GitHub pull request #16 of commit d3d25d036f39063d932c21b9819d5d916c5ebb05, no merge conflicts. Setting status of d3d25d036f39063d932c21b9819d5d916c5ebb05 to PENDING with url https://autotest.bioeng.auckland.ac.nz/jenkins/job/Physiome%20Portal/26/ and message: 'Build started for merge commit.' Building remotely on Ubuntu_16.04_bioeng49 (buildslave Testing) in workspace /home/cmiss/Jenkins/workspace/Physiome Portal [WS-CLEANUP] Deleting project workspace... [WS-CLEANUP] Deferred wipeout is used... [WS-CLEANUP] Done No credentials specified Cloning the remote Git repository Cloning repository https://github.com/ABI-Software/MPB.git > git init /home/cmiss/Jenkins/workspace/Physiome Portal # timeout=10 Fetching upstream changes from https://github.com/ABI-Software/MPB.git > git --version # timeout=10 > git fetch --tags --progress -- https://github.com/ABI-Software/MPB.git +refs/heads/*:refs/remotes/origin/* # timeout=10 > git config remote.origin.url https://github.com/ABI-Software/MPB.git # timeout=10 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10 > git config remote.origin.url https://github.com/ABI-Software/MPB.git # timeout=10 Fetching upstream changes from https://github.com/ABI-Software/MPB.git > git fetch --tags --progress -- https://github.com/ABI-Software/MPB.git +refs/pull/*:refs/remotes/origin/pr/* # timeout=10 > git rev-parse refs/remotes/origin/pr/16/merge^{commit} # timeout=10 > git rev-parse refs/remotes/origin/origin/pr/16/merge^{commit} # timeout=10 Checking out Revision 1c4083ce4f011a88977da58f24a514914bc9c5e4 (refs/remotes/origin/pr/16/merge) > git config core.sparsecheckout # timeout=10 > git checkout -f 1c4083ce4f011a88977da58f24a514914bc9c5e4 # timeout=10 Commit message: "Merge d3d25d036f39063d932c21b9819d5d916c5ebb05 into 8301ee44d8e702bf39460e6e4409ebeb1a6334a5" First time build. Skipping changelog. [Physiome Portal] $ /bin/sh -xe /tmp/jenkins7057929238807834268.sh + npm install > core-js@2.6.11 postinstall /home/cmiss/Jenkins/workspace/Physiome Portal/node_modules/core-js > node -e "try{require('./postinstall')}catch(e){}" npm WARN optional SKIPPING OPTIONAL DEPENDENCY: fsevents@1.2.11 (node_modules/fsevents): npm WARN notsup SKIPPING OPTIONAL DEPENDENCY: Unsupported platform for fsevents@1.2.11: wanted {"os":"darwin","arch":"any"} (current: {"os":"linux","arch":"x64"}) added 700 packages from 378 contributors and audited 7395 packages in 29.824s found 0 vulnerabilities + npm run build > physiomeportal@0.4.13 build /home/cmiss/Jenkins/workspace/Physiome Portal > webpack --config webpack.frontend.js --mode=none; webpack --config webpack.backend.js --mode=none Hash: 08200f182d2bf24ad1b3 Version: webpack 4.41.3 Time: 44829ms Built at: 01/09/2020 11:54:53 AM Asset Size Chunks Chunk Names physiomeportal.frontend.js 2.1 MiB 0 [emitted] physiomeportal physiomeportal.frontend.js.map 5.11 MiB 0 [emitted] [dev] physiomeportal Entrypoint physiomeportal = physiomeportal.frontend.js physiomeportal.frontend.js.map [0] ./src/index.js 1.69 KiB {0} [built] [1] ./src/styles/bootstrap_row_col.css 1.09 KiB {0} [built] [6] ./src/styles/w3.css 1.05 KiB {0} [built] [9] ./src/modules/BaseModule.js 2.86 KiB {0} [built] [21] ./src/utilities/eventNotifier.js 1.33 KiB {0} [built] [22] ./src/modules/bodyRenderer.js 6.47 KiB {0} [built] [89] ./src/modules/RendererModule.js 4.62 KiB {0} [built] [95] ./src/modelsLoader.js 3.13 KiB {0} [built] [96] ./src/modules/organsRenderer.js 13.8 KiB {0} [built] [100] ./src/modules/ScaffoldViewer.js 13.9 KiB {0} [built] [105] ./src/ui/BaseDialog.js 8.96 KiB {0} [built] [132] ./src/ui/OrgansViewerDialog.js 7.61 KiB {0} [built] [140] ./src/ui/ScaffoldDialog.js 4.66 KiB {0} [built] [149] ./src/ui/BodyViewerDialog.js 6.94 KiB {0} [built] [151] ./src/ui/ManagerSidebar.js 9 KiB {0} [built] + 337 hidden modules Hash: f917a835144b776cab56 Version: webpack 4.41.3 Time: 12235ms Built at: 01/09/2020 11:55:10 AM Asset Size Chunks Chunk Names physiomeportal.js 444 KiB 0 [emitted] physiomeportal physiomeportal.js.map 875 KiB 0 [emitted] [dev] physiomeportal Entrypoint physiomeportal = physiomeportal.js physiomeportal.js.map [0] ./src/index.js 1.69 KiB {0} [built] [1] ./src/styles/bootstrap_row_col.css 1.09 KiB {0} [built] [6] ./src/styles/w3.css 1.05 KiB {0} [built] [8] external "polyfill-array-includes" 42 bytes {0} [built] [9] ./src/modules/BaseModule.js 2.86 KiB {0} [built] [11] ./src/utilities/eventNotifier.js 1.33 KiB {0} [built] [12] ./src/modules/bodyRenderer.js 6.47 KiB {0} [built] [23] ./src/modules/RendererModule.js 4.62 KiB {0} [built] [29] ./src/modelsLoader.js 3.13 KiB {0} [built] [30] ./src/modules/organsRenderer.js 13.8 KiB {0} [built] [34] ./src/modules/ScaffoldViewer.js 13.9 KiB {0} [built] [40] ./src/ui/BaseDialog.js 8.96 KiB {0} [built] [68] ./src/ui/OrgansViewerDialog.js 7.61 KiB {0} [built] [76] ./src/ui/ScaffoldDialog.js 4.66 KiB {0} [built] [83] ./src/ui/BodyViewerDialog.js 6.94 KiB {0} [built] + 84 hidden modules + xvfb-run -s -screen 0 1024x1024x24 npm run test > physiomeportal@0.4.13 test /home/cmiss/Jenkins/workspace/Physiome Portal > npm --prefix ./test install && npm --prefix ./test run test-ci > nodent-runtime@3.2.1 install /home/cmiss/Jenkins/workspace/Physiome Portal/test/node_modules/nodent-runtime > node build.js ## Built /home/cmiss/Jenkins/workspace/Physiome Portal/test/node_modules/nodent-runtime/dist/index.js > canvas@2.6.1 install /home/cmiss/Jenkins/workspace/Physiome Portal/test/node_modules/canvas > node-pre-gyp install --fallback-to-build node-pre-gyp WARN Using request for node-pre-gyp https download [canvas] Success: "/home/cmiss/Jenkins/workspace/Physiome Portal/test/node_modules/canvas/build/Release/canvas.node" is installed via remote > gl@4.4.0 install /home/cmiss/Jenkins/workspace/Physiome Portal/test/node_modules/gl > prebuild-install || node-gyp rebuild > core-js@2.6.11 postinstall /home/cmiss/Jenkins/workspace/Physiome Portal/test/node_modules/core-js > node -e "try{require('./postinstall')}catch(e){}" npm WARN optional SKIPPING OPTIONAL DEPENDENCY: fsevents@1.2.11 (node_modules/fsevents): npm WARN notsup SKIPPING OPTIONAL DEPENDENCY: Unsupported platform for fsevents@1.2.11: wanted {"os":"darwin","arch":"any"} (current: {"os":"linux","arch":"x64"}) added 856 packages from 689 contributors and audited 8981 packages in 33.294s found 0 vulnerabilities > @ test-ci /home/cmiss/Jenkins/workspace/Physiome Portal/test > mocha-webpack --reporter mocha-junit-reporter WEBPACK Compiling... WEBPACK Compiled successfully in 5745ms MOCHA Testing... Error: Could not parse CSS stylesheet at exports.createStylesheet (/home/cmiss/Jenkins/workspace/Physiome Portal/test/node_modules/jsdom/lib/jsdom/living/helpers/stylesheets.js:34:21) at HTMLStyleElementImpl._updateAStyleBlock (/home/cmiss/Jenkins/workspace/Physiome Portal/test/node_modules/jsdom/lib/jsdom/living/nodes/HTMLStyleElement-impl.js:68:5) at HTMLStyleElementImpl._childTextContentChangeSteps (/home/cmiss/Jenkins/workspace/Physiome Portal/test/node_modules/jsdom/lib/jsdom/living/nodes/HTMLStyleElement-impl.js:36:12) at HTMLStyleElementImpl._insert (/home/cmiss/Jenkins/workspace/Physiome Portal/test/node_modules/jsdom/lib/jsdom/living/nodes/Node-impl.js:688:14) at HTMLStyleElementImpl._preInsert (/home/cmiss/Jenkins/workspace/Physiome Portal/test/node_modules/jsdom/lib/jsdom/living/nodes/Node-impl.js:644:10) at HTMLStyleElementImpl._append (/home/cmiss/Jenkins/workspace/Physiome Portal/test/node_modules/jsdom/lib/jsdom/living/nodes/Node-impl.js:714:17) at HTMLStyleElementImpl.appendChild (/home/cmiss/Jenkins/workspace/Physiome Portal/test/node_modules/jsdom/lib/jsdom/living/nodes/Node-impl.js:501:17) at HTMLStyleElement.appendChild (/home/cmiss/Jenkins/workspace/Physiome Portal/test/node_modules/jsdom/lib/jsdom/living/generated/Node.js:276:47) at applyToTag (/home/cmiss/Jenkins/workspace/Physiome Portal/test/node_modules/style-loader/lib/addStyles.js:348:1) at addStyle (/home/cmiss/Jenkins/workspace/Physiome Portal/test/node_modules/style-loader/lib/addStyles.js:285:1) at addStylesToDom (/home/cmiss/Jenkins/workspace/Physiome Portal/test/node_modules/style-loader/lib/addStyles.js:136:1) at module.exports (/home/cmiss/Jenkins/workspace/Physiome Portal/test/node_modules/style-loader/lib/addStyles.js:87:1) at Object.<anonymous> (/home/cmiss/Jenkins/workspace/Physiome Portal/src/styles/my_styles.css?5fdb:16:1) at __webpack_require__ (/home/cmiss/Jenkins/workspace/Physiome Portal/test/.tmp/mocha-webpack/1578524149626/webpack/bootstrap:19:1) at Object.<anonymous> (/home/cmiss/Jenkins/workspace/Physiome Portal/test/.tmp/mocha-webpack/src/ui/OrgansViewerDialog.js:1:1) at __webpack_require__ (/home/cmiss/Jenkins/workspace/Physiome Portal/test/.tmp/mocha-webpack/1578524149626/webpack/bootstrap:19:1) at Object.<anonymous> (/home/cmiss/Jenkins/workspace/Physiome Portal/test/.tmp/mocha-webpack/src/index.js:16:1) at __webpack_require__ (/home/cmiss/Jenkins/workspace/Physiome Portal/test/.tmp/mocha-webpack/1578524149626/webpack/bootstrap:19:1) at Object.<anonymous> (/home/cmiss/Jenkins/workspace/Physiome Portal/test/.tmp/mocha-webpack/1578524149626/test/organsViewer.test.js:1:1) at __webpack_require__ (/home/cmiss/Jenkins/workspace/Physiome Portal/test/.tmp/mocha-webpack/1578524149626/webpack/bootstrap:19:1) at run (/home/cmiss/Jenkins/workspace/Physiome Portal/test/node_modules/mocha-webpack/lib/entry.js:3:1) at Array.forEach (<anonymous>) at Object.<anonymous> (/home/cmiss/Jenkins/workspace/Physiome Portal/test/node_modules/mocha-webpack/lib/entry.js:10:1) at __webpack_require__ (/home/cmiss/Jenkins/workspace/Physiome Portal/test/.tmp/mocha-webpack/1578524149626/webpack/bootstrap:19:1) at ids (/home/cmiss/Jenkins/workspace/Physiome Portal/test/.tmp/mocha-webpack/1578524149626/webpack/bootstrap:83:1) at Object.<anonymous> (/home/cmiss/Jenkins/workspace/Physiome Portal/test/.tmp/mocha-webpack/1578524149626/main.js:87:10) at Module._compile (internal/modules/cjs/loader.js:689:30) at Object._module2.default._extensions.(anonymous function) [as .js] (/home/cmiss/Jenkins/workspace/Physiome Portal/test/node_modules/mocha-webpack/lib/util/registerRequireHook.js:148:12) at Module.load (internal/modules/cjs/loader.js:599:32) at tryModuleLoad (internal/modules/cjs/loader.js:538:12) at Function.Module._load (internal/modules/cjs/loader.js:530:3) at Module.require (internal/modules/cjs/loader.js:637:17) at require (internal/modules/cjs/helpers.js:22:18) at /home/cmiss/Jenkins/workspace/Physiome Portal/test/node_modules/mocha/lib/mocha.js:231:27 at Array.forEach (<anonymous>) at Mocha.loadFiles (/home/cmiss/Jenkins/workspace/Physiome Portal/test/node_modules/mocha/lib/mocha.js:228:14) at Mocha.run (/home/cmiss/Jenkins/workspace/Physiome Portal/test/node_modules/mocha/lib/mocha.js:536:10) at /home/cmiss/Jenkins/workspace/Physiome Portal/test/node_modules/mocha-webpack/lib/runner/TestRunner.js:191:27 at /home/cmiss/Jenkins/workspace/Physiome Portal/test/node_modules/mocha-webpack/lib/webpack/compiler/registerReadyCallback.js:26:7 at AsyncSeriesHook.eval [as callAsync] (eval at create (/home/cmiss/Jenkins/workspace/Physiome Portal/test/node_modules/tapable/lib/HookCodeFactory.js:33:10), <anonymous>:18:1) at AsyncSeriesHook.lazyCompileHook (/home/cmiss/Jenkins/workspace/Physiome Portal/test/node_modules/tapable/lib/Hook.js:154:20) at emitRecords.err (/home/cmiss/Jenkins/workspace/Physiome Portal/test/node_modules/webpack/lib/Compiler.js:304:22) at Compiler.emitRecords (/home/cmiss/Jenkins/workspace/Physiome Portal/test/node_modules/webpack/lib/Compiler.js:499:39) at emitAssets.err (/home/cmiss/Jenkins/workspace/Physiome Portal/test/node_modules/webpack/lib/Compiler.js:298:10) at hooks.afterEmit.callAsync.err (/home/cmiss/Jenkins/workspace/Physiome Portal/test/node_modules/webpack/lib/Compiler.js:485:14) at AsyncSeriesHook.eval [as callAsync] (eval at create (/home/cmiss/Jenkins/workspace/Physiome Portal/test/node_modules/tapable/lib/HookCodeFactory.js:33:10), <anonymous>:6:1) at AsyncSeriesHook.lazyCompileHook (/home/cmiss/Jenkins/workspace/Physiome Portal/test/node_modules/tapable/lib/Hook.js:154:20) at asyncLib.forEachLimit.err (/home/cmiss/Jenkins/workspace/Physiome Portal/test/node_modules/webpack/lib/Compiler.js:482:27) at /home/cmiss/Jenkins/workspace/Physiome Portal/test/node_modules/neo-async/async.js:2818:7 at done (/home/cmiss/Jenkins/workspace/Physiome Portal/test/node_modules/neo-async/async.js:3522:9) at AsyncSeriesHook.eval [as callAsync] (eval at create (/home/cmiss/Jenkins/workspace/Physiome Portal/test/node_modules/tapable/lib/HookCodeFactory.js:33:10), <anonymous>:6:1) at AsyncSeriesHook.lazyCompileHook (/home/cmiss/Jenkins/workspace/Physiome Portal/test/node_modules/tapable/lib/Hook.js:154:20) at outputFileSystem.writeFile.err (/home/cmiss/Jenkins/workspace/Physiome Portal/test/node_modules/webpack/lib/Compiler.js:464:33) at MemoryFileSystem.writeFile (/home/cmiss/Jenkins/workspace/Physiome Portal/test/node_modules/memory-fs/lib/MemoryFileSystem.js:328:9) at writeOut (/home/cmiss/Jenkins/workspace/Physiome Portal/test/node_modules/webpack/lib/Compiler.js:462:30) at asyncLib.forEachLimit (/home/cmiss/Jenkins/workspace/Physiome Portal/test/node_modules/webpack/lib/Compiler.js:476:7) at arrayIterator (/home/cmiss/Jenkins/workspace/Physiome Portal/test/node_modules/neo-async/async.js:3467:9) at timesSync 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} .tissueDisplayPortCollapse { position:absolute; width:25%; left:50%;top:0%; height:50%; display: block; } .cellDisplayPortCollapse { position:absolute; height:50%; width:25%; left:50%; top:50%; border-top: 2px solid #000000; display: block; } .modelDisplayPortCollapse { position:absolute; height:100%; width:25%; left:75%; border-left: 2px solid #000000; display: block; } #bodyGui, #organGui, #tissueGui, #modelGui, #cellGui { position: absolute; left: 1%; z-index: 1; } #gui { transform:translate(0%, 0px); } .textContainer { position:relative; width:100%; } .titleContainer { position:relative; width:100%; padding-top: 1%; } .titleText { text-align: center;font-style: italic;font-size: 160%; text-shadow: -1px 0 white, 0 1px white, 1px 0 white, 0 -1px white; } .selectionText { text-align: center; text-shadow: -1px 0 white, 0 1px white, 1px 0 white, 0 -1px white; } img.model { display: block; margin-left: auto; margin-right: auto; margin-top: auto; margin-bottom: auto; max-height:100%; max-width:100%; } .cellSelectionButton { text-align: center; z-index:2; } #cellButtonDivider { position:absolute; width:100%; text-align: center; display:flex; } #modelsContainer { text-align:center; max-width:100%; max-height:80%; top:5%; right:0%; visibility: visible; position: relative; overflow-x: auto; overflow-y: auto; border-style: groove; } .svgContainer { height:90%; width:100%; } #ZoomControl{ visibility: visible; } #systemToggle { position:absolute; top:20%; left:2%; } .systemToggleButton { text-shadow: 1px 0 0 #000, 0 -1px 0 #000, 0 1px 0 #000, -1px 0 0 #000; width:37px; height:30px; color:#fff!important; font-size:15px; margin-top: 5px; text-align: center; } .systemToggleButtonOn { border-color: #00ff00; } .systemToggleButtonOff { border-color: #ff0000; } .systemToggleButtonPartial { border-color: #0000ff; } .systemToggleButtonOn:hover { background-color: RED !important; } .systemToggleButtonPartial:hover { background-color: GREEN !important; } .systemToggleButtonOff:hover { background-color: GREEN !important; } #organLinkButton { bottom: 3%; z-index:2; visibility: hidden; background-color:rgb(100%, 30%, 30%); } .modelButton { margin-top:5%; } #modelsController { position:relative; text-align:center; visibility:visible; display:block; }.leftTopButton { position:absolute; left: 1%; z-index:2; } .organsImg { max-height: 100%; max-width: 100%; position: absolute; } .organsImgContainer { text-align:left; top: 2%; height: 96%; left: 30%; width: 68%; position: absolute; } .range-slider { // Slider .input-range { -webkit-appearance: none; height: 200px; border-radius: 5px; background: #ccc; outline: none; writing-mode: bt-lr; /* IE */ -webkit-appearance: slider-vertical; /* WebKit */ } } .organsSecondSceneDisplay { height:100%; width:50%; left:50%; top:0%; border-left: 2px solid #000000; position:absolute; } .organsSecondNerveDisplay { height:100%; width:33%; left:33%; top:0%; border-left: 2px solid #000000; position:absolute; } .organsSVGDisplay { height:100%; width:34%; left:66%; top:0%; border-left: 2px solid #000000; position:absolute; } .portalDatGui { position:absolute; height: 95%; pointer-events: none; } #meshGui li.folder .dg .c { width:20%; } #meshGui li.folder .dg .property-name { width:80%; font-size:10px; } THREE.WebGLRenderer 93 THREE.WebGLRenderer: WEBGL_depth_texture extension not supported. THREE.WebGLRenderer: OES_texture_float_linear extension not supported. THREE.WebGLRenderer: OES_texture_half_float extension not supported. THREE.WebGLRenderer: OES_texture_half_float_linear extension not supported. THREE.WebGLRenderer: OES_standard_derivatives extension not supported. /models/test_metadata.json /models/test_geometry.json /models/test_texture.json /models/test_point.json /models/test_glyph.json /models/test_view.json /models/test_glyph_geometry.json MOCHA Tests completed successfully Recording test results [Set GitHub commit status (universal)] SUCCESS on repos [GHRepository@dd4ee8[description=Multiscale Physiome Browser,homepage=<null>,name=MPB,fork=true,archived=false,size=34719,milestones={},language=JavaScript,commits={},responseHeaderFields={null=[HTTP/1.1 200 OK], Access-Control-Allow-Origin=[*], Access-Control-Expose-Headers=[ETag, Link, Location, Retry-After, X-GitHub-OTP, X-RateLimit-Limit, X-RateLimit-Remaining, X-RateLimit-Reset, X-OAuth-Scopes, X-Accepted-OAuth-Scopes, X-Poll-Interval, X-GitHub-Media-Type], Cache-Control=[private, max-age=60, s-maxage=60], Content-Encoding=[gzip], Content-Security-Policy=[default-src 'none'], Content-Type=[application/json; charset=utf-8], Date=[Wed, 08 Jan 2020 22:55:57 GMT], ETag=[W/"3d2e4ffe17daf3ffbd7c34147e4b579b"], Last-Modified=[Mon, 16 Dec 2019 21:10:03 GMT], OkHttp-Received-Millis=[1578524157198], OkHttp-Response-Source=[CONDITIONAL_CACHE 200], OkHttp-Selected-Protocol=[http/1.1], OkHttp-Sent-Millis=[1578524156653], Referrer-Policy=[origin-when-cross-origin, strict-origin-when-cross-origin], Server=[GitHub.com], Status=[200 OK], Strict-Transport-Security=[max-age=31536000; includeSubdomains; preload], Transfer-Encoding=[chunked], Vary=[Accept, Authorization, Cookie, X-GitHub-OTP, Accept-Encoding], X-Accepted-OAuth-Scopes=[repo], X-Content-Type-Options=[nosniff], X-Frame-Options=[deny], X-GitHub-Media-Type=[github.v3; format=json], X-GitHub-Request-Id=[8CA4:273F:2B4574:31E886:5E165DFC], X-OAuth-Scopes=[admin:repo_hook, repo, repo:status], X-RateLimit-Limit=[5000], X-RateLimit-Remaining=[4999], X-RateLimit-Reset=[1578527757], X-XSS-Protection=[1; mode=block]},url=https://api.github.com/repos/ABI-Software/MPB,id=115053737]] (sha:1c4083c) with context:Physiome Portal Setting commit status on GitHub for https://github.com/ABI-Software/MPB/commit/1c4083ce4f011a88977da58f24a514914bc9c5e4 Setting status of d3d25d036f39063d932c21b9819d5d916c5ebb05 to SUCCESS with url https://autotest.bioeng.auckland.ac.nz/jenkins/job/Physiome%20Portal/26/ and message: 'Build finished. ' Finished: SUCCESS