built] [1] ./src/styles/bootstrap_row_col.css 1.09 KiB {0} [built] [6] ./src/styles/w3.css 1.05 KiB {0} [built] [8] external "polyfill-array-includes" 42 bytes {0} [built] [9] ./src/modules/BaseModule.js 2.86 KiB {0} [built] [11] ./src/utilities/eventNotifier.js 1.33 KiB {0} [built] [12] ./src/modules/bodyRenderer.js 6.5 KiB {0} [built] [22] ./src/modules/RendererModule.js 7.4 KiB {0} [built] [29] ./src/modelsLoader.js 3.16 KiB {0} [built] [30] ./src/modules/organsRenderer.js 15.1 KiB {0} [built] [34] ./src/modules/ScaffoldViewer.js 13.9 KiB {0} [built] [40] ./src/ui/BaseDialog.js 8.96 KiB {0} [built] [68] ./src/ui/OrgansViewerDialog.js 7.61 KiB {0} [built] [76] ./src/ui/ScaffoldDialog.js 4.66 KiB {0} [built] [83] ./src/ui/BodyViewerDialog.js 6.94 KiB {0} [built] + 84 hidden modules + xvfb-run -s -screen 0 1024x1024x24 npm run test > physiomeportal@0.4.20 test /home/cmiss/Jenkins/workspace/Physiome Portal > npm --prefix ./test install && npm --prefix ./test run test-ci > nodent-runtime@3.2.1 install /home/cmiss/Jenkins/workspace/Physiome Portal/test/node_modules/nodent-runtime > node build.js ## Built /home/cmiss/Jenkins/workspace/Physiome Portal/test/node_modules/nodent-runtime/dist/index.js > canvas@2.6.1 install /home/cmiss/Jenkins/workspace/Physiome Portal/test/node_modules/canvas > node-pre-gyp install --fallback-to-build node-pre-gyp WARN Using request for node-pre-gyp https download [canvas] Success: "/home/cmiss/Jenkins/workspace/Physiome Portal/test/node_modules/canvas/build/Release/canvas.node" is installed via remote > gl@4.5.3 install /home/cmiss/Jenkins/workspace/Physiome Portal/test/node_modules/gl > prebuild-install || node-gyp rebuild > core-js@2.6.11 postinstall /home/cmiss/Jenkins/workspace/Physiome Portal/test/node_modules/core-js > node -e "try{require('./postinstall')}catch(e){}" npm WARN optional SKIPPING OPTIONAL DEPENDENCY: fsevents@2.1.3 (node_modules/watchpack/node_modules/fsevents): npm WARN notsup SKIPPING OPTIONAL DEPENDENCY: Unsupported platform for fsevents@2.1.3: wanted {"os":"darwin","arch":"any"} (current: {"os":"linux","arch":"x64"}) npm WARN optional SKIPPING OPTIONAL DEPENDENCY: fsevents@1.2.11 (node_modules/fsevents): npm WARN notsup SKIPPING OPTIONAL DEPENDENCY: Unsupported platform for fsevents@1.2.11: wanted {"os":"darwin","arch":"any"} (current: {"os":"linux","arch":"x64"}) added 887 packages from 689 contributors and audited 957 packages in 28.98s found 10 vulnerabilities (8 low, 2 high) run `npm audit fix` to fix them, or `npm audit` for details > @ test-ci /home/cmiss/Jenkins/workspace/Physiome Portal/test > mocha-webpack --reporter mocha-junit-reporter (node:8618) ExperimentalWarning: The fs.promises API is experimental WEBPACK Compiling... WEBPACK Compiled successfully in 5072ms MOCHA Testing... Error: Could not parse CSS stylesheet at exports.createStylesheet (/home/cmiss/Jenkins/workspace/Physiome Portal/test/node_modules/jsdom/lib/jsdom/living/helpers/stylesheets.js:34:21) at HTMLStyleElementImpl._updateAStyleBlock (/home/cmiss/Jenkins/workspace/Physiome Portal/test/node_modules/jsdom/lib/jsdom/living/nodes/HTMLStyleElement-impl.js:68:5) at HTMLStyleElementImpl._childTextContentChangeSteps (/home/cmiss/Jenkins/workspace/Physiome Portal/test/node_modules/jsdom/lib/jsdom/living/nodes/HTMLStyleElement-impl.js:36:12) at HTMLStyleElementImpl._insert (/home/cmiss/Jenkins/workspace/Physiome Portal/test/node_modules/jsdom/lib/jsdom/living/nodes/Node-impl.js:832:14) at HTMLStyleElementImpl._preInsert (/home/cmiss/Jenkins/workspace/Physiome Portal/test/node_modules/jsdom/lib/jsdom/living/nodes/Node-impl.js:768:10) at HTMLStyleElementImpl._append (/home/cmiss/Jenkins/workspace/Physiome Portal/test/node_modules/jsdom/lib/jsdom/living/nodes/Node-impl.js:868:17) at HTMLStyleElementImpl.appendChild (/home/cmiss/Jenkins/workspace/Physiome Portal/test/node_modules/jsdom/lib/jsdom/living/nodes/Node-impl.js:610:17) at HTMLStyleElement.appendChild (/home/cmiss/Jenkins/workspace/Physiome Portal/test/node_modules/jsdom/lib/jsdom/living/generated/Node.js:395:60) at applyToTag (/home/cmiss/Jenkins/workspace/Physiome Portal/test/node_modules/style-loader/lib/addStyles.js:348:1) at addStyle (/home/cmiss/Jenkins/workspace/Physiome Portal/test/node_modules/style-loader/lib/addStyles.js:285:1) at addStylesToDom (/home/cmiss/Jenkins/workspace/Physiome Portal/test/node_modules/style-loader/lib/addStyles.js:136:1) at module.exports (/home/cmiss/Jenkins/workspace/Physiome Portal/test/node_modules/style-loader/lib/addStyles.js:87:1) at Object.<anonymous> (/home/cmiss/Jenkins/workspace/Physiome Portal/src/styles/my_styles.css?5fdb:16:1) at __webpack_require__ (/home/cmiss/Jenkins/workspace/Physiome Portal/test/.tmp/mocha-webpack/1597189013387/webpack/bootstrap:19:1) at Object.<anonymous> (/home/cmiss/Jenkins/workspace/Physiome Portal/test/.tmp/mocha-webpack/src/ui/OrgansViewerDialog.js:1:1) at __webpack_require__ (/home/cmiss/Jenkins/workspace/Physiome Portal/test/.tmp/mocha-webpack/1597189013387/webpack/bootstrap:19:1) at Object.<anonymous> (/home/cmiss/Jenkins/workspace/Physiome Portal/test/.tmp/mocha-webpack/src/index.js:16:1) at __webpack_require__ (/home/cmiss/Jenkins/workspace/Physiome Portal/test/.tmp/mocha-webpack/1597189013387/webpack/bootstrap:19:1) at Object.<anonymous> (/home/cmiss/Jenkins/workspace/Physiome Portal/test/.tmp/mocha-webpack/1597189013387/test/organsViewer.test.js:1:1) at __webpack_require__ (/home/cmiss/Jenkins/workspace/Physiome Portal/test/.tmp/mocha-webpack/1597189013387/webpack/bootstrap:19:1) at run (/home/cmiss/Jenkins/workspace/Physiome Portal/test/node_modules/mocha-webpack/lib/entry.js:3:1) at Array.forEach (<anonymous>) at Object.<anonymous> (/home/cmiss/Jenkins/workspace/Physiome Portal/test/node_modules/mocha-webpack/lib/entry.js:10:1) at __webpack_require__ (/home/cmiss/Jenkins/workspace/Physiome Portal/test/.tmp/mocha-webpack/1597189013387/webpack/bootstrap:19:1) at ids (/home/cmiss/Jenkins/workspace/Physiome Portal/test/.tmp/mocha-webpack/1597189013387/webpack/bootstrap:83:1) at Object.<anonymous> (/home/cmiss/Jenkins/workspace/Physiome Portal/test/.tmp/mocha-webpack/1597189013387/main.js:87:10) at Module._compile (internal/modules/cjs/loader.js:689:30) at Object._module2.default._extensions.(anonymous function) [as .js] (/home/cmiss/Jenkins/workspace/Physiome Portal/test/node_modules/mocha-webpack/lib/util/registerRequireHook.js:148:12) at Module.load (internal/modules/cjs/loader.js:599:32) at tryModuleLoad (internal/modules/cjs/loader.js:538:12) at Function.Module._load (internal/modules/cjs/loader.js:530:3) at Module.require (internal/modules/cjs/loader.js:637:17) at require (internal/modules/cjs/helpers.js:22:18) at /home/cmiss/Jenkins/workspace/Physiome Portal/test/node_modules/mocha/lib/mocha.js:231:27 at Array.forEach (<anonymous>) at Mocha.loadFiles (/home/cmiss/Jenkins/workspace/Physiome Portal/test/node_modules/mocha/lib/mocha.js:228:14) at Mocha.run (/home/cmiss/Jenkins/workspace/Physiome Portal/test/node_modules/mocha/lib/mocha.js:536:10) at /home/cmiss/Jenkins/workspace/Physiome Portal/test/node_modules/mocha-webpack/lib/runner/TestRunner.js:191:27 at /home/cmiss/Jenkins/workspace/Physiome Portal/test/node_modules/mocha-webpack/lib/webpack/compiler/registerReadyCallback.js:26:7 at AsyncSeriesHook.eval [as callAsync] (eval at create (/home/cmiss/Jenkins/workspace/Physiome Portal/test/node_modules/tapable/lib/HookCodeFactory.js:33:10), <anonymous>:18:1) at AsyncSeriesHook.lazyCompileHook (/home/cmiss/Jenkins/workspace/Physiome Portal/test/node_modules/tapable/lib/Hook.js:154:20) at emitRecords.err (/home/cmiss/Jenkins/workspace/Physiome Portal/test/node_modules/webpack/lib/Compiler.js:304:22) at Compiler.emitRecords (/home/cmiss/Jenkins/workspace/Physiome Portal/test/node_modules/webpack/lib/Compiler.js:499:39) at emitAssets.err (/home/cmiss/Jenkins/workspace/Physiome Portal/test/node_modules/webpack/lib/Compiler.js:298:10) at hooks.afterEmit.callAsync.err (/home/cmiss/Jenkins/workspace/Physiome Portal/test/node_modules/webpack/lib/Compiler.js:485:14) at AsyncSeriesHook.eval [as callAsync] (eval at create (/home/cmiss/Jenkins/workspace/Physiome Portal/test/node_modules/tapable/lib/HookCodeFactory.js:33:10), <anonymous>:6:1) at AsyncSeriesHook.lazyCompileHook (/home/cmiss/Jenkins/workspace/Physiome Portal/test/node_modules/tapable/lib/Hook.js:154:20) at asyncLib.forEachLimit.err (/home/cmiss/Jenkins/workspace/Physiome Portal/test/node_modules/webpack/lib/Compiler.js:482:27) at /home/cmiss/Jenkins/workspace/Physiome Portal/test/node_modules/neo-async/async.js:2818:7 at done (/home/cmiss/Jenkins/workspace/Physiome Portal/test/node_modules/neo-async/async.js:3522:9) at AsyncSeriesHook.eval [as callAsync] (eval at create (/home/cmiss/Jenkins/workspace/Physiome Portal/test/node_modules/tapable/lib/HookCodeFactory.js:33:10), <anonymous>:6:1) at AsyncSeriesHook.lazyCompileHook (/home/cmiss/Jenkins/workspace/Physiome Portal/test/node_modules/tapable/lib/Hook.js:154:20) at outputFileSystem.writeFile.err (/home/cmiss/Jenkins/workspace/Physiome Portal/test/node_modules/webpack/lib/Compiler.js:464:33) at MemoryFileSystem.writeFile (/home/cmiss/Jenkins/workspace/Physiome Portal/test/node_modules/memory-fs/lib/MemoryFileSystem.js:328:9) at writeOut (/home/cmiss/Jenkins/workspace/Physiome Portal/test/node_modules/webpack/lib/Compiler.js:462:30) at asyncLib.forEachLimit (/home/cmiss/Jenkins/workspace/Physiome Portal/test/node_modules/webpack/lib/Compiler.js:476:7) at arrayIterator (/home/cmiss/Jenkins/workspace/Physiome Portal/test/node_modules/neo-async/async.js:3467:9) at timesSync (/home/cmiss/Jenkins/workspace/Physiome Portal/test/node_modules/neo-async/async.js:2297:7) at Object.eachLimit (/home/cmiss/Jenkins/workspace/Physiome Portal/test/node_modules/neo-async/async.js:3463:5) at emitFiles (/home/cmiss/Jenkins/workspace/Physiome Portal/test/node_modules/webpack/lib/Compiler.js:358:13) at Immediate._onImmediate (/home/cmiss/Jenkins/workspace/Physiome Portal/test/node_modules/memory-fs/lib/MemoryFileSystem.js:288:4) at runCallback (timers.js:705:18) at tryOnImmediate (timers.js:676:5) at processImmediate (timers.js:658:5) .play { width:48px; height:48px; right: 10px; background-image: 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} .tissueDisplayPortCollapse { position:absolute; width:25%; left:50%;top:0%; height:50%; display: block; } .cellDisplayPortCollapse { position:absolute; height:50%; width:25%; left:50%; top:50%; border-top: 2px solid #000000; display: block; } .modelDisplayPortCollapse { position:absolute; height:100%; width:25%; left:75%; border-left: 2px solid #000000; display: block; } #bodyGui, #organGui, #tissueGui, #modelGui, #cellGui { position: absolute; left: 1%; z-index: 1; } #gui { transform:translate(0%, 0px); } .textContainer { position:relative; width:100%; } .titleContainer { position:relative; width:100%; padding-top: 1%; } .titleText { text-align: center;font-style: italic;font-size: 160%; text-shadow: -1px 0 white, 0 1px white, 1px 0 white, 0 -1px white; } .selectionText { text-align: center; text-shadow: -1px 0 white, 0 1px white, 1px 0 white, 0 -1px white; } img.model { display: block; margin-left: auto; margin-right: auto; margin-top: auto; margin-bottom: auto; max-height:100%; max-width:100%; } .cellSelectionButton { text-align: center; z-index:2; } #cellButtonDivider { position:absolute; width:100%; text-align: center; display:flex; } #modelsContainer { text-align:center; max-width:100%; max-height:80%; top:5%; right:0%; visibility: visible; position: relative; overflow-x: auto; overflow-y: auto; border-style: groove; } .svgContainer { height:90%; width:100%; } #ZoomControl{ visibility: visible; } #systemToggle { position:absolute; top:20%; left:2%; } .systemToggleButton { text-shadow: 1px 0 0 #000, 0 -1px 0 #000, 0 1px 0 #000, -1px 0 0 #000; width:37px; height:30px; color:#fff!important; font-size:15px; margin-top: 5px; text-align: center; } .systemToggleButtonOn { border-color: #00ff00; } .systemToggleButtonOff { border-color: #ff0000; } .systemToggleButtonPartial { border-color: #0000ff; } .systemToggleButtonOn:hover { background-color: RED !important; } .systemToggleButtonPartial:hover { background-color: GREEN !important; } .systemToggleButtonOff:hover { background-color: GREEN !important; } #organLinkButton { bottom: 3%; z-index:2; visibility: hidden; background-color:rgb(100%, 30%, 30%); } .modelButton { margin-top:5%; } #modelsController { position:relative; text-align:center; visibility:visible; display:block; }.leftTopButton { position:absolute; left: 1%; z-index:2; } .organsImg { max-height: 100%; max-width: 100%; position: absolute; } .organsImgContainer { text-align:left; top: 2%; height: 96%; left: 30%; width: 68%; position: absolute; } .range-slider { // Slider .input-range { -webkit-appearance: none; height: 200px; border-radius: 5px; background: #ccc; outline: none; writing-mode: bt-lr; /* IE */ -webkit-appearance: slider-vertical; /* WebKit */ } } .organsSecondSceneDisplay { height:100%; width:50%; left:50%; top:0%; border-left: 2px solid #000000; position:absolute; } .organsSecondNerveDisplay { height:100%; width:33%; left:33%; top:0%; border-left: 2px solid #000000; position:absolute; } .organsSVGDisplay { height:100%; width:34%; left:66%; top:0%; border-left: 2px solid #000000; position:absolute; } .portalDatGui { position:absolute; height: 95%; pointer-events: none; } #meshGui li.folder .dg .c { width:20%; } #meshGui li.folder .dg .property-name { width:80%; font-size:10px; } THREE.WebGLRenderer 93 THREE.WebGLRenderer: WEBGL_depth_texture extension not supported. THREE.WebGLRenderer: OES_texture_float_linear extension not supported. THREE.WebGLRenderer: OES_texture_half_float extension not supported. THREE.WebGLRenderer: OES_texture_half_float_linear extension not supported. MOCHA Tests completed with 1 failure(s) npm ERR! code ELIFECYCLE npm ERR! errno 1 npm ERR! @ test-ci: `mocha-webpack --reporter mocha-junit-reporter` npm ERR! Exit status 1 npm ERR! npm ERR! Failed at the @ test-ci script. npm ERR! This is probably not a problem with npm. There is likely additional logging output above. npm ERR! A complete log of this run can be found in: npm ERR! /home/cmiss/.npm/_logs/2020-08-11T23_36_59_658Z-debug.log npm ERR! code ELIFECYCLE npm ERR! errno 1 npm ERR! physiomeportal@0.4.20 test: `npm --prefix ./test install && npm --prefix ./test run test-ci` npm ERR! Exit status 1 npm ERR! npm ERR! Failed at the physiomeportal@0.4.20 test script. npm ERR! This is probably not a problem with npm. There is likely additional logging output above. npm ERR! A complete log of this run can be found in: npm ERR! /home/cmiss/.npm/_logs/2020-08-11T23_36_59_673Z-debug.log Build step 'Execute shell' marked build as failure Recording test results [Set GitHub commit status (universal)] ERROR on repos [GHRepository@1e1eaabe[nodeId=MDEwOlJlcG9zaXRvcnkxMTUwNTM3Mzc=,description=Multiscale Physiome Browser,homepage=<null>,name=MPB,fork=true,archived=false,size=35136,milestones={},language=JavaScript,commits={},url=https://api.github.com/repos/ABI-Software/MPB,id=115053737,nodeId=<null>,createdAt=2017-12-21T22:46:00Z,updatedAt=2020-04-28T11:11:13Z]] (sha:7b4d921) with context:Physiome Portal Setting commit status on GitHub for https://github.com/ABI-Software/MPB/commit/7b4d921f6871afd694a3fe3556044eada1aa02de Setting status of 3357cd3c3116ca939dd543c2f7455d27a089ed3b to FAILURE with url https://autotest.bioeng.auckland.ac.nz/jenkins/job/Physiome%20Portal/32/ and message: 'Build finished. ' Finished: FAILURE